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Narragansett Bay is an estuarine system in the western North Atlantic Ocean that harbors a diverse marine flora, providing structure, habitat, and food for native biodiversity. This area has been the center of numerous environmental, biological, ecological, and oceanographic studies; however, marine macroalgae have not been extensively examined using modern molecular methods. Here, we document the biodiversity of the red algal order Ceramiales based on DNA sequence comparisons of the 3′ end of the RuBisCo large subunit (rbcL-3P) and the universal plastid amplicon (UPA). Thirty-seven distinct species of this order were identified and validated with molecular data, including five new species reports and at least one new report of an introduced species, Antithamnionella spirographidis, in the vicinity of Narraganset Bay. Novel sequence data were generated for numerous species, and it was discovered that the UPA marker, which has been less frequently used in red algal floristics, revealed an identical inventory of ceramialean algae as the rbcL-3P marker. Thus, the shorter length of the UPA marker holds promise for DNA metabarcoding studies that seek to elucidate biodiversity across algal phyla. [ABSTRACT FROM AUTHOR]

Long-term ecological time series provide a unique perspective on the emergent properties of ecosystems. In aquatic systems, phytoplankton form the base of the food web and their biomass, measured as the concentration of the photosynthetic pigment chlorophyll α (chl α), is an indicator of ecosystem quality. We analyzed temporal trends in chl α from the Long-Term Plankton Time Series in Narragansett Bay, Rhode Island, USA, a temperate estuary experiencing long-term warming and changing anthropogenic nutrient inputs. Dynamic linear models were used to impute and model environmental variables (1959 to 2019) and chl α concentrations (1968 to 2019). A long-term chl α decrease was observed with an average decline in the cumulative annual chl α concentration of 49% and a marked decline of 57% in winter-spring bloom magnitude. The long-term decline in chl α concentration was directly and indirectly associated with multiple environmental factors that are impacted by climate change (e.g., warming temperatures, water column stratification, reduced nutrient concentrations) indicating the importance of accounting for regional climate change effects in ecosystem-based management. Analysis of seasonal phenology revealed that the winter-spring bloom occurred earlier, at a rate of 4.9 ± 2.8 d decade-1. Finally, the high degree of temporal variation in phytoplankton biomass observed in Narragansett Bay appears common among estuaries, coasts, and open oceans. The commonality among these marine ecosystems highlights the need to maintain a robust set of phytoplankton time series in the coming decades to improve signal-to-noise ratios and identify trends in these highly variable environments. [ABSTRACT FROM AUTHOR]

Narragansett Bay is an estuarine system in the western North Atlantic Ocean that harbors a diverse marine flora, providing structure, habitat, and food for native biodiversity. This area has been the center of numerous environmental, biological, ecological, and oceanographic studies; however, marine macroalgae have not been extensively examined using modern molecular methods. Here, we document the biodiversity of the red algal order Ceramiales based on DNA sequence comparisons of the 3′ end of the RuBisCo large subunit (rbcL-3P) and the universal plastid amplicon (UPA). Thirty-seven distinct species of this order were identified and validated with molecular data, including five new species reports and at least one new report of an introduced species, Antithamnionella spirographidis, in the vicinity of Narraganset Bay. Novel sequence data were generated for numerous species, and it was discovered that the UPA marker, which has been less frequently used in red algal floristics, revealed an identical inventory of ceramialean algae as the rbcL-3P marker. Thus, the shorter length of the UPA marker holds promise for DNA metabarcoding studies that seek to elucidate biodiversity across algal phyla.

Anthropogenic sources of nutrients cause eutrophication in coastal waters. Narraganset Bay (USA), the largest estuary in New England, has large seasonal zones of hypoxia. In response, management strategies have been implemented to reduce nutrient loadings. In this study, a mechanistic, mass balance fate and transport modeling framework was developed and applied to Narragansett Bay to improve our understanding of the processes governing hypoxia. Discrete and continuous observations were used for model comparison and evaluation. Simulations captured the general trends and patterns in dissolved oxygen (DO) with depth and space. Simulations were unable to capture the wide diurnal range of observed continuous DO and phytoplankton concentrations, potentially suggesting the need for improved understanding of processes at this time scale. Mechanistic modelling scenarios were performed to investigate how different sources of nutrients affect DO. Results suggest tributary sources of nitrogen affected upper layers of DO, while sediment oxygen demand and nutrient fluxes affected deeper waters. This work highlights the importance of understanding and simulating the legacy effects of historic nutrient loading to estuary systems to understand the magnitude and timing of long-term recovery due to reductions in nutrient loadings. [ABSTRACT FROM AUTHOR]

Numerous per‐ and polyfluoroalkyl substances (PFAS) are of growing concern worldwide due to their ubiquitous presence, bioaccumulation and adverse effects. Surface waters in the United States have displayed elevated concentrations of PFAS, but so far discrete water sampling has been the commonly applied sampling approach. In the present study we field‐tested a novel integrative passive sampler, a microporous polyethylene tube, and derived sampling rates (Rs) for nine PFAS in surface waters. Three sampling campaigns were conducted, deploying polyethylene tube passive samplers in the effluent of two wastewater treatment plant (WWTP) effluents and across Narragansett Bay (Rhode Island, USA) for 1 month each in 2017 and 2018. Passive samplers exhibited linear uptake of PFAS in the WWTP effluents over 16–29 days, with in situ Rs for nine PFAS ranging from 10 ml day−1 (perfluoropentanoic acid) to 29 ml day−1 (perfluorooctanesulfonic acid). Similar sampling rates of 19 ± 4.8 ml day−1 were observed in estuarine field deployments. Applying these Rs values in a different WWTP effluent predicted dissolved PFAS concentrations mostly within 50% of their observations in daily composite water samples, except for perfluorobutanoic acid (where predictions from passive samplers were 3 times greater than measured values), perfluorononanoic acid (1.9 times), perfluorodecanoic acid (1.7 times), and perfluoropentanesulfonic acid (0.1 times). These results highlight the potential use of passive samplers as measurement and assessment tools of PFAS in dynamic aquatic environments. Environ Toxicol Chem 2022;41:2375–2385. © 2022 SETAC [ABSTRACT FROM AUTHOR]

• High-resolution imaging can reveal relationships between phytoplankton genera. • Pseudo-nitzschia tends to bloom concurrently with or right after other phytoplankton. • Such bloom periods coincide with higher water temperatures and lower salinity. • The width of Pseudo-nitzschia chains or their estimated biovolume may be used to approximate harmful algal bloom risk in the absence of toxin data. Phytoplankton populations in the natural environment interact with each other. Despite rising global concern with Pseudo-nitzschia blooms, which can produce the potent neurotoxin domoic acid, we still do not fully understand how other phytoplankton genera respond to the presence of Pseudo-nitzschia. Here, we used a 4-year high-resolution imaging dataset for 9 commonly found phytoplankton genera in Narragansett Bay, alongside environmental data, to identify potential interactions between phytoplankton genera and their response to elevated Pseudo-nitzschia abundance. Our results indicate that Pseudo-nitzschia tends to bloom either concurrently with or right after other phytoplankton genera. Such bloom periods coincide with higher water temperatures and lower salinity. Pseudo-nitzschia image abundance tends to increase the most from March-May and peaks during May-Jun, whereas the image-derived biovolume and width of Pseudo-nitzschia chains increase the most during Jan-Feb. For most phytoplankton genera, their relationship with Pseudo-nitzschia abundance is noticeably different from their relationship with Pseudo-nitzschia image features. Despite the complexity in the phytoplankton community, our analysis suggests several ecological indicators that may be used to determine the risk of harmful algal blooms. [ABSTRACT FROM AUTHOR]

