Search

Abstract Background The microbiota of multicellular organisms undergoes considerable changes during host ontogeny but the general mechanisms that control community assembly and succession are poorly understood. Here, we use bacterial recolonization experiments in Nematostella vectensis as a model to understand general mechanisms determining bacterial establishment and succession. We compared the dynamic establishment of the microbiome on the germfree host and on inert silicone tubes. Results Following the dynamic reconstruction of microbial communities on both substrates, we show that the initial colonization events are strongly influenced by the host but not by the silicone tube, while the subsequent bacteria-bacteria interactions are the main driver of bacterial succession. Interestingly, the recolonization pattern on adult hosts resembles the ontogenetic colonization succession. This process occurs independently of the bacterial composition of the inoculum and can be followed at the level of individual bacteria. To identify potential metabolic traits associated with initial colonization success and potential metabolic interactions among bacteria associated with bacterial succession, we reconstructed the metabolic networks of bacterial colonizers based on their genomes. These analyses revealed that bacterial metabolic capabilities reflect the recolonization pattern, and the degradation of chitin might be a selection factor during early recolonization of the animal. Concurrently, transcriptomic analyses revealed that Nematostella possesses two chitin synthase genes, one of which is upregulated during early recolonization. Conclusions Our results show that early recolonization events are strongly controlled by the host while subsequent colonization depends on metabolic bacteria-bacteria interactions largely independent of host ontogeny. Video Abstract

Strongly correlated electron systems are one of the central topics in contemporary solid-state physics. Prominent examples for such systems are Kondo lattices, i.e., intermetallic materials in which below a critical temperature, the Kondo temperature T_{K}, the magnetic moments become quenched and the effective masses of the conduction electrons approach the mass of a proton. In Ce- and Yb-based systems, this so-called heavy-fermion behavior is caused by interactions between the strongly localized 4f and itinerant electrons. A major and very controversially discussed issue in this context is how the localized electronic degree of freedom gets involved in the Fermi surface (FS) upon increasing the interaction between both kinds of electrons or upon changing the temperature. In this paper, we show that the FS of a prototypic Kondo lattice, YbRh_{2}Si_{2}, does not change its size or shape in a wide temperature range extending from well below to far above the single-ion Kondo temperature T_{K}∼25 K of this system. This experimental observation, obtained by means of angle-resolved photoemission spectroscopy, is in remarkable contrast to the widely believed evolution from a large FS, including the 4f degrees of freedom, to a small FS, without the 4f’s, upon increasing temperature. Our results explicitly demonstrate a need to further advance in theoretical approaches based on the periodic Anderson model in order to elucidate the temperature dependence of Fermi surfaces in Kondo lattices.