22 results on '"Gazzarata, Roberta"'
Search Results
2. Transforming Ontology Web Language Elements into Common Terminology Service 2 Terminology Resources.
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Mora, Sara, Gazzarata, Roberta, Blobel, Bernd, Murgia, Ylenia, and Giacomini, Mauro
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ALZHEIMER'S disease , *INFORMATION & communication technologies , *TIME management , *INFORMATION sharing , *ONTOLOGY - Abstract
Communication and cooperation are fundamental for the correct deployment of P5 medicine, and this can be achieved only by correct comprehension of semantics so that it can aspire to medical knowledge sharing. There is a hierarchy in the operations that need to be performed to achieve this goal that brings to the forefront the complete understanding of the real-world business system by domain experts using Domain Ontologies, and only in the last instance acknowledges the specific transformation at the pure information and communication technology level. A specific feature that should be maintained during such types of transformations is versioning that aims to record the evolution of meanings in time as well as the management of their historical evolution. The main tool used to represent ontology in computing environments is the Ontology Web Language (OWL), but it was not created for managing the evolution of meanings in time. Therefore, we tried, in this paper, to find a way to use the specific features of Common Terminology Service—Release 2 (CTS2) to perform consistent and validated transformations of ontologies written in OWL. The specific use case managed in the paper is the Alzheimer's Disease Ontology (ADO). We were able to consider all of the elements of ADO and map them with CTS2 terminological resources, except for a subset of elements such as the equivalent class derived from restrictions on other classes. [ABSTRACT FROM AUTHOR]
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- 2024
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3. Childhood Cancer Survivorship Passport Challenges in the European Health Data Space.
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GAZZARATA, Roberta, STRÜBIN, Michael, CHRONAKI, Catherine, CANGIOLI, Giorgio, SARACENO, Davide, SCHREIER, Günter, BEYER, Stefan, TRAUNER, Florian, GREDINGER, Gerald, LADENSTEIN, Ruth, de BEIJER, Ismay AE, CAVALCA, Giacomo, TRINKUNAS, Justas, BELTRAN, Lucas CERVERO, VANAUTGAERDEN, Mark, KOCK-SCHOPPENHAUER, Ann-Kristin, NEUMANN, Anke, MURACA, Monica, FILBERT, Anna-Liesa, and HAUPT, Riccardo
- Abstract
Innovation in cancer therapy has increased childhood cancer survival rates. However, survivors are still at risk of developing late effects. In the digital transformation of the health sector, the Survivorship Passport (SurPass) can support long-term follow-up care plans. Gaps in seamless connectivity among hospital departments, primary care, combined with the time of health professionals required to collect and fill-in health data in SurPass, are barriers to its adoption in daily clinical practice. The PanCareSurPass (PCSP) project was motivated to address these gaps by a new version of SurPass (v2.0) that supports semi-automatic assembly from organizational Electronic Health Record (EHR) systems of the treatment summary data using HL7 FHIR, to create SurPass, and to link it to regional or national digital health infrastructures in six European countries. In this paper we present the methodology used to develop the SurPass technical implementation strategy with special focus on the European Health Data Space (EHDS). The recently provisionally approved EHDS regulation instruments a digital health data ecosystem with opportunities for cost-effective SurPass implementation across Europe. Moving forward, a European HL7 FHIR SurPass Implementation Guide along with synthetic data sets, and validation tools can enrich the European Electronic Health Record Exchange Format (EEHRxF) with use cases on health & wellness of childhood cancer survivors. [ABSTRACT FROM AUTHOR]
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- 2024
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4. Automated extraction of standardized antibiotic resistance and prescription data from laboratory information systems and electronic health records: a narrative review.
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Cappello, Alice, Murgia, Ylenia, Giacobbe, Daniele Roberto, Mora, Sara, Gazzarata, Roberta, Rosso, Nicola, Giacomini, Mauro, and Bassetti, Matteo
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- 2024
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5. A Standardized SOA Based Solution to Guarantee the Secure Access to EHR
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Gazzarata, Giorgia, Gazzarata, Roberta, and Giacomini, Mauro
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- 2015
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6. Design and Adoption of a FHIR IG to Support a Telemonitoring Environment in Gatekeeper Project.
