35 results on '"Naoto Tsuchiya"'
Search Results
2. A serum microRNA classifier for the diagnosis of sarcomas of various histological subtypes
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Naofumi Asano, Juntaro Matsuzaki, Makiko Ichikawa, Junpei Kawauchi, Satoko Takizawa, Yoshiaki Aoki, Hiromi Sakamoto, Akihiko Yoshida, Eisuke Kobayashi, Yoshikazu Tanzawa, Robert Nakayama, Hideo Morioka, Morio Matsumoto, Masaya Nakamura, Tadashi Kondo, Ken Kato, Naoto Tsuchiya, Akira Kawai, and Takahiro Ochiya
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Science - Abstract
Sarcomas are rare malignant tumours of bone and soft tissue whose diagnosis remain difficult. Here, the authors analyse serum samples from over 1000 patients and using separate discovery, training and validation cohorts, identify and validate a 7-microRNA index that distinguishes malignant sarcomas from benign disease.
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- 2019
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3. A Nucleolar Stress–Specific p53–miR-101 Molecular Circuit Functions as an Intrinsic Tumor-Suppressor NetworkResearch in context
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Yuko Fujiwara, Motonobu Saito, Ana I. Robles, Momoyo Nishida, Fumitaka Takeshita, Masatoshi Watanabe, Takahiro Ochiya, Jun Yokota, Takashi Kohno, Curtis C. Harris, and Naoto Tsuchiya
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Medicine ,Medicine (General) ,R5-920 - Abstract
Background: Activation of intrinsic p53 tumor-suppressor (TS) pathways is an important principle underlying cancer chemotherapy. It is necessary to elucidate the precise regulatory mechanisms of these networks to create new treatment strategies. Methods: Comprehensive analyses were carried out by microarray. Expression of miR-101 was analyzed by clinical samples of lung adenocarcinomas. Findings: We discovered a functional link between p53 and miR-101, which form a molecular circuit in response to nucleolar stress. Inhibition of RNA polymerase I (Pol I) transcription resulted in the post-transcriptional activation of miR-101 in a p53-dependent manner. miR-101 induced G2 phase–specific feedback regulation of p53 through direct repression of its target, EG5, resulting in elevated phosphorylation of ATM. In lung cancer patients, low expression of miR-101 was associated with significantly poorer prognosis exclusively in p53 WT cases. miR-101 sensitized cancer cells to Pol I transcription inhibitors and strongly repressed xenograft growth in mice. Interestingly, the most downstream targets of this circuit included the inhibitor of apoptosis proteins (IAPs). Repression of cIAP1 by a selective inhibitor, birinapant, promoted activation of the apoptosis induced by Pol I transcription inhibitor in p53 WT cancer cells. Interpretation: Our findings indicate that the p53–miR-101 circuit is a component of an intrinsic TS network formed by nucleolar stress, and that mimicking activation of this circuit represents a promising strategy for cancer therapy. Fund: National Institute of Biomedical Innovation, Ministry of Education, Culture, Sports & Technology of Japan, Japan Agency for Medical Research and Development. Keywords: p53, Nucleolar stress, miR-101, Tumor-suppressor network
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- 2018
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4. Inhibition of Peroxisome Proliferator-Activated Receptor γ Promotes Tumorigenesis Through Activation of the β-Catenin / T Cell Factor (TCF) Pathway in the Mouse Intestine
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Toshio Fujisawa, Michiko Sugiyama, Ayako Tomimoto, Koichiro Wada, Hiroki Endo, Hirokazu Takahashi, Kyoko Yoneda, Masato Yoneda, Masahiko Inamori, Satoru Saito, Yasuo Terauchi, Takashi Kadowaki, Naoto Tsuchiya, Hitoshi Nakagama, and Atsushi Nakajima
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Therapeutics. Pharmacology ,RM1-950 - Abstract
Although peroxisome proliferator-activated receptor γ (PPARγ) is strongly expressed in the intestinal epithelium, the role of PPARγ in intestinal tumorigenesis has not yet been elucidated. To address this issue, we investigated the effect of PPARγ inhibition and its mechanism on intestinal tumorigenesis using a selective antagonist, T0070907. We treated ApcMin/+ mice and carcinogen-induced colon cancer model C57BL/6 mice with T0070907 and counted the number of spontaneous polyps and aberrant crypt foci and observed cell proliferation and β-catenin protein in the colon epithelium. To investigate its mechanism, the changes of β-catenin/TCF (T cell factor) transcriptional activity and location of β-catenin induced by T0070907 were investigated in the colon cancer cell lines. T0070907 promoted polyp formation in the small intestine of ApcMin/+ mice and aberrant crypt foci in the colon of C57BL/6 mice. PPARγ inhibition promoted cell proliferation and increased expressions of the c-myc and cyclin D1 genes and the β-catenin protein in the colon epithelium. In vitro, cell proliferation was promoted, but it was inhibited by the transfection of dominant-negative Tcf4. T0070907 increased β-catenin/TCF transcriptional activity and β-catenin protein in the cytsol and nucleus, but relatively decreased it on the cell membrane. PPARγ antagonist promotes tumorigenesis in the small intestine and colon through stimulation of epithelial cell proliferation. β-Catenin contributes to the promotion of tumorigenesis by PPARγ antagonist due to activation of TCF/LEF (lymphoid enhancer factor) transcriptional factor. Keywords:: peroxisome proliferator-activated receptor γ (PPARγ), T0070907, aberrant crypt foci (ACF), β-catenin, intestinal tumor
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- 2008
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5. Circulating exosomal microRNAs as biomarkers of colon cancer.
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Hiroko Ogata-Kawata, Masashi Izumiya, Daisuke Kurioka, Yoshitaka Honma, Yasuhide Yamada, Koh Furuta, Toshiaki Gunji, Hideki Ohta, Hiroyuki Okamoto, Hikaru Sonoda, Masatoshi Watanabe, Hitoshi Nakagama, Jun Yokota, Takashi Kohno, and Naoto Tsuchiya
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Medicine ,Science - Abstract
PURPOSE: Exosomal microRNAs (miRNAs) have been attracting major interest as potential diagnostic biomarkers of cancer. The aim of this study was to characterize the miRNA profiles of serum exosomes and to identify those that are altered in colorectal cancer (CRC). To evaluate their use as diagnostic biomarkers, the relationship between specific exosomal miRNA levels and pathological changes of patients, including disease stage and tumor resection, was examined. EXPERIMENTAL DESIGN: Microarray analyses of miRNAs in exosome-enriched fractions of serum samples from 88 primary CRC patients and 11 healthy controls were performed. The expression levels of miRNAs in the culture medium of five colon cancer cell lines were also compared with those in the culture medium of a normal colon-derived cell line. The expression profiles of miRNAs that were differentially expressed between CRC and control sample sets were verified using 29 paired samples from post-tumor resection patients. The sensitivities of selected miRNAs as biomarkers of CRC were evaluated and compared with those of known tumor markers (CA19-9 and CEA) using a receiver operating characteristic analysis. The expression levels of selected miRNAs were also validated by quantitative real-time RT-PCR analyses of an independent set of 13 CRC patients. RESULTS: The serum exosomal levels of seven miRNAs (let-7a, miR-1229, miR-1246, miR-150, miR-21, miR-223, and miR-23a) were significantly higher in primary CRC patients, even those with early stage disease, than in healthy controls, and were significantly down-regulated after surgical resection of tumors. These miRNAs were also secreted at significantly higher levels by colon cancer cell lines than by a normal colon-derived cell line. The high sensitivities of the seven selected exosomal miRNAs were confirmed by a receiver operating characteristic analysis. CONCLUSION: Exosomal miRNA signatures appear to mirror pathological changes of CRC patients and several miRNAs are promising biomarkers for non-invasive diagnosis of the disease.
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- 2014
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6. Carbon-ion beam irradiation kills X-ray-resistant p53-null cancer cells by inducing mitotic catastrophe.
