Search

Aim: Arctic plants survived the Pleistocene glaciations in unglaciated refugia. The number, ages, and locations of these refugia are often unclear. We use high‐resolution genomic data from present‐day and Little‐Ice‐Age populations of Arctic Bell‐Heather to re‐evaluate the biogeography of this species and determine whether it had multiple independent refugia or a single refugium in Beringia. Location: Circumpolar Arctic and Coastal British Columbia (BC) alpine. Taxon: Cassiope tetragona L., subspecies saximontana and tetragona, outgroup C. mertensiana (Ericaceae). Methods: We built genotyping‐by‐sequencing (GBS) libraries using Cassiope tetragona tissue from 36 Arctic locations, including two ~250‐ to 500‐year‐old populations collected under glacial ice on Ellesmere Island, Canada. We assembled a de novo GBS reference to call variants. Population structure, genetic diversity and demography were inferred from PCA, ADMIXTURE, fastsimcoal2, SplitsTree, and several population genomics statistics. Results: Population structure analyses identified 4–5 clusters that align with geographic locations. Nucleotide diversity was highest in Beringia and decreased eastwards across Canada. Demographic coalescent analyses dated the following splits with Alaska: BC subspecies saximontana (5 mya), Russia (~1.4 mya), Europe (>200–600 kya), and Greenland (~60 kya). Northern Canada populations appear to have formed during the current interglacial (7–9 kya). Admixture analyses show genetic variants from Alaska appear more frequently in present‐day than historic plants on Ellesmere Island. Conclusions: Population and demographic analyses support BC, Alaska, Russia, Europe and Greenland as all having had independent Pleistocene refugia. Northern Canadian populations appear to be founded during the current interglacial with genetic contributions from Alaska, Europe and Greenland. We found evidence, on Ellesmere Island, for continued recent gene flow in the last 250–500 years. These results suggest that a re‐analysis of other Arctic species with shallow population structure using higher resolution genomic markers and demographic analyses may help reveal deeper structure and other circumpolar glacial refugia. [ABSTRACT FROM AUTHOR]

The Arctic ecozone is undergoing a rapid transformation in response to climate change. Establishing a baseline of current Arctic biodiversity is necessary to be able to track changes in species diversity and distribution over time. Here, we report a vascular plant floristic study of Katannilik Territorial Park, Kimmirut and vicinity within Circumpolar Arctic Bioclimate Subzone D on southern Baffin Island, Nunavut, Canada. We compiled a dataset of 1596 collections gathered in the study area throughout the last century, including 838 we made in 2012. The vascular flora comprises 35 families, 98 genera, 211 species, two nothospecies and seven infraspecific taxa. We newly recorded 51 taxa in 22 families in the study area: Erigeron eriocephalus, Taraxacum holmenianum (Asteraceae), Draba arctica, D. fladnizensis, D. lactea (Brassicaceae), Campanula rotundifolia (Campanulaceae), Arenaria longipedunculata, Honckenya peploides subsp. diffusa, Sabulina rossii, Silene uralensis subsp. uralensis, Viscaria alpina (Caryophyllaceae), Carex brunnescens subsp. brunnescens, C. krausei, C. microglochin, C. subspathacea, C. williamsii, Eriophorum scheuchzeri subsp. arcticum (Cyperaceae), Andromeda polifolia, Orthilia secunda subsp. obtusata (Ericaceae), Oxytropis podocarpa (Fabaceae), Luzula groenlandica (Juncaceae), Triglochin palustris (Juncaginaceae), Utricularia ochroleuca (Lentibulariaceae), Huperzia continentalis (Lycopodiaceae), Montia fontana (Montiaceae), Corallorhiza trifida, Platanthera obtusata subsp. obtusata (Orchidaceae), Hippuris lanceolata, H. vulgaris, Plantago maritima (Plantaginaceae), Calamagrostis neglecta subsp. groenlandica, C. purpurascens, Festuca prolifera var. lasiolepis, F. rubra subsp. rubra, F. rubra subsp. arctica, Hordeum jubatum subsp. jubatum, Leymus mollis subsp. mollis, L. mollis subsp. villosissimus, Puccinellia vaginata (Poaceae), Primula egaliksensis (Primulaceae), Cryptogramma stelleri (Pteridaceae), Coptidium × spitsbergense (Ranunculaceae), Potentilla crantzii, P. hyparctica subsp. hyparctica, Rubus chamaemorus, Sibbaldia procumbens (Rosaceae), Salix fuscescens (Salicaceae), Micranthes foliolosa, M. nivalis, M. tenuis (Saxifragaceae) and Woodsia alpina (Woodsiaceae). We recorded 196 taxa in Katannilik Territorial Park (191 species, three infraspecific taxa and two nothospecies); 145 of these taxa are first records for the park. We recorded 170 taxa in Kimmirut and vicinity (166 species, three infraspecific taxa and one nothospecies) in Kimmirut and vicinity; 15 of these taxa are first records for Kimmirut and vicinity. All study area species are native, except two grasses that grew in Kimmirut: F. rubra subsp. rubra, which may have been seeded and Hordeum jubatum subsp. jubatum, of unknown origin. We summarize the distribution on Baffin Island for each taxon recorded in the study area, including several unpublished southern Baffin Island records. [ABSTRACT FROM AUTHOR]