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GAZZARATA, Roberta, CHRONAKI, Catherine, RICCIARDI, Francesco, GIULIANI, Francesco, ZAMPOGNARO, Paolo, MERCALLI, Franco, ALLOCCA, Carlo, GAETA, Eugenio, FICO, Giuseppe, and CANGIOLI, Giorgio
- Abstract
Telemedicine can provide benefits in patient affected by chronic diseases or elderly citizens as part of standard routine care supported by digital health. The GATEKEEPER (GK) Project was financed to create a vendor independent platform to be adopted in medical practice and to demonstrate its effect, benefit value, and scalability in 8 connected medical use cases with some independent pilots. This paper, after a description of the GK platform architecture, is focused on the creation of a FHIR (Fast Healthcare Interoperability Resource) IG (Implementation Guide) and its adoption in specific use cases. The final aim is to combine conventional data, collected in the hospital, with unconventional data, coming from wearable devices, to exploit artificial intelligence (AI) models designed to evaluate the effectiveness of a new parsimonious risk prediction model for Type 2 diabetes (T2D). [ABSTRACT FROM AUTHOR]
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- 2023
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7. Experience from the Development of HL7 FHIR IG for Gatekeeper Project.
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GAZZARATA, Roberta, CHRONAKI, Catherine, GALLEGO, Alba, GAETA, Eugenio, FICO, Giuseppe, ZAMPOGNARO, Paolo, MERCALLI, Franco, GIULIANI, Francesco, ALLOCCA, Carlo, and CANGIOLI, Giorgio
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The GATEKEEPER (GK) Project was financed by the European Commission to develop a platform and marketplace to share and match ideas, technologies, user needs and processes to ensure a healthier independent life for the aging population connecting all the actors involved in the care circle. In this paper, the GK platform architecture is presented focusing on the role of HL7 FHIR to provide a shared logical data model to be explored in heterogeneous daily living environments. GK pilots are used to illustrate the impact of the approach, benefit value, and scalability, suggesting ways to further accelerate progress. [ABSTRACT FROM AUTHOR]
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- 2023
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8. Standardization Proposal for the Transmission of Waiting List Data in Italy.
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MURGIA, Ylenia, BONETTO, Monica, GAZZARATA, Roberta, BROGONZOLI, Luisa, IARDINO, Rosaria, VENTURI, Alessandro, and GIACOMINI, Mauro
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Each Italian region is required to manage and disclose data relating to waiting times for healthcare services which are provided by both public and private hospitals and local health units accredited to the Sistema Sanitario Nazionale (SSN -- in English, National Healthcare System). The current law governing data relating to waiting times and their sharing is the Piano Nazionale di Governo delle Liste di Attesa (PNGLA -- in English National Government Plan for Waiting Lists). However, this plan does not propose a standard to monitor such data, but only provides a few guidelines that the Italian regions are required to follow. The lack of a specific technical standard for managing sharing of waiting list data and the lack of precise and binding information in the PNGLA make the management and transmission of such data problematic, reducing the interoperability necessary to have an effective and efficient monitoring of the phenomenon. The proposal for a new standard for the transmission of waiting list data derives from these shortcomings. This proposed standard promotes greater interoperability, is easy to create with an implementation guide, and has sufficient degrees of freedom to assist the document author. [ABSTRACT FROM AUTHOR]
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- 2023
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9. CTS2 OWL: Mapping OWL Ontologies to CTS2 Terminology Resources.
