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1,467 results on '"Hunter, A. E."'

2. DNA-based studies and genetic diversity indicator assessments are complementary approaches to conserving evolutionary potential

Author

Hoban, Sean, Paz-Vinas, Ivan, Shaw, Robyn E., Castillo-Reina, Luis, da Silva, Jessica M., DeWoody, J. Andrew, Ekblom, Robert, Fedorca, Ancuta, Forester, Brenna R., Funk, W. Chris, Geue, Julia C., Heuertz, Myriam, Hollingsworth, Peter M., Hughes, Alice C., Hunter, Margaret E., Hvilsom, Christina, Ishihama, Fumiko, Jordan, Rebecca, Kalamujić Stroil, Belma, Kershaw, Francine, Khoury, Colin K., Köppä, Viktoria, Laikre, Linda, Macdonald, Anna J., Mastretta-Yanes, Alicia, Meek, Mariah H., Mergeay, Joachim, Millette, Katie L., O’Brien, David, Rincón-Parra, Victor J., Rodríguez-Morales, M. Alejandra, Schuman, Meredith C., Segelbacher, Gernot, Sunnucks, Paul, Taylor, Rebecca S., Thurfjell, Henrik, Vernesi, Cristiano, and Grueber, Catherine E.

Published
2024
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4. An open source knowledge graph ecosystem for the life sciences

Author

Callahan, Tiffany J., Tripodi, Ignacio J., Stefanski, Adrianne L., Cappelletti, Luca, Taneja, Sanya B., Wyrwa, Jordan M., Casiraghi, Elena, Matentzoglu, Nicolas A., Reese, Justin, Silverstein, Jonathan C., Hoyt, Charles Tapley, Boyce, Richard D., Malec, Scott A., Unni, Deepak R., Joachimiak, Marcin P., Robinson, Peter N., Mungall, Christopher J., Cavalleri, Emanuele, Fontana, Tommaso, Valentini, Giorgio, Mesiti, Marco, Gillenwater, Lucas A., Santangelo, Brook, Vasilevsky, Nicole A., Hoehndorf, Robert, Bennett, Tellen D., Ryan, Patrick B., Hripcsak, George, Kahn, Michael G., Bada, Michael, Baumgartner, Jr, William A., and Hunter, Lawrence E.

Published
2024
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5. Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

Author

Pardo-Palacios, Francisco J., Wang, Dingjie, Reese, Fairlie, Diekhans, Mark, Carbonell-Sala, Sílvia, Williams, Brian, Loveland, Jane E., De María, Maite, Adams, Matthew S., Balderrama-Gutierrez, Gabriela, Behera, Amit K., Gonzalez Martinez, Jose M., Hunt, Toby, Lagarde, Julien, Liang, Cindy E., Li, Haoran, Meade, Marcus Jerryd, Moraga Amador, David A., Prjibelski, Andrey D., Birol, Inanc, Bostan, Hamed, Brooks, Ashley M., Çelik, Muhammed Hasan, Chen, Ying, Du, Mei R. M., Felton, Colette, Göke, Jonathan, Hafezqorani, Saber, Herwig, Ralf, Kawaji, Hideya, Lee, Joseph, Li, Jian-Liang, Lienhard, Matthias, Mikheenko, Alla, Mulligan, Dennis, Nip, Ka Ming, Pertea, Mihaela, Ritchie, Matthew E., Sim, Andre D., Tang, Alison D., Wan, Yuk Kei, Wang, Changqing, Wong, Brandon Y., Yang, Chen, Barnes, If, Berry, Andrew E., Capella-Gutierrez, Salvador, Cousineau, Alyssa, Dhillon, Namrita, Fernandez-Gonzalez, Jose M., Ferrández-Peral, Luis, Garcia-Reyero, Natàlia, Götz, Stefan, Hernández-Ferrer, Carles, Kondratova, Liudmyla, Liu, Tianyuan, Martinez-Martin, Alessandra, Menor, Carlos, Mestre-Tomás, Jorge, Mudge, Jonathan M., Panayotova, Nedka G., Paniagua, Alejandro, Repchevsky, Dmitry, Ren, Xingjie, Rouchka, Eric, Saint-John, Brandon, Sapena, Enrique, Sheynkman, Leon, Smith, Melissa Laird, Suner, Marie-Marthe, Takahashi, Hazuki, Youngworth, Ingrid A., Carninci, Piero, Denslow, Nancy D., Guigó, Roderic, Hunter, Margaret E., Maehr, Rene, Shen, Yin, Tilgner, Hagen U., Wold, Barbara J., Vollmers, Christopher, Frankish, Adam, Au, Kin Fai, Sheynkman, Gloria M., Mortazavi, Ali, Conesa, Ana, and Brooks, Angela N.

