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Purpose: Cover crops and reduced tillage are two key climate smart agricultural practices that can provide agroecosystem services including improved soil health, increased soil carbon sequestration, and reduced fertilizer needs. Crop residue carbon traits (i.e., lignin, holocellulose, non-structural carbohydrates) and nitrogen concentrations largely mediate decomposition rates and amount of plant-available nitrogen accessible to cash crops and determine soil carbon residence time. Non-destructive approaches to quantify these important traits are possible using spectroscopy.he objective of this study was to evaluate the efficacy of spectroscopy instruments to quantify crop residue biochemical traits in cover crop agriculture systems using partial least squares regression models and a combination of (1) the band equivalent reflectance (BER) of the PRecursore IperSpettrale della Missione Applicativa (PRISMA) imaging spectroscopy sensor derived from laboratory collected Analytical Spectral Devices (ASD) spectra (n = 296) of 11 cover crop species and three cash crop species, and (2) spaceborne PRISMA imagery that coincided with destructive crop residue collections in the spring of 2022 (n = 65). Spectral range was constrained to 1200 to 2400 nm to reduce the likelihood of confounding relationships in wavelengths sensitive to plant pigments or those related to canopy structure for both analytical approaches.Models using laboratory BER of PRISMA all demonstrated high accuracies and low errors for estimation of nitrogen and carbon traits (adj. R2 = 0.86 − 0.98; RMSE = 0.24 − 4.25%) and results indicate that a single model may be used for a given trait across all species. Models using spaceborne imaging spectroscopy demonstrated that crop residue carbon traits can be successfully estimated using PRISMA imagery (adj. R2 = 0.65 − 0.75; RMSE = 2.71 − 4.16%). We found moderate relationships between nitrogen concentration and PRISMA imagery (adj. R2 = 0.52; RMSE = 0.25%), which is partly related to the range of nitrogen in these senesced crop residues (0.38–1.85%). PRISMA imagery models were also influenced by atmospheric absorption, variability in surface moisture content, and some presence of green vegetation.As spaceborne imaging spectroscopy data become more widely available from upcoming missions, crop residue trait estimates could be regularly generated and integrated into decision support tools to calculate decomposition rates and associated nitrogen credits to inform precision field management, as well as to enable measurement, monitoring, reporting, and verification of net carbon benefits from climate smart agricultural practice adoption in an emerging carbon marketplace.Methods: Cover crops and reduced tillage are two key climate smart agricultural practices that can provide agroecosystem services including improved soil health, increased soil carbon sequestration, and reduced fertilizer needs. Crop residue carbon traits (i.e., lignin, holocellulose, non-structural carbohydrates) and nitrogen concentrations largely mediate decomposition rates and amount of plant-available nitrogen accessible to cash crops and determine soil carbon residence time. Non-destructive approaches to quantify these important traits are possible using spectroscopy.he objective of this study was to evaluate the efficacy of spectroscopy instruments to quantify crop residue biochemical traits in cover crop agriculture systems using partial least squares regression models and a combination of (1) the band equivalent reflectance (BER) of the PRecursore IperSpettrale della Missione Applicativa (PRISMA) imaging spectroscopy sensor derived from laboratory collected Analytical Spectral Devices (ASD) spectra (n = 296) of 11 cover crop species and three cash crop species, and (2) spaceborne PRISMA imagery that coincided with destructive crop residue collections in the spring of 2022 (n = 65). Spectral range was constrained to 1200 to 2400 nm to reduce the likelihood of confounding relationships in wavelengths sensitive to plant pigments or those related to canopy structure for both analytical approaches.Models using laboratory BER of PRISMA all demonstrated high accuracies and low errors for estimation of nitrogen and carbon traits (adj. R2 = 0.86 − 0.98; RMSE = 0.24 − 4.25%) and results indicate that a single model may be used for a given trait across all species. Models using spaceborne imaging spectroscopy demonstrated that crop residue carbon traits can be successfully estimated using