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The work was supported by a grant from the Spanish Ministerio de Ciencia e Innovación, PID2020-119163 GB-I00, and SG benefited from a Ramón y Cajal contract (RYC-2014–16608), both funded by MCIN/AEI/10.13039/501100011033., Introduction Materials and methods Results and discussion Data availability References Acknowledgements Funding Author information Ethics declarations Additional information Rights and permissions About this article

A special‐purpose Committee on DNA Sequences as Types was established at the XIX International Botanical Congress (IBC) in Shenzhen, China, in 2017, with a mandate to report to the XX IBC in Madrid in 2024 with recommendations on a preferred course of action with respect to potential amendments of the International Code of Nomenclature for algae, fungi, and plants to allow DNA sequences as types. This is the first in an expected series of papers from the Special‐purpose Committee on this issue. We set out the background to the establishment of the Committee, explore key issues around typification that are pertinent to the question of DNA sequences as types, enumerate pros and cons of allowing DNA sequences as types, and foreshadow options for future discussion and potential recommendations.

PREMISE State‐sponsored weather stations became ubiquitous by the 1880s, yet many old climate data and phenological observations still need to be digitized and made accessible. METHODS We here make available flowering times for 450 species of herbs and shrubs gathered in 1844 by Carl Friedrich Philipp von Martius (1794–1868), director of the Munich Botanical Garden. The data formed part of the world’s third‐oldest phenological monitoring network as we explain in a brief overview of the history of such networks. Using data from one of the world’s oldest continuously functioning weather stations, Hohenpeißenberg, we relate temperature to flowering in three species with short flowering times and herbarium collections made since 1844 within the city’s perimeter, namely, Anemone patens, A. pulsatilla, and Arum maculatum. RESULTS Mean advances in flowering dates were 1.3–2.1 days/decade or 3.2–4.2 days/1°C warming. These advances are in keeping with similar advances in other European herbs during more recent periods. CONCLUSIONS Future studies might use the 1844 flowering data made available here as a source of information on the availability of particular flowers for specialized pollinators including insects looking for oviposition sites, such as the Psychoda flies that become trapped in Arum inflorescences. Another use of Martius’s 1844 data would be their incorporation into larger‐scale analyses of flowering in southern‐central Europe., American Journal of Botany, 108 (4), ISSN:1914-2016, ISSN:0002-9122

Hundreds of land plant lineages have independently evolved separate sexes in either gametophytes (dioicy) or sporophytes (dioecy), but 43% of all dioecious angiosperms are found in just 34 entirely dioecious clades, suggesting that their mode of sex determination evolved a long time ago. Here, we review recent insights on the molecular mechanisms that underlie the evolutionary change from individuals that each produce male and female gametes to individuals specializing in the production of just one type of gamete. The canonical model of sex chromosome evolution in plants predicts that two sex-determining genes will become linked in a sex-determining region (SDR), followed by expanding recombination suppression, chromosome differentiation and, ultimately, degeneration. Experimental work, however, is showing that single genes function as master regulators in model systems, such as the liverwort Marchantia and the angiosperms Diospyros and Populus. In Populus, this type of regulatory function has been demonstrated by genome editing. In other systems, including Actinidia, Asparagus and Vitis, two coinherited factors appear to independently regulate female and male function, yet sex chromosome differentiation has remained low. We discuss the best-understood systems and evolutionary pathways to dioecy, and present a meta-analysis of the sizes and ages of SDRs. We propose that limited sexual conflict explains why most SDRs are small and sex chromosomes remain homomorphic. It appears that models of increasing recombination suppression with age do not apply because selection favours mechanisms in which sex determination depends on minimal differences, keeping it surgically precise.

The increase in managed honeybees (Apis mellifera) in many European cities has unknown effects on the densities of wild bees through competition. To investigate this, we monitored honeybees and non-honeybees from 01 April to 31 July 2019 and 2020 at 29 species of plants representing diverse taxonomic and floral-functional types in a large urban garden in the city of Munich in which the same plant species were cultivated in both years. No bee hives were present in the focal garden, and all bee hives in the adjacent area were closely monitored by interviewing the relevant bee keepers in both 2019 and 2020. Honeybee numbers were similar in April of both years, but increased from May to July 2020 compared to 2019. The higher densities correlated with a significant increase in shifts from wild bee to honeybee visits in May/June/July, while visitor spectra in April 2019 and 2020 remained the same. Most of the species that experienced a shift to honeybee visits in 2020 were visited mostly or exclusively for their nectar. There were no shifts towards increased wild bee visits in any species. These results from a flower-rich garden have implications for the discussion of whether urban bee keeping might negatively impact wild bees. We found clear support that high honeybee densities result in exploitative competition at numerous types of flowers.