To clarify phylogenetic relationships among grass (Poaceae) subfamilies and to better resolve the placement of Poaceae in Poales, we surveyed 17 plastid genes and associated noncoding regions (~15.5 kb per taxon, about 1/10 of the plastid genome) for exemplar representatives from 10 grass subfamilies and a broad sample of related monocots. We found general concordance in relationships and support levels among gene regions and data partitions across analyses, with some exceptions in Bayesian analyses. Different phylogenetic criteria generally agreed on backbone relationships, and the support values we inferred were generally as good as or better than those in other studies that employed more taxa for fewer genes to estimate the same backbone. Within grasses, we found robust support for the monophyly of subfamily Anomochlooideae and for the Bambusoideae-Ehrhartoideae-Pooideae (BEP) clade, and moderate support for a sister-group relationship between Bambusoideae and Pooideae. Most relationships in the strongly supported Panicoideae-Aristidoideae-Chloridoideae-Micrairoideae-Arundinoideae -Danthonioideae (PACMAD) clade were not resolved consistently, probably because the current intensive sampling of genes is still insufficient to resolve short internal branches. Our data infer a well-supported clade that includes the grass family and two small families of grass-like plants, Ecdeiocoleaceae and Joinvilleaceae, but we did not satisfactorily resolve the relationships among these three families. A generally accelerated substitution rate in Poaceae plastid genomes is shared with some, but not all, lineages that are closely related to grasses in the larger clade of commelinid monocots, which may complicate inference of the sister group of the grasses in all current studies. Key words: backbone, deep phylogeny, Ecdeiocoleaceae, Joinvilleaceae, Gramineae, rate heterogeneity. Afin de clarifier les relations phylogenetiques des sous-familles d'herbes (Poaceae) et de mieux preciser l'attribution des Poaceae dans les Poales, les auteurs ont suivi 17 genes plastidiques ainsi que des regions associees non codantes (~15.5 kb par taxon, environ 1/10 du genome plastidique) comme exemples representatifs de dix des sous-familles d'herbes, ainsi qu'un large echantillon de monocotyles apparenteees. En general, on retrouve une concordance dans les relations et les degres de support au sein des regions geniques ainsi que de la distribution des donnees sur l'ensemble des analyses, avec quelques exceptions dans les analyses bayeesiennes. Differents criteres genetiques concordent generalement avec les relations du tronc principal, et les valeurs de support deeduites sont geneeralement aussi bonnes ou meeme meilleures que celles d'autres etudes qui ont utilise plus de taxons avec moins de genes pour evaluer le meme tronc principal. Parmi les herbes, on retrouve un support robuste pour la monophylie de la sous-famille des Anomochlooideae et pour le clade des BEP (Bambusoideae-Ehrhartoideae-Pooideae), ainsi qu'un support modeere pour un groupe de relations entre les Bambusoideae et les Pooideae. On n'a pas pu resoudre de facon coherente la plupart des relations du clade PACMAD (Panicoideae-Aristidoideae-Chloridoideae-Micrairoideae-Arundinoideae -Danthonioideae) a fort support, probablement parce que l'echantillonnage intensif actuel n'est encore pas suffisant pour resoudre les ramifications internes. On deduit des donnees un clade fortement supporte qui inclut la famille des herbes et deux petites familles de plantes ressemblant a des herbes, Ecdeiocoleaceae et Joinvilleaceae, mais les auteurs n'ont pas pu resoudre de facon satisfaisante les relations entre ces familles. On observe un taux de substitution acceleree dans le genome plastidique des Poaceae commun, mais pas avec toutes les lignees, qui sont etroitement relieees aux herbes du clade etendu des monocotyles commelinides, ce qui pourrait compliquer la deduction des groupes soeurs d'herbes dans toutes les etudes actuelles. Mots-cles: tronc commun, phylogeenie profonde, Ecdeiocoleaceae, Joinvilleaceae, Gramineae, taux d'heteerogeneitee. [Traduit par la Redaction], Introduction The grasses (Poaceae) are the fourth largest family of flowering plants, with some 11000 species classified in 600-900 genera and 12 subfamilies (Campbell 1985; Clayton and Renvoize 1986; Tzvelev [...]

