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Abstract: We tested the hypothesis that field applications of arbuscular mycorrhizal (AM) inocula would increase root colonization and plant performance in a coastal sage scrub (CSS) restoration project in Southern [...]

Copyright of Journal of Applied Ecology is the property of Wiley-Blackwell and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

As invasive grasses encroach upon native ecosystems, they have the potential to transform intact California coastal sage scrub (CSS) into non-native grasslands. This occurs—in part—due to legacy effects: changes in soil microbial composition elicited by grass invasions with long-term impacts on soil and native vegetation. Along with direct effects on CSS vegetation, legacy effects may alter microbial communities which may in turn impact native plant growth. To tease apart these factors, we monitored growth in three CSS species inoculated with either uninvaded soil or sterilized uninvaded soil that were subsequently planted into a site characterized by observed microbial legacy effects. Our findings indicate native plant growth can be explained by changes in soil microorganisms. Specifically, native Artemisia californica and Baccharis pilularis grew larger in plots with unsterilized uninvaded soil inoculum, which contained a larger abundance of Gemmatimonadetes and Glomus, compared to the sterilized soil inoculum plots. Therefore, microbial augmentation may not only improve restoration in post-invasive sites but long-term changes in soil microbial communities may be linked to native plant growth. Furthermore, adding uninvaded soil replete with native microbes has the potential to support restoration of invaded sites by promoting native plant survival and establishment in these restored ecosystems. [ABSTRACT FROM AUTHOR]

Dust provides an ecologically significant input of nutrients, especially in slowly eroding ecosystems where chemical weathering intensity limits nutrient inputs from underlying bedrock. In addition to nutrient inputs, incoming dust is a vector for dispersing dust-associated microorganisms. While little is known about dust-microbial dispersal, dust deposits may have transformative effects on ecosystems far from where the dust was emitted. Using molecular analyses, we examined spatiotemporal variation in incoming dust microbiomes along an elevational gradient within the Sierra Nevada of California. We sampled throughout two dry seasons and found that dust microbiomes differed by elevation across two summer dry seasons (2014 and 2015), which corresponded to competing droughts in dust source areas. Dust microbial taxa richness decreased with elevation and was inversely proportional to dust heterogeneity. Likewise, dust phosphorus content increased with elevation. At lower elevations, early season dust microbiomes were more diverse than those found later in the year. The relative abundances of microbial groups shifted during the summer dry season. Furthermore, mutualistic fungal diversity increased with elevation, which may have corresponded with the biogeography of their plant hosts. Although dust fungal pathogen diversity was equivalent across elevations, elevation and sampling month interactions for the relative abundance, diversity, and richness of fungal pathogens suggest that these pathogens differed temporally across elevations, with potential implications for humans and wildlife. This study shows that landscape topography and droughts in source locations may alter the composition and diversity of ecologically relevant dust-associated microorganisms. [ABSTRACT FROM AUTHOR]

Background and Aims Crohn's disease is a debilitating chronic inflammatory disorder of the mammalian gastrointestinal tract. Current interventions using anti-tumour necrosis factor [anti-TNF] biologics show long-term benefit in only half of patients. This study focused on the role of the TNF receptor 1 [TNFR1] in pathogenesis in a TNF-driven model of ileitis. Methods We studied TNFΔAU-rich element [ARE]/+ [TNFdARE] mice, which develop progressive ileitis similar to Crohn's ileitis. Histopathological analysis and gene expression profiling were used to characterize disease progression from 5 to 16 weeks. Mice with TNFR1 hemizygosity [TNFdARE/R1het] allowed us to assess gene dosage effects. Transcriptional profiling established inflection points in disease progression; inflammatory gene expression increased at 8 weeks with a plateau by 10 weeks, so these were selected as endpoints of treatment using the TNF biologic infliximab and the TNFR1-specific XPro1595. Differences in recruitment of cells in the lamina propria were assessed using flow cytometry. Results TNFdARE/R1het mice displayed stable long-term protection from disease, associated with decreased recruitment of CD11bhiF4/80lo monocytes and CD11bhiLy6Ghi neutrophils, suggesting an important role of TNFR1 signalling in pathogenesis, and indicating potential benefit from TNFR1-specific intervention. Treatment with infliximab and XPro1595 both showed a similar impact on disease in TNFdARE mice. Importantly, these beneficial effects were greatly surpassed by hemizygosity at the TNFR1 locus. Conclusions Treatment with either infliximab or XPro1595 produced moderate protection from ileitis in TNFdARE mice. However, hemizygosity at the TNFR1 locus in TNFdARE mice showed far better protection, implicating TNFR1 signalling as a key mediator of TNF-driven disease. [ABSTRACT FROM AUTHOR]