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Napapat Amornwichet, Takahiro Oike, Atsushi Shibata, Hideaki Ogiwara, Naoto Tsuchiya, Motohiro Yamauchi, Yuka Saitoh, Ryota Sekine, Mayu Isono, Yukari Yoshida, Tatsuya Ohno, Takashi Kohno, and Takashi Nakano
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Medicine ,Science - Abstract
Background and purposeTo understand the mechanisms involved in the strong killing effect of carbon-ion beam irradiation on cancer cells with TP53 tumor suppressor gene deficiencies.Materials and methodsDNA damage responses after carbon-ion beam or X-ray irradiation in isogenic HCT116 colorectal cancer cell lines with and without TP53 (p53+/+ and p53-/-, respectively) were analyzed as follows: cell survival by clonogenic assay, cell death modes by morphologic observation of DAPI-stained nuclei, DNA double-strand breaks (DSBs) by immunostaining of phosphorylated H2AX (γH2AX), and cell cycle by flow cytometry and immunostaining of Ser10-phosphorylated histone H3.ResultsThe p53-/- cells were more resistant than the p53+/+ cells to X-ray irradiation, while the sensitivities of the p53+/+ and p53-/- cells to carbon-ion beam irradiation were comparable. X-ray and carbon-ion beam irradiations predominantly induced apoptosis of the p53+/+ cells but not the p53-/- cells. In the p53-/- cells, carbon-ion beam irradiation, but not X-ray irradiation, markedly induced mitotic catastrophe that was associated with premature mitotic entry with harboring long-retained DSBs at 24 h post-irradiation.ConclusionsEfficient induction of mitotic catastrophe in apoptosis-resistant p53-deficient cells implies a strong cancer cell-killing effect of carbon-ion beam irradiation that is independent of the p53 status, suggesting its biological advantage over X-ray treatment.
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- 2014
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7. Onset of quiescence following p53 mediated down-regulation of H2AX in normal cells.
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Yuko Atsumi, Hiroaki Fujimori, Hirokazu Fukuda, Aki Inase, Keitaro Shinohe, Yoshiko Yoshioka, Mima Shikanai, Yosuke Ichijima, Junya Unno, Shuki Mizutani, Naoto Tsuchiya, Yoshitaka Hippo, Hitoshi Nakagama, Mitsuko Masutani, Hirobumi Teraoka, and Ken-ichi Yoshioka
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Medicine ,Science - Abstract
Normal cells, both in vivo and in vitro, become quiescent after serial cell proliferation. During this process, cells can develop immortality with genomic instability, although the mechanisms by which this is regulated are unclear. Here, we show that a growth-arrested cellular status is produced by the down-regulation of histone H2AX in normal cells. Normal mouse embryonic fibroblast cells preserve an H2AX diminished quiescent status through p53 regulation and stable-diploidy maintenance. However, such quiescence is abrogated under continuous growth stimulation, inducing DNA replication stress. Because DNA replication stress-associated lesions are cryptogenic and capable of mediating chromosome-bridge formation and cytokinesis failure, this results in tetraploidization. Arf/p53 module-mutation is induced during tetraploidization with the resulting H2AX recovery and immortality acquisition. Thus, although cellular homeostasis is preserved under quiescence with stable diploidy, tetraploidization induced under growth stimulation disrupts the homeostasis and triggers immortality acquisition.
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- 2011
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8. Oncofetal IGF2BP3-mediated control of microRNA structural diversity in the malignancy of early-stage lung adenocarcinoma.
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Yuko Fujiwara, Ryou-u Takahashi, Motonobu Saito, Michinobu Umakoshi, Yoko Shimada, Kei Koyama, Yasushi Yatabe, Shun-ichi Watanabe, Souichi Koyota, Yoshihiro Minamiya, Hidetoshi Tahara, Koji Kono, Kouya Shiraishi, Takashi Kohno, Akiteru Goto, and Naoto Tsuchiya
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GENE expression profiling ,BIODIVERSITY ,EPITHELIAL-mesenchymal transition ,CELL cycle ,CELL anatomy - Abstract
The nature of microRNA (miRNA) dysfunction in carcinogenesis remains controversial because of the complex connection between miRNA structural diversity and biological processes. Here, we found that oncofetal IGF2BP3 regulates the selective production of a subset of 3'-isoforms (3'-isomiRs), including miR-21-5p and Let-7 family, which induces significant changes in their cellular seed occupancy and structural components, establishing a cancer-specific gene expression profile. The D-score, reflecting dominant production of a representative miR-21-5p+C (a 3'-isomiR), discriminated between clinical early-stage lung adenocarcinoma (LUAD) cases with low and high recurrence risks, and was associated with molecular features of cell cycle progression, epithelial-mesenchymal transition pressure, and immune evasion. We found that IGF2BP3 controls the production of miR-21-5p+C by directing the nuclear Drosha complex to select the cleavage site. IGF2BP3 was also involved in the production of 3'-isomiRs of miR-425-5p and miR-454-3p. IGF2BP3-regulated these three miRNAs are suggested to be associated with the regulation of p53, TGF-β, and TNF pathways in LUAD. Knockdown of IGF2BP3 also induced a selective upregulation of Let-7 3'-isomiRs, leading to increased cellular Let-7 seed occupancy and broad repression of its target genes encoding cell cycle regulators. The D-score is an index that reflects this cellular situation. Our results suggest that the aberrant regulation of miRNA structural diversity is a critical component for controlling cellular networks, thus supporting the establishment of a malignant gene expression profile in early stage LUAD. [ABSTRACT FROM AUTHOR]
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- 2024
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9. Fluoride-bridged dinuclear dysprosium complex showing single-molecule magnetic behavior : supramolecular approach to isolate magnetic molecules
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Dong-Fang Wu, Kiyonori Takahashi, Masaru Fujibayashi, Naoto Tsuchiya, Goulven Cosquer, Rui-Kang Huang, Chen Xue, Sadafumi Nishihara, and Takayoshi Nakamura
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General Chemical Engineering ,General Chemistry - Abstract
Using Na-encapsulated benzo[18]crown-6 (Na)(B18C6) as a counter cation, we successfully magnetically isolated a fluoride-bridging Dy dinuclear complex {[(PW11O39)Dy(H2O)(2)](2)F} (Dy2POM) with lacunary Keggin ligands. (Na)(B18C6) formed two types of tetramers through C-HMIDLINE HORIZONTAL ELLIPSISO, pi MIDLINE HORIZONTAL ELLIPSIS pi and C-HMIDLINE HORIZONTAL ELLIPSIS pi interactions, and each tetramer aligned in one dimension along the c-axis to form two types of channels. One channel was partially penetrated by a supramolecular cation from the +/- a-axis direction, dividing the channel in the form of a bamboo node. Dy2POM was spatially divided by this bamboo node, which magnetically isolated one portion from the other. The temperature dependence of the magnetic susceptibility indicated a weak ferromagnetic interaction between the Dy ions bridged by fluoride. Dy2POM exhibited the magnetic relaxation characteristics of a single-molecule magnet, including the dependence of AC magnetic susceptibility on temperature and frequency. Magnetic relaxation can be described by the combination of thermally active Orbach and temperature-independent quantum tunneling processes. The application of a static magnetic field effectively suppressed the relaxation due to quantum tunneling.
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- 2022
10. Comprehensive miRNA expression analysis for histological subtypes of soft tissue sarcoma
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Yuki Yoshimatsu, Ryuto Tsuchiya, Naoto Tsuchiya, Seiji Ohtori, Akira Kawai, and Tadashi Kondo
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Pathology ,medicine.medical_specialty ,Mirna expression ,Soft tissue sarcoma ,medicine ,Biology ,medicine.disease - Published
- 2021
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11. A serum microRNA classifier for the diagnosis of sarcomas of various histological subtypes
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Takahiro Ochiya, Hiromi Sakamoto, Ken Kato, Morio Matsumoto, Makiko Ichikawa, Masaya Nakamura, Robert Nakayama, Akihiko Yoshida, Naoto Tsuchiya, Naofumi Asano, Hideo Morioka, Juntaro Matsuzaki, Eisuke Kobayashi, Yoshikazu Tanzawa, Yoshiaki Aoki, Akira Kawai, Satoko Takizawa, Tadashi Kondo, and Junpei Kawauchi
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Adult ,Male ,0301 basic medicine ,Pathology ,medicine.medical_specialty ,Science ,General Physics and Astronomy ,Bone Neoplasms ,Soft Tissue Neoplasms ,02 engineering and technology ,Real-Time Polymerase Chain Reaction ,Sensitivity and Specificity ,Article ,General Biochemistry, Genetics and Molecular Biology ,Diagnosis, Differential ,03 medical and health sciences ,Neoplasms ,microRNA ,Biomarkers, Tumor ,Humans ,Medicine ,In patient ,lcsh:Science ,Serum microrna ,Aged ,Principal Component Analysis ,Multidisciplinary ,Benign disease ,business.industry ,Soft tissue ,Sarcoma ,General Chemistry ,Middle Aged ,021001 nanoscience & nanotechnology ,Serum samples ,medicine.disease ,MicroRNAs ,030104 developmental biology ,Case-Control Studies ,Female ,lcsh:Q ,Serum mirna ,Transcriptome ,0210 nano-technology ,business ,Cell-Free Nucleic Acids - Abstract
Due to their rarity and diversity, sarcomas are difficult to diagnose. Consequently, there is an urgent demand for a novel diagnostic test for these cancers. In this study, we investigated serum miRNA profiles from 1002 patients with bone and soft tissue tumors representing more than 43 histological subtypes, including sarcomas, intermediate tumors, and benign tumors, to determine whether serum miRNA profiles could be used to specifically detect sarcomas. Circulating serum miRNA profiles in sarcoma patients were clearly distinct from those in patients with other types of tumors. Using the serum levels of seven miRNAs, we developed a molecular detector, Index VI, that could distinguish sarcoma patients from benign and healthy controls with remarkably high sensitivity (90%) and specificity (95%), regardless of histological subtype. Index VI provides an approach to the early and precise detection of sarcomas, potentially leading to curative treatment and longer survival., Sarcomas are rare malignant tumours of bone and soft tissue whose diagnosis remain difficult. Here, the authors analyse serum samples from over 1000 patients and using separate discovery, training and validation cohorts, identify and validate a 7-microRNA index that distinguishes malignant sarcomas from benign disease.
