178 results on '"Marti-Renom, Marc a"'
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2. LATS1 controls CTCF chromatin occupancy and hormonal response of 3D-grown breast cancer cells
3. Principles of 3D chromosome folding and evolutionary genome reshuffling in mammals
4. Insights into the mechanisms underlying aberrant SOX11 oncogene expression in mantle cell lymphoma
5. Three-dimensional genome organization via triplex-forming RNAs
6. 4D nucleome modeling
7. 4D Genome Rewiring during Oncogene-Induced and Replicative Senescence
8. CHESS enables quantitative comparison of chromatin contact data and automatic feature extraction
9. 3D mapping and accelerated super-resolution imaging of the human genome using in situ sequencing
10. CTCF is dispensable for immune cell transdifferentiation but facilitates an acute inflammatory response
11. Dynamics of genome architecture and chromatin function during human B cell differentiation and neoplastic transformation
12. The impact of chromosomal fusions on 3D genome folding and recombination in the germ line
13. Three-Dimensional Genomic Structure and Cohesin Occupancy Correlate with Transcriptional Activity during Spermatogenesis
14. Specific Contributions of Cohesin-SA1 and Cohesin-SA2 to TADs and Polycomb Domains in Embryonic Stem Cells
15. Communicating Genome Architecture: Biovisualization of the Genome, from Data Analysis and Hypothesis Generation to Communication and Learning
16. Human pancreatic islet three-dimensional chromatin architecture provides insights into the genetics of type 2 diabetes
17. RNA proximity sequencing reveals the spatial organization of the transcriptome in the nucleus
18. Detecting Remotely Related Proteins by Their Interactions and Sequence Similarity
19. Muscle progenitor specification and myogenic differentiation are associated with changes in chromatin topology
20. Enhancer-driven 3D chromatin domain folding modulates transcription in human mammary tumor cells.
21. Promoter bivalency favors an open chromatin architecture in embryonic stem cells
22. Distinct roles of cohesin-SA1 and cohesin-SA2 in 3D chromosome organization
23. Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming
24. Binless normalization of Hi-C data provides significant interaction and difference detection independent of resolution
25. The Conformation of Yeast Chromosome III Is Mating Type Dependent and Controlled by the Recombination Enhancer
26. On the demultiplexing of chromosome capture conformation data
27. Restraint-based three-dimensional modeling of genomes and genomic domains
28. Lamin B1 mapping reveals the existence of dynamic and functional euchromatin lamin B1 domains
29. A Novel Family of Soluble Minimal Scaffolds Provides Structural Insight into the Catalytic Domains of Integral Membrane Metallopeptidases
30. Challenges for visualizing three‐dimensional data in genomic browsers
31. Genome structure determination via 3C-based data integration by the Integrative Modeling Platform
32. The Three-Dimensional Architecture of a Bacterial Genome and Its Alteration by Genetic Perturbation
33. Chromatin globules: a common motif of higher order chromosome structure?
34. The anti-immune dengue subgenomic flaviviral RNA is present in vesicles in mosquito saliva and is associated with increased infectivity.
35. Structure-based statistical analysis of transmembrane helices
36. Structure determination of genomic domains by satisfaction of spatial restraints
37. Protein translocation into peroxisomes by ring-shaped import receptors
38. Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package
39. Refinement of Protein Structures by Iterative Comparative Modeling and CryoEM Density Fitting
40. The AnnoLite and AnnoLyze programs for comparative annotation of protein structures
41. Membrane protein integration into the endoplasmic reticulum
42. All-atom knowledge-based potential for RNA structure prediction and assessment
43. N-glycosylation efficiency is determined by the distance to the C-terminus and the amino acid preceding an Asn-Ser-Thr sequon
44. Single-cell absolute contact probability detection reveals chromosomes are organized by multiple low-frequency yet specific interactions
45. Alignment of multiple protein structures based on sequence and structure features
46. SARA: a server for function annotation of RNA structures
47. ModLink+: improving fold recognition by using protein–protein interactions
48. MODBASE, a database of annotated comparative protein structure models and associated resources
49. Coordinated changes in gene expression, H1 variant distribution and genome 3D conformation in response to H1 depletion.
50. Identification of chromatin loops from Hi-C interaction matrices by CTCF–CTCF topology classification.
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