Animal-pollinated plants have to get pollen to a conspecific stigma while protecting it from getting eaten. Touch-sensitive stamens, which are found in hundreds of flowering plants, are thought to function in enhancing pollen export and reducing its loss, but experimental tests are scarce. Stamens of Berberis and Mahonia are inserted between paired nectar glands and when touched by an insect’s tongue rapidly snap forward so that their valvate anthers press pollen on the insect’s tongue or face. We immobilized the stamens in otherwise unmodified flowers and studied pollen transfer in the field and under enclosed conditions. On flowers with immobilized stamens, the most common bee visitor stayed up to 3.6× longer, yet removed 1.3× fewer pollen grains and deposited 2.1× fewer grains on stigmas per visit. Self-pollen from a single stamen hitting the stigma amounted to 6% of the grains received from single bee visits. Bees discarded pollen passively placed on their bodies, likely because of its berberine content; nectar has no berberine. Syrphid flies fed on both nectar and pollen, taking more when stamens were immobilized. Pollen-tracking experiments in two Berberis species showed that mobile-stamen-flowers donate pollen to many more recipients. These results demonstrate another mechanism by which plants simultaneously meter out their pollen and reduce pollen theft.

In 1917, sex chromosomes in plants were discovered in a liverwort with hetermorphic U and V chromosomes. Such heteromorphy is unexpected because, unlike the XY chromosomes in diploid-dominant plants, in haploid-dominant plants the female U and the male V chromosomes experience largely symmetrical potential recombination environments. Here we use molecular cytogenetics and super-resolution microscopy to study Frullania dilatata, a liverwort with one male and two female sex chromosomes. We applied a pipeline to Illumina sequences to detect abundant types of repetitive DNA and developed FISH probes to microscopically distinguish the sex chromosomes. We also determined the phenotypic population sex ratio because biased ratios have been reported from other liverworts with heteromorphic sex chromosomes. Populations had male-biased sex ratios. The sex chromosomes are monocentric, and of 14 probes studied (eight satellites, five transposable elements and one plastid region), four resulted in unique signals that differentiated the sex chromosomes from the autosomes and from each other. One FISH probe selectively marked the centromeres of both U chromosomes, so we could prove that during meiosis each U chromosome associates with one of the opposite telomeres of the V chromosome, resulting in a head-to-head trivalent. The similarity of the two U chromosomes to each other in size and in their centromere FISH signal positions points to their origin via a non-disjunction event (aneuploidy), which would fit with the general picture of sex chromosomes rarely crossing-over and being prone to suffer from non-disjunction.

Previous work has shown that among 428 species of bees occurring in Germany, decline or extinction over the past 40 years have been correlated with late-season emergence and restricted habitats, while other factors, such as pollen specialization, body size, nesting sites, and sociality, played no role in models that included a phylogeny of these bees. Doing best are spring-flying, city-dwelling species. Building on these results, we here investigate changes in bee diversity from the 1990s to 2018 at three protected sites within the city perimeter of Munich, focusing on the correlates of flight season (spring or summer), flight duration (in months), and number of habitats (one or two vs. three to six). Local species pools were assessed against the total species pool from 1795 onwards. Twenty years ago, 150 species were present at one or more of the sites, while in 2017/2018, this was true of 188 species, with the increase at two sites being of similar proportion. In two of the three areas, broad habitat use was positively correlated with persistence. Flight season or duration had no statistical effect. These results underscore the function of urban protected sites in bee conservation and imply that summer food shortages, which negatively affect bees in agricultural areas, play no role in urbanized regions so that late-season flight is not an extinction handicap.