In 2016-17, shellfish harvesting closed for the first time in Narragansett Bay, Rhode Island, USA, from domoic acid (DA), a neurotoxin produced by diatoms of the Pseudo-nitzschia genus. Pseudo-nitzschia have occurred frequently for over 60 years in Narragansett Bay’s Long-Term Plankton Time Series (NBPTS), therefore it is surprising that the first closure only recently occurred. Pseudo-nitzschia species are known to vary in their toxin production, thus species identification is critical for understanding the underlying ecological causes of these harmful algal blooms (HABs). DNA in plankton biomass can be preserved for many years, so molecular barcoding of archived samples is useful for delineation of taxa over time. This study used amplification of the Pseudo-nitzschia-specific 18S-5.8S rDNA internal transcribed spacer region 1 (ITS1) in plankton samples and high throughput sequencing to characterize Pseudo-nitzschia species composition over a decade in Narragansett Bay, including eight years before the 2016-17 closures and two years following. This metabarcoding method can discriminate nearly all known Pseudo-nitzschia species. Several species recur as year-round residents in Narragansett Bay (P. pungens var. pungens, P. americana, P. multiseries, and P. calliantha). Various other species increased in frequency after 2015, and some appeared for the first time during the closure period. Notably, P. australis, a species prevalent in US West Coast HABs and known for high DA production, was not observed in Narragansett Bay until the 2017 closure but has been present in several years after the closures. Annual differences in Pseudo-nitzschia composition were correlated with physical and chemical conditions, predominantly water temperature. The long-term composition trends of Pseudo-nitzschia in Narragansett Bay serve as a baseline for identifying the introduction of new species, understanding shifting assemblages that contributed to the 2016-17 closures, and monitoring species that may be cause for future concern.

Many urban estuaries worldwide suffer from excess phytoplankton and hypoxia (low oxygen) due to high nutrient loads. A common water quality management strategy is to require wastewater treatment facility upgrades. This case study examines Narragansett Bay, a warming temperate mid-latitude urban estuary with seasonal periodic hypoxia, during June through September from 2005 to 2019. Within this period, numerous facilities were upgraded to nitrogen removal over several years. The response of the bay is more consistent with “textbook” expectations for reduced chlorophyll and hypoxia than what was seen in many other systems—despite its complex coastline geometry, numerous river inputs, and widely-distributed treatment facilities. River flow drives inter-annual variability with increased load, density stratification, chlorophyll, and hypoxia in wet years. Mean 2013-2019 bay-wide total nitrogen load was 34% less than the 2005-2012 mean, a reduction of about 106 kg yr-1, comparable to the range of flow-driven inter-annual variations. Chlorophyll Index and Hypoxia Index event-based metrics applied to high-frequency time series observations at eight sites quantify exceedances of severe and moderate thresholds. Relatively steady 33% and 16% Chlorophyll Index declines, for severe and moderate thresholds, occurred from about 2007 to 2019. The Hypoxia Index declined markedly by 2009 and 2014 for severe and moderate thresholds, respectively, and remained at or near zero from 2014 to 2019. The load reduction explains chlorophyll and hypoxia declines better than physical processes including river flow, stratification, tidal variations, winds, sea level differences, and temperatures. River flow about 55% higher than the 2005-2019 mean would increase non-treatment facility loads by an amount comparable to the managed load decrease, so future wet summers could partially reverse the improvements. Long-term trends include warming of about 0.5°C decade-1, which reduces oxygen saturation by 0.1 mg l-1 decade-1. This rate is likely a lower bound for temperature-driven oxygen decreases, because warming can also accelerate phytoplankton growth and bacterial consumption. Without warming, the managed load decrease would have curtailed hypoxia more effectively. Climate trends should be at least as important to future eutrophication as the managed load decline because, in addition to warming influences, long-term increases in river flow would increase load and stratification.

This work utilizes remotely sensed thermal data to understand how the release of thermal pollution from the Brayton Point Power Station (BPPS) affected the temperature behavior of Narragansett Bay. Building upon previous work with Landsat 5, a multi-satellite analysis is conducted that incorporates 582 scenes from Landsat 5, Landsat 7, and Landsat 8 over 1984–2021 to explain seasonal variability in effluent impacts, contrast data after the effluent ceased in 2011, identify patterns in temperature before and after effluent ceased using unsupervised learning, and track how recent warming trends compare to the BPPS impact. Stopping the thermal effluent corresponds to an immediate cooling of 0.26 ± 0.1°C in the surface temperature of Mt. Hope Bay with respect to the rest of Narragansett Bay with greater cooling of 0.62 ± 0.2°C found near Brayton Point; though, cooling since the period of maximal impact (1993–2000) totals 0.53 ± 0.2°C in Mt. Hope Bay and 1.04 ± 0.2°C at Brayton Point. During seasons with lower solar radiation (winter) and lower mean river input (autumn and late summer), the BPPS effluent impact is more prominent. The seasonal differences between the high impact and low impact periods indicate that river input played an important role in the heat balance when emissions were lower, but surface fluxes dominated when emissions were higher. Putting the BPPS effluent in context, Landsat data indicates that Narragansett Bay warmed 0.5–1.2°C over the period of measurement at an average rate of 0.23 ± 0.1°C/decade and that net warming in Mt. Hope Bay is near zero. This trend implies that Narragansett Bay has experienced climatic warming over the past four decades on the scale of the temperature anomaly in Mt. Hope Bay caused by the BBPS effluent.

• Margalefidinium polykrikoides found in Narragansett Bay with an Imaging Flowcytobot. • Importance of hourly water sampling versus weekly sampling. • Environmental conditions impact Margalefidinium polykrikoides bloom proliferation. In August 2018, the harmful algae species Margalefidinium polykrikoides bloomed to levels previously unobserved in the open waters of Narragansett Bay, Rhode Island, in a transient but intense bloom. Detected by an Imaging FlowCytobot providing hourly data, it is characterized by a time span of less than a week and patchiness with sub-daily oscillations in concentration. The highest concentrations are recorded at lower salinity and higher temperature, suggesting the bloom may have developed in the upper bay and was transported south. The proportion of chains increased during the height of the bloom, and many of the images contained 4-cells per chain. The development of the bloom was favored by optimal temperature and salinity conditions as well as increased nitrogen coincident with greater precipitation and river flow. The period preceding bloom formation also saw a sharp decrease in the dominating large chain-forming diatom Eucampia sp. and highly abundant Skeletonema spp., thus reducing competition over resources for the slow-growing M. polykrikoides. The height of the bloom was reached during the lowest tidal range of the month when the turbulence and water displacement were lower. This time series highlights an out-of-the-ordinary bloom's environmental and biological conditions and the importance of frequent sampling during known favorable conditions. [Display omitted] [ABSTRACT FROM AUTHOR]

The abundance of dominant zooplankton, the copepods Acartia hudsonica and Acartia tonsa, was observed for 19 years (1972–1990) as part of a long-term weekly monitoring program in a north temperate estuary, lower Narragansett Bay, Rhode Island, USA. Acartia abundance data were analyzed via time series and phenology analyses to detect changes in abundance and timing (phenology) of the seasonal appearance, disappearance and duration of the cryophilic (A. hudsonica) and thermophilic (A. tonsa) Acartia congeners. No long-term changes in A. hudsonica abundance (long-term mean abundance of 9244 animals m−3) or phenology were detected during 1972–1990. However, de-seasonalized mean A. tonsa abundance increased 2-fold from near 2500 animals m−3 in the early 1970s to near 5000 animals m−3 in the late 1980s. Acartia tonsa also displayed changes in the timing of its annual appearance and departure as observed at the lower Narragansett Bay monitoring station. During 1972–1990, the time of A. tonsa first appearance in the spring advanced by ~3 weeks moving from Week 25 (mid-June) in the early 1970s to Week 22 (mid-May) in the late 1980s. Additionally, A. tonsa tended to depart from the plankton later in the year in the late 1980s (departure in late February) compared to the departure time observed in the 1970s (mid-January). Together, these changes resulted in an increased duration of A. tonsa presence in the water column, with A. tonsa duration increasing from 31 weeks in the early 1970s to 38 weeks in the late 1980s. These changes in thermophilic A. tonsa abundance and phenology appear to have been initial, stimulatory responses to warming that were subsequently modified by changes in the phenology and abundance of gelatinous zooplankton predators. [ABSTRACT FROM AUTHOR]

