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The eastern quoll (Dasyurus viverrinus) is an endangered marsupial native to Australia. Since the extirpation of its mainland populations in the 20th century, wild eastern quolls have been restricted to two islands at the southern end of their historical range. Eastern quolls are the subject of captive breeding programs and attempts have been made to re-establish a population in mainland Australia. However, few resources currently exist to guide the genetic management of this species. Here, we generated a reference genome for the eastern quoll with gene annotations supported by multi-tissue transcriptomes. Our assembly is among the most complete marsupial genomes currently available. Using this assembly, we infer the species' demographic history, identifying potential evidence of a long-term decline beginning in the late Pleistocene. Finally, we identify a deletion at the ASIP locus that likely underpins pelage color differences between the eastern quoll and the closely related Tasmanian devil (Sarcophilus harrisii). Genome sequencing of the eastern quoll, an endangered marsupial, describes historical population declines and identifies the likely basis of its colour differences with the closely related Tasmanian devil. [ABSTRACT FROM AUTHOR]

Co-occurring species often overlap in their use of resources and can interact in complex ways. However, shifts in environmental conditions or resource availability can lead to changes in patterns of species co-occurrence, which may be exacerbated by global escalation of human disturbances to ecosystems, including conservation-directed interventions. We investigated the relative abundance and co-occurrence of two naturally sympatric mammal species following two forms of environmental disturbance: wildfire and introduced predator control. Using 14 years of abundance data from repeat surveys at long-term monitoring sites in south-eastern Australia, we examined the association between a marsupial, the common brushtail possum Trichosurus vulpecula, and a co-occurring native rodent, the bush rat Rattus fuscipes. We asked: In a fox-controlled environment, are the abundances of common brushtail possums and bush rats affected by environmental disturbance and each other's presence? Using Bayesian regression models, we tested hypotheses that the abundance of each species would vary with changes in environmental and disturbance variables, and that the negative association between bush rats and common brushtail possums was stronger than the association between bush rats and disturbance. Our analyses revealed that bush rat abundance varied greatly in relation to environmental and disturbance variables, whereas common brushtail possums showed relatively limited variation in response to the same variables. There was a negative association between common brushtail possums and bush rats, but this association was weaker than the initial decline and subsequent recovery of bush rats in response to wildfires. Using co-occurrence analysis, we can infer negative relationships in abundance between co-occurring species, but to understand the impacts of such associations, and plan appropriate conservation measures, we require more information on interactions between the species and environmental variables. Co-occurrence can be a powerful and novel method to diagnose threats to communities and understand changes in ecosystem dynamics. [ABSTRACT FROM AUTHOR]

Dense ground cover and understory can be important as diurnal shelter for terrestrial mammals. Fire can lead to the short-term removal of much of this shelter. Here, we report on the shelter site selection of the Southern Brown Bandicoot Isoodon obesulus obesulus and Long-nosed Bandicoot Perameles nasuta eight months after a wildfire. We analysed the number of shelters, frequency of shelter use, nest size, and shelter site microhabitat. Southern Brown Bandicoots used significantly more shelters than Long-nosed Bandicoots. Both species preferred to use shelters with significantly lower levels of transmitted light than matched control areas. Within the burnt landscape, Southern Brown Bandicoots located their refuges under regrowth eucalypts, whereas Long-nosed Bandicoots showed no preference for any microhabitat. Southern Brown Bandicoots built nests significantly higher above ground than Long-nosed Bandicoots. Nests built in more dense and darker microhabitats were significantly taller than those built in more open habitats. Following fire, the Southern Brown Bandicoot required a more dense groundcover to conceal its taller nests and was able to take advantage of regenerating mallee eucalypts for shelter. Land managers need to be aware that hazard reduction burning in coastal woodland and heath will temporarily deprive Southern Brown Bandicoots of diurnal shelter sites and should, therefore, where practicable, retain patches of unburnt dense undergrowth to ensure a mosaic of different aged habitat and habitat structure. [ABSTRACT FROM AUTHOR]

Measuring, reporting, and forecasting research impact beyond academia has become increasingly important to demonstrate and understand real-world benefits. This is arguably most important in crisis disciplines such as medicine, environmental sustainability and biodiversity conservation, where application of new knowledge is urgently needed to improve health and environmental outcomes. Increasing focus on impact has prompted the development of theoretical guidance and practical tools tailored to a range of disciplines, but commensurate development of tools for conservation is still needed. In the present article, we review available tools for evaluating research impact applicable to conservation research. From these, and via a survey of conservation professionals, we compiled and ranked a list of 96 impact indicators useful for conservation science. Our indicators apply to a logic chain of inputs, processes, outputs, outcomes, and impacts. We suggest the list can act as a clear guide to realize and measure potential impacts from conservation research within and beyond academia. [ABSTRACT FROM AUTHOR]