Published
2024
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7. I Will Survive: Teachers Reflect on Motivations to Remain in Education amidst a Global Pandemic

Author

Wright, Diane S., Weinberg, Andrea E., Sample McMeeking, Laura B., Lin Hunter, Danielle E., and Balgopal, Meena M.

Abstract

As the pandemic began to disrupt school systems in March 2020, teachers were expected to quickly modify their instructional approaches. We recruited science, technology, engineering, and mathematics teachers who were recipients of National Science Foundation scholarships based on their high-quality academic record and commitment to working in high-needs school districts to participate in a longitudinal survey study. Participants (n = 153) graduated from universities or colleges in the Mountain West or western region of the Midwest. Through a series of three surveys administered throughout 2020 to all participants and follow-up focus group interviews with a subset (n = 42) in early 2021, we examined participants' perceptions and beliefs about the educational system's response to COVID-19. Participants perceived that the continuation of instructional delivery was the highest priority and that their professional needs were the lowest priority. Most participants believed the actions taken by school districts and schools to be negative or neutral. Participants were categorized by years of experience (preservice 0, novice 1-3, early career 4-5, and master 6+) to compare their perceptions of success and intentions to continue teaching. Participants perceived that their level of success increased with years of professional experience prior to the pandemic, but all participants reported feeling less successful during the pandemic. Despite participants' negative beliefs about the school response and perceived low levels of success, they intended to remain in the classroom short-term but not necessarily long term. We recommend that teacher educators and administrators (1) help teachers develop their personal knowledge and skills for use in the classroom, especially considering the national shortage of science (and STEM, broadly) teachers in high-needs districts and (2) develop proactive plans for responding to unexpected crises on large scales, as well as those limited to a particular region.

Published
2023
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9. A survey of experts to identify methods to detect problematic studies: stage 1 of the INveStigating ProblEmatic Clinical Trials in Systematic Reviews project

Author

Wilkinson, Jack, Heal, Calvin, Antoniou, George A., Flemyng, Ella, Avenell, Alison, Barbour, Virginia, Bordewijk, Esmee M., Brown, Nicholas J.L., Clarke, Mike, Dumville, Jo, Grohmann, Steph, Gurrin, Lyle C., Hayden, Jill A., Hunter, Kylie E., Lam, Emily, Lasserson, Toby, Li, Tianjing, Lensen, Sarah, Liu, Jianping, Lundh, Andreas, Meyerowitz-Katz, Gideon, Mol, Ben W., O'Connell, Neil E., Parker, Lisa, Redman, Barbara, Seidler, Anna Lene, Sheldrick, Kyle, Sydenham, Emma, Dahly, Darren L., van Wely, Madelon, Bero, Lisa, and Kirkham, Jamie J.

Published
2024
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10. In vitro impacts of glyphosate on manatee lymphocytes

Author

De Maria, Maite, Garcia-Reyero, Natalia, Stacy, Nicole I., Abbott, Jeffrey R., Yu, Fahong, Pu, Ruyiu, Kroll, Kevin J., Barboza, Francisco R., Walsh, Michael T., Perez-Jimenez, Juan G., Amador, David A. Moraga, Hunter, Margaret E., and Denslow, Nancy D.

Published
2024
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11. Computing linear optical spectra in the presence of nonadiabatic effects on graphics processing units using molecular dynamics and tensor-network approaches.

Author

Lambertson, Evan, Bashirova, Dayana, Hunter, Kye E., Hansen, Benhardt, and Zuehlsdorff, Tim J.

