37 results on '"D. X. Liu"'
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2. Observation of a thermally enhanced magnetoresistance in NiFe
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Y. Cao, C. Feng, D. X. Liu, L. J. Wang, G. Yang, J. Y. Zhang, B. Zhao, S. L. Jiang, Q. Q. Liu, K. Yang, A. B. Zelalem, and G. H. Yu
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Physics ,QC1-999 - Abstract
A thermally enhanced magnetoresistance (ThMR) was designed and obtained by simultaneously applying charge and heat currents to a NiFe thin film. From the measurement we observed that the magnetoresistance value was as high as -22600% when the input charge current and applied temperature gradient was 0.966 μA and 2.5 °C/mm, respectively. This ThMR can be controllable by adjusting the relative values of the input charge and heat currents. On increasing the input charge current from 0.85 to 1.05 μA by fixing the temperature gradient at 2.5 °C/mm, the ThMR first increased from 9% to 183% and then decreased from -259% to -13%, at intervals of ∼0.96 μA. This can be explained by the spin-dependent transport phenomenon i.e., scattering induced sign difference between magnetoresistance and magnetothermopower in NiFe.
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- 2016
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3. Microstructures, Properties and Strengthening Mechanisms of Titanium Matrix Composites Reinforced by In Situ Synthesized TiC and Unreacted Carbon Nanotubes
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D. X. Liu
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Materials science ,chemistry.chemical_element ,Titanium alloy ,Spark plasma sintering ,Carbon nanotube ,Condensed Matter Physics ,Microstructure ,Indentation hardness ,law.invention ,Compressive strength ,chemistry ,law ,Materials Chemistry ,Composite material ,Carbon ,Strengthening mechanisms of materials - Abstract
Carbon nanotubes (CNTs) are regarded as an excellent reinforcement for reinforcing metal matrix composites. However, they are extremely difficult to disperse since nano-scaled CNTs have large specific surface area, generally leading to agglomeration due to the large van der Waals attractive forces. In this study, CNTs as carbon sources were added into Ti6Al4V matrix, a dry jar-milling process without milling balls was performed to greatly reduce the structural damage of CNTs and simultaneously meet the requirements of dispersion homogeneity. In situ synthesized TiC and unreacted CNTs reinforced Ti6Al4V matrix composites (TMCs) were successfully prepared by the fast manufacturing process via spark plasma sintering. The microstructures and mechanical properties including microhardness, compressive yield strength, ultimate compressive strength and plastic strain of the Ti6Al4V alloy and the TMCs prepared by different CNTs content were studied to evaluate the strengthening effects of the reinforcements on Ti6Al4V matrix.
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- 2021
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4. Polyamines Conjugated to Embryo Tonoplast Enhance the Tolerance of Maize to Drought Stress by Maintaining the Vacuole Conformation
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H. Y. Du, D. X. Liu, H. P. Liu, R. Kurtenbach, J. M. Yu, and G. T. Liu
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0106 biological sciences ,0301 basic medicine ,Drought stress ,Chemistry ,fungi ,food and beverages ,Plant physiology ,Embryo ,Plant Science ,Vacuole ,Conjugated system ,01 natural sciences ,Zea mays ,03 medical and health sciences ,Horticulture ,030104 developmental biology ,Dry weight ,Cultivar ,010606 plant biology & botany - Abstract
The contents of conjugated covalently polyamines (CC-PAs) and conjugated non-covalently polyamines (CNC-PAs) in embryo tonoplast, and the vacuole conformation were investigated using the embryos of developing maize (Zea mays L.) grains of two cultivars differing in drought-tolerance as experiment materials. The results indicated that after drought stress treatment for seven days, relative water content of embryo (RWCE) and relative increase rate of embryo dry weight (RIREDW) of the drought-sensitive cultivar ‘Xund-an no. 22’ decreased more significantly than those of the drought-tolerant ‘Zhengdan No. 958’. Furthermore, the changes in vacuole conformation of ‘Xundan no. 22’ were more marked. Meanwhile, the increases of the contents of CNC-spermidine (CNC-Spd) and CC-putrescine (CC-Put) in embryo tonoplast from ‘Zhengdan no. 958’ were more obvious than those from ‘Xundan no. 22’. Treatment with exogenous Spd not only alleviated the injury of drought stress to ‘Xundan no. 22’, but also enhanced the increases of CNC-Spd content and inhibited the changes in the vacuole conformation of this cultivar. The treatments of ‘Zhengdan no. 958’ with two inhibitors, methylglyoxyl-bis (guanylhydrazone) and phenanthrolin, significantly inhibited the drought stress-induced increases of CNC-Spd and CC-Put contents of the cultivar, respectively. Meanwhile, the treatments significantly aggravated the injury of drought stress to ‘Zhengdan no. 958’ and the changes in the vacuole conformation of this cultivar. All the results mentioned above suggest that the CNC-Spd and CC-Put in embryo tonoplast isolated from developing grains could enhance the tolerance of maize to drought stress by maintaining the vacuole conformation.
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- 2020
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5. Enhanced energy coupling for indirect-drive fast-ignition fusion targets
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W. W. Wang, B. H. Zhang, H. Zhang, L. H. Cao, Shaoping Zhu, G. L. Ren, L. Yang, S. Z. Wu, Xian-Tu He, L. Wei, Z. H. Yang, J. F. Gu, M. Q. He, S. Y. Zou, F. Lu, Jian Li, W. D. Zheng, B. Zhang, H. J. Liu, K. Du, H. Xu, L. F. Cao, W. M. Zhou, Y. M. Yang, Hong-bo Cai, Q. Tang, F. Zhang, J. F. Wu, Zhao-Shen Li, Z. Q. Yuan, B. Cui, L. Q. Shan, W. Qi, J. B. Chen, C. T. Zhou, Y. K. Ding, H. S. Zhang, B. Bi, M. H. Yu, Z. S. Dai, F. J. Ge, C. Tian, W. Y. Zhang, D. X. Liu, H. B. Du, Y. Q. Gu, and W. S. Zhang
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Physics ,Resistive touchscreen ,General Physics and Astronomy ,Plasma ,01 natural sciences ,010305 fluids & plasmas ,law.invention ,Magnetic field ,Computational physics ,Ignition system ,Physics::Plasma Physics ,Hohlraum ,law ,0103 physical sciences ,Relativistic electron beam ,010306 general physics ,National Ignition Facility ,Inertial confinement fusion - Abstract
One of the most promising approaches to reach a high gain in inertial confinement fusion is the fast ignition scheme. In this scheme, a relativistic electron beam is generated; this passes through the imploded plasma and deposits parts of its energy in the core. However, the large angular spread of the relativistic electron beam and the poorly controlled compression of the target affect realization of the fast ignition technique. Here, we demonstrate that indirectly driven (that is, driven by X-rays generated inside a gold hohlraum) implosions with a ‘high-foot’ and a short-coast time of less than 200 ps allow us to tightly compress the shell. Furthermore, we show the ability to optimize the symmetry of the imploding shell by changing the hohlraum length, successfully tuning a suitable tube-shaped shell to compensate for the large angular spread of the relativistic electron beam and to enhance the electron-to-core coupling efficiency via resistive magnetic fields. Benefiting from those experimental techniques, a significant enhancement in neutron yield was achieved in our indirectly driven fast ignition experiments. These results pave the way towards high-coupling fast ignition experiments with indirectly driven targets similar to those at the National Ignition Facility. Experiments realizing the indirect-drive fast ignition scheme for inertial confinement fusion are reported. Enabled by a tightly compressed target, an increase of neutron yield is observed.