Benthic invertebrates support numerous ecosystem functions and services including shellfish production, energy flow to fishes, and biogeochemical cycles. The decline of marine biodiversity worldwide has raised concerns about effects on ecosystems. To examine biodiversity trends of Narragansett Bay over time, a list was compiled of all benthic invertebrate species collected from the bay since 1834. The list covers 104 studies spanning 182 years and currently holds 1214 unique taxa from 21 phyla, the majority of all animal phyla on Earth. A permuted estimator of number of species suggested there are about 300 more yet to be discovered. Widely varying sampling gear and sieve mesh sizes precluded the use of abundance data. Instead, multidimensional scaling and taxonomic distinctness were used with presence-absence data to examine biodiversity trends. The changes in community composition and decline of benthic biodiversity (p < 0.01) since 1855 are what would be expected of a community that gradually deteriorated in the face of increasing anthropogenic stressors. Taxonomic distinctness had negative correlations (p < 0.05) with human population in the watershed, total nitrogen inputs, and inputs of metals. This loss of benthic biodiversity has implications for ecosystem functions and services. As some of the stressors waned in the last two or three decades, following passage of environmental legislation in the 1970s, biodiversity appeared to show a partial recovery. An inventory of species, how it has changed over time, and understanding what caused those changes are important for assessing whether remediation programs are achieving improved water quality and ecosystem health. [ABSTRACT FROM AUTHOR]

Pollution has led to a decline of benthic invertebrate biodiversity of Narragansett Bay, raising questions about effects on ecosystem functions and services including shellfish production, energy flow to fishes, and biogeochemical cycles. Changes in community composition and taxonomic distinctness (biodiversity) were calculated from the 1950s—when quantitative benthic invertebrate data first became available—to 2015. Change in community composition of the bay was correlated with changes in dissolved inorganic nitrogen, dissolved oxygen, and sediment contaminants. A mid-bay reference site showed moderate changes in community composition but no change in biodiversity. In contrast, a more impacted site in the upper bay showed substantial differences in community composition over time and a decline in taxonomic distinctness. Bay-wide, as inputs of some stressors such as nutrients and sediment contaminants have declined, there are signs of recovery of benthic biodiversity but other stressors such as temperature and watershed development are increasing. [ABSTRACT FROM AUTHOR]

The tight coupling between nitrogen and carbon cycling has important implications for global climate. These two cycles are under growing anthropogenic pressures (e.g., warming temperatures, changes in nitrogen loading). In this article, we use Narragansett Bay as a model system to explore how large- and small-scale human forcings alter marine sediment nitrogen cycling. We measured net sediment N2 fluxes at two stations in Narragansett Bay over a nine-year period (2005–2013), resulting in observed mean net denitrification rates of 85 µmol m–2 h–1 and 40 µmol m–2 h–1 at the highly impacted and the less impacted sites, respectively. However, mean net N-fixation was essentially the same at each site (–89 and –88 µmol m–2 h–1). We found significant relationships between mean summer (June, July, August) water column chlorophyll and mean summer sediment N2 fluxes. Using these relationships and the long-term chlorophyll record in Narragansett Bay, we predicted summer net sediment N2 fluxes for the last 40 years. This approach suggests that the coastal ocean nitrogen cycle responds rapidly to changes in organic matter availability. If such trends hold true for the global ocean, the marine nitrogen cycle as a whole may also be undergoing significant changes.

In Narragansett Bay, light attenuation by total suspended sediments (TSS), colored dissolved organic matter (CDOM), and phytoplankton chlorophyll-a (chl-a) pigment is 129, 97, and 70%, respectively, of that by pure seawater. Spatial distribution of light attenuation indicates higher values in the upper Bay, where rivers with sediment and nutrient-rich waters enter and elevate TSS, CDOM, and chl-a concentrations. The temporal trends of light attenuation during the summer months (July-August) differed at various locations in the Bay, having the highest values in July. For the same period, spectral methods overestimated attenuation throughout the Bay. These findings quantify the behavior of light attenuation in space and time, providing information that can guide decisions related to improving water clarity and help understanding the effects of various environmental and management scenarios on it. [ABSTRACT FROM AUTHOR]

Sea level rise is a major stressor on many salt marshes, and its impacts include creek widening, ponding, vegetation dieback, and drowning. Marsh vegetation changes have been associated with sea level rise across southern New England, but most of these studies pre-date the current period of rapidly accelerating sea level rise coupled with episodic events of extreme increases in water levels. Here, we combine data from two salt marsh monitoring and assessment programs in Rhode Island that were designed to assess marsh responses to sea level rise and use these data to document temporal and spatial patterns in marsh vegetation during the current period of extreme water level increases. Vegetation monitoring at two Narragansett Bay salt marshes confirms the ongoing decline of the salt meadow species Spartina patens during this period as it becomes replaced by Spartina alterniflora. Bare ground resulting from vegetation dieback was significantly related to mean high water levels and led to the rapid conversion of mixed Spartina assemblages to S. alterniflora monocultures. A broader spatial assessment of RI marshes shows that S. alterniflora dominance increases at lower elevation marshes toward the mouth of Narraganset Bay. Our data provide additional evidence that S. patens continues to decline in southern New England marshes and show that losses can accelerate during periods of extreme high water levels. Unless adaptive management actions are taken, we predict that marshes throughout RI will continue to lose salt meadow habitat and eventually resemble lower elevation marshes that are already dominated by S. alterniflora monocultures. [ABSTRACT FROM AUTHOR]

Excessive input of nitrogen to estuaries and coastal waters leads to eutrophication; the resulting organic matter over-enrichment of sediments and seasonal hypoxia of bottom water have significant deleterious effects on benthic community biodiversity, abundance, and biomass. Our goal was to better understand how these losses carry through to impairment of key ecosystem functions of benthic communities. Recent management efforts to address eutrophication have reduced nitrogen loading to several estuaries of the Virginian Biogeographic Province (northeast United States). How the ecosystems will respond remains to be seen. Using Narragansett Bay as an example estuary within this Province, we compared measures of community structure and function from stations in seasonally hypoxic areas with stations in normoxic areas. We analyzed a benthic data set spanning 20 years (1990-2010) and 155 stations, along with ancillary data from other sources. Hypoxic areas had half the species richness, many fewer rare species, and lower biomass. Benthic communities in the hypoxic areas had a significantly different abundance structure, were at an earlier successional stage, and bioturbated the sediments to a depth about one-fifth that of the normoxic areas. On average, sediments in the hypoxic areas took up more oxygen—used for aerobic metabolism and oxidation of reduced compounds from anaerobic metabolism—than those in normoxic areas. Sediments released into the overlying water two to three times more ammonium and phosphate. Mean flux of dissolved oxygen into the sediments of hypoxic areas and mean net flux of nitrogen gas (from sediment denitrification) out were slightly higher. Eutrophication-driven over-enrichment of organic matter, along with seasonal hypoxia in the northern part of the Bay have led to degradation of benthic community structure and function, which have serious implications for sustainable provision of ecosystem services. We quantified fifteen stressor-response relationships that can help understand how, following a reduction in nitrogen inputs, a recovery of benthic ecosystem functions in hypoxic areas could proceed.