Subjects
OPTICAL computing, QUANTUM theory, GRAPHICS processing units, OPTICAL spectra, VIBRONIC coupling
Abstract

We compare two recently developed strategies, implemented in open source software packages, for computing linear optical spectra in condensed phase environments in the presence of nonadiabatic effects. Both approaches rely on computing excitation energy and transition dipole fluctuations along molecular dynamics (MD) trajectories, treating molecular and environmental degrees of freedom on the same footing. Spectra are then generated in two ways: in the recently developed Gaussian non-Condon theory, the linear response functions are computed in terms of independent adiabatic excited states, with non-Condon effects described through spectral densities of transition dipole fluctuations. For strongly coupled excited states, we instead parameterize a linear vibronic coupling Hamiltonian directly from spectral densities of energy fluctuations and diabatic couplings computed along the MD trajectory. The optical spectrum is then calculated using powerful, numerically exact tensor-network approaches. Both the electronic structure calculations to sample system fluctuations and the quantum dynamics simulations using tensor-network methods are carried out on graphics processing units, enabling rapid calculations on complex condensed phase systems. We assess the performance of the approaches using model systems in the presence of a conical intersection and the pyrazine molecule in different solvent environments. [ABSTRACT FROM AUTHOR]

Published
2024
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19. Plasma proteome of growing tumors

Author

Gupta, Shashi, Westacott, Matthew J., Ayers, Deborah G., Weiss, Sophie J., Whitley, Penn, Mueller, Christopher, Weaver, Daniel C., Schneider, Daniel J., Karimpour-Fard, Anis, Hunter, Lawrence E., Drolet, Daniel W., and Janjic, Nebojsa

Published
2023
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20. Ontologizing health systems data at scale: making translational discovery a reality

Author

Callahan, Tiffany J., Stefanski, Adrianne L., Wyrwa, Jordan M., Zeng, Chenjie, Ostropolets, Anna, Banda, Juan M., Baumgartner, Jr., William A., Boyce, Richard D., Casiraghi, Elena, Coleman, Ben D., Collins, Janine H., Deakyne Davies, Sara J., Feinstein, James A., Lin, Asiyah Y., Martin, Blake, Matentzoglu, Nicolas A., Meeker, Daniella, Reese, Justin, Sinclair, Jessica, Taneja, Sanya B., Trinkley, Katy E., Vasilevsky, Nicole A., Williams, Andrew E., Zhang, Xingmin A., Denny, Joshua C., Ryan, Patrick B., Hripcsak, George, Bennett, Tellen D., Haendel, Melissa A., Robinson, Peter N., Hunter, Lawrence E., and Kahn, Michael G.

Published
2023
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22. Collateral Child and Parent Effects of Function-Based Behavioral Interventions for Sleep Problems in Children and Adolescents with Autism

Author

McLay, Laurie L., France, Karyn G., Blampied, Neville M., Hunter, Jolene E., van Deurs, Jenna R., Woodford, Emma C., Gibbs, Rosina, and Lang, Russell

Abstract

This study follows McLay et al., "Journal of Autism and Developmental Disorders," (2020) to investigate whether the function-based behavioral sleep interventions received by 41 children and adolescents with autism spectrum disorder (ASD) produced collateral improvements in ASD severity, internalizing and externalizing symptoms and parent relationship quality, ratings of depression, anxiety and stress, and personal sleep quality. Concomitant with reduced sleep problem severity, improvements were found in children's internalizing and externalizing behavior and ASD symptom severity. Small improvements were also found in maternal sleep quality and parental stress. There was little change in parental relationship quality post-treatment, possibly reflecting high baseline scores. Overall, collateral benefits were generally small but positive, consistent with the limited extant research, and underscore the importance of investigating collateral effects across a range of variables. [For McLay et al.'s article, "Function-Based Behavioral Interventions for Sleep Problems in Children and Adolescents with Autism: Summary of 41 Clinical Cases," see EJ1284101.]