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- 2019
12. MO42-3 The stability of angiogenesis-related factors in angiogenesis panel: a prospective observational study
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Toshiharu Hirose, Atsuo Takashima, Hidekazu Hirano, Natsuko Okita, Hirokazu Shoji, Satoru Iwasa, Rie Matsuo, Kimihiko Kawamura, Hiroya Taniguchi, Naoto Tsuchiya, Satoru Otsu, Shuichi Hironaka, Hiromichi Matsushita, and Ken Kato
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Oncology ,Hematology - Published
- 2022
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13. An Integrated Prognostic Classifier for Stage I Lung Adenocarcinoma Based on mRNA, microRNA, and DNA Methylation Biomarkers
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Elise D. Bowman, Hirokazu Okayama, Ana I. Robles, Ewy Mathé, Derek Brown, Judith A. Welsh, Naoto Tsuchiya, Steen Mollerup, Curtis C. Harris, Aage Haugen, Yae Kanai, David Petersen, Rintaro Noro, Paul S. Meltzer, Takashi Kohno, Jun Yokota, Eri Arai, Vidar Skaug, Yonghong Wang, Holly S. Stevenson, Daniel C. Edelman, and Aaron J. Schetter
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Male ,Pulmonary and Respiratory Medicine ,Lung Neoplasms ,Adenocarcinoma of Lung ,Adenocarcinoma ,Article ,Cohort Studies ,microRNA ,Biomarkers, Tumor ,Medicine ,Humans ,RNA, Messenger ,Precision Medicine ,Gene ,Survival analysis ,Epigenomics ,Aged ,Neoplasm Staging ,Oligonucleotide Array Sequence Analysis ,Retrospective Studies ,Aged, 80 and over ,business.industry ,Proportional hazards model ,Promoter ,DNA Methylation ,Middle Aged ,medicine.disease ,Prognosis ,MicroRNAs ,Oncology ,DNA methylation ,Cancer research ,Female ,business - Abstract
Up to 30% stage I lung cancer patients suffer recurrence within 5 years of curative surgery. We sought to improve existing protein-coding gene and microRNA expression prognostic classifiers by incorporating epigenetic biomarkers.Genome-wide screening of DNA methylation and pyrosequencing analysis of HOXA9 promoter methylation were performed in two independently collected cohorts of stage I lung adenocarcinoma. The prognostic value of HOXA9 promoter methylation alone and in combination with mRNA and miRNA biomarkers was assessed by Cox regression and Kaplan-Meier survival analysis in both cohorts.Promoters of genes marked by polycomb in embryonic stem cells were methylated de novo in tumors and identified patients with poor prognosis. The HOXA9 locus was methylated de novo in stage I tumors (p0.0005). High HOXA9 promoter methylation was associated with worse cancer-specific survival (hazard ratio [HR], 2.6; p = 0.02) and recurrence-free survival (HR, 3.0; p = 0.01), and identified high-risk patients in stratified analysis of stages IA and IB. Four protein-coding gene (XPO1, BRCA1, HIF1α, and DLC1), miR-21 expression, and HOXA9 promoter methylation were each independently associated with outcome (HR, 2.8; p = 0.002; HR, 2.3; p = 0.01; and HR, 2.4; p = 0.005, respectively), and when combined, identified high-risk, therapy naive, stage I patients (HR, 10.2; p = 3 × 10). All associations were confirmed in two independently collected cohorts.A prognostic classifier comprising three types of genomic and epigenomic data may help guide the postoperative management of stage I lung cancer patients at high risk of recurrence.
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- 2015
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14. Comprehensive miRNA expression analysis for histological subtypes of soft tissue sarcoma.
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Ryuto Tsuchiya, Yuki Yoshimatsu, Naoto Tsuchiya, Seiji Ohtori, Kawai, Akira, and Tadashi Kondo
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MICRORNA ,SOFT tissue tumors ,NON-coding RNA ,BIOMARKERS ,DERMATOFIBROSARCOMA - Abstract
Sarcoma is a rare mesenchymal malignancy that comprises more than 50 histological subtypes. Because of the rarity and diversity of sarcomas, their differential diagnosis is difficult, and there is still a need for biomarkers to support pathological diagnoses. Micro RNAs (miRNAs) are small noncoding RNAs that regulate the behavior of tumors, such as invasion and metastasis. The expression patterns of miRNAs reflect the origin of malignancy and are considered to be candidate biomarkers. To understand the molecular background of those histological subtypes, we investigated the miRNA expression in 89 tumor tissues of eight subtypes. The correlation coefficients between each sarcoma subtype on the basis of miRNA expression values were mostly higher than 0.7, reflecting the common mesenchymal origin. By contrast, hierarchical clustering and principal component analysis showed that three types of sarcoma with chromosomal translocation (i.e., dermatofibrosarcoma protuberans, myxoid liposarcoma, and synovial sarcoma) were grouped according to their histological subtypes, whereas five types with complex karyotypes (i.e., myxofibrosarcoma, malignant peripheral nerve sheath tumor, undifferentiated pleomorphic sarcoma, dedifferentiated liposarcoma, and pleomorphic liposarcoma) were not. Notably, the number of miRNAs whose expression pattern was unique to histological subtypes with statistical significance was higher in sarcomas with chromosome translocation than in those with complex karyotypes. Hence, it can be concluded that the miRNAs unique to histological subtypes are candidate biomarkers for the differential diagnosis of sarcomas, particularly in those with chromosomal translocation. [ABSTRACT FROM AUTHOR]
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- 2021
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15. Gene expression signature-based prognostic risk score in patients with glioblastoma
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Masakazu Sano, Manabu Natsumeda, Yukihiko Fujii, Hitoshi Takahashi, Ryuya Yamanaka, Naoto Tsuchiya, Tatsuyuki Kakuma, Naoki Yajima, Jumpei Homma, and Atsushi Kawaguchi
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Adult ,Male ,Cancer Research ,Adolescent ,Biology ,Bioinformatics ,Transcriptome ,Young Adult ,Glioma ,medicine ,Humans ,Child ,Grading (tumors) ,Gene ,Survival analysis ,Aged ,Oligonucleotide Array Sequence Analysis ,Aged, 80 and over ,Framingham Risk Score ,Original Articles ,General Medicine ,Middle Aged ,Prognosis ,medicine.disease ,Survival Analysis ,Oncology ,Gene chip analysis ,RNA ,Female ,Human genome ,Glioblastoma - Abstract
The present study aimed to identify genes associated with patient survival to improve our understanding of the underlying biology of gliomas. We investigated whether the expression of genes selected using random survival forests models could be used to define glioma subgroups more objectively than standard pathology. The RNA from 32 non‐treated grade 4 gliomas were analyzed using the GeneChip Human Genome U133 Plus 2.0 Expression array (which contains approximately 47 000 genes). Twenty‐five genes whose expressions were strongly and consistently related to patient survival were identified. The prognosis prediction score of these genes was most significant among several variables and survival analyses. The prognosis prediction score of three genes and age classifiers also revealed a strong prognostic value among grade 4 gliomas. These results were validated in an independent samples set (n = 488). Our method was effective for objectively classifying grade 4 gliomas and was a more accurate prognosis predictor than histological grading.