Purpose: Substantial studies report about the extent of elevated CO2 (eCO2) and nitrogenous (N) fertilization or deposition above- and belowground. Although CO2 concentrations are expected to be more than 1000 μmol·mol−1 by 2100 (IPCC 2014), there are relatively few studies about the effects of highly concentrated eCO2 plus N fertilization on woody plants. Materials and methods: Schima superba seedlings were exposed to eCO2 and N fertilization in open-top chambers (OTCs), including ambient air (400 μmol·mol−1), 550, 750, and 1000 μmol mol−1 and 5, 10, or 0 g N m−2·year−1, respectively. Plant photosynthesis (Pn), leaf/root carbon (C) and N, and biomass were analyzed; furthermore, soil microbial community structure was examined. Results and discussion: After only one growing season, the combination of eCO2 and N fertilization increased Pn. N fertilization also increased plant biomass. The combined effect of higher CO2 concentration with N fertilization further stimulated plant biomass. Soil fungal community structure was altered by eCO2 via affecting leaf N and C/N. Moreover, N fertilization changed the composition of soil bacterial communities, which in part was driven by soil NO3−, as well as root C/N. Although eCO2 and N fertilization yielded a direct relationship of synergistic effects on Pn and plant biomass, they elicited contrasting effects on soil copiotrophic and oligotrophic groups, which mediate the soil microbial community structure and nutrient cycling. Conclusions: Plant growth and soil microbial communities could be affected within short time scales by global change. Experimental manipulations that focus on the singular effects of either CO2 or N fertilization alone may underestimate the effects of global change on woody plants. [ABSTRACT FROM AUTHOR]

Although the Salton Sea was once a thriving destination for humans and wildlife, it has now degraded to the point of ecosystem collapse. Increases in local dust emissions have introduced aeolian (wind-blown) microorganisms that travel, along with contaminants and minerals, into the atmosphere, detrimentally impacting inhabitants of the region. Proliferation of certain microbial groups in regions of the Sea may have a disproportionate impact on local ecological systems. Yet, little is known about how the biogeochemical processes of this drying lakebed influence microbial community composition and dispersal. To elucidate how these microorganisms contribute, and adapt, to the Sea's volatile conditions, we synthesize research on three niche-specific microbiomes -- exposed lakebed (playa), the Sea, and aeolian -- and highlight modern molecular techniques, such as metagenomics, coupled with physical science methodologies, including transport modeling, to predict how the drying lakebed will affect microbial processes. We argue that an explicit consideration of microbial groups within this system is needed to provide vital information about the distribution and functional roles of ecologically pertinent microbial groups. Such knowledge could help inform regulatory measures aimed at restoring the health of the Sea's human and ecological systems. [ABSTRACT FROM AUTHOR]

The Salton Sea is a drying salt lake in an arid region with high aerosol particulate-matter concentrations. This region is plagued by a high incidence of asthma, attributed in part to the aerosols surrounding the Sea. But the connection between the Sea and asthma may be more than simple calculations of dust concentrations. While dusts might contain toxic substances that impact the lungs of residents, the complex dynamics related to the environmental degradation of the Salton Sea may be generating additional toxins relevant to public health, such as microcystins produced by algal blooms. This collection of pollutants may be driving inflammatory responses in the lungs of residents through multiple mechanisms. As such, examination of the full range of potential environmental triggers of lung inflammation promises to yield a better understanding of key mechanisms driving the high incidence of asthma in local residents. Our discussion provides a perspective aiming to re-frame the issue in the context of the historical theory of "miasma" and the linkages between environmental change and health impacts. [ABSTRACT FROM AUTHOR]