Published
2022
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23. Short, medium, and long deferral of umbilical cord clamping compared with umbilical cord milking and immediate clamping at preterm birth: a systematic review and network meta-analysis with individual participant data

Author

Seidler, Anna Lene, Libesman, Sol, Hunter, Kylie E, Barba, Angie, Aberoumand, Mason, Williams, Jonathan G, Shrestha, Nipun, Aagerup, Jannik, Sotiropoulos, James X, Montgomery, Alan A, Gyte, Gillian M L, Tarnow-Mordi, William O, El-Naggar, Walid, Carlo, Waldemar A, Datta, Vikram, Lago, Victor, Sundaram, Venkataseshan, Manoj, Varanattu C, Debray, Thomas P A, Sahoo, Tanushree, Trongkamonthum, Tanai, Hooper, Stuart B, Dias, Sofia, Pratesi, Simone, Badurdeen, Shiraz, Hosono, Shigeharu, Belk, Sheila S, Shekhar, Shashank, Chamnanvanakij, Sangkae, Arsan, Saadet, Knol, Ronny, Simes, Robert John, Riley, Richard D, Pongmee, Pharuhad, Davis, Peter G, Andersson, Ola, Dipak, Niraj K, Nasef, Nehad, Allam, Nahed E, Mangla, Mukul K, Meyer, Michael P, March, Melissa I, Kluckow, Martin, Goya, Maria, de Veciana, Margarita, Gharehbaghi, Manizheh M, Robledo, Kristy P, Murphy, Kellie E, Wallace, Kedra, Fairchild, Karen D, Josephsen, Justin B, Mercer, Judith S, Dorling, Jon S, Kattwinkel, John, Liu, Jiang-Qin, Nour, Islam, Atia, Hytham, Liley, Helen G, Rabe, Heike, Al-Wassia, Heidi K, Carroli, Guillermo, Polglase, Graeme R, Ram Mohan, Govindu, Dempsey, Eugene M, Okulu, Emel, Blank, Douglas A, Chawla, Deepak, Ruangkit, Chayatat, Tanprasertkul, Chamnan, De Paco Matallana, Catalina, Backes, Carl H, Schwaberger, Bernhard, Urlesberger, Berndt, KC, Ashish, te Pas, Arjan B, Katheria, Anup C, Thukral, Anu, George, Anu A, Webster, Angela C, Kugelman, Amir, Tan, Aidan C, Kumar, Aditi, Garg, Aashim, Duley, Lelia, and Askie, Lisa M

Published
2023
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24. Deferred cord clamping, cord milking, and immediate cord clamping at preterm birth: a systematic review and individual participant data meta-analysis

Author

Seidler, Anna Lene, Aberoumand, Mason, Hunter, Kylie E, Barba, Angie, Libesman, Sol, Williams, Jonathan G, Shrestha, Nipun, Aagerup, Jannik, Sotiropoulos, James X, Montgomery, Alan A, Gyte, Gillian M L, Garg, Aashim, Kumar, Aditi, Tan, Aidan C, Kugelman, Amir, Webster, Angela C, George, Anu A, Thukral, Anu, Katheria, Anup C, te Pas, Arjan B, KC, Ashish, Urlesberger, Berndt, Schwaberger, Bernhard, Backes, Carl H, De Paco Matallana, Catalina, Tanprasertkul, Chamnan, Ruangkit, Chayatat, Chawla, Deepak, Blank, Douglas A, Okulu, Emel, Dempsey, Eugene M, Ram Mohan, Govindu, Polglase, Graeme R, Carroli, Guillermo, Al-Wassia, Heidi K, Rabe, Heike, Liley, Helen G, Atia, Hytham, Nour, Islam, Liu, Jiang-Qin, Kattwinkel, John, Dorling, Jon S, Mercer, Judith S, Josephsen, Justin B, Fairchild, Karen D, Wallace, Kedra, Murphy, Kellie E, Robledo, Kristy P, Gharehbaghi, Manizheh M, de Veciana, Margarita, Goya, Maria, Kluckow, Martin, March, Melissa I, Meyer, Michael P, Mangla, Mukul K, Allam, Nahed E, Nasef, Nehad, Dipak, Niraj K, Andersson, Ola, Davis, Peter G, Pongmee, Pharuhad, Riley, Richard D, Simes, Robert John, Knol, Ronny, Arsan, Saadet, Shekhar, Shashank, Belk, Sheila S, Hosono, Shigeharu, Badurdeen, Shiraz, Pratesi, Simone, Dias, Sofia, Hooper, Stuart B, Sahoo, Tanushree, Debray, Thomas P A, Manoj, Varanattu C, Sundaram, Venkataseshan, Lago, Victor, Datta, Vikram, El-Naggar, Walid, Carlo, Waldemar A, Tarnow-Mordi, William O, Duley, Lelia, and Askie, Lisa M

