35 results on '"Liñan C"'
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2. Coronavirus pandemic: An opportunity to study the anthropogenic impact on micro-climate conditions and CaCO3 crystal morphology in the Nerja Cave (SE Spain)
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Liñán, C., de Cisneros, C. Jiménez, Benavente, J., Vadillo, I., del Rosal, Y., and Ojeda, L.
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- 2023
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3. Coupling air temperature records and gravimetric data to interpret ventilation patterns in a Mediterranean karstic system (Nerja-Pintada caves, southern Spain)
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Liñán, C., Ojeda, L., Benavente, J., del Rosal, Y., Vadillo, I., and Carrasco, F.
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- 2020
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4. Influence of the heating process on the use of gypsum wastes in plasters: Mechanical, thermal and environmental analysis
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Pedreño-Rojas, M.A., Flores-Colen, I., De Brito, J., and Rodríguez-Liñán, C.
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- 2019
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5. Highlighting the importance of transitional ventilation regimes in the management of Mediterranean show caves (Nerja-Pintada system, southern Spain)
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Liñán, C., del Rosal, Y., Carrasco, F., Vadillo, I., Benavente, J., and Ojeda, L.
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- 2018
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6. Eco-efficient acoustic and thermal conditioning using false ceiling plates made from plaster and wood waste
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Pedreño-Rojas, M.A., Morales-Conde, M.J., Pérez-Gálvez, F., and Rodríguez-Liñán, C.
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- 2017
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7. Physical and mechanical properties of wood-gypsum composites from demolition material in rehabilitation works
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Morales-Conde, M.J., Rodríguez-Liñán, C., and Pedreño-Rojas, M.A.
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- 2016
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8. Early versus late nephrology referral and patient outcomes in chronic kidney disease: an updated systematic review and meta-analysis
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Linan Cheng, Nan Hu, Di Song, Li Liu, and Yuqing Chen
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Chronic renal insufficiency ,Referral ,Meta-analysis ,Mortality ,Diseases of the genitourinary system. Urology ,RC870-923 - Abstract
Abstract Background Nephrology referral has been recognized as a modifiable factor influencing patient outcomes. The study aimed to compare clinical outcomes among patients referred early versus late to nephrologists. Methods We searched online database from inception to June 1, 2022, to obtain all eligible literature reporting outcomes of patients referred early versus late to nephrologists. The early and late referral was defined by the time at which patients were referred to nephrologists before dialysis onset. Results Seventy-two studies with over 630,000 patients met the inclusion criteria. A lower likelihood of all-cause mortality (HR = 0.67, 95% CI: 0.62–0.72) was achieved among patients referred early to nephrologists. The survival advantage of early referral was apparent in the first 6 months and extended to the 5th year after dialysis onset (6 months: HR = 0.52, 95% CI: 0.40–0.68; 5 years: HR = 0.67, 95% CI: 0.60–0.74). The early referral was associated with shorter durations of initial hospitalization, a higher rate of kidney transplantation (RR = 1.41, 95% CI: 1.12–1.78), a lower likelihood of emergency start (RR = 0.39, 95% CI: 0.28–0.54), a higher likelihood of permanent access creation (RR = 3.34, 95% CI: 2.43–4.59), increased initial use of permanent access (RR = 2.60, 95% CI: 2.18–3.11), and reduced initial catheter use (RR = 0.43, 95% CI: 0.32–0.58). Conclusions Our study showed a lower risk of mortality, shorter lengths of initial hospitalization, and better preparations for renal replacement therapy among patients referred early to nephrologists. Early nephrology care should be promoted to improve the management of advanced chronic kidney disease.
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- 2025
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9. Translation and validation of the Chinese version of the Attitudes Related to Trauma-Informed Care (ARTIC-C) scale in nursing inters: a psychometric analysis
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Qin Qin, Luqing Zheng, Le Chen, Yang Yang, Huifang Li, Jingjing Wang, Linan Cheng, and Noorsuzana Mohd Shariff
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Trauma-informed care ,Nursing interns ,Psychometric ,Reliability ,Validity ,Nursing ,RT1-120 - Abstract
Abstract Background Nursing interns, the future nurses, often find it challenging to interact with trauma survivors due to their lack of experience and training. Assessing their attitudes and knowledge in trauma-informed care can improve their clinical performance. Objective To culturally adapt and assess the reliability and validity of the Attitudes Related to Trauma-Informed Care Scale in Chinese nursing interns. Design Quantitative cross-sectional design. Methods The translation of Attitudes Related to the Trauma-Informed Care (ARTIC) Scale followed guidelines for the cross-cultural adaptation process. A survey was conducted with 490 nursing interns from two colleges in China in February and May 2024, and seven experts evaluated the content equivalence of each item. Reliability and validity were assessed using item analysis, exploratory factor analysis, confirmatory factor analysis, internal consistency reliability, and test–retest reliability. Results The Chinese version of the ARTIC-C retained 35 items and demonstrated high content validity. Exploratory factor analysis revealed a 6-factor structure, explaining 61.887% of the total variance. Confirmatory factor analysis indicated that the 6-factor model adequately represented the scale structure: chi-square/degree of freedom (CMIN/DF) = 1.544, root mean square error of approximation (RMSEA) = 0.045, comparative fit index (CFI) = 0.969, incremental fit index (IFI) = 0.969, Tucker Lewis index (TLI) = 0.966, and standardized root mean square residual (SRMR) = 0.046. The scale had a Cronbach's alpha of 0.916 and test–retest reliability of 0.876. Conclusions The Chinese version of the ARTIC-C scale has demonstrated strong reliability and validity, making it an effective tool for measuring Chinese nursing interns' attitudes and knowledge regarding trauma-informed care.
