34 results on '"Palaniappan Alagappan"'
Search Results
2. Affimer sandwich probes for stable and robust lateral flow assaying
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Goyal, Garima, Sharma, Antareep, Tok, Alfred Iing Yoong, Palaniappan, Alagappan, and Liedberg, Bo
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- 2022
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3. Pixelated colorimetric nucleic acid assay
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Aydın, Hakan Berk, Cheema, Jamal Ahmed, Ammanath, Gopal, Toklucu, Cihan, Yucel, Muge, Özenler, Sezer, Palaniappan, Alagappan, Liedberg, Bo, and Yildiz, Umit Hakan
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- 2020
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4. Sorbent-incorporated dipstick for direct assaying of proteases
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Klisara, Nevena, Palaniappan, Alagappan, and Liedberg, Bo
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- 2020
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5. Towards on-site visual detection of proteases in food matrices
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Klisara, Nevena, Yu, You Mei, Palaniappan, Alagappan, and Liedberg, Bo
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- 2019
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6. Functional fluorescence assay of botulinum neurotoxin A in complex matrices using magnetic beads
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Klisara, Nevena, Peters, Jeroen, Haasnoot, Willem, Nielen, Michel W.F., Palaniappan, Alagappan, and Liedberg, Bo
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- 2019
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7. Label-free electronic detection of interleukin-6 using horizontally aligned carbon nanotubes
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Chen, Hu, Choo, Teck Kian, Huang, Jingfeng, Wang, Yi, Liu, Yuanjun, Platt, Mark, Palaniappan, Alagappan, Liedberg, Bo, and Tok, Alfred Iing Yoong
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- 2016
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8. Outer‐Membrane Protease (OmpT) Based E. coli Sensing with Anionic Polythiophene and Unlabeled Peptide Substrate
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Bo Liedberg, Milan Mrksich, Sarah E. Wood, Gaurav Sinsinbar, Gopal Ammanath, Hakan U. Yildiz, Sushanth Gudlur, Palaniappan Alagappan, School of Materials Science and Engineering, and Northwestern University
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Anions ,Circular dichroism ,Polymers ,medicine.medical_treatment ,Colony Count, Microbial ,Peptide ,Thiophenes ,010402 general chemistry ,01 natural sciences ,Fluorescence ,Catalysis ,Substrate Specificity ,Escherichia coli ,medicine ,Amino Acid Sequence ,chemistry.chemical_classification ,Protease ,biology ,010405 organic chemistry ,Escherichia coli Proteins ,Substrate (chemistry) ,General Medicine ,General Chemistry ,biology.organism_classification ,OmpT ,Biological sciences::Microbiology::Bacteria [Science] ,Enzymes ,0104 chemical sciences ,Spectrometry, Fluorescence ,chemistry ,Biochemistry ,Chemistry::Analytical chemistry::Proteins [Science] ,Peptides ,Water Microbiology ,Bacterial outer membrane ,Bacteria ,Bacterial Outer Membrane Proteins ,Peptide Hydrolases - Abstract
E. coli and Salmonella are two of the most common bacterial pathogens involved in food- and water-borne-related deaths. Hence, it is critical to develop rapid and sensitive detection strategies for near-outbreak applications. Reported is a simple and specific assay to detect as low as 1 CFUmL1 of E. coli in water within 6 hours by targeting the bacterias surface protease activity. The assay relies on polythiophene acetic acid (PTAA) as an optical reporter and a short unlabeled peptide (LL37FRRV) previously optimized as a substrate for OmpT, an outer-membrane protease on E. coli. LL37FRRV interacts with PTAA to enhance its fluorescence while also inducing the formation of a helical PTAA-LL37FRRV construct, as confirmed by circular dichroism. However, in the presence of E. coli LL37FRRV is cleaved and can no longer affect the conformations and optical properties of PTAA. This ability to distinguish between an intact and cleaved peptide was investigated in detail using LL37FRRV sequence variants. Ministry of Education (MOE) Accepted version This work was funded by the Singapore Ministry of Education Academic Research Fund Tier 2 (MOE2018-T2-1-025) and the NTU-NU Institute for NanoMedicine located at the International Institute for Nanotechnology, Northwestern University, USA and the Nanyang Technological University, Singapore; Agmt10/20/14.
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- 2020
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9. A multi-layered graphene based gas sensor platform for discrimination of volatile organic compounds via differential intercalation.