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- 2020
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6. Synthesis, Crystal Structure, and Anticancer Activity of a In(III) Coordination Polymer Based on a Flexible 5-(4-Carboxybenzyl)Isophthalic Acid Ligand
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H. L. Guo, D. X. Liu, S. H. Li, D. M. Chen, G. Chen, and Wei Zhang
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Carboxybenzyl ,Thermogravimetric analysis ,Ligand ,Coordination polymer ,Crystal structure ,010402 general chemistry ,010403 inorganic & nuclear chemistry ,01 natural sciences ,Combinatorial chemistry ,0104 chemical sciences ,Inorganic Chemistry ,Isophthalic acid ,chemistry.chemical_compound ,chemistry ,Materials Chemistry ,MTT assay ,Physical and Theoretical Chemistry ,Single crystal - Abstract
In this study, a new In(III)-based coordination polymer [In(cpt)](DMF)(H2O) (1, DMF = N,N-dimethylformamide) is prepared using a newly designed ligand 5-(4-carboxybenzyl)isophthalic acid (H3cpt). Complex 1 is characterized by single crystal and powder X-ray diffraction and the thermogravimetric analysis. The structure of 1 involves one-dimensional chain-like units containing In(III), further combined with cpt3-ligands to obtain a 3D framework structure. The ultrasonic treatment method is used to produce nanoparticles of 1 (nano 1). MTT assay was carried out to explore the cytotoxicity of nano 1 on HMEC-1 hemangioendothelioma cells, and RT-PCR was utilized to assess activation of the PTEN/PI3K/Akt pathway.
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- 2020
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7. Relationship between Polyamines and Anaerobic Respiration of Wheat Seedling Root under Water-Logging Stress
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G. T. Liu, H. Y. Du, D. X. Liu, R. Kurtenbach, and H. P. Liu
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0106 biological sciences ,0301 basic medicine ,Anaerobic respiration ,biology ,Spermine ,Plant physiology ,Plant Science ,biology.organism_classification ,01 natural sciences ,Spermidine ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,chemistry ,Seedling ,Lactate dehydrogenase ,biology.protein ,Food science ,Pyruvate decarboxylase ,010606 plant biology & botany ,Alcohol dehydrogenase - Abstract
To elucidate the relationship between polyamines and anaerobic respiration of wheat (Triticum aestivum L.) seedling root under water-logging stress, the contents of polyamines (PAs), lactate and alcohol, and the activities of anaerobic respiration enzymes were investigated in seedling roots of two wheat cultivars, Yumai no. 18 and Yangmai no. 9. On the 5th day after water-logging treatment, spermidine (Spd) and spermine (Spm) contents increased significantly, pyruvate decarboxylase (PDC) activity increased and there was no difference between two cultivars. Alcohol dehydrogenase (ADH) activity and alcohol content in Yangmai no. 9 increased more markedly than Yumai no. 18, while lactate dehydrogenase (LDH) activity and the lactate content in the Yumai no. 18 increased more markedly than Yangmai no. 9. Treatments with exogenous Spd and Spm resulted in enhancing the increases in ADH activity, alcohol content, and the levels of Spd and Spm. This concomitantly inhibited the increases in LDH activity and lactate content in Yumai no. 18 under water-logging stress, alleviating stress-induced injury to the seedlings. Treatment with exogenous inhibitor methylglyoxyl-bis-guanylhydrazone (MGBG), resulted in reducing the increases in ADH activity, alcohol content, and Spd and Spm levels, promoting the increases in LDH activity and lactate content in Yangmai no. 9 under water-logging stress, and aggravating the stress-induced injury to the seedlings. The results suggested that under water-logging stress, increased Spd and Spm could facilitate the tolerance of wheat seedling to the stress by enhancing the increases in ADH activity and alcohol content, and inhibiting the increases in LDH activity and lactate content.
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- 2018
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8. Origin of the β1 parameter describing the nephelauxetic effect in transition metal ions with spin-forbidden emissions
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X.-K. Hu, Ya Tian, Mikhail G. Brik, Yongjie Wang, Chong-Geng Ma, D.-X. Liu, Z. Li, and A.M. Srivastava
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Physics ,Nephelauxetic effect ,Biophysics ,Empirical finding ,02 engineering and technology ,General Chemistry ,Optically active ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,Biochemistry ,Atomic and Molecular Physics, and Optics ,Transition metal ions ,0104 chemical sciences ,Ion ,Impurity ,Lattice (order) ,Electron configuration ,Atomic physics ,0210 nano-technology - Abstract
Recently a new nephelauxetic parameter β 1 = ( C C 0 ) 2 + ( B B 0 ) 2 , where B, C (B0, C0) are the Racah parameters of the transition metal ions in a crystal (free state), was introduced to rationalize the variations in the energy of the 2E-4A2 and 1E-3A2 spin-forbidden emission transitions that occur when ions with the d3 and d8 electron configurations are introduced as optically active impurities in a lattice. A critical analysis of the vast experimental data that is available in the archival literature shows that the energies of the above-mentioned transitions are linear functions of the β1 parameter. In this work, we further confirm this empirical finding and provide a derivation of the observed linear dependence by considering the Tanabe-Sugano matrices for the corresponding electron configurations.