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MORA, Sara, BLOBEL, Bernd, GAZZARATA, Roberta, and GIACOMINI, Mauro
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The advancement of healthcare towards P5 medicine requires communication and cooperation between all actors and institutions involved. Interoperability must go beyond integrating data from different sources and include the understanding of the meaning of the data in the context of concepts and contexts they represent for a specific use case. In other words, we have to advance from data sharing through sharing semantics up to sharing clinical and medical knowledge. According to the Good Modeling Best Practices, we have to start with describing the real-world business system by domain experts using Domain Ontologies before transforming it into an information and communication technology (ICT) system, thereafter specifying the informational components and then transforming the system into an implementable solution. Any representation style – in the system development process acc. to ISO 10746 called system view – is defined by a related ontology, to be distinguished from real-world domain ontologies representing the knowledge spaces of involved disciplines. The system enabling such representational transformation shall also support versioning as well as the management of historical evolutions. One of such systems is the Common Terminology Service Release 2 (CTS2), which is a standard that allows the complete management of terminological contents. The main objective of this work is to present the choices we made to transform an ontology, written in the standard Ontology Web Language (OWL), into the CTS2 objects. We tested our transformation approach with the Alzheimer’s Disease Ontology. We managed to map all the elements of the considered ontology to CTS2 terminological resources, except for a subset of elements such as the equivalent Class derived from restrictions on other classes. [ABSTRACT FROM AUTHOR]
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- 2022
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10. A NLP Pipeline for the Automatic Extraction of a Complete Microorganism's Picture from Microbiological Notes.
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Mora, Sara, Attene, Jacopo, Gazzarata, Roberta, Giacobbe, Daniele Roberto, Blobel, Bernd, Parruti, Giustino, and Giacomini, Mauro
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MICROBIAL cultures ,NOSOCOMIAL infections ,DATA mining ,MICROORGANISMS ,NATURAL language processing - Abstract
The Italian "Istituto Superiore di Sanità" (ISS) identifies hospital-acquired infections (HAIs) as the most frequent and serious complications in healthcare. HAIs constitute a real health emergency and, therefore, require decisive action from both local and national health organizations. Information about the causative microorganisms of HAIs is obtained from the results of microbiological cultures of specimens collected from infected body sites, but microorganisms' names are sometimes reported only in the notes field of the culture reports. The objective of our work was to build a NLP-based pipeline for the automatic information extraction from the notes of microbiological culture reports. We analyzed a sample composed of 499 texts of notes extracted from 1 month of anonymized laboratory referral. First, our system filtered texts in order to remove nonmeaningful sentences. Thereafter, it correctly extracted all the microorganisms' names according to the expert's labels and linked them to a set of very important metadata such as the translations into national/international vocabularies and standard definitions. As the major result of our pipeline, the system extracts a complete picture of the microorganism. [ABSTRACT FROM AUTHOR]
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- 2022
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11. Semantics Management for a Regional Health Information System in Italy by CTS2 and FHIR.
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GAZZARATA, Roberta, MAGGI, Norbert, MAGNONI, Luca Douglas, MONTEVERDE, Maria Eugenia, RUGGIERO, Carmelina, and GIACOMINI, Mauro
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An infrastructure for the management of semantics is being developed to support the regional health information exchange in Veneto - an Italian region which has about 5 million inhabitants. Terminology plays a key role in the management of the information fluxes of the Veneto region, in which the management of electronic health record is given great attention. An architecture for the management of the semantics of laboratory reports has been set up, adopting standards by HL7. The system has been initially developed according to the common terminology service release 2 (CTS2) standard and, in order to overcome complexities of CTS2 is being revised according to the Fast Healthcare Interoperability Resources (FHIR) standard, which has been subsequently introduced. Aspects of CST2 and of FHIR have been considered in order to retain most suitable aspects of both. This integration can be regarded as most worthwhile. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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12. A NLP Pipeline for the Automatic Extraction of Microorganisms Names from Microbiological Notes.