AIM: Trees need to avoid frost damage to their young leaves by leafing out after the occurrence of the last frost, yet they also need to start photosynthesis early in the season to achieve sufficient growth. This trade‐off leads to the hypothesis that ‘safety margins’ against spring frost should become shorter, the longer the winter duration, perhaps reaching an asymptotic limit where frost damage would occur in most years. Physiologically, shorter safety margins in high‐latitude ecotypes might be achieved by lower degree‐day requirements for leaf‐out, compared to low‐latitude ecotypes. LOCATION: Europe. TIME PERIOD: 1902–2009. MAJOR TAXA STUDIED: Temperate trees. METHODS: Using herbarium collections of Acer platanoides, Carpinus betulus, Fagus sylvatica and Prunus spinosa made over 108 years at 40° to 60° N latitude, we related historic leaf‐out dates to winter and spring temperatures (chilling and degree‐days), winter duration, and date of last frost occurrence in the relevant years and locations. RESULTS: In all species, frost safety margins decreased towards high‐latitude regions with long winters, with each day increase in winter duration reducing frost safety margins by 0.48 days in Fagus and 0.32–0.21 days in Prunus, Acer and Carpinus. These latitudinal differences correlate with northern ecotypes’ shorter degree‐day requirements for leaf‐out. MAIN CONCLUSIONS: The decline in spring frost safety margins in regions with long winters supports the new hypothesis that species may reach their geographic range limit where they ‘bump up’ against experiencing regular frost injury to their young leaves. Larger datasets are necessary to further corroborate our hypothesis and future efforts should thus be directed toward increasing the latitudinal range of existing phenological databases.

Background and Aims Unlike other nuclear genes in eukaryotes, rDNA genes (5S and 35S loci) are present in numerous copies per cell and, when stained, can therefore provide basic information about genome organization. In tracheophytes (vascular plants), they are usually located on separate chromosomes, the so-called S-type organization. An analysis of 1791 species of land plants suggested that S-type arrays might be ancestral in land plants, while linked (L-type) organization may be derived. However, no outgroup and only a handful of ferns and bryophytes were included. Methods We analysed genome sizes and the distribution of telomere, 5S and 35S rDNA FISH signals in up to 12 monoicous or dioicous species of liverworts from throughout a phylogeny that includes 287 of the 386 currently recognized genera. We also used the phylogeny to plot chromosome numbers and the occurrence of visibly distinct sex chromosomes. Key Results Chromosome numbers are newly reported for the monoicous Lejeunea cavifolia and for females of the dioicous Scapania aequiloba. We detected sex-related differences in the number of rDNA signals in the dioicous Plagiochila asplenioides and Frullania dilatata. In the latter, the presence of two UU chromosomes in females and additional 5S-35S rDNA loci result in a haploid genome 0.2082 pg larger than the male genome; sex-specific genome differences in the other dioicous species were small. Four species have S-type rDNA, while five species have mixed L-S rDNA organization, and transitions may have occurred multiple times, as suggested by rDNA loci not being conserved among closely related species of Pellia. All species shared an Arabidopsis-like telomere motif, and its detection allowed verification of the chromosome number of Radula complanata and chromosome rearrangements in Aneura pinguis and P. asplenioides, the latter also showing sex-specific interstitial telomere repeats. Conclusions The S and L rDNA arrangements appear to have evolved repeatedly within liverworts, even in the same species. Evidence for differential accumulation of rDNA between the sexes so far is limited.

Diverse forms of cultivation have evolved across the tree of life. Efficient farming requires that the farmer deciphers and actively promotes conditions that increase crop yield. For plant cultivation, this can include evaluating tradeoffs among light, nutrients, and protection against herbivores. It is not understood if, or how, nonhuman farmers evaluate local conditions to increase payoffs. Here, we address this question using an obligate farming mutualism between the ant Philidris nagasau and epiphytic plants in the genus Squamellaria that are cultivated for their nesting sites and floral rewards. We focused on the ants' active fertilization of their crops and their protection against herbivory. We found that ants benefited from cultivating plants in full sun, receiving 7.5-fold more floral food rewards compared to shade-cultivated plants. The higher reward levels correlated with higher levels of crop protection provided by the ants. However, while high-light planting yielded the greatest immediate food rewards, sun-grown crops contained less nitrogen compared to shade-grown crops. This was due to lower nitrogen input from ants feeding on floral rewards instead of insect protein gained from predation. Despite this tradeoff, farming ants optimize crop yield by selectively planting their crops in full sun. Ancestral state reconstructions across this ant-plant clade show that a full-sun farming strategy has existed for millions of years, suggesting that nonhuman farmers have evolved the means to evaluate and balance conflicting crop needs to their own benefit.