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- 2024
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10. Bending and shear reinforcements for timber beams using GFRP plates
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Morales-Conde, M.J., Rodríguez-Liñán, C., and Rubio-de Hita, P.
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- 2015
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11. Associations of NPPA promoter true methylation and hydroxymethylation with ischemic stroke and its functional outcome
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Jialing Yao, Linghua Song, Jun Jiang, Jianan Zhang, Linan Chen, Wenxiu Fan, Ying Lu, Xiaolong Zhang, Jiexiang Jing, Yibing Jin, Mingzhi Zhang, Yongang Hao, and Hao Peng
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Atrial natriuretic peptide ,DNA methylation ,DNA hydroxymethylation ,Ischemic stroke ,Genetics ,QH426-470 - Abstract
Abstract Background Atrial natriuretic peptide (ANP) has been associated with ischemic stroke (IS), but the underlying molecular mechanisms are not clear. The objective of this study was to examine whether DNA methylation and hydroxymethylation in the coding gene of ANP (NPPA) were associated with IS, as well as its functional outcome. Methods and results DNA methylation and hydroxymethylation in NPPA promoter region were quantified by targeted bisulfite sequencing and APOBEC-coupled epigenetic sequencing, respectively, in 615 IS patients and 610 age- and sex-matched healthy controls. True methylation was calculated as the quantified methylation level minus the quantified hydroxymethylation level. The functional outcome of IS was evaluated by the modified Rankin Scale (mRS) at a 3-month follow-up visit after onset. Multiple testing was controlled by the false discovery rate approach. Of the nine CpG sites assayed, hypomethylation at eight CpGs was not only associated with an increased risk of having IS but also predicted a higher mRS score after onset (all q
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- 2024
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12. Growth hormone treatment for sustained pain reduction and improvement in quality of life in severe fibromyalgia
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Cuatrecasas, Guillem, Alegre, C., Fernandez-Solà, J., Gonzalez, M.J., Garcia-Fructuoso, F., Poca-Dias, V., Nadal, A., Cuatrecasas, Gabriel, Navarro, F., Mera, A., Lage, M., Peinó, R., Casanueva, F., Liñan, C., Sesmilo, G., Coves, M.J., Izquierdo, J.P., Alvarez, I., Granados, E., and Puig-Domingo, M.
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- 2012
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13. Association Between Genetically Determined Serum Corin and the Risk of Stroke in Chinese Adults: A Mendelian Randomization Study
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Yang Liu, Linan Chen, Guozhe Sun, Hao Zhang, Wenqing Geng, Xinwei Li, Qiu Zhang, Yibing Jin, Jialing Yao, Xiangdong Yang, Wenxiu Fan, Jiexiang Jing, Shuyao Wang, and Hao Peng
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corin ,Mendelian randomization ,stroke ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Background Serum corin has been associated with stroke in observational studies, but the underlying causality is uncertain. This study examined the causal association between corin and stroke through Mendelian randomization study. Methods and Results In the Gusu cohort, serum corin was assayed at baseline, and stroke incidents were prospectively obtained during 10 years of follow‐up. Single‐nucleotide polymorphisms (SNPs) in CORIN were genotyped by MassArray for 2310 participants (mean age, 53 years; 39% men). Seventeen SNPs passed the Hardy–Weinberg test and were considered the potential instruments. Only 1 SNP (rs2271037) determined variability of serum corin was significantly associated with stroke even after adjusting for conventional risk factors (hazard ratio [HR], 1.36 [95% CI, 1.00–1.85]). The weighted genetic risk score generated from the SNP‐corin associations was significantly associated with stroke (HR, 2.01 [95% CI, 1.15–3.51]). Using this genetic risk score as the instrument, 1‐sample Mendelian randomization analysis found a significant HR of stroke per‐SD higher log2‐transformed corin (HR, 1.37 [95% CI, 1.07–1.76]). The inverse variance–weighted analysis based on the SNP‐corin and SNP‐stroke associations found that the HR of stroke pre‐SD higher log2‐transformed corin was 5.92 (95% CI, 2.23–15.72). The effect estimates stayed consistent regardless of an individual SNP being removed from the instruments. An almost identical effect estimate was also confirmed by multiple other 2‐sample Mendelian randomization methods. Conclusions Genetically determined variations of serum corin concentration were significantly associated with the risk of stroke in Chinese adults. Elevated serum corin may be a risk factor for stroke.
