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Photoautotrophic picoplankton (0.2–2 μm) can be a major contributor to primary production and play a significant part in the ecosystem carbon flow. However, the understanding about the dynamics of both eukaryotic and prokaryotic components of picoplankton in shallow eutrophic freshwater environments is still poor. Very few studies in these ecosystems reveal the taxonomic composition of picoeukaryotes. The main objective of this study was to investigate the seasonal dynamics of phototrophic picoplankton with the emphasis on the eukaryote community composition in a large shallow, eutrophic lake of the northern temperate zone (Lake Võrtsjärv). Phytoplankton pigments were employed to determine the taxonomic composition of photoautotrophic picoplankton. We found out that photoautotrophic picoplankton constitutes an important part of the phytoplankton community in Lake Võrtsjärv and its contribution can be highly variable (from ~9.3% to ~39%) in different years. The eukaryotic photoautotrophic picoplankton was dominated by diatoms followed by chrysophytes and other minor groups. Picoeukaryotes were prevailing in low-light conditions and low temperatures as their predominance in the picoplankton community was tightly linked to the presence or absence of ice cover. Ice cover strongly suppressed the growth of picocyanobacteria. Total phosphorus, turbidity and metazooplankton abundance had a clear relationship with photoautotrophic picoplankton chlorophyll a. [ABSTRACT FROM AUTHOR]

Most studies aiming to explore the response of algae and zooplankton trophic interactions to climate variability have only been focused on unidirectional and very short‐term trends in temperature changes. As a result, the non‐stationary aspect of climate change (warming and cooling periods, frequencies) remains completely unstudied.We studied elemental and stable isotope composition of sedimentary organic matter, photosynthetic pigments, and carbon stable isotope composition of Cladocera resting eggs in a sediment record covering the last c. 2,600 years. We examined how past climate change acting at different timescales affected algal biomass and community composition, and carbon assimilation by zooplankton in a boreal lake.Our study revealed major effects of both long‐term climate trends and shorter‐term fluctuations on algae–zooplankton interactions in a boreal lake. We found the main climate trends, in particular the Little Ice Age, induced algal biomass and community composition changes and drastic changes in carbon assimilation by zooplankton. Interestingly, we found that temperature fluctuations could also contribute to regulating algae–zooplankton interactions. Specifically, we observed drastic changes in sedimentary markers and stable isotope composition of zooplankton remains during the most recent period, suggesting a strong influence of ongoing anthropogenic change on algae–zooplankton interactions.Our study confirms previous findings showing close long‐term linkage between the temporal dynamics of zooplankton diet and planktonic algae, and that both climate trends and short‐term fluctuations are key in regulating consumer–resource trophic interactions.Novel approaches that combine high temporal resolution paleolimnological reconstructions and contemporary monitoring studies are needed to better understand climate change effects on algae–zooplankton interactions and lake food webs. [ABSTRACT FROM AUTHOR]

Understanding long‐term carbon flows through aquatic food webs is essential to assess impact of climatic and environmental changes on lake ecosystems. We reconstructed temporal changes in carbon sources fuelling chironomid biomass in a small and shallow hemiboreal/boreal lake over the last 11 000 years. Results were compared with temporal dynamics of known potential controlling factors: summer air temperature, human activities, phytoplankton assemblages and organic matter composition. We report an abrupt rise in the contribution of methane‐derived carbon to chironomid biomass. However, this sudden increase was not the consequence of drastic changes in the composition of sedimentary organic matter, mean air temperature, lake trophic state or human activities in the catchment area. Our results suggest that shallowing of the lake caused by sedimentary infilling processes was a possible driver of the expansion of anoxic zones, enhancing CH4 cycling in lake sediments. However, complementary studies are needed to better understand the mechanisms by which lake shallowing could affect carbon flows to aquatic consumers, and then better assess the natural dynamics of past carbon processing in the benthic food web of shallow lakes. [ABSTRACT FROM AUTHOR]

Abstract: A palaeolimnological study, covering the last c. 12,000 years, was conducted in a small subalpine lake located in the Alps to study climate change impacts on carbon flows through food webs in small lakes. We used analysis of sedimentary pigments and carbon stable isotopic composition of chironomid remains (δ13CHC) to reconstruct past dynamics of phytoplankton community and carbon sources sustaining benthic consumers. Chironomid biomass was sustained by a combination of allochthonous, autochthonous and CH4‐derived organic matters, and their relative contributions were correlated to changes in temperature. Relatively high terrestrial contributions to chironomid biomass were observed during period of the Holocene when in‐lake production was low. Relatively high incorporation of CH4‐derived carbon to chironomid biomass was found during anoxic events co‐occurring with the Holocene thermal maximum. Results were then compared with those collected in a small boreal lake in Estonia. We tested the hypothesis that responses in carbon flows through benthic food web to past climate change would be similar between these lakes. We found a negative correlation between δ13CHC values of both lakes and inferred air temperature, suggesting that temperature was the major driver to different food sources being incorporated into chironomid biomass. Our study demonstrated that air temperature was the principal driver of the energy flows through benthic food web in the studied small lakes. We conjectured that carbon cycling in food webs of small lakes might be strongly sensitive to climate change. [ABSTRACT FROM AUTHOR]