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- 2013
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16. miR-493 induction during carcinogenesis blocks metastatic settlement of colon cancer cells in liver
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Hiroaki Sakai, Ai Sato, Naoto Tsuchiya, Hirokazu Ohata, Hitoshi Nakagama, Tatsuya Ishiguro, Koji Okamoto, Yutaka Midorikawa, and Masashi Izumiya
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Programmed cell death ,General Immunology and Microbiology ,Colorectal cancer ,General Neuroscience ,Biology ,medicine.disease ,medicine.disease_cause ,General Biochemistry, Genetics and Molecular Biology ,Metastasis ,Downregulation and upregulation ,Cell culture ,microRNA ,Immunology ,medicine ,Cancer research ,Carcinogenesis ,Molecular Biology ,Insulin-like growth factor 1 receptor - Abstract
Liver metastasis is a major lethal complication associated with colon cancer, and post‐intravasation steps of the metastasis are important for its clinical intervention. In order to identify inhibitory microRNAs (miRNAs) for these steps, we performed ‘dropout’ screens of a miRNA library in a mouse model of liver metastasis. Functional analyses showed that miR‐493 and to a lesser extent miR‐493 * were capable of inhibiting liver metastasis. miR‐493 inhibited retention of metastasized cells in liver parenchyma and induced their cell death. IGF1R was identified as a direct target of miR‐493, and its inhibition partially phenocopied the anti‐metastatic effects. High levels of miR‐493 and miR‐493 * , but not pri‐miR‐493, in primary colon cancer were inversely related to the presence of liver metastasis, and attributed to an increase of miR‐493 expression during carcinogenesis. We propose that, in a subset of colon cancer, upregulation of miR‐493 during carcinogenesis prevents liver metastasis via the induction of cell death of metastasized cells.
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- 2012
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17. Systematic exploration of cancer-associated microRNA through functional screening assays
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Naoto Tsuchiya, Koji Okamoto, Masashi Izumiya, and Hitoshi Nakagama
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Cancer Research ,Programmed cell death ,Cell growth ,Gene Expression Profiling ,Cancer ,RNA ,General Medicine ,Computational biology ,Biology ,medicine.disease ,Bioinformatics ,Phenotype ,Gene expression profiling ,Mice ,MicroRNAs ,Oncology ,Cell Movement ,Neoplasms ,microRNA ,medicine ,Animals ,Humans ,Gene ,Cell Proliferation - Abstract
MicroRNA (miRNA), non-coding RNA of approximately 22 nucleotides, post-transcriptionally represses expression of its target genes. miRNA regulates a variety of biological processes such as cell proliferation, cell death, development, stemness and genomic stability, not only in physiological conditions but also in various pathological conditions such as cancers. More than 1000 mature miRNA have been experimentally identified in humans and mice, yet the functions of a vast majority of miRNA remain to be elucidated. Identification of novel cancer-associated miRNA seems promising considering their possible application in the development of novel cancer therapies and biomarkers. Currently, there are two major approaches to identify miRNA that are associated with cancer: expression profiling study and functional screening assay. The former approach is widely used, and a large number of studies have shown aberrant miRNA expression profiles in cancer tissues compared with their non-cancer counterparts. Although aberrantly expressed miRNA are potentially good biomarkers, in most cases a majority of them do not play causal roles in cancers when functional assays are performed. In contrast, the latter approach allows screening of 'driver' miRNA with cancer-associated phenotypes, such as cell proliferation and cell invasion. Thus, this approach might be suitable in finding crucial targets of novel cancer therapy. The combination of both types of approaches will contribute to further elucidation of the cancer pathophysiology and to the development of a novel class of cancer therapies and biomarkers.
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- 2011
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18. Results of Treatment of 112 Cases of Primary CNS Lymphoma
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Ryuya Yamanaka, Tetsuro Tamura, Naoto Tsuchiya, Junpei Homma, Naoki Yajima, Hiroaki Hondoh, Masakazu Sano, Ryuichi Tanaka, Ken Morii, Yoshikatsu Shinbo, Hitoshi Takahashi, and Tatsuyuki Kakuma
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Male ,Oncology ,Cancer Research ,Lymphoma ,medicine.medical_treatment ,Leucovorin ,Kaplan-Meier Estimate ,Procarbazine ,Central Nervous System Neoplasms ,Cognition ,Prednisone ,Antineoplastic Combined Chemotherapy Protocols ,Etoposide ,Aged, 80 and over ,Primary central nervous system lymphoma ,General Medicine ,Middle Aged ,Chemotherapy regimen ,Treatment Outcome ,Chemotherapy, Adjuvant ,Vincristine ,Female ,medicine.drug ,Adult ,medicine.medical_specialty ,Pirarubicin ,Disease-Free Survival ,Internal medicine ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Mechlorethamine ,Karnofsky Performance Status ,Cyclophosphamide ,Aged ,Neoplasm Staging ,Retrospective Studies ,Salvage Therapy ,Chemotherapy ,business.industry ,medicine.disease ,Surgery ,Methotrexate ,Doxorubicin ,Radiotherapy, Adjuvant ,Cranial Irradiation ,business - Abstract
Background: Chemotherapy with or without radiotherapy is the mainstay of treatment for primary central nervous system lymphoma (PCNSL). High-dose methotrexate (MTX) is the most effective drug available to treat these lesions, either as a single agent or in combination with other drugs. Due to the lack of well-conducted randomized trials, the optimal treatment remains controversial. Available retrospective studies are difficult to discuss, however, some common themes can be found. Methods: One hundred and twelve patients with PCNSL were treated with four different regimens over a period of 24 years. Treatment regimens were: whole-brain irradiation (WBI) alone, MVP (MTX, vincristine, and predonisolone), ProMACE-MOPP hybrid (cyclophosphamide, pirarubicin, etoposide, vincristine, procarbazine, prednisone, and MTX) and R-MTX (rituximab, MTX, pirarubicin, procarbazine, and prednisone) combined-modality therapy. Results: The median failure-free survival was 16 months, and the median overall survival (OS) was 24 months. The 2- and 5-year actuarial probability of survival was 52.4+4.8% [95% confidence intervals (CI)] and 30.2+4.8% (95% CI), respectively. The ProMACEMOPP protocol, Karnofsky performance status (KPS), MTX dose and WBI were associated with good OS by univariate models. By multivariate analysis, MTX dose, WBI dose, and its square dose were significantly associated with good OS. 20‐30 Gy WB, and 500 mg/m 2 of MTX dose appeared important determinants of OS. Conclusions: A modest dose of MTX (500 mg/m 2 ) followed by reduced-dose WBI for patients who respond appears a feasible treatment approach that minimizes serious toxicity.
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- 2008
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19. Mouse strain differences in inflammatory responses of colonic mucosa induced by dextran sulfate sodium cause differential susceptibility to PhIP-induced large bowel carcinogenesis
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Hiroshi Tazawa, Naoto Tsuchiya, Masako Nakanishi, Hitoshi Nakagama, Takashi Sugimura, and Takuji Tanaka
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Cancer Research ,Time Factors ,Carcinogenicity Tests ,Colon ,Mice, Inbred Strains ,Inflammation ,Adenocarcinoma ,medicine.disease_cause ,Mice ,Species Specificity ,medicine ,Animals ,Mesenteric lymph nodes ,Large intestine ,Intestinal Mucosa ,Colitis ,Carcinogen ,Mice, Inbred BALB C ,Cocarcinogenesis ,business.industry ,Dextran Sulfate ,Imidazoles ,General Medicine ,medicine.disease ,Cellular infiltration ,Leukemia ,medicine.anatomical_structure ,Oncology ,Colonic Neoplasms ,Immunology ,Carcinogens ,Cancer research ,Disease Susceptibility ,medicine.symptom ,business ,Carcinogenesis - Abstract
In mice, 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine (PhIP) induces a high incidence of malignant lymphoma and leukemia, but exhibits little, if any, carcinogenic activity in the large intestine after long-term exposure. However, recent studies have revealed that colonic adenocarcinomas can be efficiently and rapidly induced by combined treatment with PhIP and dextran sulfate sodium (DSS), a potent inducer of colitis. In the present study, the authors investigated the effects of inflammation on PhIP-induced carcinogenesis using two mouse strains, C57BL/6J and MSM/Ms, showing distinct temporal profiles of inflammatory responses to DSS. A long-term carcinogenesis experiment conducted with a single i.g. administration of PhIP (200 mg/kg body weight), followed by DSS treatment in drinking water for 4-6 days, revealed an increase in tumor incidence in C57BL/6J mice in accordance with the DSS intake. In contrast, neoplastic lesions were rarely observed in the MSM/Ms strain. From the short-term exposure to DSS for 4 days, C57BL/6J mice demonstrated severe chronic colitis, accompanied by hyperplastic cryptal epithelium and extensive cellular infiltration. Splenomegaly and swelling of mesenteric lymph nodes were also evident for over 1 month as chronic symptoms of systemic immunological disturbance. However, no inflammatory lesions were detected in MSM/Ms mice. The present results provide strong evidence that prolonged chronic inflammatory responses induced by DSS are directly responsible for the observed enhancement of PhIP-induced large bowel carcinogenicity.