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- 2024
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14. A psychometric assessment of a novel scale for evaluating vaccination attitudes amidst a major public health crisis
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Linan Cheng, Jianhui Kong, Xiaofeng Xie, and Fengying Zhang
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Acceptance attitudes ,Immunization ,Vaccination attitudes ,Public health crisis ,Medicine ,Science - Abstract
Abstract Despite abundant scientific evidence supporting immunization benefits, vaccine hesitancy remains a significant global health concern, particularly during public health crises. Exploring public attitudes towards vaccination is crucial. This study aimed to develop and validate a tailored Public Vaccination Attitudes Scale specifically under the unique circumstances of a public health crisis. A psychometric evaluation was conducted using a cross-sectional study during the peak of a major public health crisis. The scale was developed and its psychometric properties validated using three approaches: (1) generating the item pool through literature research and focus group discussions; (2) assessing the items through expert consultation; and (3) evaluating construct validity, content validity, and internal consistency reliability through exploratory factor analysis (EFA) and confirmatory factor analysis (CFA). Data from a total of 3921 respondents were randomly divided into two subsets, one for EFA (n = 1935) and the other for CFA (n = 1986). A 22-item draft scale with five factors was created after literature research and focus group discussion. The content validity of this scale ranged between 0.88 and 1.00. EFA showed a 17-item scale with four factors (Cronbach’s α > 0.7) accounting for 68.044% of the total variance. CFA showed that the values of the fit indices, including convergent validity and discriminant validity, were excellent or acceptable. The overall Cronbach’s α was 0.874, and each factor ranged from 0.726 to 0.885. This study introduces a valuable tool for assessing vaccination attitudes during public health crises, aiding researchers, policymakers, and nurses in combating vaccine hesitancy. Emphasizing the importance of fostering vaccine acceptance, it enhances disease control during emergencies, contributing to the knowledge needed for more effective public health strategies and crisis responses
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- 2024
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15. The therapeutically actionable long non-coding RNA ‘T-RECS’ is essential to cancer cells’ survival in NRAS/MAPK-driven melanoma
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Valentin Feichtenschlager, Linan Chen, Yixuan James Zheng, Wilson Ho, Martina Sanlorenzo, Igor Vujic, Eleanor Fewings, Albert Lee, Christopher Chen, Ciara Callanan, Kevin Lin, Tiange Qu, Dasha Hohlova, Marin Vujic, Yeonjoo Hwang, Kevin Lai, Stephanie Chen, Thuan Nguyen, Denise P Muñoz, Yoshinori Kohwi, Christian Posch, Adil Daud, Klemens Rappersberger, Terumi Kohwi-Shigematsu, Jean-Philippe Coppé, and Susana Ortiz-Urda
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T-RECS ,lncRNA ,Melanoma ,MAPK-pathway ,hnRNPA2/B1 ,Apoptosis ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Finding effective therapeutic targets to treat NRAS-mutated melanoma remains a challenge. Long non-coding RNAs (lncRNAs) recently emerged as essential regulators of tumorigenesis. Using a discovery approach combining experimental models and unbiased computational analysis complemented by validation in patient biospecimens, we identified a nuclear-enriched lncRNA (AC004540.4) that is upregulated in NRAS/MAPK-dependent melanoma, and that we named T-RECS. Considering potential innovative treatment strategies, we designed antisense oligonucleotides (ASOs) to target T-RECS. T-RECS ASOs reduced the growth of melanoma cells and induced apoptotic cell death, while having minimal impact on normal primary melanocytes. Mechanistically, treatment with T-RECS ASOs downregulated the activity of pro-survival kinases and reduced the protein stability of hnRNPA2/B1, a pro-oncogenic regulator of MAPK signaling. Using patient- and cell line- derived tumor xenograft mouse models, we demonstrated that systemic treatment with T-RECS ASOs significantly suppressed the growth of melanoma tumors, with no noticeable toxicity. ASO-mediated T-RECS inhibition represents a promising RNA-targeting approach to improve the outcome of MAPK pathway-activated melanoma.
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- 2024
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16. Menopausia y envejecimiento en la mujer
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Liñán, C.
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- 2004
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17. Influence of rainfall quantity on the isotopic composition ( 18O and 2H) of water in mountainous areas. Application for groundwater research in the Yunquera-Nieves karst aquifers (S Spain)
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Andreo, B., Liñán, C., Carrasco, F., Jiménez de Cisneros, C., Caballero, F., and Mudry, J.