Theories of dispersal and senescence (or aging) predict that dispersal, and ongoing survival and body condition, are influenced by evolutionary drivers, along with intrinsic and extrinsic factors. Such theories are relevant to translocations of animals where high mortality, loss of body condition, and dispersal beyond the area of release are commonly reported. However, these theories have rarely been tested using data from translocations.We explore whether theories of dispersal and senescence, together with biological knowledge and management interventions, can predict rates of postrelease dispersal, survival and change in body condition of a translocated endangered meso‐predator, the eastern quoll Dasyurus viverrinus.Captive‐bred quolls (n = 60) from three sanctuaries were translocated to an unfenced, predator‐managed reserve (Booderee National Park) over 2 years (2018, 2019). Survival, dispersal and body mass were monitored via GPS/VHF tracking and targeted trapping for 45 days postrelease.We found support for the "social subordinate" hypothesis, with smaller quolls dispersing further. Consistent with theories of senescence and the biology of our species, survival was marginally greater for females, and females regained losses in body mass in both years following release. In contrast, males recovered body condition in the first but not the second release as this coincided with breeding. Quolls that originated from the mainland sanctuary were on average heavier at release and, after accounting for weight, dispersed further.Synthesis and applications. Using theory to test outcomes of wildlife translocations can provide insights into patterns across taxa and under different conditions, enabling useful improvements to future fauna translocations. This allows for better predictions to be made about the likelihood of success from proposed translocations, changes to planning to improve outcomes (e.g., modifying sex ratios, individual selection and release cohort), and improved animal welfare as fewer animals are subjected to trials. [ABSTRACT FROM AUTHOR]

Translocated captive-bred predators are less skilled at hunting than wild-born predators and more prone to starvation post-release. Foraging in an unfamiliar environment presents many further risks to translocated animals. Knowledge of the diet and foraging behaviour of translocated animals is therefore an important consideration of reintroductions. We investigated the diet of the endangered meso-predator, the eastern quoll Dasyurus viverrinus. We also opportunistically observed foraging behaviour, enabling us to examine risks associated with foraging. Sixty captive-bred eastern quolls were reintroduced to an unfenced reserve on mainland Australia (where introduced predators are managed) over a two year period (2018, 2019). Quolls were supplementary fed macropod meat but were also able to forage freely. Dietary analysis of scats (n = 56) revealed that quolls ate macropods, small mammals, birds, invertebrates, fish, reptiles and frogs, with some between-year differences in the frequency of different diet categories. We also observed quolls hunting live prey. Quolls utilised supplementary feeding stations, indicating that this may be an important strategy during the establishment phase. Our study demonstrated that, in a novel environment, captive-bred quolls were able to locate food and hunt live prey. However, foraging was not without risks; with the ingestion of toxic substances and foraging in dangerous environments found to be potentially harmful. Knowledge of the diet of reintroduced fauna in natural landscapes is important for understanding foraging behaviour and evaluating habitat suitability for future translocations and management. [ABSTRACT FROM AUTHOR]

Reintroductions are increasingly being used to restore species and ecosystems. However, chances of successful establishment are often low. Key to improving success is careful consideration of threats, threat mitigation, monitoring, and subsequent improvement to management. We demonstrate this planning, implementation, and review process using the reintroduction of an endangered mesopredator, the eastern quoll Dasyurus viverrinus, in the first attempt to reestablish it in the wild on mainland Australia. In March 2018, 20 captive‐bred quolls (10 male, 10 female) were released into Booderee National Park and monitored via telemetry, camera, and cage trapping. There were many unknowns and, despite thorough consideration of threats, there were surprising outcomes. Within 3 months, 80% of animals had died; half due to predation, an expected threat. Other threats were unexpected yet, due to good monitoring and responsive management, were quickly detected and effective mitigation implemented. These learnings have been incorporated into revised translocation procedures. One year later, four founder quolls remained and had successfully bred. We highlight lessons applicable to other reintroductions. These are, the importance of: (1) conducting a thorough review of threats and implementing appropriate mitigation; (2) targeted monitoring and responsive management; (3) effective communication, education, and engagement with the local community and stakeholders; and (4) ensuring learnings are disseminated and incorporated into future translocation plans. Threat assessment is an important step in identifying potential reasons for failure. However, actual threats can be realized only via experimentation and monitoring. Applying this knowledge to future reintroduction attempts can increase their chance of success. [ABSTRACT FROM AUTHOR]