To investigate phylogenetic relationships among and within major lineages of Bromus, with focus on Bromus sect. Bromus, we analyzed DNA sequences from two nuclear ribosomal (ITS, ETS) and two plastid (rpl32-trnLUAG, matK) regions. We sampled 103 ingroup accessions representing 26 taxa of B. section Bromus and 15 species of other Bromus sections. Our analyses confirm the monophyly of Bromus s.l. and identify incongruence between nuclear ribosomal and plastid data partitions for relationships within and among major Bromus lineages. Results support classification of B. pumilio and B. gracillimus within B. sect. Boissiera and B. sect. Nevskiella, respectively. These species are sister groups and are closely related to B. densus (B. sect. Mexibromus) in nrDNA trees and Bromus sect. Ceratochloa in plastid trees. Bromus sect. Bromopsis is paraphyletic. In nrDNA trees, species of Bromus sects. Bromopsis, Ceratochloa, Neobromus, and Genea plus B. rechingeri of B. sect. Bromus form a clade, in which B. tomentellus is sister to a B. sect. Genea-B. rechingeri clade. In the plastid trees, by contrast, B. sect. Bromopsis species except B. tomentosus form a clade, and B. tomentosus is sister to a clade comprising B. sect. Bromus and B. sect. Genea species. Affinities of B. gedrosianus, B. pulchellus, and B. rechingeri (members of the B. pectinatus complex), as well as B. oxyodon and B. sewerzowii, are discordant between nrDNA and plastid trees. We infer these species may have obtained their plastomes via chloroplast capture from species of B. sect. Bromus and B. sect. Genea. Within B. sect. Bromus, B. alopecuros subsp. caroli-henrici, a clade comprising B. hordeaceus and B. interruptus, and B. scoparius are successive sister groups to the rest of the section in the nrDNA phylogeny. Most relationships among the remaining species of B. sect. Bromus are unresolved in the nrDNA and plastid trees. Given these results, we infer that most B. sect. Bromus species likely diversified relatively recently. None of the subdivisional taxa proposed for Bromus sect. Bromus over the last century correspond to natural groups identified in our phylogenetic analyses except for a group including B. hordeaceus and B. interruptus. [ABSTRACT FROM AUTHOR]

Abstract: To characterize higher-order phylogenetic relationships among the five families of Commelinales, we surveyed multiple plastid loci from exemplar taxa sampled broadly from the order, and from other major monocot [...]