In 2004, the Atlantic Ecology Division of the US Environmental Protection Agency’s Office of Research and Development began an annual winter waterfowl survey of Rhode Island’s Narragansett Bay. Herein, we explore the survey data gathered from 2004 to 2011 in order to establish a benchmark understanding of our waterfowl communities and to establish a statistical framework for future environmental monitoring. The abundance and diversity of wintering waterfowl were relatively stable during the initial years of this survey, except in 2010 when there was a large spike in abundance and a reciprocal fall in diversity. There was no significant change in ranked abundance of most waterfowl species, with only Bufflehead ( Bucephala albeola) and Hooded Merganser ( Lophodytes cucllatus) showing a slight yet significant upward trend during the course of our survey period. Nonmetric multidimensional scaling (NMDS) was used to examine the community structure of wintering waterfowl. The results of the NMDS indicate that there is a spatial structure to the waterfowl communities of Narragansett Bay and this structure has remained relatively stable since the survey began. Our NMDS analysis helps to solidify what is known anecdotally about the bay’s waterfowl ecology, and provides a formalized benchmark for long-term monitoring of Narragansett Bay’s waterfowl communities. Birds, including waterfowl, are preferred bioindicators and we propose using our multivariate approach to monitor the future health of the bay. While this research focuses on a specific area of New England, these methods can be easily applied to novel areas of concern and provide a straightforward nonparametric approach to community-level monitoring. The methods provide a statistic test to examine potential drivers of community turnover and well-suited visualization tools.

• The abundance-based univariate predictability of Pseudo-nitzschia spp. and Dinophysis spp. in Narragansett Bay, Rhode Island, is low across sub-monthly timescales. • To make predictions for timescales less than 7 days, models can rely on the autocorrelation within each time series. • Multivariate models that use image descriptors from an Imaging FlowCytobot significantly increase the predictability of both taxa, especially after 7 days. • Pseudo-nitzschia spp. is most predictable on timescales of 16 and 25 days, whereas Dinophysis spp. is most predictable on timescales of 25 days. • Both Pseudo-nitzschia spp. and Dinophysis spp. are consistently affected by multiple environmental drivers such as wind speed, water temperature, salinity, pH, tide height, and total chlorophyll. Harmful algal blooms (HABs) are an increasing threat to global fisheries and human health. The mitigation of HABs requires management strategies to successfully forecast the abundance and distribution of harmful algal taxa. In this study, we attempt to characterize the dynamics of 2 phytoplankton genera (Pseudo-nitzschia spp. and Dinophysis spp.) in Narragansett Bay, Rhode Island, using empirical dynamic modeling. We utilize a high-resolution Imaging FlowCytobot dataset to generate a daily-resolution time series of phytoplankton images and then characterize the sub-monthly (1–30 days) timescales of univariate and multivariate prediction skill for each taxon. Our results suggest that univariate predictability is low overall, different for each taxon and does not significantly vary over sub-monthly timescales. For all univariate predictions, models can rely on the inherent autocorrelation within each time series. When we incorporated multivariate data based on quantifiable image features, we found that predictability increased for both taxa and that this increase was apparent on timescales >7 days. Pseudo-nitzschia spp. has distinctive predictive dynamics that occur on timescales of around 16 and 25 days. Similarly, Dinophysis spp. is most predictable on timescales of 25 days. The timescales of prediction for Pseudo-nitzschia spp. and Dinophysis spp. could be tied to environmental drivers such as tidal cycles, water temperature, wind speed, community biomass, salinity, and pH in Narragansett Bay. For most drivers, there were consistent effects between the environmental variables and the phytoplankton taxon. Our analysis displays the potential of utilizing data from automated cell imagers to forecast and monitor harmful algal blooms. [ABSTRACT FROM AUTHOR]

The first bay-wide synoptic survey of benthic habitat quality in Narragansett Bay, Rhode Island, USA, was conducted in August of 1988. Twenty years later, we revisited the same sampling locations as the original survey using similar sediment profile imagery technology and analysis tools. Like estuaries throughout the US, increased temperatures and reductions to anthropogenic nutrient inputs have cumulatively affected Narragansett Bay in the intervening 20 years. To understand how these changes may have influenced benthic organic enrichment and habitat quality, we compared the prevalence and spatial arrangement of benthic biotopes (i.e., biotic and abiotic benthic descriptions) between 1988 and 2008 surveys. Biotopes dominated by Ampelisca spp. tubiculous amphipods increased >fivefold between 1988 and 2008, and expanded into the more urban, anthropogenically stressed Providence River estuary. Ampelisca beds occurred at critical boundaries in organic enrichment and habitat quality in both years and indicated the quantity of organic matter reaching the benthos. In general, benthic biotopes reflect the degree of benthic-pelagic coupling and are an important link between estuarine water quality and other marine life. As estuaries globally cope with the effects of increased warming and legislated anthropogenic nutrient reductions, rapid assessments of benthic biotopes will be critical for understanding changes to whole-estuary condition as a result of these cumulative stressors. [ABSTRACT FROM AUTHOR]

Dramatic changes occurred in Narragansett Bay during the 1980s: water clarity increased, while phytoplankton abundance and chlorophyll concentration decreased. We examine how changes in total suspended solids (TSS) loading from wastewater treatment plants may have influenced this decline in phytoplankton chlorophyll. TSS loading, light and phytoplankton observations were compiled and a light- and temperature-dependent Skeletonema -based phytoplankton growth model was applied to evaluate chlorophyll supported by TSS nitrogen during 1983–1995. TSS loading declined 75% from ~ 0.60 × 10 6 kg month − 1 to ~ 0.15 × 10 6 kg month − 1 during 1983–1995. Model results indicate that nitrogen reduction related to TSS reduction was minor and explained a small fraction (~ 15%) of the long-term chlorophyll decline. The decline in NBay TSS loading appears to have increased water clarity and in situ irradiance and contributed to the long-term chlorophyll decline by inducing a physiological response of a ~ 20% reduction in chlorophyll per cell. [ABSTRACT FROM AUTHOR]

Due to nitrogen load reduction policies, wastewater treatment facilities (WWTFs) have upgraded to tertiary treatment — where denitrification reduces and removes nitrogen. Changes to the stable isotopic composition of nitrate inputs after upgrades or how it transfers to the estuary have not been assessed in Rhode Island. We investigate whether these upgrades impact the isotopic signature of nitrate inputs to Narragansett Bay. Samples from rivers and WWTFs discharging to Narragansett Bay characterize the anthropogenic source nitrate (NO 3 − ) isotopic composition (δ 15 N–NO 3 − and δ 18 O–NO 3 − ) and temporal variability. At one WWTF, tertiary treatment increased effluent nitrate δ 15 N–NO 3 − and δ 18 O–NO 3 − values by ~ 16‰. Riverine values increased by ~ 4‰, likely due to the combination of decreases in N and upgrades. Combined river and WWTF flux-weighted isotopic compositions showed enriched values and an amplitude reduction in monthly variability. When seasonal isotopic means are significantly different from other sources, δ 15 N–NO 3 − may be a useful tracer of inputs. [ABSTRACT FROM AUTHOR]

Niche theory, the oldest, most established community assembly model, predicts that in sympatry, the realized niche will contract due to negative interspecific interactions, but fails to recognize the effects of positive interactions on community assembly. The stress gradient hypothesis predicts that positive interactions expand realized niches in stressful habitats. We tested the predictions of the stress gradient hypothesis in a cobble beach model system across both physical and biological stress gradients. We transplanted seven common littoral species within, adjacent to, and below Spartina alterniflora cordgrass stands in control, cage control, predator exclusion cage, shade, and shaded predator exclusion cage treatments to test the hypothesis that cordgrass expands intertidal organism habitats. On cobble beaches, cordgrass ameliorates physical and predation stresses, expanding the distribution and realized niches of species to habitats in which they cannot live without facilitation, suggesting that niche theory and species distribution models should be amended to accommodate the role of positive interactions in community assembly. [ABSTRACT FROM AUTHOR]