Although many studies have reported the negative effects of elevated O 3 on plant physiological characteristics, the influence of elevated O 3 on below-ground processes and soil microbial functioning is less studied. In this study, we examined the effects of elevated O 3 on soil properties, soil microbial biomass, as well as microbial community composition using high-throughput sequencing. Throughout one growing season, one-year old seedlings of two important endemic trees in subtropical China: Taxus chinensis (Pilger) Rehd. var. chinensis , and Machilus ichangensis Rehd. Et Wils, were exposed to charcoal-filtered air (CF as control), 100 nl l−1 (E100) or 150 nl l−1 (E150) O 3 -enriched air, in open top chambers (OTCs). We found that only higher O 3 exposure (E150) significantly decreased soil microbial biomass carbon and nitrogen in M. ichangensis , and the contents of organic matter were significantly decreased by E150 in both tree species. Although both levels of O 3 exposure decreased NO 3 -N in T. chinensis , only E150 increased NO 3 -N in M. ichangensis , and there were no effects of O 3 on NH 4 -N. Moreover, elevated O 3 elicited changes in soil microbial community structure and decreased fungal diversity in both M. ichangensis and T. chinensis. However, even though O 3 exposure reduced bacterial diversity in M. ichangensis , no effect of O 3 exposure on bacterial diversity was detected in soil grown with T. chinensis. Our results showed that elevated O 3 altered the abundance of bacteria and fungi in general, and in particular reduced nitrifiers and increased the relative abundance of some fungal taxa capable of denitrification, which may stimulate N 2 O emissions. Overall, our findings indicate that elevated O 3 not only impacts the soil microbial community structure, but may also exert an influence on the functioning of microbial communities. Unlabelled Image • Elevated O 3 changed the structure and decreased diversity of the soil microbial community. • Elevated O 3 reduced nitrifiers and hindered nitrification. • Relative abundance of N 2 O producer increased under elevated O 3 treatments • Ozone level and soil pH drove bacterial and fungal community structure. • Soil microbial genera affiliated with M. ichangensis exhibited higher O 3 sensitivity than those associated with T. chinensis. [ABSTRACT FROM AUTHOR]

Human activities accelerate acidification, particularly as acid rain, which may have lasting impacts on soil abiotic and biotic parameters. However, the effects of acidification on aboveground vegetation, belowground communities, and carbon cycling remains unresolved. We examined the effects of long-term acidic treatments and Pisolithus tinctorius inoculation on plants, soils, and microbial communities in pine (Pinus) plantations and found that exposure to severely-acidic treatments diminished plant performance, altered microbial communities, and decreased organic matter, nitrate, and available phosphorus. Although we did not detect any benefits of P. tinctorius inoculation for Pinus seedlings impacted by severely-acidic treatments, when these severe treatments were inoculated with P. tinctorius , both soil properties and microbial community composition shifted. We posit that inoculation with P. tinctorius may alleviate stressful environmental conditions, and change the structure of mycorrhizal fungal communities. Although acidification may alter biogeochemical cycles and constrain aboveground and belowground communities, P. tinctorius inoculation may provide benefits to some components of forested ecosystems. [ABSTRACT FROM AUTHOR]

Air pollution poses a significant threat to the environment and human health. Most in vivo health studies conducted regarding air pollutants, including particulate matter (PM) and gas phase pollutants, have been either through traditional medical intranasal treatment or using a tiny chamber, which limit animal activities. In this study, we designed and tested a large, whole-body, multiple animal exposure chamber with uniform dispersion and exposure stability for animal studies. The chamber simultaneously controls particle size distribution and PM mass concentration. Two different methods were used to generate aerosol suspension through either soluble material (Alternaria extract), liquid particle suspension (nanosilica solution), or dry powder (silica powder). We demonstrate that the chamber system provides well controlled and characterized whole animal exposures, where dosage is by inhalation of particulate matter. [ABSTRACT FROM AUTHOR]