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MORA, Sara, ATTENE, Jacopo, GAZZARATA, Roberta, PARRUTI, Giustino, and GIACOMINI, Mauro
- Abstract
According to the "Istituto Superiore di Sanita'" (ISS), hospital infections are the most frequent and serious complication of health care. This constitutes a real health emergency which requires incisive and joint action at all levels of the local and national health organization. Most of the valuable information related to the presence of a specific microorganism in the blood are written into the notes field of the laboratory exams results. The main objective of this work is to build a Natural Language Processing (NLP) pipeline for the automatic extraction of the names of microorganisms present in the clinical texts. A sample of 499 microbiological notes have been analysed with the developed system and all the microorganisms names have been extracted correctly, according to the labels given by the expert. [ABSTRACT FROM AUTHOR]
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- 2021
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13. The Role of HL7 FHIR in the European Project GATEKEEPER.
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GAZZARATA, Roberta, CHRONAKI, Catherine, GALLEGO, Alba, GAETA, Eugenio, FICO, Giuseppe, ZAMPOGNARO, Paolo, MERCALLI, Franco, GIULIANI, Francesco, ALLOCCA, Carlo, and CANGIOLI, Giorgio
- Abstract
The European Project GATEKEEPER aims to develop a platform and marketplace to ensure a healthier independent life for the aging population. In this platform the role of HL7 FHIR is to provide a shared logical data model to collect data in heterogeneous living, which can be used by AI Service and the Gatekeeper HL7 FHIR Implementation Guide was created for this purpose. Independent pilots used this IG and illustrate the impact of the approach, benefit, value, and scalability. [ABSTRACT FROM AUTHOR]
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- 2023
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14. Information Technology System Including Patient Generated Health Data for Cancer Clinical Care and Research.
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MAGGI, Norbert, DOUGLAS MAGNONI, Luca, RUGGIERO, Carmelina, GAZZARATA, Roberta, and GIACOMINI, Mauro
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This paper presents the extension of a service-oriented architecture framework for precision oncology to the management of patient generated health data from wearables. The solution follows the indication provided by the Health Level 7 (HL7) and Object Management Group (OMG) initiative Healthcare Service Specification Project (HSSP) and is compliant to Retrieve Locate and Update Service (RLUS) Release 1 standard adopting Clinical Document Architecture Release 2 (CDA R2) as semantic signifier. The system which has been developed supports the management of visits, the setting up of a clinical diary and a comprehensive view of the patients from the wearables data for improve clinical care and for research. The system structure is highly modular and the parameters relating to wearables data are only present in one module. Extension of the systems to other aspects, such as genomics and immune therapy, are planned following the same modular design criteria. [ABSTRACT FROM AUTHOR]
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- 2019
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15. A SOA Based Solution for MDRO Surveillance and Improved Antibiotic Prescription in the Abruzzo Region.
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GAZZARATA, Roberta, MONTEVERDE, Maria Eugenia, BONETTO, Monica, SAVINI, Vincenzo, POLILLI, Ennio, CORRIDONI, Serena, COSTANTINI, Alberto, SANTOLERI, Fiorenzo, RAPACCHIALE, Giorgia, PALMIERI, Dalia, MELENA, Stefania, DI GIROLAMO, Arturo, SCIACCA, Antonina, DE BENEDICTIS, Marco, D'ALBERTO, Heber, GALLEANI, Giacomo, GIACOMINI, Mauro, and PARRUTI, Giustino
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Prevention and control of hospital and community acquired infections caused by multi drug resistant organisms (MDROs) are one major priority nowadays for health care systems worldwide. To improve actions and plans to tackle this problem, the creation of automated regional, national and international MDRO surveillance networks is a mandatory path for international health Institutions and Ministries. In this paper, the authors report on the surveillance system designed for the Abruzzo Region (Central Italy) to monitor the prevalence of MDROs in both infected and colonized patients, to verify appropriateness of antibiotic prescription in hospitalized patients and to interact with other national and sovra-national networks. Service Oriented Architecture (SOA) approach, different Healthcare Service Specification Project (HSSP) standards, local, national and international terminology and Clinical Document Architecture Release 2 (CDA R2) were adopted to design the overall architecture of this regional surveillance system. The Authors discuss the state of implementation of the project, itemizing specific design and implementation choices adopted so far and sketching next steps and reasons of some design and implementation choices, and indicate the next steps. [ABSTRACT FROM AUTHOR]
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- 2019
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16. A SOA-Based Solution to Monitor Vaccination Coverage Among HIV-Infected Patients in Liguria.
