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Among the most intriguing mysteries in the evolutionary biology of photosynthetic organisms are the genesis and consequences of the dramatic increase in the mitochondrial and nuclear genome sizes, together with the concomitant evolution of the three genetic compartments, particularly during the transition from water to land. To clarify the evolutionary trends in the mitochondrial genome of Archaeplastida, we analyzed the sequences from 37 complete genomes. Therefore, we utilized mitochondrial, plastidial and nuclear ribosomal DNA molecular markers on 100 species of Streptophyta for each subunit. Hierarchical models of sequence evolution were fitted to test the heterogeneity in the base composition. The best resulting phylogenies were used for reconstructing the ancestral Guanine-Cytosine (GC) content and equilibrium GC frequency (GC*) using non-homogeneous and non-stationary models fitted with a maximum likelihood approach. The mitochondrial genome length was strongly related to repetitive sequences across Archaeplastida evolution; however, the length seemed not to be linked to the other studied variables, as different lineages showed diverse evolutionary patterns. In contrast, Streptophyta exhibited a powerful positive relationship between the GC content, non-coding DNA, and repetitive sequences, while the evolution of Chlorophyta reflected a strong positive linear relationship between the genome length and the number of genes.

Completely sequenced plastomes provide a valuable source of information about the duplication, loss, and transfer events of chloroplast genes and phylogenetic data for resolving relationships among major groups of plants. Moreover, they can also be useful for exploiting chloroplast genetic engineering technology. Ericales account for approximately six per cent of eudicot diversity with 11,545 species from which only three complete plastome sequences are currently available. With the aim of increasing the number of ericalean complete plastome sequences, and to open new perspectives in understanding Mediterranean plant adaptations, a genomic study on the basis of the complete chloroplast genome sequencing of Arbutus unedo and an updated phylogenomic analysis of Asteridae was implemented. The chloroplast genome of A. unedo shows extensive rearrangements but a medium size (150,897 nt) in comparison to most of angiosperms. A number of remarkable distinct features characterize the plastome of A. unedo: five-fold dismissing of the SSC region in relation to most angiosperms; complete loss or pseudogenization of a number of essential genes; duplication of the ndhH-D operon and its location within the two IRs; presence of large tandem repeats located near highly re-arranged regions and pseudogenes. All these features outline the primary evolutionary split between Ericaceae and other ericalean families. The newly sequenced plastome of A. unedo with the available asterid sequences allowed the resolution of some uncertainties in previous phylogenies of Asteridae.

Recent anthropogenic habitat perturbationsrelated to the unsustainable development of thetwo areas of distribution of Androcymbiumgramineum in Almería (South of Spain) andthe Atlantic coast of Morocco are outweighingthe intrinsic biological survival assets ofthis narrow Ibero-Moroccan endemic. We usedpopulation genetic data on 18 isozyme loci for13 populations to design a comprehensivesampling strategy for ex-situ conservation thatstraddles the results of independenttheoretical developments and the indications ofseveral genetic polymorphism parameters.Regressions based on the probabilities of lossestimate that sampling one population would beinsufficient to represent the variationattributable to the rare alleles found in thepopulations surveyed from Almería orMorocco and suggest that the relationshipbetween the number of populations sampled ineither area should conform to the proportion0.6:0.4, respectively. The estimate of thenumber of populations that need be targeted torepresent 99% of the genetic variationdetected indicates that it would be necessaryto sample eight populations intensively. Fivepopulations from Almería and three fromMorocco were selected through the ranked valuesof the average number of alleles per locus andthe expected heterozygosity on the grounds thatthese parameters provide unambiguousindications of polymorphism that, in the caseof heterozygosity, are less likely to beinfluenced by sampling error. Spatialautocorrelation surveys in the largestpopulation known indicate that seeds should becollected at a minimum separation of 15 m toavoid the sampling of close relatives. [ABSTRACT FROM AUTHOR]