Habitat fragmentation is widespread across ecosystems, detrimentally affecting biodiversity. Although most habitat fragmentation studies have been conducted on macroscopic organisms, microbial communities and fungal processes may also be threatened by fragmentation. This study investigated whether fragmentation, and the effects of fragmentation on plants, altered fungal diversity and function within a fragmented shrubland in southern California. Using fluorimetric techniques, we assayed enzymes from plant litter collected from fragments of varying sizes to investigate enzymatic responses to fragmentation. To isolate the effects of plant richness from those of fragment size on fungi, we deployed litter bags containing different levels of plant litter diversity into the largest fragment and incubated in the field for one year. Following field incubation, we determined litter mass loss and conducted molecular analyses of fungal communities. We found that leaf-litter enzyme activity declined in smaller habitat fragments with less diverse vegetation. Moreover, we detected greater litter mass loss in litter bags containing more diverse plant litter. Additionally, bags with greater plant litter diversity harbored greater numbers of fungal taxa. These findings suggest that both plant litter resources and fungal function may be affected by habitat fragmentation’s constraints on plants, possibly because plant species differ chemically, and may thus decompose at different rates. Diverse plant assemblages may produce a greater variety of litter resources and provide more ecological niche space, which may support greater numbers of fungal taxa. Thus, reduced plant diversity may constrain both fungal taxa richness and decomposition in fragmented coastal shrublands. Altogether, our findings provide evidence that even fungi may be affected by human-driven habitat fragmentation via direct effects of fragmentation on plants. Our findings underscore the importance of restoring diverse vegetation communities within larger coastal sage scrub fragments and suggest that this may be an effective way to improve the functional capacity of degraded sites. [ABSTRACT FROM AUTHOR]

Fungal community composition often shifts in response to warmer temperatures, which might influence decomposition of recalcitrant carbon (C). We hypothesized that evolutionary trade-offs would enable recalcitrant C-using taxa to respond more positively to warming than would labile C-using taxa. Accordingly, we performed a warming experiment in an Alaskan boreal forest and examined changes in the prevalence of fungal taxa. In a complementary field trial, we characterized the ability of fungal taxa to use labile C (glucose), intermediate C (hemicellulose or cellulose), or recalcitrant C (lignin). We also assigned taxa to functional groups (e.g., free-living filamentous fungi, ectomycorrhizal fungi, and yeasts) based on taxonomic identity. We found that response to warming varied most among taxa at the order level, compared to other taxonomic ranks. Among orders, ability to use lignin was significantly related to increases in prevalence in response to warming. However, the relationship was weak, given that lignin use explained only 9% of the variability in warming responses. Functional groups also differed in warming responses. Specifically, free-living filamentous fungi and ectomycorrhizal fungi responded positively to warming, on average, but yeasts responded negatively. Overall, warming-induced shifts in fungal communities might be accompanied by an increased ability to break down recalcitrant C. This change in potential function may reduce soil C storage under global warming. [ABSTRACT FROM AUTHOR]

Copyright of Botany is the property of Canadian Science Publishing and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Few studies have investigated how soil fungal communities respond to elevation, especially within TMCF (tropical montane cloud forests). We used an elevation gradient in a TMCF in Costa Rica to determine how soil properties, processes, and community composition of fungi change in response to elevation and across seasons. As elevation increased, soil temperature and soil pH decreased, while soil moisture and soil C:N ratios increased with elevation. Responses of these properties varied seasonally. Fungal abundance increased with elevation during wet and dry seasons. Fungal community composition shifted in response to elevation, and to a lesser extent by season. These shifts were accompanied by varying responses of important fungal functional groups during the wet season and the relative abundance of certain fungal phyla. We suggest that elevation and the responses of certain fungal functional groups may be structuring fungal communities along this elevation gradient. TMCF are ecosystems that are rapidly changing due to climate change. Our study suggests that these changes may affect how fungal communities are structured. [ABSTRACT FROM AUTHOR]