Historically, southern New England has supported one of the most productive American lobster (Homarus americanus) fisheries of the northeast United States. Recently, the region has seen dramatic declines in lobster populations coincident with a trend of increasingly stressful summer warmth and shell disease. We report significant declines in the abundance, distribution, and size composition of juvenile lobsters that have accompanied the warming trend in Narragansett Bay, Rhode Island, since the first comprehensive survey of lobster nurseries conducted there in 1990. We used diver-based visual surveys and suction sampling in 1990, 2011, and 2012, supplemented by post-larval collectors in 2011 and 2012. In 1990, lobster nurseries extended from the outer coast into the mid-sections of the bay, but by 2011 and 2012 they were largely restricted to the outer coast and deeper water at the mouth of the bay. Among five new study sites selected by the lobster fishing industry for the 2011 and 2012 surveys, the deepest site on the outer coast (15–17 m depth) harboured some of the highest lobster densities in the survey. Separate fixed site hydrographic monitoring at 13 locations in the bay by the Rhode Island Division of Fish and Wildlife recorded an approximately 2.0°C increase in summer surface temperatures over the period, with 2012 being the warmest on record. Additional monitoring of bottom temperatures, dissolved oxygen and pH at our sampling sites in 2011 and 2012 indicated conditions falling below physiological optima for lobsters during summer. The invasion of the Asian shore crab, Hemigrapsus sanguineus, since the 1990s may also be contributing to declines of juvenile lobster shallow zones (<5 m) in this region. Because lobster populations appear increasingly restricted to deeper and outer coastal waters of southern New England, further monitoring of settlement and nursery habitat in deep water is warranted. [ABSTRACT FROM AUTHOR]

Recent concerns about declining pH in the surface ocean in response to anthropogenic increases of carbon dioxide (CO) in the atmosphere have raised the question of how this declining baseline of oceanic pH might interact with the much larger diel and seasonal variations of pH in coastal marine ecosystems. Nutrient enrichment, which can amplify both production and respiration, has the potential to reduce or exacerbate the impacts of ocean acidification in coastal waters. Here, we present results from a multi-year experiment in which replicate phytoplankton-based mesocosms with a 5-m deep well-mixed water column (salinity = 27-31) and intact benthic community were exposed to a gradient in daily inorganic nitrogen (N), phosphorous (P), and silica (Si) addition. We show that the response of water column pH to nutrient enrichment was the greatest during the autotrophic winter-spring period, and there was no significant decline in pH across treatments during the heterotrophic summer-fall period. We believe that the differences in response lie in the seasonal cycles of production and respiration, where spring production peaks are large and discrete, and respiration is more temperature-driven but occurs diffusely throughout the year. The observed basification associated with enhanced nutrient inputs may have consequences for phytoplankton community structure, some species of submersed aquatic vegetation, cycling of Si, and perhaps other ecological processes. [ABSTRACT FROM AUTHOR]

Abstract: The recent invasions of the red alga, Gracilaria vermiculophylla, to the Atlantic and Eastern Pacific Oceans have the potential to significantly alter intertidal and subtidal soft sediment communities. In particular, G. vermiculophylla increases habitat complexity and provides a novel hard substrate in an otherwise two dimensional habitat. Following our observations that the native omnivorous mud snail Ilyanassa obsoleta utilizes G. vermiculophylla for egg capsule deposition, our field surveys demonstrated that the in situ abundance of egg capsules on G. vermiculophylla matched abundances on a native alga Ceramium virgatum and were at least 11–50 times greater than on all other co-occurring macrophytes. Additionally, through mesocosm experiments, we showed that I. obsoleta preferentially deposits eggs on the invasive G. vermiculophylla over native substrates. However, despite the thick layer of egg capsules found on G. vermiculophylla, no detrimental effects were seen on thalli growth. In contrast, growth of the native red alga Ceramium virgatum was significantly reduced when egg capsules were present, suggesting G. vermiculophylla can out-compete native macrophytes in areas of I. obsoleta abundance, while facilitating reproduction of the native mud snail. This novel interaction has the potential to significantly alter biological interactions in soft sediment communities through a variety of different mechanisms, including the alteration of trophic cascades via the increase in mud snail abundance. Furthermore, facilitation of the reproductive success of I. obsoleta may lead to increases in the occurrence of cercarial dermatitis, as I. obsoleta is a known intermediate host organism. [Copyright &y& Elsevier]

Highlights: [•] Alexandrium tamarense and Alexandrium fundyense from Narragansett Bay, RI, USA are identified via thecal plate morphology and molecular analysis. [•] A suite of toxins (C1/2, B1 (GTX-5), STX, GTX-2/3. Neo, and GTX-1/4) are identified in both A. tamarense (6.31fmolcell−1 STX equivalent) and A. fundyense (9.56fmolcell−1 STX equivalent) isolated from Narragansett Bay. [•] First report of regular appearance of the A. fundyense/A. tamarense species complex in Narragansett Bay. [Copyright &y& Elsevier]

Macroalgal bloom-forming species occur in coastal systems worldwide. However, due to overlapping morphologies in some taxa, accurate taxonomic assessment and classification of these species can be quite challenging. We investigated the molecular and morphological characteristics of 153 specimens of bloom-forming Ulva located in and around Narragansett Bay, RI, USA. We analyzed sequences of the nuclear internal transcribed spacer 1 region ( ITS1) and the chloroplast-encoded rbcL; based on the ITS1 data, we grouped the specimens into nine operational taxonomic units ( OTUs). Eight of these OTUs have been previously reported to exist, while one is novel. Of the eight OTUs, all shared sequence identity with previously published sequences or differed by less than 1.5% sequence divergence for two molecular markers. Previously, 10 species names were reported for Ulva in Rhode Island (one blade and nine tube-forming species) based upon morphological classification alone. Of our nine OTUs, three contained blade-forming specimens ( U. lactuca, U. compressa, U. rigida), one OTU had a blade with a tubular stipe, and six contained unbranched and/or branched tubular morphologies (one of these six, U. compressa, had both a blade and a tube morphology). While the three blade-forming OTUs in Narragansett Bay can frequently be distinguished by careful observations of morphological characteristics, and spatial/temporal distribution, it is much more difficult to distinguish among the tube-forming specimens based upon morphology or distribution alone. Our data support the molecular species concept for Ulva, and indicate that molecular-based classifications of Ulva species are critical for proper species identification, and subsequent ecological assessment or mitigation of Ulva blooms. [ABSTRACT FROM AUTHOR]

Urban marine habitats are often utilized by wildlife for foraging and other activities despite surrounding anthropogenic impact or disturbance. However little is known of the ecological factors that determine habitat value of these and other remnant natural habitats. We examined the preferential use of urban marine habitats in a northeast US estuary to try to elucidate the factors driving enhanced foraging activity at these sites. Using a bioenergetic model, we compared energy intake to energy expenditure and examined differences in behavior and foraging success of great egrets Ardea alba at three urban and three rural salt marshes in Narragansett Bay, Rhode Island USA. Mean per site available nekton energy averaged 4.44 ± 0.97 GJ site and was significantly higher at urban than at rural sites. While energy expenditure by birds was similar across all sites, mean strike and prey capture rate were significantly greater at urban sites, and 70.1 ± 12.2 % of strikes by egrets at urban sites were successful. Egrets foraging at urban sites consumed significantly more energy (23.2 ± 6.62 W bird) than those at rural sites. Model results indicated a net energy gain by egrets foraging at urban sites, versus a net energy loss at rural sites. Our results may help explain previously observed increases in the numbers of egrets foraging at urban marine habitats, and help provide input into decisions about the extent to which these areas should be considered for restoration or protection. [ABSTRACT FROM AUTHOR]

The article discusses a study on the densities of wintering scoters relative to benthic prey assemblage in Narragansett Bay, Rhode Island, an urbanized North Atlantic estuary. The study involves sea duck surveys during the winter of 2010 to 2011. It showed that lower densities of scoters were related to mixed-sand-gravel-mud substrates that supported patchily distributed infauna and epifaunal assemblages.