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- 2007
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20. HnRNP A3 binds to and protects mammalian telomeric repeats in vitro
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Etsuko Tanaka, Hitoshi Nakagama, Katsuhiko Nakashima, Naoto Tsuchiya, Hirokazu Fukuda, and Hiroyuki Seimiya
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Telomerase ,Molecular Sequence Data ,Telomere-Binding Proteins ,Biophysics ,Biology ,Biochemistry ,DNA-binding protein ,law.invention ,chemistry.chemical_compound ,law ,Heterogeneous-Nuclear Ribonucleoprotein Group A-B ,Humans ,Amino Acid Sequence ,Molecular Biology ,Telomere-binding protein ,Nuclease ,Binding Sites ,Cell Biology ,Molecular biology ,Telomere ,Minisatellite ,chemistry ,biology.protein ,Recombinant DNA ,DNA ,Protein Binding - Abstract
The biological function of hnRNP family proteins is widely diverse and involved in pre-mRNA processing, transcriptional regulation, recombination, and telomere maintenance. In the course of our study on the elucidation of biological functions of minisatellite DNA, we isolated several nuclear proteins that bind to the mouse minisatellite Pc-1, which consists of a tandem array of d(GGCAG) repeats, from NIH3T3 cells. One of the minisatellite binding proteins, MNBP-A, which binds to a single-stranded G-rich strand of the Pc-1 repeat, was proven identical to the hnRNP A3. Recombinant hnRNP A3 was demonstrated to bind to the single-stranded telomeric d(TTAGGG) repeat with much higher affinity than the d(GGCAG) repeat. Binding of hnRNP A3 to the single-stranded telomeric repeat protected the repeat from nuclease attack, and inhibited both telomerase reaction and DNA synthesis in vitro. These results suggest a possible biological role of hnRNP A3 in the stable maintenance of telomere repeats.
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- 2007
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21. Salvage immuno-chemotherapy with a combination of rituximab, high-dose cytarabine, mitoxantrone and dexamethasone for patients with primary CNS lymphoma: A preliminary study
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Masakazu Sano, Naoki Yajima, Junpei Homma, Yoshikatsu Shinbo, Akira Hasegawa, Takashi Saitoh, Ryuichi Tanaka, Ryuya Yamanaka, Naoto Tsuchiya, and Hideaki E. Takahashi
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Oncology ,Cancer Research ,Mitoxantrone ,medicine.medical_specialty ,business.industry ,Immuno-Chemotherapy ,Hematology ,Primary CNS Lymphoma ,High dose cytarabine ,Internal medicine ,medicine ,Rituximab ,business ,Dexamethasone ,medicine.drug - Published
- 2007
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22. Immuno-chemotherapy with a combination of rituximab, methotrexate, pirarubicin and procarbazine for patients with primary CNS lymphoma—A preliminary report
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Junpei Homma, Ryuya Yamanaka, Masakazu Sano, Naoto Tsuchiya, Kiyoshi Onda, Akira Hasegawa, Ryuichi Tanaka, Yoshikatsu Shinbo, and Naoki Yajima
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Oncology ,Cancer Research ,medicine.medical_specialty ,business.industry ,Pirarubicin ,Hematology ,medicine.disease ,Procarbazine ,Lymphoma ,Leukemia ,Primary CNS Lymphoma ,Preliminary report ,Internal medicine ,Immunology ,medicine ,Methotrexate ,Rituximab ,business ,medicine.drug - Abstract
To cite this Article: Yamanaka, Ryuya, Homma, Junpei, Sano, Masakazu, Tsuchiya, Naoto, Yajima, Naoki, Shinbo, Yoshikatsu, Hasegawa, Akira, Onda, Kiyoshi and Tanaka, Ryuichi , 'Immuno-chemotherapy with a combination of rituximab, methotrexate, pirarubicin and procarbazine for patients with primary CNS lymphoma A preliminary report', Leukemia and Lymphoma, 48:5, 1019 1022 To link to this article: DOI: 10.1080/10428190701248009 URL: http://dx.doi.org/10.1080/10428190701248009
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- 2007
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23. Induction of abnormal nuclear shapes in two distinct modes by overexpression of serine/threonine protein phosphatase 5 in Hela cells
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Sachiyo Takagi, Minako Nagao, Hitoshi Nakagama, Naoto Tsuchiya, Kaori Hara-Fujita, and Hirokazu Fukuda
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Recombinant Fusion Proteins ,Molecular Sequence Data ,Phosphatase ,Cell ,Biochemistry ,HeLa ,Serine ,Phosphoprotein Phosphatases ,medicine ,Animals ,Humans ,Amino Acid Sequence ,Threonine ,Nuclear membrane ,Molecular Biology ,Cell Nucleus ,biology ,Cell Cycle ,fungi ,Nuclear Proteins ,Cell Biology ,Cell cycle ,biology.organism_classification ,Molecular biology ,Rats ,Tetratricopeptide ,medicine.anatomical_structure ,Mutation ,Sequence Alignment ,HeLa Cells - Abstract
Okadaic acid-sensitve serine/threonine protein phosphatase 5 (PP5) is expressed ubiquitously in various tissues and is considered to participate in many cellular processes. PP5 has a catalytic domain in the C-terminal region and three tetratricopeptide repeat (TPR) motifs in the N-terminal region, which are suspected to function as a protein–protein interaction domain. Physiological roles of PP5 are still largely unknown, although several PP5-binding proteins were reported and a few in vivo functions of PP5 were suggested. In the present study, the effects of expression of the full-length wild-type PP5 fused with EGFP (EGFP-PP5WT) and its phosphatase-dead mutant EGFP-PP5H304A were investigated. Transient expression of either EGFP-PP5WT or EGFP-PP5H304A in HeLa cells induced deformed nuclei with a 10-fold frequency compared to that of EGFP. Abnormal-shaped nuclei were also substantially increased by induced moderate expression of PP5 in tet-on HeLa cells. Many HeLa cells expressing EGFP-PP5WT possessed multi-nuclei separated from each other by nuclear membrane, while expression of EGFP-PP5H304A induced deformed nuclei which were multiple-like in shape, but not separated completely and were surrounded by one nuclear membrane. These results suggest that PP5 plays important roles at the M-phase of the cell cycle, especially in separation of chromosomes and formation of nuclear membrane. J. Cell. Biochem. 101: 321–330, 2007. © 2006 Wiley-Liss, Inc.