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Ozkendir Inanc, Dilce, Ng, Zhi Kai, Baskurt, Mehmet, Keles, Berfin, Vardar, Gokay, Sahin, Hasan, Tsang, Siu Hon, Palaniappan, Alagappan, Yildiz, Umit Hakan, and Teo, EHT
- Abstract
Selective and sensitive detection of volatile organic compounds (VOCs) is of critical importance for environmental monitoring, disease diagnosis and industrial applications. Among VOCs, assay development for primary alcohols has captured significant research attention since their toxicity causes adverse effects on gastrointestinal and central nerve systems, resulting in irreversible blindness, and coma, and can be even fatal at high exposure levels. However, selective detection of primary alcohols is extremely challenging owing to the similarity in their molecular structure and characteristic groups. Herein, we have attempted to investigate the differential methanol (MeOH)–ethanol (EtOH) discriminative properties of single-layer, bi-layer, and multi-layer graphene morphologies. Chemiresistors fabricated using the three morphologies of graphene illustrate discriminative MeOH–EtOH responses, which is attributed to the phenomenon of differential intercalation of MeOH within layered graphene morphologies as compared to that of EtOH. This hypothesis is verified by density functional theory calculations, which revealed that the adsorption of EtOH molecules on the graphene surface is more energetically favorable as compared to that of MeOH molecules, thereby inhibiting their intercalation within the layered graphene morphologies. It is further evaluated that the degree of MeOH intercalation increases with increasing layers of graphene for obtaining differential MeOH–EtOH responses. Experimental results suggest possibilities to develop selective and sensitive MeOH assays fabricated using various graphene morphologies in a combinatorial sensor array format. [ABSTRACT FROM AUTHOR]
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- 2023
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10. Colorimetric Assaying of Exosomal Metabolic Biomarkers.
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Yan, Evelias, Goyal, Garima, Yildiz, Umit Hakan, Boehm, Bernhard O., and Palaniappan, Alagappan
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RECEPTOR for advanced glycation end products (RAGE) ,PEPTIDE nucleic acids ,EXOSOMES ,ADVANCED glycation end-products ,AMNIOTIC liquid ,EXTRACELLULAR matrix ,URINE ,SALIVA - Abstract
Exosomes released into the extracellular matrix have been reported to contain metabolic biomarkers of various diseases. These intraluminal vesicles are typically found in blood, urine, saliva, breast milk, cerebrospinal fluid, semen, amniotic fluid, and ascites. Analysis of exosomal content with specific profiles of DNA, microRNA, proteins, and lipids can mirror their cellular origin and physiological state. Therefore, exosomal cargos may reflect the physiological processes at cellular level and can potentially be used as biomarkers. Herein, we report an optical detection method for assaying exosomal biomarkers that supersedes the state-of-the-art time consuming and laborious assays such as ELISA and NTA. The proposed assay monitors the changes in optical properties of poly(3-(4-methyl-3′-thienyloxy) propyltriethylammonium bromide) upon interacting with aptamers/peptide nucleic acids in the presence or absence of target biomarkers. As a proof of concept, this study demonstrates facile assaying of microRNA, DNA, and advanced glycation end products in exosomes isolated from human plasma with detection levels of ~1.2, 0.04, and 0.35 fM/exosome, respectively. Thus, the obtained results illustrate that the proposed methodology is applicable for rapid and facile detection of generic exosomal biomarkers for facilitating diseases diagnosis. [ABSTRACT FROM AUTHOR]
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- 2023
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11. Flow-through colorimetric assay for detection of nucleic acids in plasma
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Gopal Ammanath, Jamal Ahmed Cheema, Mukti Vats, Bo Liedberg, Palaniappan Alagappan, Rohit Srivastava, Umit Hakan Yildiz, Sanjida Yeasmin, Fairuz Nabilah, Yuvasri Srinivasulu, School of Materials Science and Engineering, Interdisciplinary Graduate School (IGS), and Centre for Biomimetic Sensor Science
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Hepatitis B virus ,Point-of-Care Systems ,Peptide ,02 engineering and technology ,Hepatitis B virus DNA ,01 natural sciences ,Biochemistry ,Analytical Chemistry ,chemistry.chemical_compound ,Humans ,Environmental Chemistry ,Spectroscopy ,chemistry.chemical_classification ,Detection limit ,Chromatography ,Materials [Engineering] ,Chemistry ,010401 analytical chemistry ,Cationic polymerization ,Plasma ,021001 nanoscience & nanotechnology ,Polythiophene ,0104 chemical sciences ,MicroRNAs ,Membrane ,DNA, Viral ,Nucleic acid ,Colorimetry ,0210 nano-technology ,Colorimetric Array - Abstract