Published
2023
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26. Genetic diversity goals and targets have improved, but remain insufficient for clear implementation of the post-2020 global biodiversity framework

Author

Hoban, Sean, Bruford, Michael W., da Silva, Jessica M., Funk, W. Chris, Frankham, Richard, Gill, Michael J., Grueber, Catherine E., Heuertz, Myriam, Hunter, Margaret E., Kershaw, Francine, Lacy, Robert C., Lees, Caroline, Lopes-Fernandes, Margarida, MacDonald, Anna J., Mastretta-Yanes, Alicia, McGowan, Philip J. K., Meek, Mariah H., Mergeay, Joachim, Millette, Katie L., Mittan-Moreau, Cinnamon S., Navarro, Laetitia M., O’Brien, David, Ogden, Rob, Segelbacher, Gernot, Paz-Vinas, Ivan, Vernesi, Cristiano, and Laikre, Linda

Published
2023
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28. Podocyte protease activated receptor 1 stimulation in mice produces focal segmental glomerulosclerosis mirroring human disease signaling events

Author

May, Carl J., Chesor, Musleeha, Hunter, Sarah E., Hayes, Bryony, Barr, Rachel, Roberts, Tim, Barrington, Fern A., Farmer, Louise, Ni, Lan, Jackson, Maisie, Snethen, Heidi, Tavakolidakhrabadi, Nadia, Goldstone, Max, Gilbert, Rodney, Beesley, Matt, Lennon, Rachel, Foster, Rebecca, Coward, Richard, Welsh, Gavin I., and Saleem, Moin A.

Published
2023
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40. Global Commitments to Conserving and Monitoring Genetic Diversity Are Now Necessary and Feasible

Author

HOBAN, SEAN, BRUFORD, MICHAEL W., FUNK, W. CHRIS, GALBUSERA, PETER, GRIFFITH, M. PATRICK, GRUEBER, CATHERINE E., HEUERTZ, MYRIAM, HUNTER, MARGARET E., HVILSOM, CHRISTINA, STROIL, BELMA KALAMUJIC, KERSHAW, FRANCINE, KHOURY, COLIN K., LAIKRE, LINDA, LOPES-FERNANDES, MARGARIDA, MACDONALD, ANNA J., MERGEAY, JOACHIM, MEEK, MARIAH, MITTAN, CINNAMON, MUKASSABI, TAREK A., O’BRIEN, DAVID, OGDEN, ROB, PALMA-SILVA, CLARISSE, RAMAKRISHNAN, UMA, SEGELBACHER, GERNOT, SHAW, ROBYN E., SJÖGREN-GULVE, PER, VELIČKOVIĆ, NEVENA, and VERNESI, CRISTIANO

Published
2021

42. Beyond the Condon limit: Condensed phase optical spectra from atomistic simulations.

Author

Wiethorn, Zachary R., Hunter, Kye E., Zuehlsdorff, Tim J., and Montoya-Castillo, Andrés

Subjects
*CONDENSED matter, *OPTICAL spectra, *BAND gaps, *SPECTRAL energy distribution, *PHENOXIDES
Abstract

While dark transitions made bright by molecular motions determine the optoelectronic properties of many materials, simulating such non-Condon effects in condensed phase spectroscopy remains a fundamental challenge. We derive a Gaussian theory to predict and analyze condensed phase optical spectra beyond the Condon limit. Our theory introduces novel quantities that encode how nuclear motions modulate the energy gap and transition dipole of electronic transitions in the form of spectral densities. By formulating the theory through a statistical framework of thermal averages and fluctuations, we circumvent the limitations of widely used microscopically harmonic theories, allowing us to tackle systems with generally anharmonic atomistic interactions and non-Condon fluctuations of arbitrary strength. We show how to calculate these spectral densities using first-principles simulations, capturing realistic molecular interactions and incorporating finite-temperature, disorder, and dynamical effects. Our theory accurately predicts the spectra of systems known to exhibit strong non-Condon effects (phenolate in various solvents) and reveals distinct mechanisms for electronic peak splitting: timescale separation of modes that tune non-Condon effects and spectral interference from correlated energy gap and transition dipole fluctuations. We further introduce analysis tools to identify how intramolecular vibrations, solute–solvent interactions, and environmental polarization effects impact dark transitions. Moreover, we prove an upper bound on the strength of cross correlated energy gap and transition dipole fluctuations, thereby elucidating a simple condition that a system must follow for our theory to accurately predict its spectrum. [ABSTRACT FROM AUTHOR]

