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Subduction and exhumation are key processes in the formation of orogenic systems across the world, for example, in the European Alps. For geophysical investigations of these orogens, it is essential to understand the petrophysical properties of the rocks involved. These are the result of a complex interaction of mineral composition and rock fabric including mineral textures (i.e., crystallographic preferred orientations). In this study we present texture-derived elastic anisotropy data for a representative set of different lithologies involved in the Alpine orogeny. Rock samples were collected in the Lago di Cignana area in Valtournenche, in the Italian northwestern Alps. At this locality a wide range of units of continental and oceanic origin with varying paleogeographic affiliations and tectono-metamorphic histories are accessible. Their mineral textures were determined by time-of-flight neutron diffraction. From these data the elastic properties of the samples were calculated. The data set includes representative lithologies from a subduction-exhumation setting. In subducted lithologies originating from the oceanic crust, the P-wave anisotropies (AVPs [%]) range from 1.4 % to 3.7 % with average P-wave velocities of 7.20–8.24 km/s and VP / VS ratios of 1.70–1.75. In the metasediments of the former accretionary prism the AVPs range from 3.7 % to 7.1 %, average P-wave velocities are 6.66–7.23 km/s and VP / VS ratios are 1.61–1.76. Continental crust which is incorporated in the collisional orogen shows AVP ranging from 1.4 % to 2.1 % with average P-wave velocities of 6.52–6.62 km/s and VP / VS ratios of 1.56–1.60. Our results suggest that mafic and felsic rocks in subduction zones at depth may be discriminated by a combination of seismic signatures: lower anisotropy and higher VP / VS ratio for mafic rocks, and higher anisotropy and lower VP / VS ratio for felsic rocks and metasediments.

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Since the 1980s, pertussis notifications in the United States have been increasing. To determine the types of Bordetella pertussis responsible for these increases, we divided 661 B. pertussis isolates collected in the United States during 1935–2009 into 8 periods related to the introduction of novel vaccines or changes in vaccination schedule. B. pertussis diversity was highest from 1970–1990 (94%) but declined to ≈70% after 1991 and has remained constant. During 2006–2009, 81.6% of the strains encoded multilocus sequence type prn2-ptxP3-ptxS1A-fim3B, and 64% were multilocus variable number tandem repeat analysis type 27. US trends were consistent with those seen internationally; emergence and predominance of the fim3B allele was the only molecular characteristic associated with the increase in pertussis notifications. Changes in the vaccine composition and schedule were not the direct selection pressures that resulted in the allele changes present in the current B. pertussis population.

The objective of this study was to develop a canonical, parsimoniously-informative SNP panel for subtyping Shiga-toxin producing Escherichia coli (STEC) O157:H7 that would be consistent with epidemiological, PFGE, and MLVA clustering of human specimens. Our group had previously identified 906 putative discriminatory SNPs, which were pared down to 391 SNPs based on their prevalence in a test set. The 391 SNPs were screened using a high-throughput form of TaqMan PCR against a set of clinical isolates that represent the most diverse collection of O157:H7 isolates from outbreaks and sporadic cases examined to date. Another 30 SNPs identified by others were also screened using the same method. Two additional targets were tested using standard TaqMan PCR endpoint analysis. These 423 SNPs were reduced to a 32 SNP panel with the almost the same discriminatory value. While the panel partitioned our diverse set of isolates in a manner that was consistent with epidemiological data and PFGE and MLVA phylogenies, it resulted in fewer subtypes than either existing method and insufficient epidemiological resolution in 10 of 47 clusters. Therefore, another round of SNP discovery was undertaken using comparative genomic resequencing of pooled DNA from the 10 clusters with insufficient resolution. This process identified 4,040 potential SNPs and suggested one of the ten clusters was incorrectly grouped. After its removal, there were 2,878 SNPs, of which only 63 were previously identified and 438 occurred across multiple clusters. Among highly clonal bacteria like STEC O157:H7, linkage disequilibrium greatly limits the number of parsimoniously informative SNPs. Therefore, it is perhaps unsurprising that our panel accounted for the potential discriminatory value of numerous other SNPs reported in the literature. We concluded published O157:H7 SNPs are insufficient for effective epidemiological subtyping. However, the 438 multi-cluster SNPs we identified may provide the additional information required.

Copyright of Journal of the American Institute for Conservation is the property of Taylor & Francis Ltd and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

• Comparison of the photodegradation of three organic red dyes in solutions. • Red 40 is most stable in pure water and carminic acid in the soft drink matrix. • Both Red 40 and carminic acid showed some stabilization by anoxia. • Betanin was the most fleeting color and was not stabilized by anoxia. • Kinetics and spectral changes are used to propose degradation mechanisms. The shift from artificial to natural ingredients is a rising trend in the food industry. However, natural coloring agents tend to be less stable than their synthetic counterparts when exposed to light, air, changes in pH, and heat. This study compares the photostability of three organic red dyes, Red 40 (allura red AC), betanin and carminic acid, in aqueous and soft drink solutions. The degradation, traced through absorbance spectroscopy, is well fit to first-order kinetics. Two distinct timescales are observed in aqueous solution but only a single, faster decay in the soft drink matrix. Betanin is the least stable dye in both solvent environments and Red 40 exhibits the greatest destabilization in the soft drink solution. Anoxia has different impacts dependent upon both the dye and solvent system. The analysis provides further insight into the degradation mechanisms for these different red dyes and the role of environment on their photostability. [ABSTRACT FROM AUTHOR]