PRISMA imagery (adj. R2 = 0.65 − 0.75; RMSE = 2.71 − 4.16%). We found moderate relationships between nitrogen concentration and PRISMA imagery (adj. R2 = 0.52; RMSE = 0.25%), which is partly related to the range of nitrogen in these senesced crop residues (0.38–1.85%). PRISMA imagery models were also influenced by atmospheric absorption, variability in surface moisture content, and some presence of green vegetation.As spaceborne imaging spectroscopy data become more widely available from upcoming missions, crop residue trait estimates could be regularly generated and integrated into decision support tools to calculate decomposition rates and associated nitrogen credits to inform precision field management, as well as to enable measurement, monitoring, reporting, and verification of net carbon benefits from climate smart agricultural practice adoption in an emerging carbon marketplace.Results: Cover crops and reduced tillage are two key climate smart agricultural practices that can provide agroecosystem services including improved soil health, increased soil carbon sequestration, and reduced fertilizer needs. Crop residue carbon traits (i.e., lignin, holocellulose, non-structural carbohydrates) and nitrogen concentrations largely mediate decomposition rates and amount of plant-available nitrogen accessible to cash crops and determine soil carbon residence time. Non-destructive approaches to quantify these important traits are possible using spectroscopy.he objective of this study was to evaluate the efficacy of spectroscopy instruments to quantify crop residue biochemical traits in cover crop agriculture systems using partial least squares regression models and a combination of (1) the band equivalent reflectance (BER) of the PRecursore IperSpettrale della Missione Applicativa (PRISMA) imaging spectroscopy sensor derived from laboratory collected Analytical Spectral Devices (ASD) spectra (n = 296) of 11 cover crop species and three cash crop species, and (2) spaceborne PRISMA imagery that coincided with destructive crop residue collections in the spring of 2022 (n = 65). Spectral range was constrained to 1200 to 2400 nm to reduce the likelihood of confounding relationships in wavelengths sensitive to plant pigments or those related to canopy structure for both analytical approaches.Models using laboratory BER of PRISMA all demonstrated high accuracies and low errors for estimation of nitrogen and carbon traits (adj. R2 = 0.86 − 0.98; RMSE = 0.24 − 4.25%) and results indicate that a single model may be used for a given trait across all species. Models using spaceborne imaging spectroscopy demonstrated that crop residue carbon traits can be successfully estimated using PRISMA imagery (adj. R2 = 0.65 − 0.75; RMSE = 2.71 − 4.16%). We found moderate relationships between nitrogen concentration and PRISMA imagery (adj. R2 = 0.52; RMSE = 0.25%), which is partly related to the range of nitrogen in these senesced crop residues (0.38–1.85%). PRISMA imagery models were also influenced by atmospheric absorption, variability in surface moisture content, and some presence of green vegetation.As spaceborne imaging spectroscopy data become more widely available from upcoming missions, crop residue trait estimates could be regularly generated and integrated into decision support tools to calculate decomposition rates and associated nitrogen credits to inform precision field management, as well as to enable measurement, monitoring, reporting, and verification of net carbon benefits from climate smart agricultural practice adoption in an emerging carbon marketplace.Conclusion: Cover crops and reduced tillage are two key climate smart agricultural practices that can provide agroecosystem services including improved soil health, increased soil carbon sequestration, and reduced fertilizer needs. Crop residue carbon traits (i.e., lignin, holocellulose, non-structural carbohydrates) and nitrogen concentrations largely mediate decomposition rates and amount of plant-available nitrogen accessible to cash crops and determine soil carbon residence time. Non-destructive approaches to quantify these important traits are possible using spectroscopy.he objective of this study was to evaluate the efficacy of spectroscopy instruments to quantify crop residue biochemical traits in cover crop agriculture systems using partial least squares regression models and a combination of (1) the band equivalent reflectance (BER) of the PRecursore IperSpettrale della Missione Applicativa (PRISMA) imaging spectroscopy sensor derived from laboratory