Over the past three decades, Narragansett Bay has undergone various ecological changes, including significant decreases in water column chlorophyll a concentrations, benthic oxygen uptake, and benthic nutrient regeneration rates. To add to this portrait of change, we measured the net flux of N across the sediment-water interface over an annual cycle using the N/Ar technique at seven sites in the bay for comparison with measurements made decades ago. Net denitrification rates ranged from about 10-90 μmol N-N m h over the year. Denitrification rates were not significantly different among sites and had no clear correlation with temperature. Net nitrogen fixation (−5 to −650 μmol N-N m h) was measured at three sites and only observed in summer (June-August). Neither denitrification nor nitrogen fixation exhibited a consistent relationship with sediment oxygen demand or with fluxes of nitrite, nitrate, ammonium, total dissolved inorganic nitrogen, or dissolved inorganic phosphate across all stations. In contrast to the mid-bay historical site where denitrification rates have declined, denitrification rates in the Providence River Estuary have not changed significantly over the past 30 years. [ABSTRACT FROM AUTHOR]

Abstract: Phytoplankton monitoring in Wickford Cove, Rhode Island, US (41°34′10.13″N, 71°26′45.76″W), located in Narragansett Bay, detected an unusual species of Alexandrium in the spring of 2009. Thecal plate analysis using brightfield and SEM microscopy revealed a plate morphology consistent with that of Alexandrium peruvianum (Balech and de Mendiola) Balech and Tangen. Molecular analyses indicated that the sequences of the SSU, ITS1, 5.8S, ITS2 and LSU through the D region of the 18S gene were similar to those of A. peruvianum from North Carolina. Toxin analyses of cells brought into culture revealed saxitoxins, gymnodimine and fast-acting spiroimines were present in the cultured clone. Saxitoxins detected included GTX 2, GTX3, B1, STX, C1 and C2. Also present in the Wickford cove isolates of A. peruvianum were 12-methyl gymnodimine and 13-desmethyl spirolide C. A. peruvianum was detected at four sites in lower Narragansett Bay: at two sites in Wickford and two sites in Jamestown, RI. A. peruvianum was observed in the spring of 2009, 2010, 2011 and 2012 at maximum abundance levels ranging from tens of cells per liter to 14,000cells L−1. The discovery of A. peruvianum in Rhode Island coastal waters, with its potential threat to public health, is notable as it appears to be an emergent bloom species globally. The presence of A. peruvianum in Narragansett Bay is the third confirmed observation of this species on the Atlantic coast of North America. Monitoring efforts in the southern New England region should incorporate measures to detect the presence of A. peruvianum toxins. [Copyright &y& Elsevier]

Because the rise of cities in North America was much later than in many other parts of the world, their connections to the hinterland were influenced early in their development by railroads and steam-powered water transport. These fossil fuel-based links made it possible to widely separate the 'upstream' autotrophic supporting systems from the heterotrophic cities. Here, we take a different look at the connection between a city (Providence, RI, USA) and its supporting natural systems by focusing on the export of industrial and metabolic wastes from the city to the 'downstream' coastal ecosystem in Narragansett Bay. In this way, we can track the history of a city by examining the concentrations of nutrients, metals, and hydrocarbons in the water and sediments of the estuary. In the greater Providence metropolitan area at the head of Narragansett Bay, there was rapid population and industrial expansion during the 1800s without the proper infrastructure to deal with water supply for public safety and health. On the other hand, the absence of a public water supply kept industrial and metabolic wastes largely on land. However, from the fall of 1871, on with the construction of a public water supply and sewer system, human wastes began flowing into the estuary. By reconstructing the historical record of metals and other pollutants, we illustrate clear temporal and spatial gradients of urban impact on the bay. Unfortunately, while numerous studies during the 1970s and 1980s focused on documenting metal and hydrocarbon pollution in the bay, there has been little effort to quantify the impact of mitigation efforts that have greatly reduced the input of metals and hydrocarbons to the system. Nutrient reductions are more recent and ongoing. [ABSTRACT FROM AUTHOR]

A photosynthetic quotient (PQ) for Narragansett Bay, RI, USA was calculated using concurrent 14C and oxygen light–dark bottle primary production estimations. The current PQ (1.42 ± 0.09) was elevated over the PQ (1.24) calculated in a 1980's mesocosm experiment, stimulating a sensitivity analysis of physiological drivers of the PQ. We speculate that the factor that altered the PQ between surveys was wastewater treatment facility upgrades increasing NO3− effluent proportion from 10 to 40%. [ABSTRACT FROM AUTHOR]

A calibration study between two laboratories tracked the flow of sewage and pollutants in Narragansett Bay by using linear alkylbenzenes as markers.

Abstract: In many coastal marine ecosystems, microphytobenthos (MPB) can contribute a significant fraction of total system primary production, particularly in shallow lagoons or systems with broad photic shoals. While the role of MPB has been quantified in several shallow systems around the world, their contribution to primary production on the extensive shoals that line a number of deeper estuaries has often been overlooked. We assessed the contribution of MPB to total primary production within four regions of upper Narragansett Bay, RI, USA to quantify the significance of benthic production on the extensive shallow shoals that line this relatively deep estuarine system. Our results indicate that surface sediment chlorophyll-a concentrations and daily benthic gross primary production rates in shallow portions of upper Narragansett Bay are within the range of previous studies conducted along the northeastern U.S. coast. Despite these high rates, our results when scaled to the system level emphasize the importance of phytoplankton production in most of the upper bay under current conditions, although MPB were found to contribute a significant fraction (up to one third) of total primary production in certain regions at certain times. Despite the high rates of benthic gross primary production in some portions of the upper bay, the benthos remained net heterotrophic throughout the spring, summer, and fall at most sites, although production within the Greenwich Bay sub-estuary was enough to drive the benthos slightly net autotrophic for short periods in the fall. While the current role of MPB appears to be limited in terms of its overall contribution to total gross primary production, the importance of MPB in the future may increase due to changing climate and reductions in anthropogenic nutrient loading. [Copyright &y& Elsevier]

Ocean acidification is predicted to impact the nitrogen cycle in a variety of ways. Specifically, manipulations of water column pH have shown that nitrification, the microbial conversion of ammonium to nitrate, is inhibited at low pH. A decrease in nitrification may impact phytoplankton composition and production, denitrification, and the production of nitrous oxide. We compiled an existing unique data set of concurrent water column nitrification rates and water column pH values from a temperate New England estuary (Narragansett Bay, RI, USA). Contrary to the current hypothesis, we found that nitrification rates were highest at low pH and significantly ( P = 0.0031) lower at high water column pH. In this study, pH varied up to 0.85 units, 20% more than the maximum predicted ocean pH decrease of 0.7 units. These results highlight that nitrifying organisms in coastal systems tolerate a wide range of pH values. Moreover, the degree of negative correlation with pH may depend on site-specific environmental conditions. Combined, these findings indicate that the current hypothesis of the negative impacts of ocean acidification on nitrification, at least for the coastal ocean, might need reevaluation. [ABSTRACT FROM AUTHOR]

Increasing growth in the aquaculture industry demands ecosystem-based techniques for management if that growth is to be ecologically sustainable and promote equity among users of the ecosystems in which it occurs. Models of carrying capacity can be used to responsibly limit the growth of aquaculture in increasingly crowded coastal areas. Narragansett Bay, Rhode Island, USA is one such crowded coastal region experiencing a rapid increase in bivalve aquaculture. An ecosystem mass-balance model was used to calculate the ecological carrying capacity of bivalve aquaculture. Cultured oyster biomass is currently at 0.47tkm−2 and could be increased 625 times without exceeding the ecological carrying capacity of 297tkm−2. This translates to approximately 38,950t of harvested cultured oysters annually which is 4 times the total estimated annual harvest of finfish. This potential for growth is due to the high primary productivity and large energy throughput to detritus of this ecosystem. Shellfish aquaculture has potential for continued growth and is unlikely to become food limited due, in part, to the large detritus pool. [Copyright &y& Elsevier]

Abstract: When nutrients impact estuarine water quality, scientists and managers instinctively focus on quantifying and controlling land-based sources. However, in Greenwich Bay, RI, the estuary opens onto a larger and more intensively fertilized coastal water body (Narragansett Bay). Previous inventories of nitrogen (N) inputs to Greenwich Bay found that N inputs from Narragansett Bay exceeded those from the local watershed, suggesting that recent efforts to reduce local watershed N loads may have little effect on estuarine water quality. We used stable isotopes of N to characterize watershed and Narragansett Bay N sources as well as the composition of primary producers and consumers throughout Greenwich Bay. Results were consistent with previous assessments of the importance of N inputs to Greenwich Bay from Narragansett Bay. As multiple N sources contribute to estuarine water quality, effective management requires attention to individual sources commensurate with overall magnitude, regardless of the political complications that may entail. [Copyright &y& Elsevier]