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- 2018
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9. Comparative first-principles calculations of the electronic, optical, elastic and thermodynamic properties of XCaF3 (X = K, Rb, Cs) cubic perovskites
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Ali H. Reshak, Mikhail G. Brik, Chong-Geng Ma, Yongjie Wang, Li Li, D.-X. Liu, Michal Piasecki, and A. Suchocki
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010302 applied physics ,Materials science ,Chemical substance ,Condensed matter physics ,Band gap ,Hydrostatic pressure ,Thermodynamics ,02 engineering and technology ,Electronic structure ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,Moduli ,law.invention ,Magazine ,Ab initio quantum chemistry methods ,law ,0103 physical sciences ,General Materials Science ,0210 nano-technology ,Science, technology and society - Abstract
Three fluoroperovskites with the general formula XCaF3 (X = K, Rb, Cs) have been systematically studied using the first-principles methods. The structural, electronic, optical, elastic and thermodynamic properties of these three compounds were calculated at the ambient and elevated hydrostatic pressure. Variation of all these properties with pressure was analyzed; it was shown that the structural and elastic constants change linearly with increased pressure, whereas the calculated band gaps follow the quadratic dependence on pressure. Influence of the first cation variation (K – Rb – Cs) on these properties was discussed. Elastic anisotropy (directional dependence of the Young moduli) of these compounds was modeled and analyzed for the first time.
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- 2017
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10. Energy level schemes of f electronic configurations for the di-, tri-, and tetravalent lanthanides and actinides in a free state
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Chong-Geng Ma, Mikhail G. Brik, Ya Tian, D.-X. Liu, Andrzej Suchocki, and B. Feng
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Lanthanide ,Chemistry ,Diagram ,Biophysics ,02 engineering and technology ,General Chemistry ,Actinide ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,Biochemistry ,Atomic and Molecular Physics, and Optics ,0104 chemical sciences ,Ion ,Coulomb ,Energy level ,Electron configuration ,Atomic physics ,0210 nano-technology ,Energy (signal processing) - Abstract
The energy level diagrams are theoretically constructed for the di-, tri-, tetravalent lanthanide and actinide ions, using the Hartree–Fock calculated parameters of the Coulomb and spin–orbit interactions within f N ( N =1…13) electron configurations. These diagrams are analogous to Dieke's diagram, which was obtained experimentally. They can be used for an analysis of the optical spectra of all considered groups of ions in various environments. Systematic variation of some prominent energy levels (especially those ones with a potential for emission transitions) along the isoelectronic 4f/5f ions is considered.
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- 2016
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11. First-principle calculations of the structural, elastic and bonding properties of Cs2NaLnCl6 (Ln=La–Lu) cubic elpasolites
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Li Li, Chong-Geng Ma, B. Feng, D.-X. Liu, Y. Tian, and Mikhail G. Brik
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Lanthanide ,Chemistry ,Biophysics ,Thermodynamics ,02 engineering and technology ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,Biochemistry ,Atomic and Molecular Physics, and Optics ,0104 chemical sciences ,Ion ,Crystal ,Crystallography ,symbols.namesake ,Lattice constant ,Chemical bond ,symbols ,First principle ,Atomic number ,0210 nano-technology ,Debye model - Abstract
For the first time the structural, elastic and bonding properties of 15 elpasolite crystals Cs 2 NaLnCl 6 (Ln denotes all lanthanides from La to Lu) were calculated systematically using the CRYSTAL09 program. Several trends in the variation of these properties in relation to the atomic number Z of the Ln ions were found; in particular, the lattice parameter of these compounds decreases with Z (which can lead to the increased crystal field splittings of the 5d states for the heavier Ln ions), whereas the elastic constants and Debye temperature increase. The degree of covalency of the Ln–Cl chemical bonds is increased toward the end of the lanthanide series.
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- 2016
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12. 5d–4f emission of Eu2+ and electron-vibrational interaction in several alkaline earth sulfides doped with Eu2+ and Er3+
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D.-X. Liu, Mikhail G. Brik, Dhiraj K. Sardar, G.A. Kumar, and Y. Tian
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Phonon ,Chemistry ,Organic Chemistry ,Doping ,Analytical chemistry ,Phosphor ,Atomic and Molecular Physics, and Optics ,Spectral line ,Photon upconversion ,Electronic, Optical and Magnetic Materials ,Ion ,Inorganic Chemistry ,Emission spectrum ,Electrical and Electronic Engineering ,Physical and Theoretical Chemistry ,Atomic physics ,Spectroscopy ,Excitation - Abstract
Several alkaline earth sulfides doped with Eu2+ and Er3+ ions have been synthesized and shown to be potential phosphors for applications in the visible spectral range. The excitation and emission spectra corresponding to the 4f–5d interconfigurational transitions of Eu2+ were analyzed with an aim of extraction of the main parameters of the electron-vibrational interaction. The values of the Huang–Rhys factor, effective phonon energies, and zero-phonon line positions were systematically compared for all studied materials; physical trends were discussed. As a test for the validity of the obtained parameters, the Eu2+ 5d–4f emission bands were modeled to yield good agreement with the experimental spectra.
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- 2015
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13. The Stability and Breakage of Oil-in-water From Polymer Flooding Produced Water
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X. T. Zhao, D. X. Liu, W. Liang, and Jiqiang Li
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chemistry.chemical_classification ,Flocculation ,Materials science ,General Chemical Engineering ,Energy Engineering and Power Technology ,General Chemistry ,Polymer ,Geotechnical Engineering and Engineering Geology ,Produced water ,Surface tension ,Viscosity ,Fuel Technology ,Polymer degradation ,Chemical engineering ,chemistry ,Emulsion ,Zeta potential ,Organic chemistry - Abstract
Produced water from polymer flooding was much more difficult to be treated than that from water flooding. The mechanisms of polymer stabilizing the oil-in-water emulsion were the decreases of interfacial tension and electric conductivity, and the increases of zeta potential and bulk phase viscosity. Inorganic flocculant, the combination of inorganic flocculant and polymer degradation agent, and the combination organic flocculant and coagulant were used to break the oil-in-water emulsion stabilized with polymer. It was the most effective way to use the combination of organic flocculant and coagulant for treating polymer stabilizing oil-in-water emulsion.