Small-bodied cladocerans and cyclopoid copepods are becoming increasingly dominant over large crustacean zooplankton in eutrophic waters where they often coexist with cyanobacterial blooms. However, relatively little is known about their algal diet preferences. We studied grazing selectivity of small crustaceans (the cyclopoid copepods Mesocyclops leuckarti, Thermocyclops oithonoides, Cyclops kolensis, and the cladocerans Daphnia cucullata, Chydorus sphaericus, Bosmina spp.) by liquid chromatographic analyses of phytoplankton marker pigments in the shallow, highly eutrophic Lake Võrtsjärv (Estonia) during a seasonal cycle. Copepods (mainly C. kolensis) preferably consumed cryptophytes (identified by the marker pigment alloxanthin in gut contents) during colder periods, while they preferred small non-filamentous diatoms and green algae (identified mainly by diatoxanthin and lutein, respectively) from May to September. All studied cladoceran species showed highest selectivity towards colonial cyanobacteria (identified by canthaxanthin). For small C. sphaericus, commonly occuring in the pelagic zone of eutrophic lakes, colonial cyanobacteria can be their major food source, supporting their coexistence with cyanobacterial blooms. Pigments characteristic of filamentous cyanobacteria and diatoms (zeaxanthin and fucoxanthin, respectively), algae dominating in Võrtsjärv, were also found in the grazers’ diet but were generally avoided by the crustaceans commonly dominating the zooplankton assemblage. Together these results suggest that the co-occurring small-bodied cyclopoid and cladoceran species have markedly different algal diets and that the cladocera represent the main trophic link transferring cyanobacterial carbon to the food web in a highly eutrophic lake. [ABSTRACT FROM AUTHOR]

Pigment-based chemotaxonomy and CHEMTAX software have proven to be a valuable phytoplankton monitoring tool in marine environments, but are yet underdeveloped to determine algal assemblages in freshwater ecosystems. The main objectives of this study were (1) to compare the results of direct microscopy and CHEMTAX in describing phytoplankton community composition dynamics in a large, shallow and eutrophic lake; (2) to analyze the efficiency of the pigment-based method to detect changes in phytoplankton seasonal dynamics and during rapid bloom periods; (3) to assess the suitability of specific marker pigments and available marker pigment:chlorophyll a ratios to follow seasonal changes in eutrophic freshwater environment. A 5-year (2009-2013) parallel phytoplankton assessment by direct microscopy and by CHEMTAX was conducted using published marker pigment:chlorophyll a ratios. Despite displaying some differences from microscopy results, the pigment-based method successfully described the overall pattern of phytoplankton community dynamics during seasonal cycle in a eutrophic lake. Good agreement between the methods was achieved for most phytoplankton groups - cyanobacteria, chlorophytes, diatoms and cryptophytes. The agreement was poor in case of chrysophytes and dinoflagellates. Our study shows clearly that published marker pigment:chlorophyll a ratios can be used to describe algal class abundances, but they need to be calibrated for specific freshwater environment. Broader use of this method would enable to expand monitoring networks and increase measurement frequencies of freshwater ecosystems to meet the goals of the Water Framework Directive. [ABSTRACT FROM AUTHOR]