Coriariaceae comprise only Coriaria , a genus of shrubs with nine species in Australasia (but excluding Australia), five in the Himalayas, Taiwan, the Philippines, and Japan, one in the Mediterranean, and one ranging from Patagonia to Mexico. The sister family, Corynocarpaceae, comprises five species of evergreen trees from New Guinea to New Zealand and Australia. This distribution has long fascinated biogeographers as potential support for Wegener's theory of continental drift, with alternative scenarios invoking either Antarctic or Beringian range expansions. Here, we present the discovery of pollen grains from Early Campanian (ca. 82 Mya) deposits in Antarctica, which we describe as Coriaripites goodii sp. nov., and newly generated nuclear and plastid molecular data for most of the family's species and its outgroup. This greatly expands the family's fossil record and is the so far oldest fossil of the order Cucurbitales. We used the phylogeny, new fossil, and an Oligocene flowering branch assigned to a small subclade of Coriaria to generate a chronogram and to study changes in chromosome number, deciduousness, and andromonoecy. Coriaria comprises a Northern (NH) and a Southern Hemisphere (SH) clade that diverged from each other in the Paleocene (ca. 57 Mya), with the SH clade reaching the New World once, through Antarctica, as supported by the fossil pollen. While the SH clade retained perfect flowers and evergreen leaves, the NH clade evolved andromonoecy and deciduousness. Polyploidy occurs in both clades and points to hybridization, matching weak species boundaries throughout the genus.

Linnaeus's very first opus, written when he was 22 years old, dealt with the analogy that exists between plants and animals in how they ‘propagate their species’, and a revised version with a plate depicting the union of male and female Mercurialis annua plants became a foundational text on the sexuality of plants. The question how systems with separate males and females have evolved in sedentary organisms that appear ancestrally bisexual has fascinated biologists ever since. The phenomenon, termed dioecy, has important consequences for plant reproductive success and is of commercial interest since it affects seed quality and fruit production. This theme issue presents a series of articles that synthesize and challenge the current understanding of how plants achieve dioecy. The articles deal with a broad set of taxa, including Coccinia , Ginkgo , Mercurialis , Populus , Rumex and Silene , as well as overarching topics, such as the field's terminology, analogies with animal sex determination systems, evolutionary pathways to dioecy, dosage compensation, and the longevity of the two sexes. In this introduction, we focus on four topics, each addressed by several articles from different angles and with different conclusions. Our highlighting of unclear or controversial issues may help future studies to build on the current understanding and to ask new questions that will expand our knowledge of plant sexual systems. This article is part of the theme issue ‘Sex determination and sex chromosome evolution in land plants’.

Persian walnut (Juglans regia) is cultivated worldwide for its high-quality wood and nuts, but its origin has remained mysterious because in phylogenies it occupies an unresolved position between American black walnuts and Asian butternuts. Equally unclear is the origin of the only American butternut, J. cinerea. We resequenced the whole genome of 80 individuals from 19 of the 22 species of Juglans and assembled the genome of its relatives Pterocarya stenoptera and Platycarya strobilacea. Using phylogenetic-network analysis of single-copy nuclear genes, genome-wide site pattern probabilities, and Approximate Bayesian Computation, we discovered that J. regia (and its landrace J. sigillata) arose as a hybrid between the American and the Asian lineages and that J. cinerea resulted from massive introgression from an immigrating Asian butternut into the genome of an American black walnut. Approximate Bayesian Computation modeling placed the hybrid origin in the late Pliocene, ∼3.45 My, with both parental lineages since having gone extinct in Europe.

Ongoing global warming is causing phenological shifts that affect photosynthesis and growth rates in temperate woody species. However, the effects of seasonally uneven climate warming-as is occurring in much of Europe, where the winter/spring months are warming twice as fast than the summer/autumn months-on autumn growth cessation (completion of overwintering buds) and leaf senescence, and possible carry-over effects between phenophases, remain under-investigated. We conducted experiments in which we exposed saplings of canopy and understory species to 4 °C warming in winter/spring, summer/autumn, or all year to disentangle how the timing of bud break, bud set completion, and leaf senescence is affected by seasonally uneven warming. All-year warming led to significantly delayed leaf senescence, but advanced bud set completion; summer/autumn warming only delayed leaf senescence; and winter/spring warming advanced both bud set and senescence. The non-parallel effects of warming on bud completion and leaf senescence show that leaf senescence alone is an inadequate proxy for autumn growth cessation in trees and counterintuitively suggest that continued uneven seasonal warming will advance cessation of primary growth in autumn, even when leaf senescence is delayed. Phenological responses to warming treatments (earlier spring onset, later autumn senescence) were more than twice as high in understory species than in canopy species, which can partly be explained by the absence of carry-over effects among phenophases in the former group. This underscores the need to consider differences among plant functional types when forecasting the future behaviour of ecosystems.