Inoculation may influence mycorrhizal colonization and provide benefits to plants in restoration projects. However, it is unclear whether inoculation has consistent effects across ecosystem types, if it has long-term effects on colonization, and whether sources of inocula differ in their effectiveness. To address these issues, we performed a meta-analysis of published restoration studies across a variety of ecosystems to examine the effects of mycorrhizal inoculation on mycorrhizal establishment and plant growth under field conditions. Although we included trials from a variety of geographic locations, disturbance types, and ecosystem types, the majority were based in temperate ecosystems in the Northern Hemisphere, and fewer trials were from tropical ecosystems. Across ecosystem types, we found that inoculation consistently increased the abundance of mycorrhizal fungi in degraded ecosystems, and thus improved the establishment of plants. These benefits did not significantly attenuate over time. Moreover, inocula from different sources varied in their effects on mycorrhizal colonization. Inocula sourced from reference ecosystems and inocula with specific fungal species yielded higher increases in mycorrhizal colonization than did inocula from commercial sources. These results suggest that inocula source matters, and that an initial investment into mycorrhizal inoculation could provide lasting benefits for facilitating the establishment of the below- and aboveground components of restored ecosystems. [ABSTRACT FROM AUTHOR]

Although fungal communities are known to vary along latitudinal gradients, mechanisms underlying this pattern are not well-understood. We used high-throughput sequencing to examine the large-scale distributions of soil fungi and their relation to evolutionary history. We tested the Tropical Conservatism Hypothesis, which predicts that ancestral fungal groups should be more restricted to tropical latitudes and conditions than would more recently derived groups. We found support for this hypothesis in that older phyla preferred significantly lower latitudes and warmer, wetter conditions than did younger phyla. Moreover, preferences for higher latitudes and lower precipitation levels were significantly phylogenetically conserved among the six younger phyla, possibly because the older phyla possess a zoospore stage that is vulnerable to drought, whereas the younger phyla retain protective cell walls throughout their life cycle. Our study provides novel evidence that the Tropical Conservatism Hypothesis applies to microbes as well as plants and animals. [ABSTRACT FROM AUTHOR]

Simple Summary: Slugs are significant pests, physically damaging plants from their voracious appetite as well as dispersing bacteria which could be harmful to plants and humans. They produce substantial economic costs, both as a direct result of plant destruction, and indirectly through attempts of pest control. This study explored the ecological aspects of the bacterial microbiome of Ambigolimax valentianus, a slug invasive to California. We identified a core microbiome in A. valentianus and found that their bacterial microbiome can be influenced and may depend substantially on both diet and environment. We also found that A. valentianus slugs harbor ecologically important bacteria, therefore their dispersal could have environmental and agricultural implications for both crop health and plant science. Future studies that provide a better understanding of the slug bacterial microbiome may be an important step in the development of comprehensive slug management. Ambigolimax valentianus is an invasive European terrestrial gastropod distributed throughout California. It is a serious pest of gardens, plant nurseries, and greenhouses. We evaluated the bacterial microbiome of whole slugs to capture a more detailed picture of bacterial diversity and composition in this host. We concentrated on the influences of diet and environment on the Ambigolimax valentianus core bacterial microbiome as a starting point for obtaining valuable information to aid in future slug microbiome studies. Ambigolimax valentianus were collected from two environments (gardens or reared from eggs in a laboratory). DNA from whole slugs were extracted and next-generation 16S rRNA gene sequencing was performed. Slug microbiomes differed between environmental sources (garden- vs. lab-reared) and were influenced by a sterile diet. Lab-reared slugs fed an unsterile diet harbored greater bacterial species than garden-reared slugs. A small core microbiome was present that was shared across all slug treatments. This is consistent with our hypothesis that a core microbiome is present and will not change due to these treatments. Findings from this study will help elucidate the impacts of slug-assisted bacterial dispersal on soils and plants, while providing valuable information about the slug microbiome for potential integrated pest research applications. [ABSTRACT FROM AUTHOR]