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- 2004
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18. Status and associated factors of gerontological nurse specialists’ core competency: a national cross-sectional study
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Hongxiu Chen, Lihui Pu, Shengyuan He, Xiuying Hu, Qian Chen, Zhaojing Huang, and Linan Cheng
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Geriatric nursing ,Specialist nurses ,Core competency ,Cross-sectional study ,Influencing factors ,Geriatrics ,RC952-954.6 - Abstract
Abstract Background Nurses’ core competency directly affects patients’ safety and health outcomes. Gerontological nurse specialists play an essential role in improving older adults’ health status. However, little is known about their core competency level and the factors influencing core competency. Therefore, this study aimed to investigate the status of core competency and factors influencing the core competency of gerontological nurse specialists in China. Methods A multicenter cross-sectional study was conducted on gerontological nurse specialists certified by province-level or above organizations across China between March 2019 and January 2020. The Revised Core Competency Evaluation Instrument for Gerontological Nurse Specialists was used to measure participants’ core competency. The median, frequencies, and percentages were used to describe participants’ characteristics and level of core competency. Multivariate stepwise regression analysis was applied to analyze the factors influencing core competency. Results The median score of gerontological nurse specialists’ core competency was 3.84, and professional development skills and research and analysis decision-making skills had the lowest scores among the dimensions. The multivariate stepwise regression analysis showed that individual-level factors (i.e., working experience length of geriatric nursing and attitudes toward caring for older adults), employer-level factors (i.e., departments, job responsibilities, the degree of satisfaction toward the attention and support and the promotion rules provided by the hospital or department), and training-associated factors (i.e., economic zone where training organizations are located and the degree to which the training content met clinical needs) are independently associated with gerontological nurse specialists’ core competency level (P
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- 2023
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19. Multi‐objective digital circuit block optimisation based on cell mapping in an industrial electronic design automation flow
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Linan Cao, Simon J. Bale, and Martin A. Trefzer
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circuit optimisation ,electronic design automation ,integrated circuit design ,VLSI ,Computer engineering. Computer hardware ,TK7885-7895 ,Electronic computers. Computer science ,QA75.5-76.95 - Abstract
Abstract Modern electronic design automation (EDA) tools can handle the complexity of state‐of‐the‐art electronic systems by decomposing them into smaller blocks or cells, introducing different levels of abstraction and staged design flows. However, throughout each independently optimised design step, overheads and inefficiencies can accumulate in the resulting overall design. Performing design‐specific optimisation from a more global viewpoint requires more time due to the larger search space but has the potential to provide solutions with improved performanc. In this work, a fully‐automated, multi‐objective (MO) EDA flow is introduced to address this issue. It specifically tunes drive strength mapping, prior to physical implementation, through MO population‐based search algorithms. Designs are evaluated with respect to their power, performance and area (PPA). The proposed approach is aimed at digital circuit optimisation at the block level, where it is capable of expanding the design space and offers a set of trade‐off solutions for different case‐specific utilisation. We have applied the proposed multi‐objective electronic design automation flow (MOEDA) framework to ISCAS‐85 and EPFL benchmark circuits by using a commercial 65 nm standard cell library. The experimental results demonstrate how the MOEDA flow enhances the solutions initially generated by the standard digital flow and how simultaneously a significant improvement in PPA metrics is achieved.
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- 2023
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20. Parents’ acceptance attitudes towards the vaccination of children based on M-LSGDM approach in China: a cross-sectional study
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Li Zhang, Xiaofeng Xie, Linan Cheng, Jianhui Kong, and Fengying Zhang
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Medicine - Abstract
Objectives Ensuring that children receive timely vaccinations is paramount for preventing infectious diseases, and parental attitude plays a pivotal role in this process. This study addresses this gap in the existing literature by examining parental attitudes towards vaccinating their children.Design A cross-sectional study.Methods An online survey including parents’ sociodemographic characteristics, risk perception and attitudes towards child vaccination towards COVID-19 was conducted. The modified large-scale group decision-making approach for practicality and binary logistic regression was used to identify the predictors influencing parents’ decision-making.Results Of the 1292 parents participated, 957 (74.1%) were willing to vaccinate their children, while 335 (25.9%) refused the vaccination. The study indicated that age, parental anxiety regarding child vaccination, concerns about the child’s susceptibility to the disease, opinions towards vaccination benefits versus disadvantages, place of residence, average family income and children’s health were significant predictors (p
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- 2024
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21. Optimization and Characterization of Microwave-assisted Enzymatic Extraction of Soluble Dietary Fiber from Anli Fruit Pomace
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Xin REN, Fei PENG, Linan CHEN, and Yuedong YANG
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anli fruit pomace ,soluble dietary fiber ,microwave-assisted enzymatic extraction ,process optimization ,structure analysis ,Food processing and manufacture ,TP368-456 - Abstract
In order to improve the comprehensive utilization value of Anli resources, the extraction technology of soluble dietary fiber from Anli pomace was studied with a by-product of food processing in this work. On the basis of single factor test, response surface methodology was used to optimize the microwave-assisted composite enzymatic extraction process of soluble dietary fiber from Anli fruit pomace (ALDF). The structure of the prepared dietary fiber was characterized by scanning electron microscopy (SEM), fourier transform infrared (FT-IR) and high performance liquid chromatography (HPLC). The optimization results showed that when the microwave power was 370 W, the liquid-to-material ratio was 14.4:1 mL/g, the added amount of enzyme was 1.6%, and the pH was 7.0, the yield of ALDF was the highest level of 8.07%. The SEM showed that the ALDF had a spindle shape of about 5 μm in length, FT-IR showed that it had the characteristic peak of polysaccharide, and the molecular weight ranged from 5 to 2.076×104 kDa. The results showed that the microwave-assisted enzymatic method had a good extraction effect on the ALDF with a certain industrial application prospect. Therefore, this method could provide a theoretical basis for the high-value development and utilization of Anli fruit pomace.