Phenological mismatch results when interacting species change the timing of regularly repeated phases in their life cycles at different rates. We review whether this continuously ongoing phenomenon, also known as trophic asynchrony, is becoming more common under ongoing rapid climate change. In antagonistic trophic interactions, any mismatch will have negative impacts for only one of the species, whereas in mutualistic interactions, both partners are expected to suffer. Trophic mismatch is therefore expected to last for evolutionarily short periods, perhaps only a few seasons, adding to the difficulty of attributing it to climate change, which requires long-term data. So far, the prediction that diverging phenologies linked to climate change will cause mismatch is most clearly met in antagonistic interactions at high latitudes in the Artic. There is limited evidence of phenological mismatch in mutualistic interactions, possibly because of strong selection on mutualists to have co-adapted phenological strategies. The study of individual plasticity, population variation, and the genetic bases for phenological strategies is in its infancy. Recent work on woody plants revealed the large imprint of historic climate change on temperature, chilling, and day-length thresholds used by different species to synchronize their phenophases, which in the Northern Hemisphere has led to biogeographic phenological regions in which long-lived plants have adapted to particular interannual and intermillennial amplitudes of climate change.

Reconstruction of palaeobiomes, ancient communities that exhibit a physiognomic and functional structure controlled by their environment, depends on proxies from different disciplines. Based on terrestrial mammal fossils, the late Miocene vegetation from China to the eastern Mediterranean and East Africa has been reconstructed as a single cohesive biome with increasingly arid conditions, with modern African savannahs the surviving remnant. Here, we test this reconstruction using plant fossils spanning 14-4 million years ago from sites in Greece, Bulgaria, Turkey, the Tian Shan Mountains and Baode County in China, and East Africa. The western Eurasian sites had a continuous forest cover of deciduous or evergreen angiosperms and gymnosperms, with 15% of 1,602 fossil occurrences representing conifers, which were present at all but one of the sites. Raup-Crick analyses reveal high floristic similarity between coeval eastern Mediterranean and Chinese sites, and low similarity between Eurasian and African sites. The disagreement between plant-based reconstructions, which imply that late Miocene western Eurasia was covered by evergreen needleleaf forests and mixed forests, and mammal-based reconstructions, which imply a savannah biome, throws into doubt the approach of inferring Miocene precipitation and open savannah habitats solely from mammalian dental traits. Organismal communities are constantly changing in their species composition, and neither animal nor plant traits by themselves are sufficient to infer entire ancient biomes. The plant fossil record, however, unambiguously rejects the existence of a cohesive savannah biome from eastern Asia to northeast Africa.

Botanical gardens represent artificial, but stable environments. With this premise, we analyzed the Munich Botanical Garden's bee fauna in 1997/1999 and again in 2015/2017. The garden covers 20 ha, uses no bee-relevant insecticides, has a protected layout, and on three sides abuts protected areas. Outdoors, it cultivates some 10,871 species/subspecies, many suitable as pollen and nectar sources for bees. The first survey found 79 species, the second 106, or 55% of the 192 species recorded for Munich since 1990. A Jackknife estimate for the second survey suggests 115 expected species. Classifying bees according to their thermal preferences (warm habitats, cool habitats, broad preferences, or unknown) revealed that 15 warm-loving species were gained (newly found), two lost (no longer found), and 12 retained, but only one cool-loving species was gained, three lost, and none retained, which multinomial models show to be significant differences. Of the 62 retained species, 27 changed in abundance, with 18 less frequent and nine more frequent by 2017 than they had been in 1997/1999. Retention, gain, or loss were unconnected to pollen specialization and Red List status of bee species. Between 1997 and 2017, average temperatures in Munich have increased by 0.5 °C, and climate warming over the past century is the most plausible explanation for the directional increase in warm-loving and the decrease in cool-adapted species. These results highlight the potential of botanic gardens with their artificially diverse and near-pesticide-free floras as systems in which to investigate climate change per se as a possible factor in shifting insect diversity.