In the 1990s a sharp decrease in nitrogen loading occurred in Estonian rivers, bringing about a reduction of the nitrogen-to-phosphorus ratio (N:P ratio) in the large shallow lakes, Peipsi (3,555 km2, mean depth 7.1 m) and Võrtsjärv (270 km2, 2.8 m). The average mass ratio of total nitrogen (TN) and total phosphorus (TP) in Võrtsjärv (45) was about twice as high as that in Peipsi (22). In Peipsi, the N2-fixing Gloeotrichia echinulata, Aphanizomenon flos-aquae and Anabaena species prevailed in the summer phytoplankton, while in Võrtsjärv the dominant cyanobacteria were Limnothrix planktonica, L. redekei and Planktolyngbya limnetica, which cannot fix N2; the main N2-fixing taxa Aphanizomenon skujae and Anabaena sp. seldom gained dominance. In May–October the critical TN:TP mass ratio, below which N2-fixing cyanobacteria (Nfix) achieved high biomasses, was ∼40 in Võrtsjärv and ∼30 in Peipsi. The percentages of both total cyanobacteria (CY) and Nfix (CY% and Nfix%) in Peipsi achieved their maximum values at an N:P mass ratio at or below 20 for both TN:TP and Nmin:SRP. In Võrtsjärv, the TN:TP supporting a high Nfix% was between 30 and 40 and the Nmin:SRP supporting this high percentage was in the same range as that in Peipsi (<20), though the maximum Nfix% values in Võrtsjärv (69%) were much lower than in Peipsi (96%). The Nmin:SRP ratio explained 77% of the variability in Nfix% in May–October. The temperature dependence of Nfix% approximated to the maximum function type, with an upper limiting value at a certain water temperature, and this was most distinct in May–October. The critical TN:TP ratios obtained from our study (roughly 30 for Peipsi and 40 for Võrtsjärv) are much higher than the Redfield N:P mass ratio routinely considered (7). Our results represent valuable guidelines for creating effective management strategies for large shallow lakes. They provide a basis for stressing the urgent need to decrease phosphorus loading and to keep the in-lake P concentration low, and not to implement nitrogen reduction measures without a simultaneous decrease of phosphorus concentration. [ABSTRACT FROM AUTHOR]

Stratified lakes often receive more attention from limnologists although most of the world's lakes are indeed shallow. This study describes ecological processes in three shallow lakes, one dominated by macrophytes, one by phytoplankton, and one with both of them. Investigations focused on abiotic (water chemistry) as well as biotic factors such as phytoplankton, bacteria, zooplankton, and macrophytes. The macrophyte- and plankton-dominated lakes differed clearly in water transparency, which was far greater in macrophyte-dominated lakes due to phytoplankton setback in summer. Similar nutrient and zooplankton dynamics occurred in both types of lakes, suggesting that an alternative mechanism may account for the observed phytoplankton decline in macrophyte lakes. In contrast, herbivorous ciliates dominated only in the macrophyte lake. More intensive ciliate grazing could be one factor causing a decrease in phytoplankton numbers. In the plankton-dominated lake bacteria were mostly related to phytoplankton production but that was not the case in the macrophyte-dominated lake. In the plankton-dominated lake the grazing rate of ciliates on bacteria was higher than in the macrophyte-dominated one. However, when grazing on small algae was considered, the highest grazing rates were found in the macrophyte-dominated lake. This suggests that the microbial loop was weaker in the macrophyte-dominated lake than in the plankton-dominated lake. [ABSTRACT FROM AUTHOR]

Understanding the long-term dynamics of ecological communities on the centuries-to-millennia scale is important for explaining the emergence of present-day biodiversity patterns and for predicting possible future scenarios. Fossil pigments and ancient DNA present in various sedimentary deposits can be analysed to study long-term changes in ecological communities. We analysed recent compilations of data, including fossil pigments, microfossils, and molecular inventories from the sedimentary archives, to understand the impact of gradual versus abrupt climate changes on the ecosystem status of a regional model lake over the last ∼14.5 kyr. Such long and complete paleo-archives are scarce in North-Eastern Europe. The study site lies in a sensitive area, both climatically and in respect to vegetation. Namely the maritime-continentality line runs west to east in the central Baltic area to NE Europe and its south-north transect lies within the gradual decay of the nemoral forest into a boreal environment. Therefore, the selected location is an ideal sampling point to decipher long term environmental changes in the temperate climate zone. The main objective of the present study was to find out external factors influencing phototroph dynamics at temperate Lake Lielais Svētiņu over the post-glacial period (∼14.5 kyr). We were able to model climate change together with vegetation change and the appearance of anthropogenic forcing, either as a gradual change or as abrupt events that influenced the phototrophs, which are keystone groups within the lacustrine ecosystem. Most interestingly, the gradual increase of species richness of phototrophs was linked to similar increase in fungal parasites of the same group – phototrophs. Abrupt climate change in the Late Glacial period caused abrupt events in the ecosystem but equally abrupt events were caused by gradual changes during the stable period of the Holocene Thermal Maximum (HTM). In addition, we highlight the increased frequency and degree of perturbation in pristine lakes due to low impact human activity over a larger region. Both observations demonstrate an impaired relationship between gradual external drivers and ecosystem response and apply to future scenarios of climate warming and increased human impact in north-eastern Europe. • Gradual climate change leads to natural eutrophication or oligotrophication processes depending on whether the climate is warming or cooling. • A threshold-like response of the phototroph community occurs when climate, lake ontogeny or human influence disrupts the in-lake community. • Low impact disruption can lead to increased microbial biodiversity in aquatic ecosystems, most prominently in fungal parasites of phototrophs, which could lead to future non-linear changes in lake ecological status. [ABSTRACT FROM AUTHOR]