Author(s): Jeffery M. Saarela [1, 6]; Hardeep S. Rai [1]; James A. Doyle [2]; Peter K. Endress [3]; Sarah Mathews [4]; Adam D. Marchant [5]; Barbara G. Briggs [5]; Sean [...]

The circumscription of the grass subtribe Calothecinae has undergone several changes since its description. Currently, it comprises Chascolytrum and the recently described genera Laegaardia and Paramochloa. Here we evaluate the circumscription of Calothecinae and the recently proposed infrageneric classification of Chascolytrum based on a phylogeny with more comprehensive taxon and molecular marker sampling than in previous studies. We sampled all Calothecinae genera, all but one Chascolytrum species, two South American Trisetum s.l., and representatives of the subtribes Agrostidinae, Brizinae, Echinopogoninae, Koeleriinae, Phalaridinae, and Torreyochloinae within Poaceae tribe Poeae. We performed Bayesian and Maximum Likelihood analyses of four plastid DNA regions (atpF‐atpH, matK, rps16 intron, and trnL‐trnF) and two nuclear ribosomal regions (ITS and ETS). Our results revealed that neither Calothecinae nor Chascolytrum is monophyletic, as currently recognized, because Trisetum brasiliense and Trisetum bulbosum are nested within Chascolytrum. We include these two Trisetum species in Calothecinae as incertae sedis. Laegaardia and Paramochloa form a clade that is sister to the Chascolytrum + Trisetum clade, and based on morphological characters, we transfer the former to the new subtribe Paramochloinae. Our Chascolytrum phylogeny is better resolved and supported than in previous studies, and based on these results, we divide Chascolytrum into nine genera, including two new ones: Boldrinia (gen. nov.), Calotheca, Chascolytrum, Erianthecium, Lombardochloa, Microbriza, Poidium, Rhombolytrum, and Rosengurttia (gen. nov.). We provide a key to Calothecinae genera, descriptions of the genera, nomenclatural information, and keys to species of each genus. In addition, six new combinations are proposed. [ABSTRACT FROM AUTHOR]

To investigate the evolutionary relationships and biogeographical history among the species of Calamagrostis and other members of subtribes Agrostidinae, Calothecinae, Echinopogoninae, and Paramochloinae, we generated a phylogeny based on DNA sequences from one nuclear ribosomal (ITS) and three plastid regions (rpl32‐trnL spacer, rps16‐trnK spacer, and rps16 intron). Based on our phylogeny, we identified seven species groups (clades) within Calamagrostis: the Meridionalis group comprises two species from Central and South America, the Americana group comprises species from North America, the Deyeuxia and Epigeios groups comprise species from Eurasia, the Orientalis group comprises species from East Asia, the Purpurea group comprises species from Eurasia and North America, and the Calamagrostis group comprises species from Eurasia and North America. We hypothesize that Calamagrostis originated in North America with the primary split of the Meridionalis group, followed by split between the autochthonous Americana group and two future Eurasian branches encompassing all the remaining groups, which possibly dispersed into Eurasia independently. The molecular data suggest that hybridization and genomic introgression played a prominent role in the evolutionary history of Calamagrostis. We propose a new genus, Condilorachia, segregated from Trisetum s.l., with three species from South America for which we propose new combinations: Condilorachia bulbosa, Condilorachia brasiliensis, and Condilorachia juergensii; a new combination in Greeneochloa, Greeneochloa expansa; and the subsumption of Dichelachne into Pentapogon with 20 new combinations: Pentapogon avenoides, Pentapogon brassii, Pentapogon chaseianus, Pentapogon crinita, Pentapogon densus, Pentapogon frigidus, Pentapogon gunnianus, Pentapogon hirtella, Pentapogon inaequiglumis, Pentapogon lautumia, Pentapogon micrantha, Pentapogon parva, Pentapogon quadrisetus, Pentapogon rara, Pentapogon robusta, Pentapogon scaberulus, Pentapogon sclerophyllus, Pentapogon suizanensis, Pentapogon sieberiana, and Pentapogon validus. We provide a diagnosis, description, and a key to the species of Condilorachia. [ABSTRACT FROM AUTHOR]