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- 2013
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14. Bruton's tyrosine kinase phosphorylates Toll-like receptor 3 to initiate antiviral response
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Kong-Peng Lam, D. X. Liu, Mei Huang, Osamu Takeuchi, Shengli Xu, Shizuo Akira, Zi-Han Kang, Jianxin Huo, Koon-Guan Lee, and School of Biological Sciences
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MAP Kinase Signaling System ,viruses ,chemical and pharmacologic phenomena ,Protein Serine-Threonine Kinases ,Biology ,Virus Replication ,Antiviral Agents ,Mice ,Phosphatidylinositol 3-Kinases ,TANK-binding kinase 1 ,Interferon ,hemic and lymphatic diseases ,Agammaglobulinaemia Tyrosine Kinase ,medicine ,Animals ,Humans ,Bruton's tyrosine kinase ,Phosphorylation ,Kinase activity ,Protein kinase B ,Multidisciplinary ,Macrophages ,GTPase-Activating Proteins ,virus diseases ,Interferon-beta ,Biological Sciences ,Dengue Virus ,Macrophage Activation ,Protein-Tyrosine Kinases ,Science::Biological sciences [DRNTU] ,Toll-Like Receptor 3 ,Cell biology ,Enzyme Activation ,Mice, Inbred C57BL ,Adaptor Proteins, Vesicular Transport ,HEK293 Cells ,Biochemistry ,TRIF ,biology.protein ,Cytokines ,Proto-Oncogene Proteins c-akt ,Tyrosine kinase ,Transcription Factors ,medicine.drug - Abstract
Toll-like receptor 3 (TLR3) mediates antiviral response by recognizing double-stranded RNA. Its cytoplasmic domain is tyrosine phosphorylated upon ligand binding and initiates downstream signaling via the adapter TIR-containing adaptor inducing interferon–β (TRIF). However, the kinase responsible for TLR3 phosphorylation remains unknown. We show here that Bruton's tyrosine kinase (BTK)-deficient macrophages failed to secrete inflammatory cytokines and IFN-β upon TLR3 stimulation and were impaired in clearing intracellular dengue virus infection. Mutant mice were also less susceptible to d -galactosamine/p(I:C)-induced sepsis. In the absence of BTK, TLR3-induced phosphoinositide 3-kinase (PI3K), AKT and MAPK signaling and activation of NFκB, IRF3, and AP-1 transcription factors were all defective. We demonstrate that BTK directly phosphorylates TLR3 and in particular the critical Tyr759 residue. BTK point mutations that abrogate or led to constitutive kinase activity have opposite effects on TLR3 phosphorylation. Loss of BTK also compromises the formation of the downstream TRIF/receptor-interacting protein 1 (RIP1)/TBK1 complex. Thus, BTK plays a critical role in initiating TLR3 signaling.
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- 2012
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15. Towards construction of viral vectors based on avian coronavirus infectious bronchitis virus for gene delivery and vaccine development
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Guang Chen, Hongyuan Shen, Shou Guo Fang, Felicia P. L. Tay, Bo Chen, and D. X. Liu
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animal structures ,viruses ,Genetic Vectors ,Green Fluorescent Proteins ,Infectious bronchitis virus ,Chick Embryo ,Biology ,Gene delivery ,Dengue virus ,medicine.disease_cause ,Article ,Genomic Instability ,Virus ,Viral vector ,Microbiology ,Viral Proteins ,Genes, Reporter ,Luciferases, Firefly ,Virology ,medicine ,Animals ,Sequence Deletion ,Coronavirus ,Viral Vaccines ,Genetic Therapy ,Dengue Virus ,Avian coronavirus infectious bronchitis virus ,Avian infectious bronchitis ,biology.organism_classification ,Severe acute respiratory syndrome-related coronavirus ,Reverse genetics ,Avian infectious bronchitis virus ,Chickens - Abstract
Manipulation of the coronavirus genome to accommodate and express foreign genes is an attractive approach for gene delivery and vaccine development. By using an infectious cloning system developed recently for the avian coronavirus infectious bronchitis virus (IBV), the enhanced green fluorescent protein (EGFP) gene, the firefly luciferase gene and several host and viral genes (eIF3f, SARS ORF6, Dengue virus 1 core protein gene) were inserted into various positions of the IBV genome, and the effects on gene expression, virus recovery, and stability in cell culture were studied. Selected viruses were also inoculated into chicken embryos for studies of foreign gene expression at different tissue level. The results demonstrated the stability of recombinant viruses depends on the intrinsic properties of the foreign gene itself as well as the position at which the foreign genes were inserted. For unstable viruses, the loss of expression of the inserted genes was found to result from a large deletion of the inserted gene and even IBV backbone sequences. This represents a promising system for development of coronavirus-based gene delivery vectors and vaccines against coronavirus and other viral infections in chicken.
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- 2009
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16. Proteolytic Activation of the Spike Protein at a Novel RRRR/S Motif Is Implicated in Furin-Dependent Entry, Syncytium Formation, and Infectivity of Coronavirus Infectious Bronchitis Virus in Cultured Cells
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D. X. Liu and Yoshiyuki Yamada
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Proteases ,animal structures ,viruses ,Amino Acid Motifs ,Infectious bronchitis virus ,Immunology ,Biology ,medicine.disease_cause ,Giant Cells ,Microbiology ,Cell Fusion ,Viral Envelope Proteins ,Viral entry ,Virology ,Chlorocebus aethiops ,medicine ,Animals ,Vero Cells ,Furin ,Coronavirus ,Syncytium ,Membrane Glycoproteins ,Cell fusion ,Virus Internalization ,biology.organism_classification ,Molecular biology ,Virus-Cell Interactions ,Amino Acid Substitution ,Insect Science ,Spike Glycoprotein, Coronavirus ,embryonic structures ,Mutagenesis, Site-Directed ,Vero cell ,biology.protein ,Avian infectious bronchitis virus - Abstract
The spike (S) protein of the coronavirus (CoV) infectious bronchitis virus (IBV) is cleaved into S1 and S2 subunits at the furin consensus motif RRFRR 537 /S in virus-infected cells. In this study, we observe that the S2 subunit of the IBV Beaudette strain is additionally cleaved at the second furin site (RRRR 690 /S) in cells expressing S constructs and in virus-infected cells. Detailed time course experiments showed that a peptide furin inhibitor, decanoyl-Arg-Val-Lys-Arg-chloromethylketone, blocked both viral entry and syncytium formation. Site-directed mutagenesis studies revealed that the S1/S2 cleavage by furin was not necessary for, but could promote, syncytium formation by and infectivity of IBV in Vero cells. In contrast, the second site is involved in the furin dependence of viral entry and syncytium formation. Mutations of the second site from furin-cleavable RRRR/S to non-furin-cleavable PRRRS and AAARS, respectively, abrogated the furin dependence of IBV entry. Instead, a yet-to-be-identified serine protease(s) was involved, as revealed by protease inhibitor studies. Furthermore, sequence analysis of CoV S proteins by multiple alignments showed conservation of an XXXR/S motif, cleavable by either furin or other trypsin-like proteases, at a position equivalent to the second IBV furin site. Taken together, these results suggest that proteolysis at a novel XXXR/S motif in the S2 subunit might be a common mechanism for the entry of CoV into cells.