collected Analytical Spectral Devices (ASD) spectra (n = 296) of 11 cover crop species and three cash crop species, and (2) spaceborne PRISMA imagery that coincided with destructive crop residue collections in the spring of 2022 (n = 65). Spectral range was constrained to 1200 to 2400 nm to reduce the likelihood of confounding relationships in wavelengths sensitive to plant pigments or those related to canopy structure for both analytical approaches.Models using laboratory BER of PRISMA all demonstrated high accuracies and low errors for estimation of nitrogen and carbon traits (adj. R2 = 0.86 − 0.98; RMSE = 0.24 − 4.25%) and results indicate that a single model may be used for a given trait across all species. Models using spaceborne imaging spectroscopy demonstrated that crop residue carbon traits can be successfully estimated using PRISMA imagery (adj. R2 = 0.65 − 0.75; RMSE = 2.71 − 4.16%). We found moderate relationships between nitrogen concentration and PRISMA imagery (adj. R2 = 0.52; RMSE = 0.25%), which is partly related to the range of nitrogen in these senesced crop residues (0.38–1.85%). PRISMA imagery models were also influenced by atmospheric absorption, variability in surface moisture content, and some presence of green vegetation.As spaceborne imaging spectroscopy data become more widely available from upcoming missions, crop residue trait estimates could be regularly generated and integrated into decision support tools to calculate decomposition rates and associated nitrogen credits to inform precision field management, as well as to enable measurement, monitoring, reporting, and verification of net carbon benefits from climate smart agricultural practice adoption in an emerging carbon marketplace. [ABSTRACT FROM AUTHOR]

The magnitude of ecosystem services provided by winter cover crops is linked to their performance (i.e., biomass and associated nitrogen content, forage quality, and fractional ground cover), although few studies quantify these characteristics across the landscape. Remote sensing can produce landscape-level assessments of cover crop performance. However, commonly employed optical vegetation indices (VI) saturate, limiting their ability to measure high-biomass cover crops. Contemporary VIs that employ red-edge bands have been shown to be more robust to saturation issues. Additionally, synthetic aperture radar (SAR) data have been effective at estimating crop biophysical characteristics, although this has not been demonstrated on winter cover crops. We assessed the integration of optical (Sentinel-2) and SAR (Sentinel-1) imagery to estimate winter cover crops biomass across 27 fields over three winter–spring seasons (2018–2021) in Maryland. We used log-linear models to predict cover crop biomass as a function of 27 VIs and eight SAR metrics. Our results suggest that the integration of the normalized difference red-edge vegetation index (NDVI_RE1; employing Sentinel-2 bands 5 and 8A), combined with SAR interferometric (InSAR) coherence, best estimated the biomass of cereal grass cover crops. However, these results were season- and species-specific (R2 = 0.74, 0.81, and 0.34; RMSE = 1227, 793, and 776 kg ha−1, for wheat (Triticum aestivum L.), triticale (Triticale hexaploide L.), and cereal rye (Secale cereale), respectively, in spring (March–May)). Compared to the optical-only model, InSAR coherence improved biomass estimations by 4% in wheat, 5% in triticale, and by 11% in cereal rye. Both optical-only and optical-SAR biomass prediction models exhibited saturation occurring at ~1900 kg ha−1; thus, more work is needed to enable accurate biomass estimations past the point of saturation. To address this continued concern, future work could consider the use of weather and climate variables, machine learning models, the integration of proximal sensing and satellite observations, and/or the integration of process-based crop-soil simulation models and remote sensing observations. [ABSTRACT FROM AUTHOR]

