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Abstract Ocean ecosystems have been subjected to anthropogenic influences for centuries, but the scale of past ecosystem changes is often unknown. For centuries, the European flat oyster (Ostrea edulis), an ecosystem engineer providing biogenic reef habitats, was a culturally and economically significant source of food and trade. These reef habitats are now functionally extinct, and almost no memory of where or at what scales this ecosystem once existed, or its past form, remains. The described datasets present qualitative and quantitative extracts from written records published between 1524 and 2022. These show: (1) locations of past flat oyster fisheries and/or oyster reef habitat described across its biogeographical range, with associated levels of confidence; (2) reported extent of past oyster reef habitats, and; (3) species associated with these habitats. These datasets will be of use to inform accelerating flat oyster restoration activities, to establish reference models for anchoring adaptive management of restoration action, and in contributing to global efforts to recover records on the hidden history of anthropogenic-driven ocean ecosystem degradation.

The conservation and management of marine ecosystems hinge on a comprehensive understanding of the status and trends of top predators. This review delves into the ecological significance of marine top predators, examining their roles in maintaining ecosystem stability and functioning through an integrated analysis of current scientific literature. We first assess the efficacy of various monitoring methods, ranging from traditional field observations to cutting-edge technologies like satellite tracking and environmental DNA (eDNA) analysis and evaluating their strengths and limitations in terms of accuracy, spatial coverage, and cost-effectiveness, providing resource managers with essential insights for informed decision-making. Then, by synthesizing data from diverse marine ecosystems, this study offers a comprehensive overview of the trends affecting top predator populations worldwide. We explore the multifaceted impacts of human activities, climate change, and habitat degradation on the abundance and distribution of these key species. In doing so, we shed light on the broader implications of declining top predator populations, such as trophic cascades and altered community structures. Following a thorough assessment of successful strategies for reversing the decline of top predators, a compilation of recommendations is presented, encompassing effective governance interventions. A crucial aspect of effective ecosystem-based management is the implementation of robust monitoring strategies. Mitigation measures are imperative to reverse the adverse impacts on marine top predators. We present a comprehensive array of mitigation options based on successful case studies. These include the establishment of marine protected areas, the enforcement of fisheries regulations, and the promotion of sustainable fishing practices. We deepen the synergies between these strategies and their potential to mitigate human-induced stressors on top predator populations to safeguard their pivotal role in maintaining marine ecosystem structure and function. By examining marine top predators’ ecological significance, analyzing population trends, discussing monitoring techniques, and outlining effective mitigation strategies, we provide a comprehensive resource for researchers, policymakers, and stakeholders engaged in fostering ecosystem-based management approaches. We conclude that integrating these insights into current management frameworks will be essential to safeguard both top predators and the broader marine environment for future generations.

Elasmobranchs are priority species for conservation due to their rapid decline determined by the unbalanced struggle between a fragile bio-ecology and strong anthropogenic impacts, such as bycatch from professional fishing. In this context, measuring species resistance to catch of poorly selective gear is of paramount importance. During June–October 2022, five experimental fishing campaigns were carried out in the Asinara Gulf (northern Sardinia) through 35 geographically and bathymetrically representative hauls of an area between 30 and 600 m in depth. Skates prevailed over sharks in the number of species, with seven and five species, respectively. We first evaluated the status of each individual with respect to stress due to the trawl’s catch using a three-graded scale. We also recorded individual biometrics (total and disk length, weight and sex, and maturity for males) on board by implementing the best practices in manipulating individuals for physiological recovery and release at sea. After capture, skates resulted in generally better conditions than sharks, although deepwater species of both groups exhibited a worse state than coastal species. The estimated vitality rates also depended on the size of the individuals. This work provides standardized data on the intermingled effect of size, species type, and inhabited depth on the resistance response of some elasmobranch species against capture by trawl fishery activities.