Watermelons are among the most important vegetable crops worldwide, but targeted breeding is hindered by problems with Citrullus taxonomy. Here we clarify nomenclature and species relationships in Citrullus, its chromosome numbers, and the likely geographic region of watermelon domestication. We correct an erroneous chromosome count in recent literature, provide a count for an understudied species, and data on chromosome numbers for the entire genus. We also use a nuclear/plastid locus phylogeny to summarize data on Citrullus sexual systems, loss of tendrils, life history, and geographic ranges. Key insights from new sequences are that (i) material of C. vulgaris var. "colocynthoides", collected by Schweinfurth in Egypt in 1882 represents the colocynth, C. colocynthis, and (ii) the citron or bitter watermelon, C. amarus, is indeed a separate species, not a subspecies of the dessert watermelon. Schweinfurth's varietal name, a nomen nudum, has been widely used for seeds as old as 5400 BP, and it now needs to be investigated whether these seeds are colocynths, watermelon or a hybrid. To help improve Citrullus taxonomy and nomenclature, we allocate some 50 scientific names to seven biological species, tabulate chromosome counts, and provide notes on misidentified germplasms traceable by accession numbers. More wild-collected herbarium-verified material from northeast Africa is urgently needed, especially given the discovery of Russian breeders that populations of wild "cordophanus" from Sudan are closer to the cultivated watermelon than are any other wild populations so far known.

Between 1836 and 1840, Jan Vilém Helfer collected thousands of insects, birds and plants in Burma, the Andaman Islands and the Mergui Archipelago, with many first records from these regions. His botanical specimens are preserved in Prague, Kew, Calcutta and many other herbaria. Yet no account has been published of his itinerary, and the volume of his collections has not previously been appreciated. We bring together the available data on Helfer, reconstruct his itinerary and the two routes by which his plants were distributed, and explain the different numbering systems used on the labels of Helfer's duplicates. Based on what his widow transferred to the Czech National Museum in Prague, Helfer collected almost 48,000 beetles, 609 bird skins, 14 mammal skins, 508 Lepidoptera, and 6,086 herbarium specimens or collections. His diaries and his wife's account of their travels have allowed us to reconstruct his itinerary, and we have generated new labels for 305 collections, most of which have two or three duplicates. Helfer's Burmese and Andaman herbarium contains some of the first records of economically important plants in which he was particularly interested.

Trait matching between the Madagascan orchid Angraecum sesquipedale, with a nectar spur of 33 cm, and a hawkmoth with a tongue almost as long has fascinated biologists since Darwin, who saw only flowers but correctly predicted the moth pollinator. This moth, Xanthopan morgani praedicta, was described from museum specimens in 1903 and documented as the pollinator in photographs and film in 1992 and 2004. However, Madagascar harbours c. 30 species of long-spurred orchids and seven species of long-tongued hawkmoths, and mutualisms between moths and 'Angraecum and other deep tubular flowers' (Darwin, 1862: p. 202) probably involve a network of interacting species. We infer the evolutionary time over which Madagascan sphingids and Angraecum have interacted, based on an orchid phylogeny that includes 62 of 144 Angraecum species on Madagascar and a moth phylogeny with all nine Madagascan Sphinginae. Clock models using either rate- or fossil-based calibrations imply that the Madagascan subspecies X. morgani praedicta and the African morgani diverged 7.4 +/- 2.8 Mya, which overlaps the divergence of An. sesquipedale from its sister, Angraecum sororium, namely 7.5 +/- 5.2 Mya;since both have extremely long spurs, long spurs probably existed before that. The phylogenies moreover show that several long-tongued moths and long-spurred orchids probably coevolved on Madagascar since the mid-Miocene, although field data on the moths' levels of polyphagy and pollen transport are lacking.

The three bryophyte lineages have longy-lived gametophytes that are either bisexual, producing both male- and female gametes, or sexually specialized and then producing only one type of gamete. Phylogenies suggest repeated evolutionary switches between these systems, implying that bryophyte sex chromosomes may have been gained and lost repeatedly. How this occurred is poorly understood, even though plant sex chromosomes were first discovered in liverworts. We explain how the sex chromosomes of haploid-dominant organisms are distinct from the better-studied X-Y and Z-W systems in the tree of life, summarise what is known about their distribution and genetic composition, and present new cytogenetic data for Frullania dilatata and Plagiochila asplenioides, the former with two U chromosomes and one V chromosome, the latter with one U chromosome and two V chromosomes; male and female C-values in F. dilatata are correspondingly asymmetric (the C-value of P. asplenioides is only known for female nuclei). So far, there is a lack of high-throughput sequencing, quantification, and in situ study of the repetitive DNA, organellar DNA, and transposable elements, and it is therefore not known what causes the size difference of U and V chromosomes from the autosomes or each other. Heterochromatin was also first discovered in bryophytes, but its function in their sex regulation has not been addressed. Studies of bryophyte sex chromosomes with combined cytogenetic and genomic approaches are fundamental for fuller understanding of s sex chromosome evolution across the tree of life.