Victoria Island in Canada's western Arctic is the eighth largest island in the world and the second largest in Canada. Here, we report the results of a floristic study of vascular plant diversity of Victoria Island. The study is based on a specimen-based dataset comprising 7031 unique collections from the island, including some 2870 new collections gathered between 2008 and 2019 by the authors and nearly 1000 specimens variously gathered by N. Polunin (in 1947), M. Oldenburg (1940s-1950s) and S. Edlund (1980s) that, until recently, were part of the unprocessed backlog of the National Herbarium of Canada and unavailable to researchers. Results are presented in an annotated checklist, including keys and distribution maps for all taxa, citation of specimens, comments on taxonomy, distribution and the history of documentation of taxa across the island, and photographs for a subset of taxa. The vascular plant flora of Victoria Island comprises 38 families, 108 genera, 272 species, and 17 additional taxa. Of the 289 taxa known on the island, 237 are recorded from the Northwest Territories portion of the island and 277 from the Nunavut part. Thirty-nine taxa are known on the island from a single collection, seven from two collections and three from three collections. Twenty-one taxa in eight families are newly recorded for the flora of Victoria Island: Artemisia tilesii, Senecio lugens, Taraxacum scopulorum (Asteraceae); Crucihimalaya bursifolia, Draba fladnizensis, D. juvenilis, D. pilosa, D. simmonsii (Brassicaceae); Carex bigelowii subsp. bigelowii, Eriophorum russeolum subsp. albidum (Cyperaceae); Anthoxanthum monticola subsp. monticola, Bromus pumpellianus, Deschampsia cespitosa subsp. cespitosa, D. sukatschewii, Festuca rubra subsp. rubra, Lolium perenne, Poa pratensis subsp. pratensis (Poaceae); Stuckenia filiformis (Potamogetonaceae); Potentilla ×prostrata (Rosaceae); Galium aparine (Rubiaceae); and Salix ovalifolia var. ovalifolia (Salicaceae). Eight of these are new to the flora of the Canadian Arctic Archipelago: Senecio lugens, Draba juvenilis, D. pilosa, Anthoxanthum monticola subsp. monticola, Bromus pumpellianus, Deschampsia cespitosa subsp. cespitosa, Poa pratensis subsp. pratensis and Salix ovalifolia var. ovalifolia. One of these, Galium aparine, is newly recorded for the flora of Nunavut. Four first records for Victoria Island are introduced plants discovered in Cambridge Bay in 2017: three grasses (Festuca rubra subsp. rubra, Lolium perenne, and Poa pratensis subsp. pratensis) and Galium aparine. One taxon, Juncus arcticus subsp. arcticus, is newly recorded from the Northwest Territories. Of the general areas on Victoria Island that have been botanically explored the most, the greatest diversity of vascular plants is recorded in Ulukhaktok (194 taxa) and the next most diverse area is Cambridge Bay (183 taxa). The floristic data presented here represent a new baseline on which continued exploration of the vascular flora of Victoria Island - particularly the numerous areas of the island that remain unexplored or poorly explored botanically - will build. [ABSTRACT FROM AUTHOR]