Shrub proliferation across the Arctic from climate warming is expanding herbivore habitat but may also alter forage quality. Dietary fibers—an important component of forage quality—influence shrub palatability, and changes in dietary fiber concentrations may have broad ecological implications. While airborne hyperspectral instruments may effectively estimate dietary fibers, such data captures a limited portion of landscapes. Satellite data such as the multispectral WorldView-3 (WV-3) instrument may enable dietary fiber estimation to be extrapolated across larger areas. We assessed how variation in dietary fibers of Salix alaxensis (Andersson), a palatable northern shrub, could be estimated using hyperspectral and multispectral WV-3 spectral vegetation indices (SVIs) in a greenhouse setting, and whether including structural information (i.e., leaf area) would improve predictions. We collected canopy-level hyperspectral reflectance readings, which we convolved to the band equivalent reflectance of WV-3. We calculated every possible SVI combination using hyperspectral and convolved WV-3 bands. We identified the best performing SVIs for both sensors using the coefficient of determination (adjusted R2) and the root mean square error (RMSE) using simple linear regression. Next, we assessed the importance of plant structure by adding shade leaf area, sun leaf area, and total leaf area to models individually. We evaluated model fits using Akaike's information criterion for small sample sizes and conducted leave-one-out cross validation. We compared cross validation slopes and predictive power (Spearman rank coefficients ρ) between models. Hyperspectral SVIs (R2 = 0.48–0.68; RMSE = 0.04–0.91%) outperformed WV-3 SVIs (R2 = 0.13–0.35; RMSE = 0.05–1.18%) for estimating dietary fibers, suggesting hyperspectral remote sensing is best suited for estimating dietary fibers in a palatable northern shrub. Three dietary fibers showed improved predictive power when leaf area metrics were included (cross validation ρ = +2–8%), suggesting plant structure and the light environment may augment our ability to estimate some dietary fibers in northern landscapes. Monitoring dietary fibers in northern ecosystems may benefit from upcoming hyperspectral satellites such as the environmental mapping and analysis program (EnMAP). [ABSTRACT FROM AUTHOR]

A general limitation in assessing the accuracy of land cover mapping is the availability of ground truth data. At sites where ground truth is not available, potentially inaccurate proxy datasets are used for sub-field-scale resolution investigations at large spatial scales, i.e., in the Contiguous United States. The USDA/NASS Cropland Data Layer (CDL) is a popular agricultural land cover dataset due to its high accuracy (>80%), resolution (30 m), and inclusions of many land cover and crop types. However, because the CDL is derived from satellite imagery and has resulting uncertainties, comparisons to available in situ data are necessary for verifying classification performance. This study compares the cropland mapping accuracies (crop/non-crop) of an optical approach (CDL) and the radar-based crop area (CA) approach used for the upcoming NASA-ISRO Synthetic Aperture Radar (NISAR) L- and S-band mission but using Sentinel-1 C-band data. CDL and CA performance are compared to ground truth data that includes 54 agricultural production and research fields located at USDA's Beltsville Agricultural Research Center (BARC) in Maryland, USA. We also evaluate non-crop mapping accuracy using twenty-six built-up and thirteen forest sites at BARC. The results show that the CDL and CA have a good pixel-wise agreement with one another (87%). However, the CA is notably more accurate compared to ground truth data than the CDL. The 2017–2021 mean accuracies for the CDL and CA, respectively, are 77% and 96% for crop, 100% and 94% for built-up, and 100% and 100% for forest, yielding an overall accuracy of 86% for the CDL and 96% for CA. This difference mainly stems from the CDL under-detecting crop cover at BARC, especially in 2017 and 2018. We also note that annual accuracy levels varied less for the CA (91–98%) than for the CDL (79–93%). This study demonstrates that a computationally inexpensive radar-based cropland mapping approach can also give accurate results over complex landscapes with accuracies similar to or better than optical approaches. [ABSTRACT FROM AUTHOR]

Potassium (K) plays a significant role in the formation of crop quality and yield. Accurate estimation of plant potassium content using remote sensing (RS) techniques is therefore of great interest to better manage crop K nutrition. To improve RS of crop K, meteorological information might prove useful, as it is well established that weather conditions affect crop K uptake. We aimed to determine whether including meteorological data into RS-based models can improve K estimation accuracy in rice (Oryza sativa L.). We conducted field experiments throughout three growing seasons (2017–2019). During each year, different treatments (i.e., nitrogen, potassium levels and plant varieties) were applied and spectra