Our understanding of the evolution of plant sex chromosomes is increasing rapidly due to high-throughput sequencing data and phylogenetic and molecular-cytogenetic approaches that make it possible to infer the evolutionary direction and steps leading from homomorphic to heteromorphic sex chromosomes. Here, we focus on four species of Coccinia, a genus of 25 dioecious species, including Coccinia grandis, the species with the largest known plant Y chromosome. Based on a phylogeny for the genus, we selected three species close to C. grandis to test the distribution of eight repetitive elements including two satellites, and several plastid and mitochondrial probes, that we had previously found to have distinct accumulation patterns in the C. grandis genome. Additionally, we determined C-values and performed immunostaining experiments with (peri-)centromere-specific antibodies on two species (for comparison with C. grandis). In spite of no microscopic chromosomal heteromorphism, single pairs of chromosomes in male cells of all three species accumulate some of the very same repeats that are enriched on the C. grandis Y chromosome, pointing to either old (previous) sex chromosomes or incipient (newly arising) ones, that is, to sex chromosome turnover. A 144-bp centromeric satellite repeat (CgCent) that characterizes all C. grandis chromosomes except the Y is highly abundant in all centromeric regions of the other species, indicating that the centromeric sequence of the Y chromosome diverged very recently.

Aim Partners in co-evolutionary interactions must be ecologically interdependent and at least at some stage have matching traits and more or less overlapping ranges. As co-evolution is a process, neither the mutual dependence nor the trait and range matching are expected to be static or perfect. Here we investigate the extent of evolutionary flexibility in tight pollination mutualisms between hummingbirds and plants, ranging from straight-billed species to sicklebills. Location The Americas. Methods The five considered pollination mutualisms are between the following hummingbird and plant species: Calypte anna and Ribes speciosum (Grossulariaceae); Basilinna xantusii and Arbutus peninsularis (Ericaceae); two species of Sephanoides and Tristerix aphyllus/corymbosus (Loranthaceae); two species of Eutoxeres and 34 species of curved-corolla Centropogon (Campanulaceae); and six species of Oreotrochilus and seven species of Chuquiraga (Asteraceae). While ecological interdependence and trait matching in these mutualisms are well established, geographic occurrence data and molecular clock-based ages for the 10 clades were newly compiled. Results We found matching bird and plant stem ages in two of the five systems and (much) older bird than plant ages in the other three. The implied adaptation of plant populations to already existing hummingbird species fits with the modelled distributions. In three of the systems, the ranges of the plants overlap those of their pollinators by > 90%; conversely, the range overlap between the bird species and the plant species they pollinate is much less than that. Surprisingly, the age mismatch was greatest in the Eutoxeres/Centropogon system, in spite of the perfect morphological fit among bills and corollas, illustrating the evolutionary flexibility of these mutualisms and the apparently rapid ‘addition’ of further plant species. Main conclusions These findings illuminate the macroevolutionary assembly of hummingbird/plant mutualisms, which has been highly dynamic, even in specialized systems with perfect morphological trait fitting.

Photoperiod is only an important leaf-out regulator for woody plants in areas with short winters and in lineages that derive from lower latitudes. Consequently, photoperiod constraint on range expansion should be limited to these areas and species. The relative roles of temperature and day length in driving spring leaf unfolding are known for few species, limiting our ability to predict phenology under climate warming1,2. Using experimental data, we assess the importance of photoperiod as a leaf-out regulator in 173 woody species from throughout the Northern Hemisphere, and we also infer the influence of winter duration, temperature seasonality, and inter-annual temperature variability. We combine results from climate- and light-controlled chambers with species’ native climate niches inferred from georeferenced occurrences and range maps. Of the 173 species, only 35% relied on spring photoperiod as a leaf-out signal. Contrary to previous suggestions, these species come from lower latitudes, whereas species from high latitudes with long winters leafed out independent of photoperiod. The strong effect of species’ geographic–climatic history on phenological strategies complicates the prediction of community-wide phenological change.