A flow-through colorimetric assay for detection of nucleic acids in plasma is reported. The proposed assay features an array of four polyvinylidene fluoride (PVDF) membranes impregnated with cationic poly (3-alkoxy-4-methylthiophene) (PT) as an optical reporter. The sensing strategy is based on monitoring the changes in optical properties of PT, upon complexation with target nucleic acids in the presence and in the absence of their corresponding complementary peptide nucleic acids (PNAs). As a proof of concept, the proposed methodology is validated using two biomarkers; lung cancer associated microRNA (mir21) and hepatitis B virus DNA (HBV-DNA). The flow-through colorimetric assay enabled detection of mir21 and HBV-DNA in plasma without requiring tedious sample pre-treatment and clean up protocols. Colorimetric responses for mir21 and HBV-DNA were obtained at nanomolar concentrations over five orders of magnitudes (from 1 nM to 10 μM), with a limit of detection of ∼0.6 nM and ∼2 nM in DI water and plasma, respectively. A logic gate system was developed to utilize the colorimetric assay responses as inputs for discrimination of mir21 and HBV-DNA and subsequently to obtain a profile of nucleic acids in samples that exceed respective clinical threshold limits, thereby enabling rapid and point of care (POC) disease diagnosis. Furthermore, the proposed methodology can be utilized for detection of a large number of nucleic acids in plasma by extending the array of PT impregnated membranes incorporated with their corresponding complementary PNAs. Accepted version
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- 2019
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12. Magnetic field assisted preconcentration of biomolecules for lateral flow assaying
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Bo Liedberg, Alfred Iing Yoong Tok, Rajaseger Ganapathy, Palaniappan Alagappan, Chleo Lee, Antareep Sharma, School of Materials Science and Engineering, Interdisciplinary Graduate School (IGS), and Center for Biomimetic Sensor Science
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Analyte ,Passivation ,Protein Extraction ,02 engineering and technology ,Conjugated system ,010402 general chemistry ,01 natural sciences ,Materials Chemistry ,Molecule ,Electrical and Electronic Engineering ,Instrumentation ,chemistry.chemical_classification ,Chromatography ,Materials [Engineering] ,Chemistry ,Biomolecule ,Extraction (chemistry) ,Metals and Alloys ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Membrane ,Yield (chemistry) ,Lateral Flow Assay ,0210 nano-technology - Abstract
Lateral flow assays (LFA) have been extensively explored for rapid and cost effective point-of-care diagnostics. Typically, LFA responses are influenced by the complexity of sample matrices containing analogues or molecules that may potentially yield non-specific responses, for instance, when assaying for biomarkers in blood, serum and plasma. Therefore, isolation of analytes of interest from sample matrices would significantly improve the LFA responses. Herein, we report a magnetic field assisted preconcentration approach for extraction and assay of proteins in an LFA format. Cardiac marker, Troponin (cTnICT complex), is utilized as a model system for validation of the proposed approach. Magnetic fields of different strengths are evaluated for retaining cTnICT on an LFA membrane utilizing magnetic beads conjugated with anti-Troponin I (anti-TnI) antibodies. The sample matrix components subsequently flows through to the absorbent pad via a hydrophilic passivation layer that is protecting the capturing anti-Troponin C (anti-TnC) antibodies in the test zone. Isolated TnI-magnetic bead complexes are then released to flow downstream along the LFA strip to the test zone upon removal of magnetic field and the passivation layer. The capture of cTnICT magnetic bead complexes at the test zone produces a characteristic brownish band, enabling concentration dependant visual detection of cTnICT. Experimental results indicate that the assay yields pM level sensitivity within 15 min using very low sample volumes (
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- 2019
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13. Colorimetric Detection of Salivary α-Amylase Using Maltose as a Noncompetitive Inhibitor for Polysaccharide Cleavage
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Iuna Tsyrulneva, Bo Liedberg, Palaniappan Alagappan, School of Materials Science and Engineering, School of Mechanical and Aerospace Engineering, Institute for Sports Research, and Center for Biomimetic Sensor Science