were taken at different growth stages throughout the growing season. Firstly, we conducted a correlation analysis between rice plant potassium content and transformed spectra (reflectance spectra (R), first derivative spectra (FD) and reciprocal logarithm-transformed spectra (log [1/R])) to select correlation bands. Then, we performed the genetic algorithms partial least-squares and linear mixed effects model to select important bands (IBs) and important meteorological factors (IFs) from correlation bands and meteorological data (daily average temperature, humidity, etc.), respectively. Finally, we used the spectral index and machine learning methods (partial least-squares regression (PLSR) and random forest (RF)) to construct rice plant potassium content estimation models based on transformed spectra, transformed spectra + IFs and IBs, and IBs + IFs, respectively. Results showed that normalized difference spectral index (NDSI (R1210, R1105)) had a moderate estimation accuracy for rice plant potassium content (R2 = 0.51; RMSE = 0.49%) and PLSR (FD-IBs) (R2 = 0.69; RMSE = 0.37%) and RF (FD-IBs) (R2 = 0.71; RMSE = 0.40%) models based on FD could improve the prediction accuracy. Among the meteorological factors, daily average temperature contributed the most to estimating rice plant potassium content, followed by daily average humidity. The estimation accuracy of the optimal rice plant potassium content models was improved by adding meteorological factors into the three RS models, with model R2 increasing to 0.65, 0.74, and 0.76, and RMSEs decreasing to 0.42%, 0.35%, and 0.37%, respectively, suggesting that including meteorological data can improve our ability to remotely sense plant potassium content in rice. [ABSTRACT FROM AUTHOR]

Relationships between gross primary productivity (GPP) and the remotely sensed photochemical reflectance index (PRI) suggest that time series of foliar PRI may provide insight into climate change effects on carbon cycling. However, because a large fraction of carbon assimilated via GPP is quickly returned to the atmosphere via respiration, we ask a critical question—can PRI time series provide information about longer term gains in aboveground carbon stocks? Here we study the suitability of PRI time series to understand intra‐annual stem‐growth dynamics at one of the world's largest terrestrial carbon pools—the boreal forest. We hypothesized that PRI time series can be used to determine the onset (hypothesis 1) and cessation (hypothesis 2) of radial growth and enable tracking of intra‐annual tree growth dynamics (hypothesis 3). Tree‐level measurements were collected in 2018 and 2019 to link highly temporally resolved PRI observations unambiguously with information on daily radial tree growth collected via point dendrometers. We show that the seasonal onset of photosynthetic activity as determined by PRI time series was significantly earlier (p <.05) than the onset of radial tree growth determined from the point dendrometer time series which does not support our first hypothesis. In contrast, seasonal decline of photosynthetic activity and cessation of radial tree growth was not significantly different (p >.05) when derived from PRI and dendrometer time series, respectively, supporting our second hypothesis. Mixed‐effects modeling results supported our third hypothesis by showing that the PRI was a statistically significant (p <.0001) predictor of intra‐annual radial tree growth dynamics, and tracked these daily radial tree‐growth dynamics in remarkable detail with conditional and marginal coefficients of determination of 0.48 and 0.96 (for 2018) and 0.43 and 0.98 (for 2019), respectively. Our findings suggest that PRI could provide novel insights into nuances of carbon cycling dynamics by alleviating important uncertainties associated with intra‐annual vegetation response to climate change. [ABSTRACT FROM AUTHOR]