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- 2022
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22. Association between soluble neprilysin and diabetes: Findings from a prospective longitudinal study
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Junting Hu, Hanyun Zhu, Yunlang Dai, Yang Liu, Ying Lu, Shasha Zhu, Linan Chen, Mingzhi Zhang, Tingbo Jiang, and Hao Peng
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Chinese ,diabetes ,neprilysin ,prospective longitudinal study ,population epidemiology ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
BackgroundThe potential role of neprilysin (NEP) in glucose metabolism has been found by basic studies but lacks population evidence. The objective of this study was to examine the association between serum NEP and diabetes in Chinese adults.MethodsIn a prospective longitudinal cohort study – the Gusu cohort (n=2,286, mean age: 52 years, 61.5% females), the cross-sectional, longitudinal, and prospective associations between serum NEP and diabetes were systemically examined by logistic regression adjusting for conventional risk factors. Serum NEP was measured at baseline using commercial ELISA assays. Fasting glucose was repeatedly measured 4 years apart.ResultsThe cross-sectional analysis found a positive association between serum NEP and fasting glucose at baseline (β=0.08, P=0.004 for log-transformed NEP). This association persisted after controlling for the dynamic risk profiles during follow-up (β=0.10, P=0.023 for log-transformed NEP). The prospective analysis found that a higher level of serum NEP at baseline was associated with a higher risk of diabetes during follow-up (OR=1.79, P=0.039 for log-transformed NEP).ConclusionsSerum NEP was not only associated with prevalent diabetes but also predicted the future risk of diabetes development in Chinese adults, independent of many behavioral and metabolic factors. Serum NEP may be a predictor and even a new therapeutic target for diabetes. However, the casualty and mechanisms of NEP in the development of diabetes require further investigation.
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- 2023
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23. Association between CORIN promoter methylation and stroke: Results from two independent samples of Chinese adults
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Linan Chen, Jun Jiang, Jialing Yao, Ying Lu, Xiaolong Zhang, Mingzhi Zhang, Qiu Zhang, and Hao Peng
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Corin ,DNA methylation ,stroke ,prospective observational study ,independent replication ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
ObjectiveAs the physical activator of natriuretic peptides, corin has been associated with stroke, but the underlying mechanism is not very clear. Here, we examined whether the CORIN promoter’s methylation, an epigenetic DNA modification, was associated with the risk of stroke in two independent samples.MethodsA total of 1771 participants including 853 stroke cases and 918 healthy controls were included as a discovery sample and 2,498 community members with 10 years of follow-up were included as a replication sample. DNA methylation of the CORIN promoter was quantified by target bisulfite sequencing in both samples. We first examined the single CpG association, followed by a gene-based analysis of the joint association between multiple CpG methylation and stroke, adjusting for conventional risk factors.ResultsThe single CpG association analysis found that hypermethylation at all of the 9 CpG sites assayed was significantly associated with lower odds of prevalent stroke in the discovery sample (all p
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- 2023
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24. Effect of Chestnut (Castanea Mollissima Blume) Bur Polyphenol Extract on Shigella dysenteriae: Antibacterial Activity and the Mechanism
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Fei Peng, Linan Chen, Xiuping Wang, Zuoqing Yu, Caihong Cheng, and Yuedong Yang
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Shigella dysenteriae ,chestnut bur ,antibacterial activity ,metabolomics ,transcriptomics ,Organic chemistry ,QD241-441 - Abstract
Shigella dysenteriae is a highly pathogenic microorganism that can cause human bacillary dysentery by contaminating food and drinking water. This study investigated the antibacterial activity of chestnut bur polyphenol extract (CBPE) on S. dysenteriae and the underlying mechanism. The results showed that the minimum inhibitory concentration (MIC) of CBPE for S. dysenteriae was 0.4 mg/mL, and the minimum bactericidal concentration (MBC) was 1.6 mg/mL. CBPE treatment irreversibly disrupted cell morphology, decreased cell activity, and increased cell membrane permeability, cell membrane depolarization, and cell content leakage of S. dysenteriae, indicating that CBPE has obvious destructive effects on the cell membrane and cell wall of S. dysenteriae. Combined transcriptomic and metabolomics analysis revealed that CBPE inhibits S. dysenteriae by interfering with ABC protein transport, sulfur metabolism, purine metabolism, amino acid metabolism, glycerophospholipid metabolism, and some other pathways. These findings provide a theoretical basis for the prevention and treatment of S. dysenteriae infection with extract from chestnut burs.