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- 2007
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24. Salvage therapy and late neurotoxicity in patients with recurrent primary CNS lymphoma treated with a modified ProMACE-MOPP hybrid regimen
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Naoki Yajima, Ryuichi Tanaka, Masakazu Sano, Jumpei Homma, Hiroaki Hondoh, Tetsuro Tamura, Ken Morii, Yoshikatsu Shinbo, Ryuya Yamanaka, Hideaki E. Takahashi, Naoto Tsuchiya, and Kiyoshi Onda
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Adult ,Male ,Cancer Research ,medicine.medical_specialty ,Lymphoma ,Cyclophosphamide ,medicine.medical_treatment ,Pirarubicin ,Salvage therapy ,Gastroenterology ,Central Nervous System Neoplasms ,Internal medicine ,Antineoplastic Combined Chemotherapy Protocols ,medicine ,Humans ,Mechlorethamine ,Etoposide ,Aged ,Retrospective Studies ,Salvage Therapy ,Chemotherapy ,business.industry ,Primary central nervous system lymphoma ,Hematology ,Middle Aged ,medicine.disease ,Combined Modality Therapy ,Survival Analysis ,Surgery ,Radiation therapy ,Regimen ,Methotrexate ,Oncology ,Doxorubicin ,Vincristine ,Procarbazine ,Prednisone ,Female ,Neurotoxicity Syndromes ,Neoplasm Recurrence, Local ,business ,medicine.drug - Abstract
We report the efficacy of salvage therapy with a modified ProMACE-MOPP combined with radiation in patients with primary central nervous system lymphoma (PCNSL). Thirty-two immunocompetent patients were treated with a regimen of pirarubicin, cyclophosphamide, etoposide, vincristin, and methotrexate (MTX: 500 mg/m(2)) administered in 21-day cycles. Patients received 20 Gy of whole-brain radiotherapy after three cycles of chemotherapy. A single cycle of chemotherapy was repeated every four months for two years. Nine patients with CNS relapse were retreated with additional cycles of the ProMACE-MOPP hybrid regimen with a 90% objective response rate. Median complete response (CR) duration was 13.2 months and median survival time (MST) for the nine patients treated after initial relapse was 30 months. One of 17 patients (5.8%) who had less than 20 Gy of whole brain irradiation developed dementia. In contrast, six of seven (85.7%) patients who had more than 30 Gy of whole brain radiotherapy became demented. Maintaining a moderate dose of MTX, while adding chemotherapeutic agents and 20 Gy of whole brain radiation therapy, improved disease control and overall survival and lowered the incidence of delayed neurologic toxicity in patients with PCNSL. Additional treatment with a ProMACE-MOPP hybrid regimen is still effective for relapsed disease.
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- 2007
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25. Molecular mechanisms for maintenance of G-rich short tandem repeats capable of adopting G4 DNA structures
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Hirokazu Fukuda, Etsuko Tanaka, Katsuhiko Nakashima, Hitoshi Nakagama, Naoto Tsuchiya, Kumiko Higuchi, and Masato Katahira
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Guanine ,Heterogeneous nuclear ribonucleoprotein ,Health, Toxicology and Mutagenesis ,Biology ,Genome ,Mice ,chemistry.chemical_compound ,Trinucleotide Repeats ,Tandem repeat ,Genetics ,Animals ,Direct repeat ,Molecular Biology ,Polymorphism, Genetic ,Base Sequence ,Circular Dichroism ,3T3 Cells ,DNA ,Telomere ,Molecular Weight ,Minisatellite ,chemistry ,Tandem Repeat Sequences ,Nucleic Acid Conformation ,Homologous recombination - Abstract
Mammalian genomes contain several types of repetitive sequences. Some of these sequences are implicated in various specific cellular events, including meiotic recombination, chromosomal breaks and transcriptional regulation, and also in several human disorders. In this review, we document the formation of DNA secondary structures by the G-rich repetitive sequences that have been found in several minisatellites, telomeres and in various triplet repeats, and report their effects on in vitro DNA synthesis. d(GGCAG) repeats in the mouse minisatellite Pc-1 were demonstrated to form an intra-molecular folded-back quadruplex structure (also called a G4' structure) by NMR and CD spectrum analyses. d(TTAGGG) telomere repeats and d(CGG) triplet repeats were also shown to form G4' and other unspecified higher order structures, respectively. In vitro DNA synthesis was substantially arrested within the repeats, and this could be responsible for the preferential mutability of the G-rich repetitive sequences. Electrophoretic mobility shift assays using NIH3T3 cell extracts revealed heterogeneous nuclear ribonucleoprotein (hnRNP) A1 and A3, which were tightly and specifically bound to d(GGCAG) and d(TTAGGG) repeats with K(d) values in the order of nM. HnRNP A1 unfolded the G4' structure formed in the d(GGCAG)(n) and d(TTAGGG)(n) repeat regions, and also resolved the higher order structure formed by d(CGG) triplet repeats. Furthermore, DNA synthesis arrest at the secondary structures of d(GGCAG) repeats, telomeres and d(CGG) triplet repeats was efficiently repressed by the addition of hnRNP A1. High expression of hnRNPs may contribute to the maintenance of G-rich repetitive sequences, including telomere repeats, and may also participate in ensuring the stability of the genome in cells with enhanced proliferation. Transcriptional regulation of genes, such as c-myc and insulin, by G4 sequences found in the promoter regions could be an intriguing field of research and help further elucidate the biological functions of the hnRNP family of proteins in human diseases.
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- 2006
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26. Identification of expressed genes characterizing long-term survival in malignant glioma patients
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A Oide, Masakazu Sano, Tokuzo Arao, Ryuya Yamanaka, Ryuichi Tanaka, Junpei Homma, Naoto Tsuchiya, Masaru Sekijima, Kazuto Nishio, and Naoki Yajima
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Adult ,Male ,Cancer Research ,Small interfering RNA ,DNA, Complementary ,Time Factors ,Adolescent ,Biology ,Bioinformatics ,Predictive Value of Tests ,Cell Line, Tumor ,Glioma ,Genetics ,medicine ,Humans ,Gene silencing ,Molecular Biology ,Survival analysis ,Aged ,Oligonucleotide Array Sequence Analysis ,Aged, 80 and over ,DDR1 ,Predictive marker ,Gene Expression Profiling ,Middle Aged ,Prognosis ,medicine.disease ,Survival Analysis ,Gene expression profiling ,Cancer research ,Female ,DNA microarray - Abstract
Better understanding of the underlying biology of malignant gliomas is critical for the development of early detection strategies and new therapeutics. This study aimed to define genes associated with survival. We investigated whether genes coupled with a class prediction model could be used to define subgroups of high-grade gliomas in a more objective manner than standard pathology. RNAs from 29 malignant gliomas were analysed using Agilent microarrays. We identified 21 genes whose expression was most strongly and consistently related to patient survival based on univariate proportional hazards models. In six out of 10 genes, changes in gene expression were validated by quantitative real-time PCR. After adjusting for clinical covariates based on a multivariate analysis, we finally obtained a statistical significance level for DDR1 (discoidin domain receptor family, member 1), DYRK3 (dual-specificity tyrosine-(Y)-phosphorylation-regulated kinase 3) and KSP37 (Ksp37 protein). In independent samples, it was confirmed that DDR1 protein expression was also correlated to the prognosis of glioma patients detected by immunohistochemical staining. Furthermore, we analysed the efficacy of the short interfering RNA (siRNA)-mediated inhibition of DDR1 mRNA synthesis in glioma cell lines. Cell proliferation and invasion were significantly suppressed by siRNA against DDR1. Thus, DDR1 can be a novel molecular target of therapy as well as an important predictive marker for survival in patients with glioma. Our method was effective at classifying high-grade gliomas objectively, and provided a more accurate predictor of prognosis than histological grading.
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- 2006
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27. Unfolding of higher DNA structures formed by the d(CGG) triplet repeat by UP1 protein
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Masato Katahira, Minako Nagao, Hirokazu Fukuda, Naoto Tsuchiya, Kumiko Higuchi, Yoshiaki Enokizono, Etsuko Tanaka, and Hitoshi Nakagama
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Untranslated region ,congenital, hereditary, and neonatal diseases and abnormalities ,Circular dichroism ,DNA synthesis ,Cell Biology ,Biology ,Molecular biology ,Exon ,chemistry.chemical_compound ,chemistry ,Genetics ,Electrophoretic mobility shift assay ,Trinucleotide repeat expansion ,Gene ,DNA - Abstract
Fragile X syndrome is caused by expansion of a d(CGG) triplet repeat in the 5'-untranslated region of the first exon of the FMR1 gene resulting in silencing of the gene. The d(CGG) repeat has been reported to form hairpin and quadruplex structures in vitro, and formation of these higher structures could be responsible for its unstable expansion in the syndrome, although molecular mechanisms underlying the repeat expansion still remain elusive. We have previously proved that UP1, a proteolytic product of hnRNP A1, unfolds the intramolecular quadruplex structures of d(GGCAG)5 and d(TTAGGG)4 and abrogates the arrest of DNA synthesis at d(GGG)n sites. Here, we demonstrate that the d(CGG) repeat forms a peculiar DNA structure, which deviates from the canonical B-form structure. In addition, UP1 was demonstrated by CD spectrum analysis to unfold this characteristic higher structure of the d(CGG) repeat and to abrogate the arrest of DNA synthesis at the site. This ability of UP1 suggests that unfolding of unusual DNA structures of a triplet repeat is required for DNA synthesis processes.