Recent advancements in understanding remotely sensed solar‐induced chlorophyll fluorescence often suggest a linear relationship with gross primary productivity at large spatial scales. However, the quantum yields of fluorescence and photochemistry are not linearly related, and this relationship is largely driven by irradiance. This raises questions about the mechanistic basis of observed linearity from complex canopies that experience heterogeneous irradiance regimes at subcanopy scales. We present empirical data from two evergreen forest sites that demonstrate a nonlinear relationship between needle‐scale observations of steady‐state fluorescence yield and photochemical yield under ambient irradiance. We show that accounting for subcanopy and diurnal patterns of irradiance can help identify the physiological constraints on needle‐scale fluorescence at 70–80% accuracy. Our findings are placed in the context of how solar‐induced chlorophyll fluorescence observations from spaceborne sensors relate to diurnal variation in canopy‐scale physiology. Plain Language Summary: Chlorophyll fluorescence is a faint signal emitted by plants that can provide information about photosynthesis and other processes important for plant growth. However, fluorescence is governed by complex chemical reactions that depend on light, and it is not linearly related to photosynthetic carbon uptake. Ecosystems with complex canopy structure, such as evergreen needleleaf forests, experience dynamic sunlit and shaded conditions, which make fluorescence observations challenging to interpret. However, by accounting for incoming light at fine spatial scales in studies using fluorescence, we can track the conditions under which canopies are partitioned by light‐saturated and light‐limited physiological constraints at 70–80% accuracy. Findings from our field‐based study are relevant for interpreting satellite‐based measurements of fluorescence as a proxy of photosynthetic carbon uptake. Furthermore, our study underscores the need for further research on how data from leaf‐scale studies can be scaled up to shed light on ecosystem responses to changing climatic conditions. Key Points: Needle‐scale observations from forests show a nonlinear, irradiance‐dependent relationship between fluorescence and photosystem II yieldsWe use the breakpoint in this relationship to distinguish physiological constraints on photosystem II operating efficiencyWe use this relationship to contextualize the apparent linear relationship between fluorescence and carbon uptake at the canopy scale [ABSTRACT FROM AUTHOR]

Abstract Digital terrain models (DTMs) and vegetation canopy height models (CHMs) are used in a wide range of earth and environmental sciences. An increasing number of CHM products are available from active, passive, and photogrammetric remotely sensed data; however, high-resolution (≤5 m), wall-to-wall CHMs for the arctic and northern boreal domains that are suitable for detailed spatial analysis are lacking. Recently, a 5-m spatial resolution pan-arctic digital surface model – the ArcticDEM – was created using automated stereopair analysis of high-resolution satellite data. The ArcticDEM is unprecedented in extent and spatial resolution, yet the product generally follows the uppermost surface elevation (i.e., representing a digital surface model, DSM) without regard to whether the surface is comprised of vegetation or bare-earth terrain. To address this limitation, we developed and tested an approach to map vegetation canopy height at a 5-m spatial resolution (hereafter called the local ArcticCHM), and then subtracted these estimated canopy heights from the ArcticDEM in order to create a 5-m resolution DTM (local ArcticDTM). We selected three pilot study areas (total 58 km2) across a north-south gradient in Alaska, representing a range of vegetation types and topographic conditions. We estimated and mapped canopy height using randomForest and imputation modeling approaches, with the ArcticDEM and high spatial resolution multispectral satellite data (WorldView-2) used as predictors. Airborne laser scanning (ALS) data was used for model calibration and independent validation. Canopy height was reliably predicted across the three study areas, with the best models ranging from root mean square errors (RMSE) 2.2 to 2.6 m and R2 ranging from 0.59 to 0.76 relative to ALS-based CHM reference data. Similarly, the RMSE between the new local ArcticDTM product and ALS-based DTM reference data was 45–68% less than similar comparisons with the ArcticDEM. Our results offer a means to extend these local ArcticDTM and CHM products to establish high-resolution products elsewhere in Alaska of high value for a wide range of earth and environmental sciences research investigations. Graphical abstract Unlabelled Image Highlights • The ArcticDEM is a high-resolution digital surface model for northern latitudes. • The ArcticDEM generally follows the highest local surface, vegetation or terrain. • We developed methods that accurately quantify canopy height. • We used the canopy height to remove vegetation elevations from the ArcticDEM. • Our approach is portable to similar areas where lidar data is not available. [ABSTRACT FROM AUTHOR]