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- 2023
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25. Prediction of Transcription Factor Binding Sites Using a Combined Deep Learning Approach
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Linan Cao, Pei Liu, Jialong Chen, and Lei Deng
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transcription factor binding sites ,attention mechanism ,positional embedding ,deep learning ,DNA ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
In the process of regulating gene expression and evolution, such as DNA replication and mRNA transcription, the binding of transcription factors (TFs) to TF binding sites (TFBS) plays a vital role. Precisely modeling the specificity of genes and searching for TFBS are helpful to explore the mechanism of cell expression. In recent years, computational and deep learning methods searching for TFBS have become an active field of research. However, existing methods generally cannot meet high performance and interpretability simultaneously. Here, we develop an accurate and interpretable attention-based hybrid approach, DeepARC, that combines a convolutional neural network (CNN) and recurrent neural network (RNN) to predict TFBS. DeepARC employs a positional embedding method to extract the hidden embedding from DNA sequences, including the positional information from OneHot encoding and the distributed embedding from DNA2Vec. DeepARC feeds the positional embedding of the DNA sequence into a CNN-BiLSTM-Attention-based framework to complete the task of finding the motif. Taking advantage of the attention mechanism, DeepARC can gain greater access to valuable information about the motif and bring interpretability to the work of searching for motifs through the attention weight graph. Moreover, DeepARC achieves promising performances with an average area under the receiver operating characteristic curve (AUC) score of 0.908 on five cell lines (A549, GM12878, Hep-G2, H1-hESC, and Hela) in the benchmark dataset. We also compare the positional embedding with OneHot and DNA2Vec and gain a competitive advantage.
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- 2022
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26. Serum Atrial Natriuretic Peptide, 'NPPA' Promoter Methylation, and Cardiovascular Disease: A 10-year Follow-Up Study in Chinese Adults
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Linan Chen, Jing Li, Min Zhang, Qiu Zhang, Lei Wu, Ying Lu, Yan He, Jun Jiang, Xiaolong Zhang, Jianwei Hu, Yi Ding, Mingzhi Zhang, and Hao Peng
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atrial natriuretic peptide ,cardiovascular disease ,prospective cohort study ,dna methylation ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 ,Public aspects of medicine ,RA1-1270 - Abstract
Background: Atrial natriuretic peptide (ANP) has been associated with cardiovascular disease (CVD) and related risk factors, but the clinical application is limited and the underlying mechanisms are not very clear. Here, we aimed to examine whether proANP and its coding gene methylation were associated with CVD in the Chinese population. Methods: Serum proANP and peripheral blood DNA methylation of natriuretic peptide A gene ('NPPA') promoter was quantified at baseline for 2,498 community members (mean aged 53 years, 38% men) in the Gusu cohort. CVD events were obtained during 10 years of follow-up. A competing-risks survival regression model was applied to examine the prospective associations of proANP and 'NPPA' promoter methylation with incident CVD. Results: During follow-up, 210 participants developed CVD events, 50 participants died from non-cardiovascular causes, and 214 participants were lost. Per 1-nmol/L increment of serum proANP was associated with a 22% (HR = 1.22, 95%CI: 1.03–1.44, 'P' = 0.025) higher risk of CVD during follow-up. Of the 9 CpG sites assayed, per 2-fold increment of DNA methylation at CpG3 (located at Chr1:11908299) was significantly associated with a half lower risk of CVD (HR = 0.50, 95%CI: 0.30–0.82, 'P' = 0.006). The gene-based analysis found that DNA methylation of the 9 CpGs at 'NPPA' promoter as a whole was significantly associated with incident CVD ('P' < 0.05). Conclusions: Increased proANP and hypomethylation at 'NPPA' promoter at baseline predicted an increased future risk of CVD in Chinese adults. Aberrant DNA methylation of the 'NPPA' gene may participate in the mechanisms of CVD.
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- 2022
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27. FURIN Promoter Methylation Predicts the Risk of Incident Diabetes: A Prospective Analysis in the Gusu Cohort
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Yan He, Yinan Li, Jianan Zhang, Linan Chen, Jing Li, Min Zhang, Qiu Zhang, Ying Lu, Jun Jiang, Xiaolong Zhang, Jianwei Hu, Yi Ding, Mingzhi Zhang, and Hao Peng
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furin ,DNA methylation ,diabetes ,prospective observational study ,Chinese ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
BackgroundFurin has been associated with diabetes but the underlying mechanisms are unclear. As a mediator linking fixed genome and dynamic environment, DNA methylation of its coding gene FURIN may be involved. Here, we aimed to examine the prospective association between DNA methylation in FURIN promoter and incident diabetes during 4 years of follow-up in Chinese adults.MethodsDNA methylation levels in FURIN promoter were quantified by target bisulfite sequencing using peripheral blood from 1836 participants in the Gusu cohort who were free of diabetes at baseline. To examine the association between DNA methylation levels in FURIN promoter and incident diabetes, we constructed a logistic regression model adjusting for the conventional factors. Multiple testing was controlled by adjusting for the total number of CpG sites assayed using the false-discovery rate approach.ResultsAmong the 1836 participants free of diabetes at baseline, 109 (5.94%) participants developed diabetes during the average of 4 years of follow-up. Hypermethylation at two of the eight CpG sites assayed in the FURIN promoter was associated with an increased risk of diabetes, after multivariable adjustment and multiple testing correction. Every 5% increment in methylation levels at CpG1 and CpG2 were associated with a 22% (OR=1.22, 95%CI: 1.05-1.43, P=0.009, q=0.038) and 39% (OR=1.39, 95%CI: 1.08-1.77, P=0.009, q=0.038) higher risk of incident diabetes, respectively. The gene-based association analysis revealed that DNA methylation at multiple CpG loci was jointly associated with incident diabetes (P
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- 2022
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28. Association Between Serum Furin and Fasting Glucose: A Cross-Sectional Study in Chinese Adults