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- 2009
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17. Isothermal section of the Dy–Co–Ti ternary system at 500°C
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Q. X. Long, J.L. Yan, D. X. Liu, J. Q. Li, Jinli Huang, and Yinghong Zhuang
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Ternary numeral system ,Chemistry ,Mechanical Engineering ,Metals and Alloys ,Analytical chemistry ,Space group ,chemistry.chemical_element ,Isothermal process ,Crystallography ,Mechanics of Materials ,Phase (matter) ,X-ray crystallography ,Materials Chemistry ,Dysprosium ,Thermal analysis ,Phase diagram - Abstract
The isothermal section of the Dy–Co–Ti system at 500 °C has been investigated in the whole composition range by means of X-ray diffraction, thermal analysis, scanning electron microscopy and energy dispersive X-ray spectroscopy. The only ternary phase DyTi x Co 12− x is of ThMn 12 -type structure, space group I 4/ mmm , and shows a small homogeneity range of 1 ≤ x ≤ 1.6. The lattice parameters for DyTi x Co 12− x with 1 ≤ x ≤ 1.56 are a = 0.8336(4)–0.8402(1) nm and c = 0.4691(3)–0.4727(1) nm. Along a constant Dy concentration, the solid solubilities of Ti in the compounds Dy 2 Co 17 , DyCo 3 , DyCo 2 and Dy 3 Co are about 2.0, 2.0, 3.0 and 4.0 at.%, respectively. The TiCo phase has a homogeneity range of 50–54 at.% Co at 500 °C and dissolves up to 2.0 at.% Dy.
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- 2009
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18. Gene expression profiling by microarray analysis reveals an important role for caspase-1 in dengue virus-induced p53-mediated apoptosis
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A. M. A. Nasirudeen and D. X. Liu
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Tumor suppressor gene ,Apoptosis ,Dengue virus ,medicine.disease_cause ,Cell Line ,Virology ,Gene expression ,medicine ,Humans ,Gene silencing ,Gene Knock-In Techniques ,Gene Silencing ,Oligonucleotide Array Sequence Analysis ,Regulation of gene expression ,biology ,Microarray analysis techniques ,Gene Expression Profiling ,Caspase 1 ,Dengue Virus ,biology.organism_classification ,Molecular biology ,Gene expression profiling ,Flavivirus ,Infectious Diseases ,Gene Expression Regulation ,Tumor Suppressor Protein p53 - Abstract
Recently, a dengue virus-induced apoptosis p53- and mitochondria-mediated were reported in human and animal cells. To understand further the underlying mechanisms, a p53-deficient cell line, H1299, and a p53-knockin cell line, H273, were infected with dengue type 1 virus and the cellular gene expression profiles at the mRNA level were analyzed by affymetrix array analysis. The results showed 183 genes with at least twofold increase at mRNA expression level in dengue virus-infected cells. Among the 183 genes, 68 genes were up-regulated in both H1299 and H273 cells and 78 genes were found to be up-regulated in only H273 cells. Eleven selected genes, mainly involved in IFN-pathway, cell cycle, signal transduction, and ubiquitin-proteasome pathways were confirmed using qualitative and quantitative PCR. Interestingly, an approximately 32-fold increase in caspase-1 expression was observed in the p53-knockin cell line, H273. Gene silencing of caspase-1 or inhibition of caspase-1 activity led to reduction in dengue virus-induced apoptosis with minimal effect on virus replication.
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- 2009
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19. Conductance and amantadine binding of a pore formed by a lysine-flanked transmembrane domain of SARS coronavirus envelope protein
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Krupakar Parthasarathy, Li Fang Ng, Uma Maheswari, Xiandi Gong, D. X. Liu, and Jaume Torres
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Models, Molecular ,Lipid Bilayers ,Mutant ,Lysine ,Peptide ,Biology ,medicine.disease_cause ,Antiviral Agents ,Biochemistry ,Article ,Viroporin Proteins ,Structure-Activity Relationship ,Protein structure ,Viral Envelope Proteins ,Amantadine ,medicine ,Lipid bilayer ,Molecular Biology ,Coronavirus ,chemistry.chemical_classification ,Dose-Response Relationship, Drug ,Electric Conductivity ,Surface Plasmon Resonance ,Transmembrane protein ,Protein Structure, Tertiary ,Transmembrane domain ,Severe acute respiratory syndrome-related coronavirus ,chemistry ,Mutation ,Biophysics - Abstract
The coronavirus responsible for the severe acute respiratory syndrome (SARS-CoV) contains a small envelope protein, E, with putative involvement in host cell apoptosis and virus morphogenesis. It has been suggested that E protein can form a membrane destabilizing transmembrane (TM) hairpin, or homooligomerize to form a regular TM alpha-helical bundle. We have shown previously that the topology of the alpha-helical putative TM domain of E protein (ETM), flanked by two lysine residues at C and N termini to improve solubility, is consistent with a regular TM alpha-helix, with orientational parameters in lipid bilayers that are consistent with a homopentameric model. Herein, we show that this peptide, reconstituted in lipid bilayers, shows sodium conductance. Channel activity is inhibited by the anti-influenza drug amantadine, which was found to bind our preparation with moderate affinity. Results obtained from single or double mutants indicate that the organization of the transmembrane pore is consistent with our previously reported pentameric alpha-helical bundle model.