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GIANNINI, Barbara, GAZZARATA, Roberta, STICCHI, Laura, and GIACOMINI, Mauro
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Vaccination in HIV-infected patients constitutes an essential tool in the prevention of the most common infectious diseases. The Ligurian Vaccination in HIV Program is a proposed vaccination schedule specifically dedicated to this risk group. Selective strategies are proposed within this program, employing ICT (Information and Communication) tools to identify this susceptible target group, to monitor immunization coverage over time and to manage failures and defaulting. The proposal is to connect an immunization registry system to an existing regional platform that allows clinical data re-use among several medical structures, to completely manage the vaccination process. This architecture will adopt a Service Oriented Architecture (SOA) approach and standard HSSP (Health Services Specification Program) interfaces to support interoperability. According to the presented solution, vaccination administration information retrieved from the immunization registry will be structured according to the specifications within the immunization section of the HL7 (Health Level 7) CCD (Continuity of Care Document) document. Immunization coverage will be evaluated through the continuous monitoring of serology and antibody titers gathered from the hospital LIS (Laboratory Information System) structured into a HL7 Version 3 (v3) Clinical Document Architecture Release 2 (CDA R2). [ABSTRACT FROM AUTHOR]
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- 2016
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17. IANUA: a regional project for the determination of costs in HIV-infected patients.
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Giannini, Barbara, Gazzarata, Roberta, Orcamo, Patrizia, Merlano, Caterina, Cenderello, Giovanni, Venturini, Alberto, Di Biagio, Antonio, Mazzarello, Giovanni, Montefiori, Marcello, Ameri, Marta, Setti, Maurizio, Viscoli, Claudio, Cassola, Giovanni, and Giacomini, Mauro
- Abstract
HIV treatment is based on combined antiretroviral therapy (cART) which has substantially improved survival, thus resulting in an increase in patient life expectancy as well as in the cost of HIV-related medical care. Therefore, several cost effectiveness studies were implemented worldwide, with one specifically in the Liguria region (Italy), to compare the annual economic expense in this area for HIV services, and the related improvement in patients' health. The IANUA project is intended to implement both cost-effectiveness and cost-utility analysis, therefore data related to clinical indicators and perceived health status were collected, the latter using a questionnaire based on the EQ-5D-3L. Information about the antiretroviral drugs and the relative quantity that a patient withdraws from the hospital pharmacy every month were extracted from the regional "F-file". All data gathered were stored in the Ligurian HIV Network, a web platform developed by the DIBRIS - Medinfo laboratory. More than eight hundred questionnaires were collected, and data will be elaborated by economists and psychologists. The first statistical elaborations showed that, as expected, costs increased as the number of therapeutic lines increased. Moreover, the average annual costs for patients whose last CD4 values were below 200 cells/mmc corresponded to the maximum expense recorded, however, the cost for patients with final CD4 counts above 500 cells/mmc was not, as expected, the lowest found. This can be explained by the fact that stabilized patients, who had CD4 values below 500 cells/mmc, did not need very expensive care, while patients with CD4 counts above 500 cells/mmc improved their health status thanks to cART. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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18. A Standardized SOA for Clinical Data Interchange in a Cardiac Telemonitoring Environment.