Biogenic reefs are known worldwide to play a key role in benthic ecosystems, enhancing biodiversity and ecosystem functioning at every level, from shallow to deeper waters. Unfortunately, several stressors threaten these vulnerable systems. The widespread presence of marine litter represents one of these. The harmful effects of marine litter on several organisms are known so far. However, only in the last decade, there was increasingly scientific and public attention on the impacts on reef organisms and habitats caused by litter accumulating on the seafloor. This review aims to synthesize literature and discuss the state of current knowledge on the interactions between marine litter and reef organisms in a strongly polluted basin, the Mediterranean Sea. The multiple impacts (e.g., entanglement, ghost-fishing, coverage, etc.) of litter on reef systems, the list of species impacted, and the main litter categories were identified, and a map of the knowledge available so far on this topic was provided. Seventy-eight taxa resulted impacted by marine litter on Mediterranean reefs, and the majority belonged to the phylum Cnidaria (41%), including endangered species like the red coral (Corallium rubrum) and the madrepora coral (Madrepora oculata). Entanglement, caused mainly by abandoned, lost, or otherwise discarded fishing gear (ALDFG), was the most frequent impact, playing a detrimental effect mainly on coralligenous arborescent species and cold-water corals (CWCs). The information was spatially heterogeneous, with some areas almost uncovered by scientific studies (e.g., the Aegean-Levantine Sea and the Southern Mediterranean Sea). Although many legal and policy frameworks have been established to tackle this issue [e.g., marine strategy framework directive (MSFD) and the Barcelona Convention], several gaps still exist concerning the assessment of the impact of marine litter on marine organisms, and in particular on reefs. There is a need for harmonized and standardized monitoring protocols for the collection of quantitative data to assess the impact of litter on reefs and animal forests. At the same time, urgent management measures limiting, for instance, the impact of ALDFG and other marine litter are needed to preserve these valuable and vulnerable marine ecosystems.

The Marine Strategy Framework Directive (MSFD) aims to achieve “Good Environmental Status” (GES) in EU marine waters by 2020. This initiative started its first phase of implementation in 2012, when each member state defined the GES and environmental targets in relation to 11 descriptors and related indicators for 2020. In 2013, the EU Commission launched the reformed Common Fisheries Policy (CFP), which aims to achieve biomass levels capable of producing maximum sustainable yield (MSY) for all commercial stocks exploited in EU waters by 2020, as well as contribute to the achievement of GES. These two pieces of legislation are aligned since according to Descriptor 3 (commercial fish and shellfish), the MSFD requires reaching a healthy stock status with fishing mortality (F) and spawning stock biomass (SSB) compatible with the respective MSY reference limits for all commercial species by 2020. We investigated whether the two policies are effectively aligned in the Mediterranean Sea, an ecosystem where the vast majority of stocks show unsustainable exploitation. For this purpose, we assessed and compared the number and typology of stocks considered by the member states when assessing GES in relation to data on stocks potentially available according to the EU Data Collection Framework (DCF) and the proportion of landings they represented. The number of stocks considered by the member states per assessment area was uneven, ranging between 7 and 43, while the share of landings corresponding to the selected stocks ranged from 23 to 95%. A lack of coherence between GES definitions among the member states was also revealed, and environmental targets were less ambitious than MSFD and CFP requirements. This could possibly reduce the likelihood of achieving fishery sustainability in the Mediterranean by 2020. These conditions limited the envisaged synergies between the two policies and are discussed in consideration of the recent Commission Decision on criteria and methodological standards for GES.

The understanding of fish communities' changes over the past centuries has important implications for conservation policy and marine resource management. However, reconstructing these changes is difficult because information on marine communities before the second half of the 20(th) century is, in most cases, anecdotal and merely qualitative. Therefore, historical qualitative records and modern quantitative data are not directly comparable, and their integration for long-term analyses is not straightforward. We developed a methodology that allows the coding of qualitative information provided by early naturalists into semi-quantitative information through an intercalibration with landing proportions. This approach allowed us to reconstruct and quantitatively analyze a 200-year-long time series of fish community structure indicators in the Northern Adriatic Sea (Mediterranean Sea). Our analysis provides evidence of long-term changes in fish community structure, including the decline of Chondrichthyes, large-sized and late-maturing species. This work highlights the importance of broadening the time-frame through which we look at marine ecosystem changes and provides a methodology to exploit, in a quantitative framework, historical qualitative sources. To the purpose, naturalists' eyewitness accounts proved to be useful for extending the analysis on fish community back in the past, well before the onset of field-based monitoring programs.