Published
2023
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43. Interlaboratory performance and quantitative PCR data acceptance metrics for NIST SRM® 2917

Author

Sivaganesan, Mano, Willis, Jessica R., Karim, Mohammad, Babatola, Akin, Catoe, David, Boehm, Alexandria B., Wilder, Maxwell, Green, Hyatt, Lobos, Aldo, Harwood, Valerie J., Hertel, Stephanie, Klepikow, Regina, Howard, Mondraya F., Laksanalamai, Pongpan, Roundtree, Alexis, Mattioli, Mia, Eytcheson, Stephanie, Molina, Marirosa, Lane, Molly, Rediske, Richard, Ronan, Amanda, D'Souza, Nishita, Rose, Joan B., Shrestha, Abhilasha, Hoar, Catherine, Silverman, Andrea I., Faulkner, Wyatt, Wickman, Kathleen, Kralj, Jason G., Servetas, Stephanie L., Hunter, Monique E., Jackson, Scott A., and Shanks, Orin C.

Published
2022
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49. Primary radiotherapy and deep inferior epigastric perforator flap reconstruction for patients with breast cancer (PRADA): a multicentre, prospective, non-randomised, feasibility study

Author

Thiruchelvam, Paul TR, Leff, Daniel R, Godden, Amy R, Cleator, Susan, Wood, Simon H, Kirby, Anna M, Somaiah, Navita, Patani, Neill, Gujral, Dorothy, Ross, Gillian, James, Stuart, Khan, Aadil, Rusby, Jennifer E, Hadjiminas, Dimitri, MacNeill, Fiona A, Thiruchelvam, Paul T R, Jallali, Navid, Hunter, Judith E, Henry, Francis P, Micha, Aikaterini, O'Connell, Rachel L, Mohammed, Kabir, Tan, Melissa L H, James, Stuart E, Khan, Aadil A, and Hadjiminas, Dimitri J

Published
2022
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50. Evaluating quality, understandability, and actionability of YouTube content for gender-affirming surgery.

Author

Hunter, Alexandra E., Otto-Moudry, Reade A., Yusuf, Cynthia T., Malik, Rena D., and Moses, Rachel A.

Abstract

0INTRODUCTION: The purpose of this study is to evaluate YouTube content about metoidioplasty on completeness of perioperative information, actionability, understandability, degree of misinformation, quality, and presence of commercial bias. METHODS: A YouTube search for "Metoidioplasty" was conducted and the first 100 video results were watched by five independent reviewers. Videos in English, <30 minutes in length were included and videos primarily showing surgical footage were excluded. Videos were evaluated between January 2022 and June 2022. Each video was evaluated for presenter demographics, channel/video statistics, and whether it covered topics including anatomy, treatment options, outcomes, procedure risks, and misinformation, and whether it had a clickbait title. Calculated scores for validated DISCERN and patient education materials assessment tool (PEMAT) metrics were the primary outcome variables used to quantify quality, actionability, and understandability. For PEMAT, a cutoff of 75% was used to differentiate between "poor" vs. "good/sufficient." Multivariate and univariate logistic regressions were performed to assess correlations among primary outcome variables and other variables. RESULTS: Of the 79 videos analyzed, 24% (n=19) were of high quality; 99% (n=78) had poor understandability and 100% (n=79%) had poor actionability. Patients/consumers were the most common publisher type (n=71, 90%). CONCLUSIONS: This study demonstrates metoidioplasty content available on YouTube is not comprehensive and is of poor quality, and poor actionability and understandability, demonstrating a clear need for more relevant, accessible, comprehensible, and accurate content. [ABSTRACT FROM AUTHOR]

Published
2025
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