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Gazzarata, Roberta, Vergari, Fabio, Cinotti, Tullio Salmon, and Giacomini, Mauro
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ELECTRONIC data interchange ,ELECTRONIC health records ,CARDIAC patients ,MEDICAL care research ,TELEMEDICINE - Abstract
Care of chronic cardiac patients requires information interchange between patients’ homes, clinical environments, and the electronic health record. Standards are emerging to support clinical information collection, exchange and management and to overcome information fragmentation and actors delocalization. Heterogeneity of information sources at patients’ homes calls for open solutions to collect and accommodate multidomain information, including environmental data. Based on the experience gained in a European Research Program, this paper presents an integrated and open approach for clinical data interchange in cardiac telemonitoring applications. This interchange is supported by the use of standards following the indications provided by the national authorities of the countries involved. Taking into account the requirements provided by the medical staff involved in the project, the authors designed and implemented a prototypal middleware, based on a service-oriented architecture approach, to give a structured and robust tool to congestive heart failure patients for their personalized telemonitoring. The middleware is represented by a health record management service, whose interface is compliant to the healthcare services specification project Retrieve, Locate and Update Service standard (Level 0), which allows communication between the agents involved through the exchange of Clinical Document Architecture Release 2 documents. Three performance tests were carried out and showed that the prototype completely fulfilled all requirements indicated by the medical staff; however, certain aspects, such as authentication, security and scalability, should be deeply analyzed within a future engineering phase. [ABSTRACT FROM PUBLISHER]
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- 2014
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19. A standardized middleware as the core of a telemonitoring European project.
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Vergari, Fabio, Gazzarata, Roberta, Morandi, Francesco, Parodi, Viola, Naso, Simone, Arezza, Alessandra, Salmon Cinotti, Tulio, and Giacomini, Mauro
- Published
- 2012
20. A Standardized Middleware as the core of a Telemonitoring European Project.
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Mantas, John, Andersen, Stig Kjær, Mazzoleni, Maria Christina, Blobel, Bernd, Quaglini, Silvana, Moen, Anne, Vergari, Fabio, Gazzarata, Roberta, Morandi, Francesco, Parodi, Viola, Naso, Simone, Arezza, Alessandra, Salmon Cinotti, Tulio, and Giacomini, Mauro
- Abstract
In order to develop smart and innovative solutions which are able to realize the concept of care continuum, the use of a number of different multiple devices, based on heterogeneous technologies, is necessary. In this complex context it is important to study and design systems whose architecture ensure the interoperability between devices and service. A standardized middleware which is able to guarantee this important requirement within the European Project CHIRON, is presented in this article. [ABSTRACT FROM AUTHOR]
- Published
- 2012
21. The Ligurian HIV Network: How Medical Informatics Standards Can Help Clinical Research.
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Giannini, Barbara, Mora, Sara, Gazzarata, Roberta, Biagio, Antonio Di, Cenderello, Giovanni, Dentone, Chiara, Setti, Maurizio, Fenoglio, Daniela, Cassola, Giovanni, Viscoli, Claudio, and Giacomini, Mauro
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HIV ,MEDICAL informatics ,CLINICAL trials ,ELECTRONIC data processing ,MEDICAL care - Abstract
Integrating evidence from systematic research in daily clinical practice is one of the pillars of evidence-based medicine. Electronic data capture tools simplify data collection from different centers and supports the management of multicenter clinical trials. The Ligurian HIV Network (LHN) is one such tool, originating from a regional effort to integrate clinical trial capabilities for HIV and other chronic infectious diseases. In order to manually collect a complete report of all clinical tests on patients enrolled in a trial, a strenuous human effort and the allocation of great resources would be necessary. Moreover, the risk of error in a manual system is very high. The proposed system automatically extracts clinical data from the EHR of three hospitals of the LHN in a standardized way, and enhance their re-use in clinical trials. Through dedicated questionnaires, physicians reported a strongly positive feedback about the efficacy of the platform in supporting clinical research. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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22. Healthcare Associated Infections: An Interoperable Infrastructure for Multidrug Resistant Organism Surveillance.
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Gazzarata, Roberta, Monteverde, Maria Eugenia, Ruggiero, Carmelina, Maggi, Norbert, Palmieri, Dalia, Parruti, Giustino, and Giacomini, Mauro
- Published
- 2020
- Full Text
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