The aims of this study were to synthesize data on the orogeny of the Tibetan Plateau (TP), with a focus on its elevation since the collision of the Eurasian and Indian plates, and to review the arguments in 100 phylogeny-cum-biogeography papers that have linked young inferred divergence times to recent TP uplift phases. I surveyed the literature on the geological history of the TP, focusing on different types of data used to infer its past height. I also tabulated the supposed TP history (and supporting references) in papers since 1998. Since the early 1990s, evidence from tectonics, isotopes, fossils and climate simulations increasingly indicates that the TP has been 4–5 km high since the mid-Eocene. The data also indicate that the Indian summer monsoon, South-east Asian summer monsoon, and Central Asian winter monsoon arose at different times and are unrelated to Tibetan uplift. A growing number of studies by biologists, however, are linking node ages between 0.5 and 15 Ma to specific (author-dependent) uplift phases of the TP citing geological papers that are outdated or miscited. Biogeography of the TP thus currently appears to be in a self-created bubble that encloses hundreds of authors and referees. Our understanding of the biogeography of Tibet requires up-to-date interpretation of its geological history and more fieldwork on local ecological habitat diversity, the plateau's history during the Pleistocene and the distribution of possible refugia.

Lobelioideae comprise about 1200 species in 30 genera worldwide and include famous cases of parallel evolution in the "giant rosette" lobelias occurring in East Africa, Hawaii, and Bhutan. To date, no phylogeny has included the Himalayan giant lobelia, and its age and phylogenetic distance from the Hawaiian and African giant species (the latter in the same section as the Bhutan species) are therefore unknown. Asian Lobelioideae in general have received little attention, partly because of the difficult access to material. Here we use nuclear and plastid markers of Lobelioideae (with worldwide sampling) to test the monophyly of the section that includes most Asian lobelias, and we then use a reduced concatenated matrix to resolve the position of Lobelia nubigena from Bhutan and of the likewise cold-adapted lowland species L. sessilifolia. Most sequences come from herbarium material. Lobelia nubigena diverged from its Asian lowland relatives 13.8 (12.6-15) million years ago (about the time of the Bhutan Himalaya orogeny), and in an unexpected twist, L. sessilifolia is the sister species to a huge Glade (ca. 265 species) that comprises African, South American, Asian, and the entire Hawaiian Lobelioideae radiation. The African and Hawaiian high-elevation lobelias in our sample are younger than L. nubigena, although the time when gigantism evolved in this species cannot be precisely inferred. Our results support the previously hypothesized Asian origin of (1) the Hawaiian Lobelioideae, (2) Southeast Asian islands lobelias, and (3) the African Lobelia-Rynchopetalum group, which also reached South America.

Introduction Gnetophytes, comprising the genera Ephedra, Gnetum and Welwitschia, are an understudied, enigmatic lineage of gymnosperms with a controversial phylogenetic relationship to other seed plants. Here we examined the organization of ribosomal DNA (rDNA) across representative species. Methods We applied high-throughput sequencing approaches to isolate and reconstruct rDNA units and to determine their intragenomic homogeneity. In addition, fluorescent in situ hybridization and Southern blot hybridization techniques were used to reveal the chromosome and genomic organization of rDNA. Key results The 5S and 35S rRNA genes were separate (S-type) in Gnetum montanum, Gnetum gnemon and Welwitschia mirabilis and linked (L-type) in Ephedra altissima. There was considerable variability in 5S rDNA abundance, ranging from as few as ~4000 (W. mirabilis) to >100 000 (G. montanum) copies. A similar large variation was also observed in 5S rDNA locus numbers (two to 16 sites per diploid cell). 5S rRNA pseudogenes were interspersed between functional genes forming a single unit in E. altissima and G. montanum. Their copy number was comparable or even higher than that of functional 5S rRNA genes. In E. altissima internal transcribed spacers of 35S rDNA were long and intrinsically repetitive while in G. montanum and W. mirabilis they were short without the subrepeats. Conclusions Gnetophytes are distinct from other gymnosperms and angiosperms as they display surprisingly large variability in rDNA organization and rDNA copy and locus numbers between genera, with no relationship between copy numbers and genome sizes apparent. Concerted evolution of 5S rDNA units seems to have led to the amplification of 5S pseudogenes in both G. montanum and E. altissima. Evolutionary patterns of rDNA show both gymnosperm and angiosperm features underlining the diversity of the group.