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Adult ,Male ,Paper ,Saliva ,Bioengineering ,02 engineering and technology ,Polysaccharide ,01 natural sciences ,chemistry.chemical_compound ,Non-competitive inhibition ,Limit of Detection ,Humans ,α-Amylase ,Enzyme Inhibitors ,Maltose ,Instrumentation ,Fluid Flow and Transfer Processes ,Detection limit ,chemistry.chemical_classification ,Aqueous solution ,Chromatography ,Paper-based Strip ,Chemistry ,Process Chemistry and Technology ,010401 analytical chemistry ,Substrate (chemistry) ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Kinetics ,Salivary alpha-Amylases ,Mechanical engineering [Engineering] ,Colorimetry ,Female ,Phadebas ,0210 nano-technology ,Trisaccharides - Abstract
This paper describes an approach for colorimetric detection of salivary α-amylase, one of the potential biomarkers of autonomic nervous system (ANS) activity, for enabling assessment of fatigue. The ability of α-amylase to cleave α-bonds of polysaccharides is utilized for developing a colorimetric assay. In the proposed approach, 2-chloro-4-nitrophenyl-α-d-maltotrioside as substrate releases a colored byproduct upon cleavage by salivary α-amylase. Introduction of maltose as a noncompetitive inhibitor yields desirable linear responses in the physiologically relevant concentration range (20–500 μg/mL) with a limit of detection (LOD) of 8 μg/mL (in aqueous solution). The concentrations of substrate and noncompetitive inhibitor are subsequently optimized for colorimetric detection of salivary α-amylase. A facile paper-based “strip” assay is proposed for analysis of human saliva samples with marginal interference from saliva components. The proposed assay is rapid, specific, and easy-to-implement for colorimetric detection of salivary α-amylase between 20 and 500 μg/mL. Complementary RGB (red, green, blue components) analysis offers quantitative detection with a LOD of 11 μg/mL. The two assay formats are benchmarked against the Phadebas test, a state of the art method for spectrophotometric detection of α-amylase. The reported paper-based methodology possesses a high potential for estimation of altered ANS responses toward stressors that possibly could find applications in assessment of fatigue and for monitoring onset of fatigue. Nanyang Technological University Accepted version This work is supported by Provost’s office and Institute for Sports Research (ISR), School of Mechanical and Aerospace Engineering, Nanyang Technological University, Singapore.
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- 2019
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14. Point of care testing of sports biomarkers: Potential applications, recent advances and future outlook
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Antareep Sharma, Bo Liedberg, Palaniappan Alagappan, Alfred Iing Yoong Tok, Interdisciplinary Graduate School (IGS), School of Materials Science and Engineering, and Center for Biomimetic Sensor Science
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Materials [Engineering] ,Computer science ,Sensing applications ,Point-of-care testing ,Sports science ,010401 analytical chemistry ,01 natural sciences ,Sports Science ,0104 chemical sciences ,Analytical Chemistry ,Biosensors ,Risk analysis (engineering) ,Chemistry [Science] ,human activities ,Spectroscopy - Abstract
Point of care testing (POCT) platforms are analytical devices used for rapid on-site sensing applications. POCT in sports science has attracted significant attention as the markers related to physiological changes and metabolism can be analysed on-site for monitoring an athlete's health, performance, recovery and even for doping control. POCT platforms also possess the potential to facilitate trainers in optimizing the training regimes for preventing injuries, track their nutrition, and could potentially assist sports committees to enforce effective doping control measures during and outside competitions. This review is a consolidated report on emerging trends in POCT platforms in sports science. The methodologies reported thus far that have already been applied or possess a potential to be applied for detection of various sports biomarkers are elaborated. A comprehensive outlook is further provided, which would aid efforts on development of POCT platforms for a wide range of applications. Ministry of Education (MOE) Nanyang Technological University We would like to thank to MOE Tier 1 Grant, Singapore (Grant number 2018-T1-001-079) and Provost Office NTU, Singapore for supporting this work.
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- 2021
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15. Mesoporous silica thin films prepared by argon plasma treatment of sol–gel-derived precursor
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Zhang, Jian, Palaniappan, Alagappan, Su, Xiaodi, and Tay, Francis E.H.
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- 2005
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16. Gadolinium and Polythiophene Functionalized Polyurea Polymer Dots as Fluoro-Magnetic Nanoprobes.