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- 2007
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20. Translation initiation at an upstream CUG codon regulates the expression of Hibiscus chlorotic ringspot virus coat protein
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Dora Chin-Yen Koh, Xiaoxing Wang, Sek-Man Wong, and D. X. Liu
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Gene Expression Regulation, Viral ,Genetics ,Cancer Research ,viruses ,Blotting, Western ,Codon, Initiator ,Leaky scanning ,Translation (biology) ,Biology ,Open reading frame ,Internal ribosome entry site ,Infectious Diseases ,Eukaryotic translation ,Start codon ,Protein Biosynthesis ,Tombusviridae ,Virology ,Upstream open reading frame ,Mutagenesis, Site-Directed ,Capsid Proteins ,Electrophoresis, Polyacrylamide Gel ,Subgenomic mRNA - Abstract
Viruses depend heavily on host cells for replication and exploit the host translation machinery for its gene expression using various unorthodox translation mechanisms. According to the conventional scanning model, only the 5'-proximal gene in the viral RNA is accessible to the ribosomes whereas other genes are silent. In this study, we use a model plant RNA virus, Hibiscus chlorotic ringspot virus (HCRSV), to investigate various translation mechanisms involved in regulation of the expression of internal genes. The 3'-end 1.2kb region of HCRSV genomic and subgenomic RNAs were shown to encode four polypeptides of 38, 27, 25 and 22.5kDa. Mutagenesis studies revealed that a CUG codon ((2570)CUG) is the initiation codon for p27, the longest of the three co-C-terminal products (p27, p25 and p22.5), and translation of p25 and p22.5 was initiated at (2603)AUG and (2666)AUG, respectively. Translation initiation of the p27 expression at the (2570)CUG codon regulates the expression of p38, the viral coat protein through a leaky scanning mechanism and mutational analysis of an upstream open reading frame (ORF) demonstrated that initiation of the p27 expression at this CUG codon (instead of an AUG) may play a role in maintaining the ratio of p27 and p38. In addition, a previously identified internal ribosome entry site was shown to control the expression of p27 and p38 in the subgenomic RNA 2.
- Published
- 2006
- Full Text
- View/download PDF
21. Identification of Hepta- and Octo-Uridine stretches as sole signals for programmed +1 and -1 ribosomal frameshifting during translation of SARS-CoV ORF 3a variants
- Author
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Xiaoxing Wang, D. X. Liu, and Sek-Man Wong
- Subjects
Population ,Biology ,Regulatory Sequences, Ribonucleic Acid ,Slippery sequence ,Ribosomal frameshift ,Article ,Frameshift mutation ,Open Reading Frames ,Viral Proteins ,Start codon ,Chlorocebus aethiops ,Genetics ,Animals ,RNA, Messenger ,education ,Gene ,Uridine ,education.field_of_study ,Translational frameshift ,Frameshifting, Ribosomal ,Genetic Variation ,Genetic code ,Molecular biology ,Severe acute respiratory syndrome-related coronavirus ,COS Cells ,Mutation ,RNA, Viral - Abstract
Programmed frameshifting is one of the translational recoding mechanisms that read the genetic code in alternative ways. This process is generally programmed by signals at defined locations in a specific mRNA. In this study, we report the identification of hepta- and octo-uridine stretches as sole signals for programmed +1 and -1 ribosomal frameshifting during translation of severe acute respiratory syndrome coronavirus (SARS-CoV) ORF 3a variants. SARS-CoV ORF 3a encodes a minor structural protein of 274 amino acids. Over the course of cloning and expression of the gene, a mixed population of clones with six, seven, eight and nine T stretches located 14 nt downstream of the initiation codon was found. In vitro and in vivo expression of clones with six, seven and eight Ts, respectively, showed the detection of the full-length 3a protein. Mutagenesis studies led to the identification of the hepta- and octo-uridine stretches as slippery sequences for efficient frameshifting. Interestingly, no stimulatory elements were found in the sequences upstream or downstream of the slippage site. When the hepta- and octo-uridine stretches were used to replace the original slippery sequence of the SARS-CoV ORF 1a and 1b, efficient frameshift events were observed. Furthermore, the efficiencies of frameshifting mediated by the hepta- and octo-uridine stretches were not affected by mutations introduced into a downstream stem-loop structure that totally abolish the frameshift event mediated by the original slippery sequence of ORF 1a and 1b. Taken together, this study identifies the hepta- and octo-uridine stretches that function as sole elements for efficient +1 and -1 ribosomal frameshift events.
- Published
- 2006
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- View/download PDF
22. Selection of and recombination between minor variants lead to the adaptation of an avian coronavirus to primate cells
- Author
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Shuo Shen, D. X. Liu, Felicia P. L. Tay, and Shou Guo Fang
- Subjects
Primates ,animal structures ,Gene Transfer, Horizontal ,viruses ,Infectious bronchitis virus ,Molecular Sequence Data ,Biophysics ,Biology ,medicine.disease_cause ,Biochemistry ,Article ,Viral Envelope Proteins ,Chlorocebus aethiops ,Genotype ,medicine ,Animals ,Amino Acid Sequence ,Selection, Genetic ,Adaptation ,Selection ,Molecular Biology ,Gene ,Coronavirus ,Recombination, Genetic ,Genetics ,Membrane Glycoproteins ,Strain (chemistry) ,Avian coronavirus ,Variants ,Genetic Variation ,Embryo ,Cell Biology ,Adaptation, Physiological ,Virology ,Recombination ,Spike Glycoprotein, Coronavirus ,embryonic structures ,Vero cell ,Vero cells ,Chickens - Abstract
An interesting question posed by the current evidence that severe acute respiratory syndrome coronavirus may be originated from an animal coronavirus is how such an animal coronavirus breaks the host species barrier and becomes zoonotic. In this report, we study the chronological order of genotypic changes in the spike protein of avian coronavirus infectious bronchitis virus (IBV) during its adaptation to a primate cell line. Adaptation of the Beaudette strain of IBV from chicken embryo to Vero cells showed the accumulation of 49 amino acid mutations. Among them, 26 (53.06%) substitutions were located in the S protein. Sequencing analysis and comparison of the S gene demonstrated that the majority of the mutations were accumulated and fixed at passage 7 on Vero cells and minor variants were isolated in several passages. Evidence present suggests that the dominant Vero cell-adapted IBV strain may be derived from the chicken embryo passages by selection of and potential recombination between the minor variants. This may explain why adaptation is a rapid process and the dominant strain, once adapted to a new host cell, becomes relatively stable.