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- 2005
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28. LRP130, a single-stranded DNA/RNA-binding protein, localizes at the outer nuclear and endoplasmic reticulum membrane, and interacts with mRNA in vivo
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Hirokazu Fukuda, Minako Nagao, Naoto Tsuchiya, Hitoshi Nakagama, Katsuhiko Nakashima, and Takashi Sugimura
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Biophysics ,Biology ,Endoplasmic Reticulum ,Biochemistry ,Mice ,Animals ,Humans ,Inner membrane ,RNA, Messenger ,Molecular Biology ,Cell Nucleus ,Messenger RNA ,Endoplasmic reticulum membrane ,Nucleoplasm ,Reverse Transcriptase Polymerase Chain Reaction ,Binding protein ,Endoplasmic reticulum ,RNA-Binding Proteins ,RNA ,Intracellular Membranes ,Cell Biology ,Subcellular localization ,Molecular biology ,Neoplasm Proteins ,Microscopy, Fluorescence ,HeLa Cells ,Subcellular Fractions - Abstract
LRP130 (also known as a LRPPRC) is an RNA and single-stranded DNA-binding protein, and recently identified as a candidate gene responsible for the Leigh syndrome, a French-Canadian type cytochrome c oxidase deficiency. However, the biological function of LRP130 still remains largely unresolved. In the present study, we found that the C-terminal half of the mouse LRP130 located within a 120 amino acid sequence (a.a. 845–964) binds to synthetic RNA homopolymers, poly(G), poly(U), and poly(C), as well as r(CUGCC)6. Assessment of the subcellular localization indicated both nuclear/endoplasmic reticulum (ER) and mitochondrial fractions to be positive. To further analyze the subcellular localization of LRP130, a nuclear/ER fraction was fractionated into the nucleoplasm (NP) and nuclear envelope (NE)/ER, and the latter was further separated into outer nuclear membrane (ONM)/ER and inner nuclear membrane (INM) by treatment with Triton X-100. LRP130 was detectable in all three fractions, and the distribution pattern was in good accordance with that known for ONM/ER proteins. Interestingly, immunostaining of HeLa cells demonstrated nuclear rim staining of LRP130, specifically at the outside of the NE and also at ER, and association of LRP130 with poly(A)+ RNA was restricted only to the ONM/ER fraction. Overexpression of full-length mouse LRP130 fused with EGFP resulted in nuclear accumulation of poly(A)+ RNA in HeLa cells. Taking all these results together, it is suggested that LRP130, a novel type of RNA-binding protein, associates with mRNA/mRNP complexes at the outside of NE and ER, and plays a role in control of mRNA metabolisms.
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- 2004
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29. LRP130, a protein containing nine pentatricopeptide repeat motifs, interacts with a single-stranded cytosine-rich sequence of mouse hypervariable minisatellite Pc-1
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Hirokazu Fukuda, Naoto Tsuchiya, Takashi Sugimura, Hitoshi Nakagama, and Minako Nagao
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Messenger RNA ,Minisatellite ,Molecular mass ,Cytoplasm ,Immunoprecipitation ,Complementary DNA ,Pentatricopeptide repeat ,Biology ,Biochemistry ,DNA-binding protein ,Molecular biology - Abstract
Recently, we have identified and purified minisatellite DNA binding proteins (MNBPs) that bind to the mouse hypervariable minisatellite Pc-1, from NIH3T3 cells. This study describes the isolation and characterization of a mouse leucine-rich protein (mLRP130) as one of the MNBPs that binds to the C-rich strand of Pc-1. The mLRP130 cDNA was demonstrated to encode a polypeptide of 1306 amino-acid residues with a deduced molecular mass of 137 kDa, and the mLRP130 mRNA is detected in various organs, including heart, brain, liver, skeletal muscle, kidneys and testes. The mLRP130 protein has nine copies of pentatricopeptide repeat (PPR) motifs that are considered to serve as protein–protein interactions. Two forms of the mLRP130 protein were detected in NIH3T3 cells with an approximate molecular mass of 140 kDa (mLRP130) and 100 kDa (mLRP130der), and were detected mainly in nuclear and cytoplasmic fractions, respectively. Immunofluorescence microscopic analysis demonstrated dominant localization of mLRP130 at the perinuclear region, and also in the nucleus and cytoplasm with dot- or squiggle-like staining. The immunoprecipitated mLRP130 bound to the single-stranded d(CTGCC)8, but not to its complementary G-rich strand of d(GGCAG)8 or double-stranded form. Possible biological roles of mLRP130 are discussed in association with the stability of minisatellite DNA sequences.
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- 2002
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30. Unfolding of higher DNA structures formed by the d(CGG) triplet repeat by UP1 protein
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Hirokazu, Fukuda, Masato, Katahira, Etsuko, Tanaka, Yoshiaki, Enokizono, Naoto, Tsuchiya, Kumiko, Higuchi, Minako, Nagao, and Hitoshi, Nakagama
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Dose-Response Relationship, Drug ,Circular Dichroism ,Heterogeneous Nuclear Ribonucleoprotein A1 ,Electrophoretic Mobility Shift Assay ,DNA ,Recombinant Proteins ,Potassium Chloride ,DNA-Binding Proteins ,Thymus Hormones ,Kinetics ,Ribonucleoproteins ,Trinucleotide Repeats ,Heterogeneous-Nuclear Ribonucleoprotein Group A-B ,Humans ,Nucleic Acid Conformation - Abstract
Fragile X syndrome is caused by expansion of a d(CGG) triplet repeat in the 5'-untranslated region of the first exon of the FMR1 gene resulting in silencing of the gene. The d(CGG) repeat has been reported to form hairpin and quadruplex structures in vitro, and formation of these higher structures could be responsible for its unstable expansion in the syndrome, although molecular mechanisms underlying the repeat expansion still remain elusive. We have previously proved that UP1, a proteolytic product of hnRNP A1, unfolds the intramolecular quadruplex structures of d(GGCAG)5 and d(TTAGGG)4 and abrogates the arrest of DNA synthesis at d(GGG)n sites. Here, we demonstrate that the d(CGG) repeat forms a peculiar DNA structure, which deviates from the canonical B-form structure. In addition, UP1 was demonstrated by CD spectrum analysis to unfold this characteristic higher structure of the d(CGG) repeat and to abrogate the arrest of DNA synthesis at the site. This ability of UP1 suggests that unfolding of unusual DNA structures of a triplet repeat is required for DNA synthesis processes.
- Published
- 2005
31. Tumor lysate and IL-18 loaded dendritic cells elicits Th1 response, tumor-specific CD8+ cytotoxic T cells in patients with malignant glioma
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Ryuya Yamanaka, Junpei Honma, Naoto Tsuchiya, Tsutomu Kobayashi, Ryuichi Tanaka, and Naoki Yajima
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Male ,Cancer Research ,medicine.medical_treatment ,Genes, MHC Class I ,Biology ,CD8-Positive T-Lymphocytes ,Immunotherapy, Adoptive ,Lymphocytes, Tumor-Infiltrating ,Antigen ,T-Lymphocyte Subsets ,Transduction, Genetic ,Glioma ,medicine ,Tumor Cells, Cultured ,Cytotoxic T cell ,Humans ,Aged ,Brain Neoplasms ,Lymphoblast ,Interleukin-18 ,Immunotherapy ,T lymphocyte ,Dendritic cell ,Dendritic Cells ,Th1 Cells ,medicine.disease ,Neurology ,Oncology ,Culture Media, Conditioned ,Immunology ,Cancer research ,Female ,Neurology (clinical) ,CD8 ,T-Lymphocytes, Cytotoxic - Abstract
In this study, we demonstrate that tumor lysate-loaded dendritic cells can elicit a specific CD8+ cytotoxic T lymphocyte response against autologous tumor cells in patients with malignant glioma. CTL from three of five patients expressed strong cytolytic activity against autologous glioma cells, did not lyse autologous lymphoblasts and were variably cytotoxic against the LAK-sensitive cell line Daudi. Also, DCs pulsed normal brain lysate failed to induce cytolytic activity against autologous glioma cells, suggesting the lack of autoimmune response. Two of five patients CD8+ T cells expressed a modest cytotoxicity against autologous glioma cells. CD8+ T cells isolated during these ineffective primings secreted large amounts of IL-10, less amounts of IFN-gamma as detected by ELISA, Type 2 bias in the CD8+ T cell response accounts for the lack of cytotoxic effector function from these patients. Cytotoxicity against autologous glioma cells could be significantly inhibited by anti-HLA class I antibody. These data demonstrate that tumor lysate-loaded DC can be an effective tool in inducing glioma-specific CD8+ CTL able to kill autologous glioma cells in vitro. However, high levels of tumor specific tolerance in some patients may account for a significant barrier to therapeutic vaccination. Moreover, cytotoxic responses were augmented by transfecting DC with the gene for IL-18. For all five patients, CD8+T cells treated with IL18 transfected DC produced Th1 response. These results may have important implications for the treatment of malignant glioma patients with immunotherapy. DCs loaded with total tumor lysate and IL-18 may represent a method for inducing Th1 immunoresponses against the entire repertoire of glioma antigens.