Strong benthic-pelagic coupling is an important characteristic of shallow coastal marine ecosystems. Building upon a rich history of benthic metabolism data, we measured oxygen uptake and nutrient fluxes across the sediment-water interface along a gradient of water column primary production in Narragansett Bay, RI (USA). Despite the strong gradients seen in water column production, sediment oxygen demand (SOD) and benthic nutrient fluxes did not exhibit a clear spatial pattern. Some of our sites had been studied in the 1970s and 1980s and thus allowed historical comparison. At these sites, we found that SOD and benthic fluxes have not changed uniformly throughout Narragansett Bay. In the uppermost portion of the bay, the Providence River Estuary, we observed a significant decrease in dissolved inorganic phosphorus fluxes which we attribute to management interventions. At another upper bay site, we observed significant declines in SOD and dissolved inorganic nitrogen fluxes which may be linked to climate-induced decreases in water column primary production and shifts in bloom phenology. In the 1970s, benthic nutrient regeneration supplied 50% to over 200% of the N and P needed to support primary production by phytoplankton. Summer nutrient regeneration in the Providence River Estuary and Upper bay now may only supply some 5-30% of the N and 3-20% of the P phytoplankton demand. [ABSTRACT FROM AUTHOR]

The article discusses a study which investigated the δ13 values of filter-feeding hard clams Mercenaria mercenaria from 13 locations in Greenwich Bay, Rhode Island. The values of δ13 of the clams showed a linear gradient of two percent over the four kilometer (km) length of Greenwich Bay. Study authors conclude that their findings suggest that δ13 values may be sensitive to the changes in inorganic carbon in estuarine systems. They add that the δ13 values in Mercenaria mercenaria may depict ecosystem metabolism variation.

Abstract: The Benthic Habitat Quality (BHQ) index was used to assess habitat visible in sediment profile images (SPI) following hypoxia disturbance in a shallow (<10m) estuarine embayment in Rhode Island, USA. We tested for associations between the BHQ, SPI features and water quality over several assessment windows (1, 3, 7, 14, and 28 days prior to imaging) and at multiple dissolved oxygen (DO) thresholds (2.0mgl−1, 2.9mgl−1, and 4.8mgl−1). Using categorical data analysis, we established empirical relationships between hypoxia prevalence and presence/absence of biogenic features visible in SPI. Fecal pellets, tubes, feeding pits, voids, mounds, and BHQ score were good affirmative features, meaning that their presence (or score greater than 5) indicated a high probability of good water quality. However, low sensitivity to hypoxia precluded their usefulness as indicators, and was attributed to rarity in images and to factors acting on time intervals longer than those examined, e.g. long-term organic enrichment or hypoxia. Burrow structures and the apparent redox potential discontinuity (aRPD), or oxidized layer of surface sediment, were good discriminatory features, with high sensitivity and specificity for both hypoxia and normoxia. Both were strong surrogates for water quality over multiple assessment windows and DO thresholds, and had the highest overall predictive values. We conclude that SPI images can be used to widen the spatial extent of water quality monitoring efforts by utilizing the relationships between aRPD, burrows and hypoxia prevalence. [Copyright &y& Elsevier]

Abstract: The Narragansett Bay in Rhode Island is a complex mosaic of human activities and environmental features and while spatial distributions of physical, chemical, and biological elements are well documented in the Bay, there are limited data on spatial distributions of human activities. In this study, human uses of coastal waters in the upper Narragansett Bay are examined using an approach for characterizing and analyzing fine scale spatial and temporal data on human activities. Shipboard transect surveys of active water activities were conducted in the upper Bay on 50 days during the summer months of 2006–2007. The composition and configuration of different vessel types (recreational motor, recreational sail, row boat, commercial fishing, industrial, service, and official) were analyzed, and the impacts of proposed changes in land use policies and wastewater treatment technologies were investigated. Results indicated that recreational boaters comprised almost two-thirds of the upper Bay''s users and used over one-half of the study area. Industrial activity was concentrated near Providence where RI''s main port is located, and there was an active commercial fishery in the southern portion of the study area. Conditions like increasing cloud cover, weekend days, and the July 4th holiday were related to increased recreational use, while the closure of an upper Bay beach to swimming was associated with fewer commercial fishing vessels and more official boats, recreational motor boats, and service vessels. Findings indicated that upper Bay waters near land converted from industrial zones to zones where residential housing or marinas are encouraged are likely to see a change in composition of vessels, with fewer industrial and official boats and more recreational motor boats, row boats, and service vessels. Enhanced wastewater treatment technologies and the resulting improvements in water quality are likely to make more waters in the upper Bay available to shellfish harvesting, spreading out existing fishing grounds and potential pressures on the ecosystem and on other users. By characterizing the spatial and temporal heterogeneity of human uses in the marine environment and analyzing how these uses relate to the complex human and natural systems in which they are embedded, this study and others like it can positively contribute to marine spatial planning and management efforts designed to achieve ecological, economic, and social objectives. [Copyright &y& Elsevier]

Low dissolved oxygen events were characterized in Narragansett Bay (NB), a moderate-size (370 km²) temperate estuary with a complex passage/embayment geometry, using time series from 2001 to 2006 at nine fixed-site monitoring stations. Metrics for event intensity and severity were the, event-mean deficit relative to a threshold (mg O2 1-1) and the deficit-duration (mg O2 1-1) day; product of deficit and duration [day]). Hypoxia (threshold 2.9 mg O2 1-1) typically occurred intermittently from late June through August at most stations, as multiple (two to five per season) events each 2 to 7 days long with deficit-duration 2 to 5 mg O2 1-1 day. Conditions were more severe to the north and west, a pattern attributed to a north-south nutrient/productivity gradient and east-west structure of residual circulation. Spatial patterns for suboxic and severely hypoxic events (thresholds 4.8 and 1.4 mg O2 l-1) were similar. The view that different processes govern event variability in different regions, each influenced by local hydrodynamics, is supported by both weak spatial synchronicity (quantified using overlap of event times at different sites) and multiple linear regressions of biological and physical parameters against event severity. Interannual changes were prominent and season-cumulative hypoxia severity correlated with June-mean river runorf and June-mean stratification. Benthic ecological implications for areas experiencing events include: NB hypoxia classifies as periodic/episodic on a near-annual basis; highest direct mortality risk is to sensitive and moderately sensitive sessile species in the northern West Passage and western Greenwich Bay, with some risk to Upper Bay; direct risk to mobile species may be ameliorated by weak spatial synchronicity; and indirect impacts, including reduced growth rates and shifts in predator-prey balances, are very likely throughout the sampled area due to observed suboxic and hypoxic conditions. [ABSTRACT FROM AUTHOR]

We developed an assessment model to quantify the wildlife habitat value of New England salt marshes based on marsh characteristics and the presence of habitat types that influence habitat use by terrestrial wildlife. Applying the model to 12 salt marshes located in Narragansett Bay, RI resulted in assessment scores that ranged over a factor of 1.5 from lowest to highest. Pre-classifying the results based on marsh size and morphology helped to compare assessment scores between marshes, and demonstrated that even the lower ranking marshes had substantial habitat value. Stepwise multiple regression analysis of assessment scores and model components demonstrated that salt marsh morphology, the degree of anthropogenic modification, and salt marsh vegetative heterogeneity were significant variables and accounted for 91.3% of the variability in component scores. Our results suggest that targeting these components for restoration may lead to improved assessment scores for our study marshes. We also examined the use of lower resolution remote sensing data in the assessment in order to minimize the time and effort required to complete the model. Scores obtained using smaller-scale, lower resolution data were significantly lower than those obtained using larger-scale, higher resolution data ( df = 11; t = 2.2; p < 0.001). The difference was significantly positively correlated with the portion of the assessment score that could be attributed to trees, pools, and pannes and marsh size ( r2 =0.50, F = 4.6, p = 0.04), and could indicate a bias against smaller, more heterogeneous marshes. We conclude that potential differences need to be weighed against the time benefit of using this type of data, bearing in mind the marsh size and the goals of the assessment. Overall, our assessment can provide information to aid in prioritizing marshes for protection and restoration, identify marshes that may harbor significant biodiversity, or help monitor changes in habitat value over time. [ABSTRACT FROM AUTHOR]

