1. 基于生物信息学的锌指蛋白 492 基因突变对卵巢癌转录组的影响 及价值.
- Author
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陆媛媛 and 李力
- Abstract
Objective: To investigate the mechanism and clinical value of zinc finger protein 492 (ZNF492) gene mutation in ovarian cancer, and to provide a theoretical basis for the diagnosis and treatment of ovarian cancer. Methods: The transcriptome data of ZNF492 mutant samples were downloaded by TCGA, and the samples were divided into two groups: ZNF492 mutant and non-mutant groups. The R package DESeq2 was used to analyze the differential genes between the two groups. The differentially expressed genes were analyzed by kyoto encyclopedia of genes and genomes (KEGG) pathway enrichment analysis and gene set enrichment analysis (GSEA). The age, tumor stage and differentiation of ovarian cancer patients were obtained, and the Nomogram model was constructed and evaluated by multivariate COX regression prediction model of ZNF492 expression and clinical characteristics of ovarian cancer patients. Results: There were 100 up -regulated genes and 971 down-regulated genes in the differential genes between the ZNF492 mutant group (n=377) and the non-mutant group (n=2). The pathway enrichment analysis of differential genes between the two groups and 100 up-regulated genes in the ZNF492 mutant group showed that they were enriched transforming growth factor -β (TGF -β) signal path. The results of multivariate COX regression prediction model showed that higher age (≥65 years old), the higher tumor stage (Ⅲ-Ⅳ stage) and differentiation (G3) might be related to the poor overall survival (HR>1), while high expression of ZNF492 (≥0.672) was related to the better prognosis (HR<1), among which the higher age patients (≥65 years old) had a poor prognosis (P<0.01). Based on the above four factors, further construct the Nomogram prediction model. The model validation results showed that the C index was 0.593, the area under the curve (AUC) (0.610 and 0.566) of three-year and five-year ROC curves, and the clinical decision curve analysis (DCA) suggested that patients can take bold measures when the 3-year or 5-year survival rate was greater than 18% and less than 82% . Conclusions: Mutated ZNF492 may affect the occurrence and development of ovarian cancer by regulating TGF -β pathway and anti -apoptosis potential mechanism, and has strong clinical practical value in predicting prognosis. ZNF492 mutation is expected to be a marker of circulating tumour DNA and therapeutic target for ovarian cancer. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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