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- 2005
32. LRP130, a protein containing nine pentatricopeptide repeat motifs, interacts with a single-stranded cytosine-rich sequence of mouse hypervariable minisatellite Pc-1
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Naoto, Tsuchiya, Hirokazu, Fukuda, Takashi, Sugimura, Minako, Nagao, and Hitoshi, Nakagama
- Subjects
Binding Sites ,DNA, Complementary ,Amino Acid Motifs ,Molecular Sequence Data ,DNA, Single-Stranded ,3T3 Cells ,DNA, Satellite ,Neoplasm Proteins ,DNA-Binding Proteins ,Cytosine ,Mice ,Drug Stability ,Animals ,Amino Acid Sequence ,RNA, Messenger ,Subcellular Fractions - Abstract
Recently, we have identified and purified minisatellite DNA binding proteins (MNBPs) that bind to the mouse hypervariable minisatellite Pc-1, from NIH3T3 cells. This study describes the isolation and characterization of a mouse leucine-rich protein (mLRP130) as one of the MNBPs that binds to the C-rich strand of Pc-1. The mLRP130 cDNA was demonstrated to encode a polypeptide of 1306 amino-acid residues with a deduced molecular mass of 137 kDa, and the mLRP130 mRNA is detected in various organs, including heart, brain, liver, skeletal muscle, kidneys and testes. The mLRP130 protein has nine copies of pentatricopeptide repeat (PPR) motifs that are considered to serve as protein-protein interactions. Two forms of the mLRP130 protein were detected in NIH3T3 cells with an approximate molecular mass of 140 kDa (mLRP130) and 100 kDa (mLRP130der), and were detected mainly in nuclear and cytoplasmic fractions, respectively. Immunofluorescence microscopic analysis demonstrated dominant localization of mLRP130 at the perinuclear region, and also in the nucleus and cytoplasm with dot- or squiggle-like staining. The immunoprecipitated mLRP130 bound to the single-stranded d(CTGCC)8, but not to its complementary G-rich strand of d(GGCAG)8 or double-stranded form. Possible biological roles of mLRP130 are discussed in association with the stability of minisatellite DNA sequences.
- Published
- 2002
33. Cloning and characterization of a cDNA encoding a novel heterogeneous nuclear ribonucleoprotein-like protein and its expression in myeloid leukemia cells
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Naoto Tsuchiya, Michiyuki Yamada, Akira Takano, Daisuke Kamei, and Takaaki Matsui
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Chloramphenicol O-Acetyltransferase ,Heterogeneous nuclear ribonucleoprotein ,DNA, Complementary ,Molecular Sequence Data ,RNA-binding protein ,Biochemistry ,Chloramphenicol acetyltransferase ,Genes, Reporter ,Complementary DNA ,Tumor Cells, Cultured ,Humans ,Amino Acid Sequence ,Cloning, Molecular ,Molecular Biology ,Peptide sequence ,Gene Library ,Peroxidase ,Messenger RNA ,Reporter gene ,Base Sequence ,Sequence Homology, Amino Acid ,Chemistry ,Intron ,RNA-Binding Proteins ,General Medicine ,DNA ,Molecular biology ,Introns ,Recombinant Proteins ,Gene Expression Regulation, Neoplastic ,Ribonucleoproteins ,Leukemia, Myeloid - Abstract
We isolated a cDNA encoding a novel heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein on DNA affinity screening of a K562 cDNA expression library with an oligodeoxynucleotide (JKT41) derived from intron 9 of the human myeloperoxidase gene. The cDNA has a 1,305 bp sequence that encodes a polypeptide of 301 amino acid residues. The protein, named JKTBP, contains two repeats of a putative RNA binding domain (RBD), each composed of canonical RNP-2 and RNP-1 motifs, and a glycine- and tyrosine-rich carboxyl terminus. The sequences of these two repeats are highly homologous with those of the 2 x RBD-Gly rich group of hnRNPs. Northern blotting showed that two mRNAs of approximately 1.4 and 2.8 kb were present in most cultured cells examined. The recombinant protein expressed in Escherichia coli interacted with the double-stranded form of JKT41 as well as with its single-stranded form. This interaction was competitively inhibited by the same unlabeled JKT41 and to nearly the same extent by unrelated oligonucleotides. Moreover, the recombinant protein interacted with poly(G) and poly(A), but not with poly(U) or poly(C). Transient expression of the protein in SKM-1 cells repressed the expression of chloramphenicol acetyltransferase reporter genes located downstream of the intron 9 element of JKT41 or intron 7 element of FERE27. The implications of the protein in the biogenesis of mRNA are discussed.
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- 1998
34. Mechanism for the decrease in the accumulation of cadmium (Cd) in Cd-resistant Chinese hamster V79 cells
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Naoto Tsuchiya and Takafumi Ochi
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Male ,Health, Toxicology and Mutagenesis ,Drug Resistance ,chemistry.chemical_element ,chemical and pharmacologic phenomena ,Mersalyl Acid ,Mersalyl ,Toxicology ,Chinese hamster ,Cell Line ,Cricetulus ,Cadmium Chloride ,Cadmium Radioisotopes ,Chlorides ,Cricetinae ,mental disorders ,medicine ,Animals ,Incubation ,Cadmium ,biology ,Chemistry ,Cell Membrane ,Sulfhydryl Reagents ,Membrane Proteins ,General Medicine ,Hydrogen-Ion Concentration ,biology.organism_classification ,Molecular biology ,In vitro ,Mechanism of action ,Membrane protein ,Biochemistry ,Efflux ,medicine.symptom - Abstract
The mechanism for the decrease in the accumulation of cadmium (Cd) in Cd-resistant Chinese hamster V79 (Cdr) cells in culture was investigated in a comparison with Cd-sensitive (Cds) cells. Both Cdr and Cds cells took up Cd in a time-dependent manner but the rate of uptake of Cd by Cdr cells was about 15% of that by Cds cells. Kinetic studies of the uptake of Cd showed that the Vmax values for Cdr and Cds cells were 0.31 and 0.46 pmol Cd/h per mg protein, respectively. The Km values were 31.95 microM for Cdr cells and 3.15 microM for Cds cells. Mersalyl acid, a sulfhydryl (SH) blocker to which cells are impermeable, inhibited the uptake of Cd by Cds cells at subtoxic concentrations while Cdr cells were insensitive to inhibition by mersalyl acid, suggesting that SH groups in the plasma membrane play a role in the uptake of Cd. Uptake of Cd by Cds cells was dependent on the pH of the incubation medium and the rate of uptake was very high at pH 7.4 and pH 8.0 relative to the rates at pH 6.0 and pH 6.8. By contrast, the uptake of Cd by Cdr cells was lower at all pH values than that by Cds cells. The decrease in the rate of uptake of Cd by Cdr cells could not be ascribed to an increase in the efflux of Cd. A Cd-blotting technique was used to detect plasma membrane proteins with high affinity for Cd. Two major differences in terms of Cd-binding proteins (Cd-BPs) were observed between Cdr and Cds cells. A 110-kDa Cd-BP, detected in Cds cells, was found at a reduced level in Cdr cells, while an 82-kDa Cd-BP, which was not observed in Cds cells, was detected in Cdr cells.
- Published
- 1994
35. An Integrated Prognostic Classifier for Stage I Lung Adenocarcinoma Based on mRNA, microRNA, and DNA Methylation Biomarkers.
- Author
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Robles, Ana I., Arai, Eri, Mathé, Ewy A., Hirokazu Okayama, Schetter, Aaron J., Brown, Derek, Petersen, David, Bowman, Elise D., Noro, Rintaro, Welsh, Judith A., Edelman, Daniel C., Stevenson, Holly S., Yonghong Wang, Naoto Tsuchiya, Takashi Kohno, Vidar Skaug, Mollerup, Steen, Haugen, Aage, Meltzer, Paul S., and Jun Yokota
- Published
- 2015
- Full Text
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