The systematics of grasses has advanced through applications of plastome phylogenomics, although studies have been largely limited to subfamilies or other subgroups of Poaceae. Here we present a plastome phylogenomic analysis of 250 complete plastomes (179 genera) sampled from 44 of the 52 tribes of Poaceae. Plastome sequences were determined from high throughput sequencing libraries and the assemblies represent over 28.7 Mbases of sequence data. Phylogenetic signal was characterized in 14 partitions, including (1) complete plastomes; (2) protein coding regions; (3) noncoding regions; and (4) three loci commonly used in single and multi-gene studies of grasses. Each of the four main partitions was further refined, alternatively including or excluding positively selected codons and also the gaps introduced by the alignment. All 76 protein coding plastome loci were found to be predominantly under purifying selection, but specific codons were found to be under positive selection in 65 loci. The loci that have been widely used in multi-gene phylogenetic studies had among the highest proportions of positively selected codons, suggesting caution in the interpretation of these earlier results. Plastome phylogenomic analyses confirmed the backbone topology for Poaceae with maximum bootstrap support (BP). Among the 14 analyses, 82 clades out of 309 resolved were maximally supported in all trees. Analyses of newly sequenced plastomes were in agreement with current classifications. Five of seven partitions in which alignment gaps were removed retrieved Panicoideae as sister to the remaining PACMAD subfamilies. Alternative topologies were recovered in trees from partitions that included alignment gaps. This suggests that ambiguities in aligning these uncertain regions might introduce a false signal. Resolution of these and other critical branch points in the phylogeny of Poaceae will help to better understand the selective forces that drove the radiation of the BOP and PACMAD clades comprising more than 99.9% of grass diversity. [ABSTRACT FROM AUTHOR]

Circumscriptions of and relationships among many genera and suprageneric taxa of the diverse grass tribe Poeae remain controversial. In an attempt to clarify these, we conducted phylogenetic analyses of >2400 new DNA sequences from two nuclear ribosomal regions (ITS, including internal transcribed spacers 1 and 2 and the 5.8S gene and the 3'-end of the external transcribed spacer (ETS)) and five plastid regions (matK, trnL-trnF, atpF-atpH, psbK-psbI, psbA-rps19-trnH) and of more than 1000 new and previously published ITS sequences, focused particularly on Poeae chloroplast group 1 and including broad and increased species sampling compared to previous studies. Deep branches in the combined plastid and combined ITS+ETS trees are generally well resolved, the trees are congruent in most aspects, branch support across the trees is stronger than in trees based on only ITS and fewer plastid regions and there is evidence of conflict between data partitions in some taxa. In plastid trees, a strongly supported clade corresponds to Poeae chloroplast group 1 and includes Agrostidinae p.p., Anthoxanthinae, Aveninae s.str., Brizinae, Koeleriinae (sometimes included in Aveninae s.l.), Phalaridinae and Torreyochloinae. In the ITS+ETS tree, a supported clade includes