- Published
- 2005
- Full Text
- View/download PDF
23. Further Identification and Characterization of Novel Intermediate and Mature Cleavage Products Released from the ORF 1b Region of the Avian Coronavirus Infectious Bronchitis Virus 1a/1b Polyprotein
- Author
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H. Y. Xu, Shuo Shen, K. P. Lim, and D. X. Liu
- Subjects
Polyproteins ,Infectious bronchitis virus ,Biology ,Cleavage (embryo) ,medicine.disease_cause ,Article ,Open Reading Frames ,Viral Proteins ,Virology ,Chlorocebus aethiops ,medicine ,Animals ,Avian coronavirus ,Protein Precursors ,Vero Cells ,Coronavirus 3C Proteases ,Coronavirus ,Endoplasmic reticulum ,Molecular biology ,Staining ,Cysteine Endopeptidases ,Kinetics ,Protein Processing, Post-Translational ,Subcellular Fractions - Abstract
The coronavirus 3C-like proteinase is one of the viral proteinases responsible for processing of the 1a and 1a/1b polyproteins to multiple mature products. In cells infected with avian coronavirus infectious bronchitis virus (IBV), three proteins of 100, 39, and 35 kDa, respectively, were previously identified as mature cleavage products released from the 1b region of the 1a/1b polyprotein by the 3C-like proteinase. In this report, we show the identification of two more cleavage products of 68 and 58 kDa released from the same region of the polyprotein. In addition, two stable intermediate cleavage products with molecular masses of 160 and 132 kDa, respectively, were identified in IBV-infected cells. The 160-kDa protein was shown to be an intermediate cleavage product covering the 100- and 68-kDa proteins, and the 132-kDa protein to be an intermediate cleavage product covering the 58-, 39-, and 35-kDa proteins. Immunofluorescent staining of IBV-infected cells and cells expressing individual cleavage products showed that the 100-, 68-, and 58-kDa proteins were associated with the membranes of the endoplasmic reticulum, and the 39- and 35-kDa proteins displayed diffuse distribution patterns.
- Published
- 2001
- Full Text
- View/download PDF
24. Further Characterization of the Coronavirus Infectious Bronchitis Virus 3C-like Proteinase and Determination of a New Cleavage Site
- Author
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D. X. Liu and Lisa F. P. Ng
- Subjects
Cytoplasm ,Polyproteins ,Recombinant Fusion Proteins ,Proteolysis ,Infectious bronchitis virus ,Biology ,Transfection ,Cleavage (embryo) ,medicine.disease_cause ,Article ,Substrate Specificity ,Proteinase 3 ,Virology ,Chlorocebus aethiops ,medicine ,Animals ,Amino Acid Sequence ,Fluorescent Antibody Technique, Indirect ,Vero Cells ,Peptide sequence ,Coronavirus 3C Proteases ,Sequence Deletion ,Coronavirus ,COS cells ,medicine.diagnostic_test ,Intracellular Membranes ,Molecular biology ,Peptide Fragments ,Molecular Weight ,Cysteine Endopeptidases ,Kinetics ,Amino Acid Substitution ,Biochemistry ,COS Cells ,Cell fractionation ,Protein Processing, Post-Translational - Abstract
Coronavirus infectious bronchitis virus (IBV) encodes a trypsin-like proteinase (3C-like proteinase) by ORF 1a, which has been demonstrated to play a pivotal role in proteolytic processing of gene 1-encoded polyproteins. In our previous studies, the proteinase was identified as a 33-kDa protein in IBV-infected cells, and its catalytic center was shown to consist of H(2820) and C(2922) residues. It is released from the 1a and 1a/1b polyproteins by autoprocessing at two Q-S dipeptide bonds (Q(2779)-S(2780) and Q(3086)-S(3087)). In this report, further characterization of the two cleavage sites demonstrates that the N-terminal Q(2779)-S(2780) site is tolerant to mutations at the P1 position. Deletion of the C-terminal region of the proteinase shows that a significant amount of the enzymatic activity is maintained upon deletion of up to 67 amino acids, suggesting that the extreme C-terminal region may be dispensable for the proteolytic activity of the proteinase. Analysis of the autoprocessing kinetics in vitro reveals that proteolysis at the Q(2779)-S(2780) site is the first cleavage event mediated by this proteinase. This is followed by cleavage at the Q(3086)-S(3087) site. The occurrence of both cleavage events in intact cells is potentially rapid and efficient, as no intermediate cleavage products covering the proteinase were detected in either IBV-infected or transfected cells. Immunofluorescence microscopy and subcellular fractionation studies further show differential subcellular localization of the proteinase in IBV-infected cells and in cells expressing the 3C-like proteinase alone, indicating that additional roles in viral replication might be played by this protein. Finally, a Q-A (Q(3379)-A(3380)) dipeptide bond encoded by nucleotides 10,663 to 10,668 was demonstrated to be a cleavage site of the proteinase.
- Published
- 2000
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- View/download PDF
25. Acquisition of Cell–Cell Fusion Activity by Amino Acid Substitutions in Spike Protein Determines the Infectivity of a Coronavirus in Cultured Cells
- Author
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Xiao Bo Liu, Felicia P. L. Tay, Yoshiyuki Yamada, Shou Guo Fang, and D. X. Liu
- Subjects
animal structures ,Blotting, Western ,Molecular Sequence Data ,lcsh:Medicine ,Fluorescent Antibody Technique ,Biology ,medicine.disease_cause ,Cell Fusion ,Viral Envelope Proteins ,Virology ,medicine ,Animals ,Amino Acid Sequence ,lcsh:Science ,Peptide sequence ,Gene ,Cells, Cultured ,Coronavirus ,Infectivity ,Multidisciplinary ,Cell fusion ,Membrane Glycoproteins ,Sequence Homology, Amino Acid ,Reverse Transcriptase Polymerase Chain Reaction ,lcsh:R ,Virology/Mechanisms of Resistance and Susceptibility, including Host Genetics ,Flow Cytometry ,Virology/Host Invasion and Cell Entry ,Molecular biology ,Virology/Virus Evolution and Symbiosis ,Heptad repeat ,Electroporation ,Amino Acid Substitution ,Cell culture ,embryonic structures ,Spike Glycoprotein, Coronavirus ,Vero cell ,Mutagenesis, Site-Directed ,lcsh:Q ,Research Article - Abstract
Coronavirus host and cell specificities are determined by specific interactions between the viral spike (S) protein and host cell receptor(s). Avian coronavirus infectious bronchitis (IBV) has been adapted to embryonated chicken eggs, primary chicken kidney (CK) cells, monkey kidney cell line Vero, and other human and animal cells. Here we report that acquisition of the cell-cell fusion activity by amino acid mutations in the S protein determines the infectivity of IBV in cultured cells. Expression of S protein derived from Vero- and CK-adapted strains showed efficient induction of membrane fusion. However, expression of S protein cloned from the third passage of IBV in chicken embryo (EP3) did not show apparent syncytia formation. By construction of chimeric S constructs and site-directed mutagenesis, a point mutation (L857-F) at amino acid position 857 in the heptad repeat 1 region of S protein was shown to be responsible for its acquisition of the cell-cell fusion activity. Furthermore, a G405-D point mutation in the S1 domain, which was acquired during further propagation of Vero-adapted IBV in Vero cells, could enhance the cell-cell fusion activity of the protein. Re-introduction of L857 back to the S gene of Vero-adapted IBV allowed recovery of variants that contain the introduced L857. However, compensatory mutations in S1 and some distant regions of S2 were required for restoration of the cell-cell fusion activity of S protein carrying L857 and for the infectivity of the recovered variants in cultured cells. This study demonstrates that acquisition of the cell-cell fusion activity in S protein determines the selection and/or adaptation of a coronavirus from chicken embryo to cultured cells of human and animal origins.