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Karabacak, Soner, Palaniappan, Alagappan, Tony, Tsang Siu Hon, Edwin, Teo Hang Tong, Gulyás, Balázs, Padmanabhan, Parasuraman, and Yildiz, Ümit Hakan
- Abstract
A rapid and one-pot synthesis of poly 3-thiopheneacetic acid (PTAA) functionalized polyurea polymer dots (Pdots) using polyethyleneimine and isophorone diisocyanate is reported. The one-pot mini-emulsion polymerization technique yielded Pdots with an average diameter of ~20 nm. The size, shape, and concentration of the surface functional groups could be controlled by altering the synthesis parameters such as ultrasonication time, concentration of the surfactant, and crosslinking agent, and the types of isocyanates utilized for the synthesis. Colloidal properties of Pdots were characterized using dynamic light scattering and zeta potential measurements. The spherical geometry of Pdots was confirmed by scanning electron microscopy. The Pdots were post-functionalized by 1,4,7,10 tetraazacyclododecane-1,4,7,10-tetraacetic acid for chelating gadolinium nanoparticles (Gd3+) that provide magnetic properties to the Pdots. Thus, the synthesized Pdots possess fluorescent and magnetic properties, imparted by PTAA and Gd3+, respectively. Fluorescence spectroscopy and microscopy revealed that the synthesized dual-functional Gd3+-Pdots exhibited detectable fluorescent signals even at lower concentrations. Magnetic levitation experiments indicated that the Gd3+-Pdots could be easily manipulated via an external magnetic field. These findings illustrate that the dua- functional Gd3+-Pdots could be potentially utilized as fluorescent reporters that can be magnetically manipulated for bioimaging applications. [ABSTRACT FROM AUTHOR]
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- 2022
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17. A Perspective on Polythiophenes as Conformation Dependent Optical Reporters for Label-Free Bioanalytics.
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Sinsinbar, Gaurav, Palaniappan, Alagappan, Yildiz, Umit Hakan, and Bo Liedberg
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- 2022
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18. Functionalized mesoporous silica films for gas sensing applications
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Palaniappan, Alagappan, Su, Xiaodi, and Tay, Francis E. H.
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- 2006
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19. Visual detection of Al3+ ions using conjugated copolymer-ATP supramolecular complex
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Bo Liedberg, Palaniappan Alagappan, Meng-Che Tu, Deepa Rajwar, Umit Hakan Yildiz, Gopal Ammanath, Tr147447, Yıldız, Ümit Hakan, and Izmir Institute of Technology. Chemistry
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Polymers ,Inorganic chemistry ,02 engineering and technology ,Conjugated polymers ,Conjugated system ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Fluorescence ,Analytical Chemistry ,chemistry.chemical_compound ,Adenosine Triphosphate ,Tap water ,Cations ,Copolymer ,Environmental Chemistry ,Organic chemistry ,Colorimetry ,Spectroscopy ,Naked eye detection ,Aluminum ion sensors ,integumentary system ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Monomer ,chemistry ,Polythiophene ,Naked eye ,Supramolecular chemistry ,0210 nano-technology ,Aluminum - Abstract
A colorimetric Al3+ sensor based on fluorescence recovery of a conjugated copolymer-ATP complex is proposed. An optimized ratio of two polythiophene (PT) monomers is utilized to synthesize copolymer (CP) that yielded maximized colorimetric response for Al3+ in deionized (DI) and tap water. The electrostatic disassembly of CP-ATP upon addition of Al3+ led to an evident visual color change. The lowest concentration of Al3+ for naked eye observation is around 4 μM, which is below the threshold levels in drinking water according to European Economic Community (EEC) standard. Besides, the proposed assay showed a similar response to Al3+ in tap water. The proposed methodology showed selective and sensitive detection for Al3+ in analytically relevant concentration ranges without involving sophisticated instrumentation, illustrating the applicability for on-site drinking water monitoring., MOE (RG 82/12); Provost Office Nanyang Technological University, Singapore
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- 2016
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20. Immunosensor based on carbon nanotube/manganese dioxide electrochemical tags
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Shabbir Moochhala, Bo Liedberg, Meng-Che Tu, Yuxi Wang, Palaniappan Alagappan, and Han-Yi Chen
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Composite number ,Glassy carbon electrode ,Analytical chemistry ,chemistry.chemical_element ,Biosensing Techniques ,Manganese ,Carbon nanotube ,Electrochemistry ,Biochemistry ,Antibodies ,Analytical Chemistry ,law.invention ,chemistry.chemical_compound ,law ,Humans ,Environmental Chemistry ,Hydrogen peroxide ,Electrodes ,Spectroscopy ,Detection limit ,Chitosan ,Nanotubes, Carbon ,Oxides ,Electrochemical Techniques ,Hydrogen Peroxide ,Manganese Compounds ,chemistry ,alpha-Fetoproteins ,Oxidation-Reduction ,Biosensor ,Nuclear chemistry - Abstract
This article reports on carbon nanotube/manganese dioxide (CNT-MnO2) composites as electrochemical tags for non-enzymatic signal amplification in immunosensing. The synthesized CNT-MnO2 composites showed good electrochemical activity, electrical conductivity and stability. The electrochemical signal of CNT-MnO2 composites coated glassy carbon electrode (GCE) increased by nearly two orders of magnitude compared to bare GCE in hydrogen peroxide (H2O2) environment. CNT-MnO2 composite was subsequently validated as electrochemical tags for sensitive detection of α-fetoprotein (AFP), a tumor marker for diagnosing hepatocellular carcinoma. The electrochemical immunosensor demonstrated a linear response on a log-scale for AFP concentrations ranging from 0.2 to 100 ng mL(-1). The limit of detection (LOD) was estimated to be 40 pg mL(-1) (S/N=3) in PBS buffer. Further measurements using AFP spiked plasma samples revealed the applicability of fabricated CNT-MnO2 composites for clinical and diagnostic applications.