these same tribes as well as Sesleriinae and Scolochloinae. Aveninae s.str. and Sesleriinae are sister taxa and form a clade with Koeleriinae in the ITS+ETS tree whereas Aveninae s.str. and Koeleriinae form a clade and Sesleriinae is part of Poeae chloroplast group 2 in the plastid tree. All species of Trisetum are part of Koeleriinae, but the genus is polyphyletic. Koeleriinae is divided into two major subclades: one comprises Avellinia, Gaudinia, Koeleria, Rostraria, Trisetaria and Trisetum subg. Trisetum and the other Calamagrostis/Deyeuxia p.p. (multiple species from Mexico to South America), Peyritschia, Leptophyllochloa, Sphenopholis, Trisetopsis and Trisetum subg. Deschampsioidea. Graphephorum,Trisetum cernuum, T. irazuense and T. macbridei fall in different clades of Koeleriinae in plastid vs. nuclear ribosomal trees and are likely of hybrid origin. ITS and matK trees identify a third lineage of Koeleriinae corresponding to Trisetum subsect. Sibirica and affinities of Lagurus ovatus with respect to Aveninae s.str. and Koeleriinae are incongruent in nuclear ribosomal and plastid trees, supporting recognition of Lagurus in its own subtribe. A large clade comprises taxa of Agrostidinae, Brizinae and Calothecinae, but neither Agrostidinae nor Calothecinae are monophyletic as currently circumscribed and affinities of Brizinae differ in plastid and nuclear ribosomal trees. Within this clade, one newly identified lineage comprises Calamagrostis coarctata, Dichelachne, Echinopogon (Agrostidinae p.p.) and Relchela (Calothecinae p.p.) and another comprises Chascolytrum (Calothecinae p.p.) and Deyeuxia effusa (Agrostidinae p.p.). Within Agrostidinae p.p., the type species of Deyeuxia and Calamagrostis s.str. are closely related, supporting classification of Deyeuxia as a synonym of Calamagrostis s.str. Furthermore, the two species of Ammophila are not sister taxa and are nested among different groups of Calamagrostis s.str., supporting their classification in Calamagrostis. Agrostis, Lachnagrostis and Polypogon form a clade and species of each are variously intermixed in plastid and nuclear ribosomal trees. Additionally, all but one species from South America classified in Deyeuxia sect. Stylagrostis resolve in Holcinae p.p. (Deschampsia). The current phylogenetic results support recognition of the latter species in Deschampsia and we also demonstrate Scribneria is part of this clade. Moreover, Holcinae is not monophyletic in its current circumscription because Deschampsia does not form a clade with Holcus and Vahlodea, which are sister taxa. The results support recognition of Deschampsia in its own subtribe Aristaveninae. Substantial further changes to the classification of these grasses will be needed to produce generic circumscriptions consistent with phylogenetic evidence. The following 15 new combinations are made: Calamagrostis ×calammophila, C. breviligulata, C. breviligulata subsp. champlainensis, C. xdon-hensonii, Deschampsia aurea, D. bolanderi, D. chrysantha, D. chrysantha var. phalaroides, D. eminens, D. eminens var. fulva, D. eminens var. inclusa, D. hackelii, D. ovata and D. ovata var. nivalis. D. podophora; Deschampsia parodiana is proposed; the new subtribe Lagurinae is described; and a second-step lectotype is designated for the name Deyeuxia phalaroides. [ABSTRACT FROM AUTHOR]