Abstract: The timing and magnitude of phytoplankton blooms have changed markedly in Narragansett Bay, RI (USA) over the last half century. The traditional winter–spring bloom has decreased or, in many years, disappeared. Relatively short, often intense, diatom blooms have become common in spring, summer, and fall replacing the summer flagellate blooms of the past. The annual and summer mean abundance (cell counts) and biomass (chl a) of phytoplankton appear to have decreased based on almost 50 years of biweekly monitoring by others at a mid bay station. These changes have been related to warming of the water, especially during winter, and to increased cloudiness. A significant decline in the winter wind speed may also have played a role. The changes in the phenology of the phytoplankton and the oligotrophication of the bay appear to have decreased greatly the quantity and (perhaps) quality of the organic matter being deposited on the bottom of the bay. This decline has resulted in a very much reduced benthic metabolism as reflected in oxygen uptake, nutrient regeneration, and the magnitude and direction of the net flux of N2 gas. Based on many decades of standard weekly trawls carried out by the Graduate School of Oceanography, the winter biomass of bottom feeding epibenthic animals has also declined sharply at the mid bay station. After decades of relatively constant anthropogenic nitrogen loading (and declining phosphorus loading), the fertilization of the bay will soon be reduced during May–October due to implementation of advanced wastewater treatment. This is intended to produce an oligotrophication of the urban Providence River estuary and the Upper Bay. The anticipated decline in the productivity of the upper bay region will probably decrease summer hypoxia in that area. However, it may have unanticipated consequences for secondary production in the mid and lower bay where climate-induced oligotrophication has already much weakened the historically strong benthic–pelagic coupling. [Copyright &y& Elsevier]

Oxygen depletion in estuaries and coastal waters is often associated with reduced biodiversity, coastal dead zones, and the loss of important ecosystem services. However, some species can benefit from low oxygen conditions due to the indirect effects these conditions have on trophic relationships. In Narragansett Bay, Rhode Island, U.S.A., northern quahogs (Mercenaria mercenaria) reach their highest densities in the areas of the Bay most prone to oxygen depletion. One line of evidence suggests that suboxic events (hypoxia and anoxia) can aid quahogs by excluding predators. Here, we analyze data from long-term surveys of water quality and quahog abundances to test whether a hypoxia-induced predation refuge is strong enough to explain quahog population dynamics in Narragansett Bay. We found that quahog cohorts were larger when they had been exposed to low oxygen conditions as juveniles, consistent with the predation refuge hypothesis. However, cohort size was also strongly associated with location and year settled, suggesting that a predation refuge is but one of a suite of factors influencing M. mercenaria populations. • Hypoxia-Induced Predation Refuge for Northern Quahogs (Mercenaria mercenaria (Linnaeus, 1758)) in a North Temperate Estuary. • Northern quahogs reach high densities in low oxygen areas of Narragansett Bay. • Hypoxic events provide quahogs with refugia from epibenthic predators. • Quahog cohort size increases when exposed to hypoxia as juveniles. • As water quality continues to improve, quahogs may experience increased predation. [ABSTRACT FROM AUTHOR]

Abstract: A 38-year time series (January 1959 to May 1997) of weekly observations of abundance of the marine diatom Skeletonema spp. and related plankton habitat parameters in lower Narragansett Bay, Rhode Island was compiled and analyzed. A statistical change point test identified two different abundance regimes characterized by a ca. 45% decline in Skeletonema abundance. In the first 260 months of the time series (January 1959 to August 1980), the mean deseasonalized Skeletonema abundance was 2137 cells ml−1, which declined to 1128 cells ml−1 in the final 201 months (August 1980 to May 1997) of the time series. The decline was greatest during the winter–spring bloom period; Skeletonema abundance in March declined from a mean of ca. 3300 cells ml−1 prior to the change-point to ca. 700 cells ml−1 after the change point. Skeletonema exhibited three types of annual abundance patterns: winter–spring, summer and autumn bloom peaks. A decline in winter–spring Skeletonema abundance was part of a shift away from winter–spring bloom dominated annual cycles in the 1960s to summer bloom dominated annual cycles in the 1990s. Of 25 years suitable for analyses, Skeletonema winter–spring bloom dominated in 12 years, summer blooms dominated in ten years and autumn blooms dominated three years. Winter–spring Skeletonema bloom years tended to be bright, windy, cold, and have lower copepod (Acartia hudsonica) abundance in the first quarter, and were cool and had high A. hudsonica abundance in the fourth quarter. In contrast, during summer and fall Skeletonema bloom years the first quarters were darker, warmer, less windy and accompanied by higher first quarter A. hudsonica abundance. In summer and fall bloom years the fourth quarters were warm and had above-mean river flow and low A. hudsonica abundance. The observed first quarter environmental differences between winter–spring and summer–fall bloom years (i.e., water temperature, wind, light) may be partially regulated by changes in weather induced by large-scale atmospheric circulation patterns. Years in which the North Atlantic Oscillation (NAO) index was relatively low (mean=−1.4) tended to have colder winters, and winter–spring bloom dominated Skeletonema annual cycles; years with high NAO index (>+1.1) featured warmer winters and summer or autumn Skeletonema blooms. [Copyright &y& Elsevier]

Environmental factors, including the supply of organic matter and inorganic nutrient concentrations, are thought to influence rates of two opposing processes in the nitrogen (N) cycle, denitrification and N fixation. Using sediment cores from a temperate estuary we examined the effects of nitrate, phosphate, and ammonium enrichment of the overlying water on the net N2 flux across the sediment–water interface. In addition, we used sediment cores and large marine mesocosms to determine the effect of organic matter amendment. The addition of nitrate (50 μM), ammonium (50 μM), and phosphate (10 μM) to the overlying water had no effect on the net N2 flux. However, high ammonium fluxes (145 μmol m−2 h−1) were observed in the nitrate-amended cores, which is suggestive of dissimilatory nitrate reduction to ammonium. Organic matter enrichment first increased rates of N fixation, but ultimately switched the sediments from being a net source (N fixation dominated) to a net sink (denitrification dominated) of N. We observed a threshold where N fixation took place when organic matter deposition fell below about 0.3 g C m−2 day−1. On the basis of these results and the findings of others, we developed a conceptual model that links net sediment N2 flux with the organic matter production of a system. [ABSTRACT FROM AUTHOR]

Natural stress gradients can reduce predation intensity and increase prey abundances. Whether the harsh conditions of anthropogenic habitat degradation can similarly reduce predation intensity and structure community dynamics remains largely unexplored. Oxygen depletion in coastal, waters (hypoxia) is a form of degradation that has recently emerged as one of the greatest threats to coastal ecosystems worldwide due to increased rates of eutrophication and climate change. I conducted field experiments and surveys to test whether relaxed predation could explain the paradoxically high abundance of clams that have' sustained a fishery in a degraded estuary with chronic hypoxic conditions. Hypoxia reduced predation on all experimental species but enhanced the long-term survivorship of only sufficiently hypoxia-tolerant prey due to periodic extreme conditions. As a consequence, only the harvested quahog clam (Mercenaria inercenaria) thrived in hypoxic areas that were otherwise rendered dead zones with depauperate diversity and low abundances of other species. This suggests that enhanced populations of some key species may be part of a predictable nonlinear community response that sustains ecosystem services and masks overall downward trends of habitat degradation. [ABSTRACT FROM AUTHOR]