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- 2015
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21. Stoichiometric Tuning of PNA Probes to Au0.8Ag0.2 Alloy Nanoparticles for Visual Detection of Nucleic Acids in Plasma.
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Goyal, Garima, Ammanath, Gopal, Palaniappan, Alagappan, and Liedberg, Bo
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- 2020
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22. Colorimetric Urinalysis for On-Site Detection of Metabolic Biomarkers.
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Yeasmin, Sanjida, Ammanath, Gopal, Ali, Yusuf, Boehm, Bernhard O., Yildiz, Umit Hakan, Palaniappan, Alagappan, and Liedberg, Bo
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- 2020
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23. Supramolecular β‐Sheet Suckerin–Based Underwater Adhesives.
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Deepankumar, Kanagavel, Lim, Chanoong, Polte, Ingmar, Zappone, Bruno, Labate, Cristina, De Santo, Maria P., Mohanram, Harini, Palaniappan, Alagappan, Hwang, Dong Soo, and Miserez, Ali
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ADHESIVES ,CYTOSKELETAL proteins ,DOPA ,ESCHERICHIA coli ,DESMOGLEINS ,ADHESION ,AMYLOID beta-protein - Abstract
Nature has evolved several molecular strategies to ensure adhesion in aqueous environments, where artificial adhesives typically fail. One recently‐unveiled molecular design for wet‐resistant adhesion is the cohesive cross‐β structure characteristic of amyloids, complementing the well‐established surface‐binding strategy of mussel adhesive proteins based on 3,4‐l‐dihydroxyphenylalanine (Dopa). Structural proteins that self‐assemble into cross β‐sheet networks are the suckerins discovered in the sucker ring teeth of squids. Here, light is shed on the wet adhesion of cross‐β motifs by producing recombinant suckerin‐12, naturally lacking Dopa, and investigating its wet adhesion properties. Surprisingly, the adhesion forces measured on mica reach 70 mN m−1, exceeding those measured for all mussel adhesive proteins to date. The pressure‐sensitive adhesion of artificial suckerins is largely governed by their cross‐β motif, as evidenced using control experiments with disrupted cross‐β domains that result in complete loss of adhesion. Dopa is also incorporated in suckerin‐12 using a residue‐specific incorporation strategy that replaces tyrosine with Dopa during expression in Escherichia coli. Although the replacement does not increase the long‐term adhesion, it contributes to the initial rapid contact and enhances the adsorption onto model oxide substrates. The findings suggest that suckerins with supramolecular cross‐β motifs are promising biopolymers for wet‐resistant adhesion. [ABSTRACT FROM AUTHOR]
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- 2020
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24. Hand-Held Volatilome Analyzer Based on Elastically Deformable Nanofibers.
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Yucel, Muge, Akin, Osman, Cayoren, Mehmet, Akduman, Ibrahim, Palaniappan, Alagappan, Liedberg, Bo, Hizal, Gurkan, Inci, Fatih, and Yildiz, Umit Hakan
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- 2018
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25. Vapor phase solvatochromic responses of polydiacetylene embedded matrix polymers.
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Tu, Meng-Che, Cheema, Jamal Ahmed, Yildiz, Umit Hakan, Palaniappan, Alagappan, and Liedberg, Bo
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The solvatochromic response of polydiacetylene (PDA) in the vapor phase is enabled upon incorporation with matrix polymers such as polyvinylpyrrolidone (PVP), polyethylene glycol (PEG), polyacrylic acid (PAA), and poly-4-vinylpyridine (P4VP). The matrix polymers provide a soft/gel-like framework for accommodating photopolymerized PDA, while facilitating its conformational alternations upon interaction with preconcentrated volatile organic compounds (VOCs). The matrix polymers enabled the differentiation of VOCs owing to their varying morphology, chemical affinity and solubility in VOCs. The ratios between PDA and the matrix polymers are optimized according to the obtained solvatochromic responses evaluated in varying temperature, humidity and storage conditions. As a proof of concept, a finger-print array for differentiation of 7 VOCs is demonstrated using matrix polymer-embedded PDA. The obtained results indicate that the response time and sensitivity of the proposed methodology supersedes previous reports on solvatochromic VOC assays. Furthermore, the proposed methodology would enable differentiation of a wide range of VOCs upon incorporation of additional matrix polymers with varying sorption properties. [ABSTRACT FROM AUTHOR]
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- 2017
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26. A review on electronic bio-sensing approaches based on non-antibody recognition elements.