Although the underlying mechanisms remain unknown, soils from different forest types exhibit distinct acidification-buffering capacities. We investigated soil properties and bacterial communities across five plantation types and different soil horizons in a severely acid-polluted site in Southwest China and evaluated the potential mechanisms driving differences in community structure. Soils collected from pure stands of Pinus massoniana Lamb.or Schima superba Gardn. et Champ. or mixed stands of these species showed the lowest soil pH and greater abundances of acid-producing and acidophilic taxa (Halanaerobiales and Rhodospirillales). Soils from pure stands of Cinnamomum camphora (Linn) Presl, or a mixture of C. camphora and P. massoniana, yielded the greatest concentrations of exchangeable calcium (Ca) and magnesium (Mg) and greater soil pH. Increased relative abundances of beneficial taxa may have contributed to soil aggregate formation (e.g., Bradyrhizobium canariense and Terracidiphilus sp.) and heightened environmental stress resistance (e.g., Gaiellales). Fewer acid-producing and acidophilic taxa found in soils associated with C. camphora suggest that planting C. camphora may help soils recover from acidification, while planting S. superba may not be as beneficial. Our findings illustrate how differences in soil microbial communities may impact soil-acidification-buffering capacity across different forest types, which have important implications for understanding environmental functions within the context of microbial diversity. [ABSTRACT FROM AUTHOR]

Although aboveground metrics remain the standard, restoring functional ecosystems should promote both aboveground and belowground biotic communities. Restoration using salvaged soil—removal and translocation of topsoil from areas planned for development, with subsequent deposition at degraded sites—is an alternative to traditional methods. Salvaged soil contains both seed and spore banks, which may holistically augment restoration. Salvaged soil methods may reduce non-native germination by burying non-native seeds, increase native diversity by adding native seeds, or transfer soil microbiomes, including arbuscular mycorrhizal fungi (AMF), to recipient sites. We transferred soil to three degraded recipient sites and monitored soil microbes, using flow cytometry and molecular analyses, and characterized the plant community composition. Our findings suggest that salvaged soil at depths ≥5 cm reduced non-native grass cover and increased native plant density and species richness. Bacterial abundance at recipient sites were statistically equivalent to donor sites in abundance. Overall, topsoil additions affected AMF alpha diversity and community composition and increased rhizophilic AMF richness. Because salvaged soil restoration combines multiple soil components, including native plant and microbial propagules, it may promote both aboveground and belowground qualities of the donor site, when applying this method for restoring invaded and degraded ecosystems. [ABSTRACT FROM AUTHOR]

• Live soil inoculation caused seedlings to produce more biomass. • Roots grown with native inoculation had higher AMF and non-AMF colonization. • Native inoculation promotes more diverse communities of AM and EM fungi. Feedbacks between plants and surrounding soil microbes can contribute to the establishment and persistence of invasive annual grasses as well as limit the success of restoration efforts. In this study, we aim to understand how three sources of soil inocula – native, invasive (from under Bromus diandrus) and sterile – affect the growth response and fungal community composition in the roots of a chaparral shrub, Adenostoma fasciculatum. We grew A. fasciculatum from seed in a greenhouse with each inoculum source and harvested at six months. We measured above- and below-ground biomass, arbuscular mycorrhizal fungal (AMF) colonization and conducted targeted-amplicon sequencing of the 18S and ITS2 loci to characterize AMF and general fungal community composition, respectively. Native inoculum resulted in roots with richer communities of some groups of AMF and non-AMF symbionts, when compared to roots grown with invasive or sterile inoculum. Seedlings grown with invasive and native inoculum did not have different growth responses, but both produced more biomass than a sterile control. These findings suggest that inoculation with soil from native species can increase the diversity of multiple groups of fungal symbionts and inoculation with live soil (invasive or native) can increase seedling biomass. Moreover, future work would benefit from assessing if a more diverse community of fungal symbionts increases seedling survival when planted in field restoration sites. [ABSTRACT FROM AUTHOR]

We tested the hypothesis that field applications of arbuscular mycorrhizal (AM) inocula would increase root colonization and plant performance in a coastal sage scrub (CSS) restoration project in Southern California. We applied commercial or native inocula (from nearby reference shrublands) as we seeded plots with native shrubs, forbs, and grasses. A control treatment was seeded but received no inocula. After 6 months, AM root colonization did not differ significantly among treatments. Likewise, neither inoculum type significantly altered shoot biomass of native shrubs and forbs at 6 months, or density of adult and seedling shrubs at 10 months. Notably, shoot height at 10 months was shorter in plots treated with commercial inoculum compared with the controls. In addition, flower and flower bud production by Salvia columbariae did not significantly respond to either inoculum type. Altogether, we found no evidence that AM inoculation improved restoration success in our CSS system. [ABSTRACT FROM AUTHOR]