The article focuses on the Annual Report of the Ottawa Field Naturalist Club for the period October 2015-September 2016.

The Canadian Arctic Archipelago is a vast region of approximately 1,420,000 km2, with a flora characterized by low species diversity, low endemicity, and little influence by alien species. New records of vascular plant species are documented here based on recent fieldwork on Victoria and Baffin Islands; additional records based on recent literature sources are mentioned. This paper serves as an update to the 2007 publication Flora of the Canadian Arctic Archipelago, and brings the total number of vascular plants for the region to 375 species and infraspecific taxa, an increase of 7.7%. Three families (Amaranthaceae, Juncaginaceae, Pteridaceae) and seven genera (Cherleria L., Cryptogramma R. Br., Platanthera Rich., Sabulina Rchb., Suaeda Forssk. ex J.F. Gmel., Triglochin L., Utricularia L.) are added to the flora, and one genus is deleted (Minuartia L.). Five species are first records for Nunavut (Arenaria longipedunculata Hultén, Cryptogramma stelleri (S.G. Gmel.) Prantl, Puccinellia banksiensis Consaul, Saxifraga eschscholtzii Sternb., Utricularia ochroleuca R.W. Hartm.). [ABSTRACT FROM AUTHOR]

Five species of the grass genus Spartina are invading salt marshes along the Pacific coast of North America, of which three have been documented in British Columbia, Canada, in only the last decade. A taxonomic synopsis of the two native (S. gracilis, S. pectinata) and five introduced Spartina taxa (S. anglica, S. alterniflora, S. densiflora, S. patens, S. χtownsendii) in the Pacific Northwest is presented to facilitate their identification, including nomenclature, a new taxonomic key, new descriptions for a subset of taxa, and representative specimens. Spartina χtownsendii is newly reported for the flora of British Columbia. The non-coastal species S. pectinata is reported from an urban site in British Columbia, the first confirmed report of the taxon for the province. Lectotypes are newly designated for S. anglica C.E. Hubb., S. maritima subvar. fallax St.-Yves, and S. cynosuroides f. major St.-Yves. [ABSTRACT FROM AUTHOR]

Previous research on barcoding sedges ( Carex) suggested that basic searches within a global barcoding database would probably not resolve more than 60% of the world’s some 2000 species. In this study, we take an alternative approach and explore the performance of plant DNA barcoding in the Carex lineage from an explicitly regional perspective. We characterize the utility of a subset of the proposed protein-coding and noncoding plastid barcoding regions ( matK, rpoB, rpoC1, rbcL, atpF-atpH, psbK-psbI) for distinguishing species of Carex and Kobresia in the Canadian Arctic Archipelago, a clearly defined eco-geographical region representing 1% of the Earth’s landmass. Our results show that matK resolves the greatest number of species of any single-locus (95%), and when combined in a two-locus barcode, it provides 100% species resolution in all but one combination ( matK + atpFH) during unweighted pair-group method with arithmetic mean averages (UPGMA) analyses. Noncoding regions were equally or more variable than matK, but as single markers they resolve substantially fewer taxa than matK alone. When difficulties with sequencing and alignment due to microstructural variation in noncoding regions are also considered, our results support other studies in suggesting that protein-coding regions are more practical as barcoding markers. Plastid DNA barcodes are an effective identification tool for species of Carex and Kobresia in the Canadian Arctic Archipelago, a region where the number of co-existing closely related species is limited. We suggest that if a regional approach to plant DNA barcoding was applied on a global scale, it could provide a solution to the generally poor species resolution seen in previous barcoding studies. [ABSTRACT FROM AUTHOR]

Accurate identification of Arctic plant species is critical for understanding potential climate-induced changes in their diversity and distributions. To facilitate rapid identification we generated DNA barcodes for the core plastid barcode loci (rbcL and matK) for 490 vascular plant species, representing nearly half of the Canadian Arctic flora and 93% of the flora of the Canadian Arctic Archipelago. Sequence recovery was higher for rbcL than matK (93% and 81%), and rbcL was easier to recover than matK from herbarium specimens (92% and 77%). Distance-based and sequence-similarity analyses of combined rbcL + matK data discriminate 97% of genera, 56% of species, and 7% of infraspecific taxa. There is a significant negative correlation between the number of species sampled per genus and the percent species resolution per genus. We characterize barcode variation in detail in the ten largest genera sampled (Carex, Draba, Festuca, Pedicularis, Poa, Potentilla, Puccinellia, Ranunculus, Salix, and Saxifraga) in the context of their phylogenetic relationships and taxonomy. Discrimination with the core barcode loci in these genera ranges from 0% in Salix to 85% in Carex. Haplotype variation in multiple genera does not correspond to species boundaries, including Taraxacum, in which the distribution of plastid haplotypes among Arctic species is consistent with plastid variation documented in non-Arctic species. Introgression of Poa glauca plastid DNA into multiple individuals of P. hartzii is problematic for identification of these species with DNA barcodes. Of three supplementary barcode loci (psbA–trnH, psbK–psbI, atpF–atpH) collected for a subset of Poa and Puccinellia species, only atpF–atpH improved discrimination in Puccinellia, compared with rbcL and matK. Variation in matK in Vaccinium uliginosum and rbcL in Saxifraga oppositifolia corresponds to variation in other loci used to characterize the phylogeographic histories of these Arctic-alpine species. [ABSTRACT FROM AUTHOR]