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Chen, Hu, Huang, Jingfeng, Palaniappan, Alagappan, Wang, Yi, Liedberg, Bo, Platt, Mark, and Tok, Alfred Iing Yoong
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BIOSENSORS ,LIPOSOMES ,APTAMERS ,PEPTIDOMIMETICS ,FIELD-effect transistors ,ANTIGEN-antibody reactions - Abstract
In this review, recent advances in the development of electronic detection methodologies based on non-antibody recognition elements such as functional liposomes, aptamers and synthetic peptides are discussed. Particularly, we highlight the progress of field effect transistor (FET) sensing platforms where possible as the number of publications on FET-based platforms has increased rapidly. Biosensors involving antibody–antigen interactions have been widely applied in diagnostics and healthcare in virtue of their superior selectivity and sensitivity, which can be attributed to their high binding affinity and extraordinary specificity, respectively. However, antibodies typically suffer from fragile and complicated functional structures, large molecular size and sophisticated preparation approaches (resource-intensive and time-consuming), resulting in limitations such as short shelf-life, insufficient stability and poor reproducibility. Recently, bio-sensing approaches based on synthetic elements have been intensively explored. In contrast to existing reports, this review provides a comprehensive overview of recent advances in the development of biosensors utilizing synthetic recognition elements and a detailed comparison of their assay performances. Therefore, this review would serve as a good summary of the efforts for the development of electronic bio-sensing approaches involving synthetic recognition elements. [ABSTRACT FROM AUTHOR]
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- 2016
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27. Detection of Matriiysin Activity Using Polypeptide Functionalized Reduced Graphene Oxide Field-Effect Transistor Sensor.
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Hu Chen, Peng Chen, Jingfeng Huang, Selegard, Robert, Platt, Mark, Palaniappan, Alagappan, Aili, Daniel, Alfred ling Yoong Tok, and Bo Liedberg
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- 2016
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28. Highly manufacturable graphene oxide biosensor for sensitive Interleukin-6 detection.
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Huang, Jingfeng, Chen, Hu, Niu, Wenbin, Fam, Derrick W. H., Palaniappan, Alagappan, Larisika, Melanie, Faulkner, Steve H., Nowak, Christoph, Nimmo, Myra A., Liedberg, Bo, and Tok, Alfred I. Y.
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- 2015
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29. Reporter-encapsulated liposomes on graphene field effect transistors for signal enhanced detection of physiological enzymes.
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Chen, Hu, Lim, Seng Koon, Chen, Peng, Huang, Jingfeng, Wang, Yi, Palaniappan, Alagappan, Platt, Mark, Liedberg, Bo, and Tok, Alfred Iing Yoong
- Abstract
A novel approach for enzymatic assay using reporter-encapsulated liposomes on graphene field effect transistors (FET) is proposed. This approach involves real time monitoring of drain current (I
d ) of reduced graphene oxide (rGO) upon rupture of reporter-encapsulated 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphatidylcholine (POPC) liposomes triggered by enzymes. For validation of the proposed approach, 2,4,6-trinitrophenol (TNP) is used as the reporter for specific detection of phospholipase A2 (PLA2 ), a key enzyme in various membrane related physiological processes. Experimental results revealed that Id increased with PLA2 concentration, which is attributed to the interaction between released TNP and rGO. The limit of detection (LOD) achieved by the proposed approach was 80 pM, which is superior to most assays reported previously and much lower than the cut-off level of circulating secretory PLA2 (2.07 nM). Besides the high accuracy of the electronic detection methodology, the signal enhancement effect realized by the excess concentration of TNP (approximately 1 mM) in liposomes is believed to be the main reason for the significantly enhanced sensitivity of the proposed assay, indicating great potential for further improvement in the sensitivity by increasing the concentration of TNP. In addition, the proposed approach is rapid (incubation time ≤ 10 min) and label-free, thus showing great potential for practical applications in the future. [ABSTRACT FROM AUTHOR]- Published
- 2015
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30. Synergetically Enhanced Near-Infrared Photoresponse of Reduced Graphene Oxide by Upconversion and Gold Plasmon.