Summary: Monitoring is essential for effective conservation and management of threatened species and ecological communities. However, more often than not, threatened species monitoring is poorly implemented, meaning that conservation decisions are not informed by the best available knowledge. We outline challenges and provide best‐practice guidelines for threatened species monitoring, informed by the diverse perspectives of 26 conservation managers and scientists from a range of organisations with expertise across Australian species and ecosystems. Our collective expertise synthesised five key principles that aim to enhance the design, implementation and outcomes of threatened species monitoring. These principles are (i) integrate monitoring with management; (ii) design fit‐for‐purpose monitoring programs; (iii) engage people and organisations; (iv) ensure good data management; and (v) communicate the value of monitoring. We describe how to incorporate these principles into existing frameworks to improve current and future monitoring programs. Effective monitoring is essential to inform appropriate management and enable better conservation outcomes for our most vulnerable species and ecological communities. [ABSTRACT FROM AUTHOR]

In forest ecosystems, uniformity in fire spread may be moderated by topography such that sheltered areas (e.g. gullies) escape fire. However, gullies are not immune to fire and, under extreme fire weather conditions, can burn. This may compromise their habitat value, and diminish differences in faunal communities across topographical gradients. We investigated the extent to which differences in avian communities persist when subjected to uniform fire severity and fire history across the gully and slope components of a forest site. We predicted that there would be less difference with increasing fire severity or long absence of fire. Birds were surveyed at 91 paired gully/slope sites in foothill eucalypt forests, two to three years after a large, severe wildfire in south-eastern Australia. Sites were stratified in relation to four levels of fire severity (unburnt through to crown burnt) and two levels of fire history prior to the wildfire (burnt < 3 years, or > 20 years). Under similar conditions of fire severity and fire history, gullies maintained greater species richness and abundance than did slopes; averaging 13% greater species richness and 32% greater abundance, along with a distinct bird assemblage. However, contrary to predictions, topographical differences for most avian responses did not diminish with increasing fire severity or in the long absence of fire prior to the wildfire. This study highlights the value of forest gullies in maintaining or facilitating the recovery of distinct avian communities after wildfire, even when the gullies themselves have been burnt. [ABSTRACT FROM AUTHOR]

Highlights: [•] We investigated the importance to birds of unburnt patches within a mega-fire. [•] We compared differences due to severity and time-since-fire prior to the mega-fire. [•] Unburnt patches had high richness, and a distinct composition. [•] Prior fire history was less relevant to avifauna in severely burnt sites. [•] Recent planned burns may contribute to refuge habitat if subsequent fire is avoided. [ABSTRACT FROM AUTHOR]

Rapid environmental change is placing increasing pressure on the survival of many species globally. Ecological refuges can mitigate the impacts of change by facilitating the survival or persistence of organisms in the face of disturbance events that would otherwise lead to their mortality, displacement or extinction. Refuges may have a critical influence on the successional trajectory and resilience of ecosystems, yet their function remains poorly understood., We review and describe the role of refuges in faunal conservation in the context of fire, a globally important disturbance process., Refuges have three main functions in relation to fire: they enhance immediate survival during a fire event, facilitate the persistence of individuals and populations after fire and assist in the re-establishment of populations in the longer term. Refuges may be of natural or anthropogenic origin, and in each case, their creation can arise from deterministic or stochastic processes. The specific attributes of refuges that determine their value are poorly known, but include within-patch attributes relating to vegetation composition and structure; patch-scale attributes associated with their size and shape; and the landscape context and spatial arrangement of the refuge in relation to fire patterns and land uses., Synthesis and applications. Refuges are potentially of great importance in buffering the effects of wildfire on fauna. There is an urgent need for empirical data from a range of ecosystems to better understand what constitutes a refuge for different taxa, the spatial and temporal dynamics of species' use of refuges and the attributes that most influence their value to fauna. Complementary research is also required to evaluate threats to naturally occurring refuges and the potential for management actions to protect, create and enhance refuges. Knowledge of the spatial arrangement of refuges that enhance the persistence of fire-sensitive species will aid in making decisions concerning land and fire management in conservation reserves and large natural areas. Global change in the magnitude and extent of fire regimes means that refuges are likely to be increasingly important for the conservation of biodiversity in fire-prone environments. [ABSTRACT FROM AUTHOR]