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Yan He, Hanyun Zhu, Min Zhang, Jing Li, Shengqi Ma, Yin Lu, Linan Chen, Mingzhi Zhang, and Hao Peng
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furin ,diabetes ,fasting plasma glucose ,Chinese ,cross-sectional study ,risk factor ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
BackgroundFurin has been associated with glucose metabolic phenotypes in small sampled clinical studies. However, this association has not yet been studied in Chinese. Here, we aimed to examine the association between serum furin and fasting glucose in Chinese adults.MethodsSerum furin and fasting plasma glucose were assayed for 2,172 participants (mean aged 53 years, 38% men) in the Gusu cohort. A median regression model was applied to examine the association between serum furin and fasting glucose, adjusting for age, sex, education level, cigarette smoking, alcohol drinking, obesity, blood pressure, and lipids. To facilitate data interpretation, the association between serum furin and prevalent diabetes was also examined.ResultsSerum furin was negatively associated with fasting glucose (β=-0.18, P
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- 2022
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29. NPPA promoter hypomethylation predicts central obesity development: a prospective longitudinal study in Chinese adults
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Jing Li, Jinhua Zhu, Qiu Zhang, Linan Chen, Shengqi Ma, Ying Lu, Bin Shen, Rongyan Zhang, Mingzhi Zhang, Yan He, Lei Wu, and Hao Peng
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Nutrition. Foods and food supply ,TX341-641 ,Nutritional diseases. Deficiency diseases ,RC620-627 - Abstract
Introduction: Atrial natriuretic peptide (ANP) plays a potential role in obesity with unclear molecular mechanisms. The objective of this study was to examine the association between its coding gene (NPPA) methylation and obesity. Methods: Peripheral blood DNA methylation of NPPA promoter was quantified at baseline by targeted bisulfite sequencing for 2,497 community members (mean aged 53 years, 38% men) in the Gusu cohort. Obesity was repeatedly assessed by body mass index (BMI) and waist circumference (WC) at baseline and follow-up examinations. The cross-sectional, longitudinal, and prospective associations between NPPA promoter methylation and obesity were examined. Results: Of the 9 CpG loci assayed, DNA methylation levels at 6 CpGs were significantly lower in participants with central obesity than those without (all P
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- 2021
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30. The effects of surface topography modification on hydrogel properties
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Linan Cui, Yuan Yao, and Evelyn K. F. Yim
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Biotechnology ,TP248.13-248.65 ,Medical technology ,R855-855.5 - Abstract
Hydrogel has been an attractive biomaterial for tissue engineering, drug delivery, wound healing, and contact lens materials, due to its outstanding properties, including high water content, transparency, biocompatibility, tissue mechanical matching, and low toxicity. As hydrogel commonly possesses high surface hydrophilicity, chemical modifications have been applied to achieve the optimal surface properties to improve the performance of hydrogels for specific applications. Ideally, the effects of surface modifications would be stable, and the modification would not affect the inherent hydrogel properties. In recent years, a new type of surface modification has been discovered to be able to alter hydrogel properties by physically patterning the hydrogel surfaces with topographies. Such physical patterning methods can also affect hydrogel surface chemical properties, such as protein adsorption, microbial adhesion, and cell response. This review will first summarize the works on developing hydrogel surface patterning methods. The influence of surface topography on interfacial energy and the subsequent effects on protein adsorption, microbial, and cell interactions with patterned hydrogel, with specific examples in biomedical applications, will be discussed. Finally, current problems and future challenges on topographical modification of hydrogels will also be discussed.
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- 2021
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31. Paediatric nurses’ general self-efficacy, perceived organizational support and perceived professional benefits from Class A tertiary hospitals in Jilin province of China: the mediating effect of nursing practice environment
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Linan Cheng, Yajuan Cui, Qian Chen, Yansheng Ye, Yingchun Liu, Fengying Zhang, Weiyan Zeng, and Xiuying Hu
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General self-efficacy ,Perceived organizational support ,Perceived professional benefits ,Nursing practice environment ,Mediating role ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background General self-efficacy is considered one of the most influential parameters affecting the quality of clinical practice and nurses’ perceived professional benefits (NPPB). Perceived organizational support (POS) is regarded as being central in understanding job-related attitudes, and it is important to enhance POS for nurses to maintain their current employment. NPPB can further reduce nurses’ job burnout and turn-over intention. Many studies have explored the relationships among general self-efficacy, POS, nursing practice environment (NPE) and NPPB. However, a moderating effect of NPE has not been fully explored in nurses, especially among paediatric nurses. Methods A descriptive cross-sectional study was conducted from July to October 2018 with 300 paediatric nurses from 3 Class A tertiary hospitals in Jilin Province. The respondents completed the General Self-Efficacy Scale, Perceived Organizational Support Scale, Practice Environment Scale and Nurses’ Perceived Professional Benefits Scale. The data were analyzed using path analysis and SPSS (version 23.0, IBM). Results General self-efficacy and POS were significantly positively associated with NPPB, which showed that the model had a good fit to the data. NPE was found to play a partial mediating role between POS and NPPB and also had a complete mediating role between general self-efficacy and NPPB. Conclusions The results suggest that general self-efficacy indirectly influences NPPB, and POS directly and indirectly influences NPPB by NPE. Effective measures should be taken to improve nurses’ practice environment in hospitals to raise nurses’ enthusiasm and confidence in their work.