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Niu, Wenbin, Chen, Hu, Chen, Rui, Huang, Jingfeng, Palaniappan, Alagappan, Sun, Handong, Liedberg, Bo Gunnar, and Tok, Alfred Iing Yoong
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- 2014
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31. Preparation of mesoporous silica films using sol–gel process and argon plasma treatment
- Author
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Palaniappan, Alagappan, Zhang, Jian, Su, Xiaodi, and Tay, Francis E.H.
- Subjects
- *
SILICA , *COLLOIDS , *PLASMA gases , *SCANNING electron microscopes - Abstract
This Letter demonstrates the first attempt of using sol–gel technique in combination with argon plasma calcination for the preparation of mesoporous silica films. CTAB is used as an organic template to generate the porous structure upon removal by the argon plasma treatment. Field emission scanning electron microscope, Fourier transform infrared spectroscopy, small angle X-ray scattering, N2-sorption experiment and nanoindentation technique are used for characterization. Results show that the obtained films have identical chemical structure and comparable mechanical properties with those prepared using thermal calcination. The plasma parameters have distinct influences on the thickness and mesoporous property of the films. [Copyright &y& Elsevier]
- Published
- 2004
- Full Text
- View/download PDF
32. Laminated, microfluidic-integrated carbon nanotube based biosensors.
- Author
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Tey, Ju Nie, Wijaya, I Putu Mahendra, Wang, Zongbin, Goh, Wei Hau, Palaniappan, Alagappan, Mhaisalkar, Subodh G., Rodriguez, Isabel, Dunham, Simon, and Rogers, John A.
- Subjects
CARBON nanotubes ,TRANSISTORS ,BIOSENSORS ,SEMICONDUCTORS ,ELECTRODES ,SUBSTRATES (Materials science) - Abstract
In this communication, a laminated, flexible, microfluidic-integrated, all CNT based liquid-gated transistor and biosensor are reported that comprises single walled CNTs for both the semiconducting channel as well as the contact electrodes. The proposed architecture eliminates the need for lithography, electrode definition processes, and also circumvents substrate surface compatibility issues. Real-time detection of 1 pM poly-L-lysine in a liquid-gated transistor comprising only two materials, single walled CNTs and polydimethoxysilane substrate with microfluidic channel, is demonstrated. [ABSTRACT FROM AUTHOR]
- Published
- 2009
- Full Text
- View/download PDF
33. Protease functional assay on membrane.
- Author
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Goyal, Garima, Palaniappan, Alagappan, and Liedberg, Bo
- Subjects
- *
GOLD nanoparticles , *PROTEOLYTIC enzymes , *DETECTION limit , *DISEASE progression - Abstract
• A facile and sensitive protease assay on a paper membrane is reported. • The paper based assay yields a LOD that is four times better than the conventional solution-based assays. • Naked eye observable responses is obtained for the active form of proteases. • MMP-7 assay in synthetic urine is demonstrated with responses comparable to that of responses in buffer. • The proposed approach is generic for detection of a wide range of proteases. Targeting enzymes, proteases in particular, using various assay formats has attracted considerable interest for early disease diagnosis. While affinity-based assays that report the presence of proteases in samples have been widely explored, it is of utmost importance to develop functional assays that provide information on the activity of proteases for a more precise indication of the disease state and progression. Herein, we report a paper-based functional assay that yields naked eye observable and concentration dependent responses for the active form of proteases. The paper-based assay involves a facile single step fabrication process of depositing protease specific peptide functionalized gold nanoparticles on paper membranes. Matrilysin is used as a model protease to validate the proposed methodology. The proteolysis-driven aggregation of nanoparticles on the membrane yields a colorimetric response that has limit of detection that is ∼4 times lower (3.1 μg/mL) than for the same assay performed in homogeneous solution (12.5 μg/mL). To the best of our knowledge, this is the first report on heterogeneous protease assay on paper relying on aggregation of peptide-functionalized nanoparticles. The approach easily can be extended to assay other enzymes by functionalizing the gold nanoparticles using specific peptides. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
34. Mussel adhesion is dictated by time-regulated secretion and molecular conformation of mussel adhesive proteins.
- Author
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Petrone, Luigi, Kumar, Akshita, Sutanto, Clarinda N., Patil, Navinkumar J., Kannan, Srinivasaraghavan, Palaniappan, Alagappan, Amini, Shahrouz, Zappone, Bruno, Verma, Chandra, and Miserez, Ali
- Published
- 2015
- Full Text
- View/download PDF
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