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- 2020
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32. Structure, Physicochemical Property, and Functional Activity of Dietary Fiber Obtained from Pear Fruit Pomace (Pyrus ussuriensis Maxim) via Different Extraction Methods
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Fei Peng, Xin Ren, Bin Du, Linan Chen, Zuoqing Yu, and Yuedong Yang
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Pyrus ussuriensis Maxim ,dietary fiber ,structure composition ,functional activity ,Chemical technology ,TP1-1185 - Abstract
In this study, soluble dietary fiber (SDF) and insoluble dietary fiber (IDF) were extracted from Pyrus ussuriensis Maxim pomace via three methods including enzymic extraction (EE), microwave-assisted enzymatic extraction (MEE), and three-phase partitioning (TPP). The effects of different extraction methods on the structure, physicochemical property, and functional activity of the extracted dietary fiber were evaluated. The results showed that different extraction methods had significant effects on the extraction yield, molecular weight distribution, thermal stability, antioxidant activity, and hypoglycemic activity in vitro, but resulted in no difference in the structure and composition of functional groups. It is noteworthy that SDF extracted by TPP has a more complex and porous structure, lower molecular weight, and higher thermal stability, as well as better physicochemical properties and in vitro hypoglycemic activity. IDF extracted by MEE showed the greatest water and oil holding capacity; the highest adsorption capacity for glucose, cholesterol, and nitrite ion; as well as the strongest inhibitory activity on α-amylase. These results suggest that PUP may be a source of cheap natural dietary fiber.
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- 2022
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33. Mediating effects of general self-efficacy on the relationship between the source of meaning in life and prosocial behaviours in vocational college nursing students: A cross-sectional study.
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Linan Cheng, Yansheng Ye, Zhaoyang Zhong, Fengying Zhang, Xiuying Hu, Renshan Cui, and Qian Chen
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Medicine ,Science - Abstract
ObjectivesTo examine the mediating effect of general self-efficacy on the relationship between the source of meaning in life (SML) and prosocial behaviours in vocational college nursing students.MethodsBetween March and June 2019, a cross-sectional descriptive study was conducted, and 799 nursing students from three vocational colleges completed the Source of Meaning in Life Scale, General Self-Efficacy Scale and Prosocial Behaviours Scale. Data were analyzed using structural equation modelling and statistical analysis by SPSS (version 23.0, IBM).ResultsThe average SML, general self-efficacy and prosocial behaviours scores of the 799 nursing students were 6.43±0.83, 2.48±0.59 and 3.69±0.62, respectively. Correlation analysis showed that SML, general self-efficacy and prosocial behaviours were positively correlated (PConclusionsEducators should focus on cultivating nursing students' cognition and experience of meaning in life and their efficacy in life, study and work, which can improve students' "people-oriented" service and prosocial behaviour and the quality of nursing services.
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- 2020
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34. The risk of using intrauterine devices to benign reproductive system conditions in postmenopausal women: A case control study
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Xiaohua Zhang, Liping Xiao, Haoping Zhu, and Linan Cheng
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Benign reproductive system ,contraception ,fertile window ,intrauterine devices (IUDs) ,Medicine - Abstract
Background: To investigate the effect of using intrauterine devices (IUDs) during the fertile window on women′s reproductive system health. Materials and Methods: 2,744 postmenopausal women in the Minhang District, Shanghai, China were enrolled. In the IUDs group there were 2,253 women; in the tubal ligation group there were 202 women and there were 289 women in the control group. We selected subjects according to the cases number in different hospital by using step sampling, and, in addition, collected the sociological data and information of the previously used contraceptives by the subjects, which included whether the contraceptives were used appropriately and the effect they had. Kolmogorov-Smirnov test, Levene′s test, and logistic regression analysis were used to analyze the data. Results: The prevalence rate of benign reproductive system conditions was significantly different among them (P < 0.05). Further comparison revealed, the rate in Group 1 was significantly lower than that in Group 2 and Group 3 (P < 0.05, respectively). Results of logistic regression analysis show that the risk factors for development of such conditions lie in the women′s pregnancy history [odds ratio (OR) = 3.85], reproductive history (OR = 0.5), the use of IUD in fertile window (OR = 0.4), tubal ligation (OR = 1.74), birth control time (OR = 0.9), contraceptive failure history (OR = 1.7), and history of family planning procedures (OR = 1.73). Conclusion: IUDs, maybe, can effectively reduce the risk of getting benign reproductive conditions in postmenopausal females.
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- 2016
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35. Prostaglandin inactivation is increased in endometrium after exposure to clomiphene
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Kelly, R.W., Linan, C., Thong, J., Yong, E-L., and Baird, D.T.
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- 1994
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