- Published
- 2009
- Full Text
- View/download PDF
26. Induction of p53-dependent and mitochondria-mediated cell death pathway by dengue virus infection of human and animal cells
- Author
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A M A Nasirudeen, D. X. Liu, and Li Wang
- Subjects
Programmed cell death ,viruses ,Immunology ,Apoptosis ,Dengue virus ,medicine.disease_cause ,Microbiology ,Dengue fever ,Cell Line ,Cell Line, Tumor ,Chlorocebus aethiops ,medicine ,In Situ Nick-End Labeling ,Animals ,Humans ,Antibody-dependent enhancement ,Vero Cells ,bcl-2-Associated X Protein ,Membrane Potential, Mitochondrial ,biology ,Dengue Virus ,biology.organism_classification ,medicine.disease ,Virology ,Molecular biology ,Mitochondria ,Up-Regulation ,Flavivirus ,Infectious Diseases ,Vero cell ,DNA fragmentation ,Tumor Suppressor Protein p53 - Abstract
Previous studies have suggested that cells undergo apoptosis in response to dengue virus infection. However, the potential significance of dengue virus-induced apoptosis and the pathways are still not clearly defined. In this study, comparative analysis of dengue virus-induced apoptosis in BHK, H1299, HUH-7 and Vero cell lines was carried out. We show here that infection of BHK, HUH-7 and Vero cell lines with dengue type 1 virus (DEN1V) induces cell death typical of apoptosis. Virus-induced cell death was assayed by in situ terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling, detection of oligonucleosomal DNA fragmentation, DNA content analysis and assay for the externalization of phosphatidylserine residues. Detailed study of dengue virus infection in HUH-7 cells showed activation of cell death via the mitochondrial pathway causing lowering of mitochondrial transmembrane potential (DeltaPsim) in HUH-7 cells. Interestingly, in the p53-deficient cell line, H1299, apoptosis was largely undetectable compared with the other cell lines used; suggesting that a p53- and mitochondria-mediated cell death pathway may play an important role in dengue virus-induced apoptosis.
- Published
- 2008
27. Erratum: Artemin is estrogen regulated and mediates antiestrogen resistance in mammary carcinoma
- Author
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J Kang, P X Qian, V Pandey, J K Perry, L D Miller, E T Liu, T Zhu, D X Liu, and P E Lobie
- Subjects
Cancer Research ,Genetics ,Molecular Biology - Published
- 2012
- Full Text
- View/download PDF
28. Hemoglobinopathies in Xinjiang
- Author
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H. J. Li, D. X. Liu, L. Li, Z. G. Liu, F. Qing, S. L. Lo, Q. S. Kang, J. Chen, Y. Q. Chang, D. S. Xie, J. Zhao, X. P. Han, W. Z. Yu, D. W. Pang, Y. X. Lian, Z. L. Huang, C. S. Chang, W. X. An, S. C. Cha, S. N. Ma, S. G. Li, R. Y. Li, S. H. Yang, M. R. Li, Y. L. Ni, X. Y. Lu, S. Z. Hou, S. M. Jing, X. S. Chang, S. H. Chen, and C. L. He
- Subjects
China ,Heterozygote ,Hemoglobins, Abnormal ,Thalassemia ,Incidence (epidemiology) ,Biochemistry (medical) ,Clinical Biochemistry ,Hematology ,Biology ,medicine.disease ,Abnormal hemoglobin ,Hemoglobinopathies ,Ethnicity ,medicine ,Humans ,Epidemiologic Methods ,Genetics (clinical) ,Demography - Abstract
The present report summarizes the results of a search for hemoglobinopathies in 142,171 persons in Xinjiang, the results of structural analyses of abnormal hemoglobins in 134 families, and the incidence and distribution of abnormal hemoglobins and the thalassemias in eight ethnic groups or nationalities.
- Published
- 1986
- Full Text
- View/download PDF
29. Regulation of the p38 mitogen-activated protein kinase and dual-specificity phosphatase 1 feedback loop modulates the induction of interleukin 6 and 8 in cells infected with coronavirus infectious bronchitis virus
- Author
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Xiaoxing Wang, Ying Liao, D. X. Liu, Mei Huang, and James P. Tam
- Subjects
MAPK/ERK pathway ,Pyridines ,Infectious bronchitis virus ,Biology ,p38 MAPK ,medicine.disease_cause ,p38 Mitogen-Activated Protein Kinases ,Article ,Virus ,Cell Line, Tumor ,Virology ,Chlorocebus aethiops ,Dual-specificity phosphatase ,medicine ,Animals ,Humans ,Interleukin 8 ,RNA, Small Interfering ,Vero Cells ,Oligonucleotide Array Sequence Analysis ,Coronavirus ,Feedback, Physiological ,IL-6 ,Innate immune system ,IL-8 ,Interleukin-6 ,Interleukin-8 ,Imidazoles ,Interleukin ,Dual Specificity Phosphatase 1 ,Acquired immune system ,Pro-inflammatory cytokines and chemokines ,Cell biology ,biology.protein ,RNA Interference ,DUSP 1 - Abstract
Induction of pro-inflammatory response is a crucial cellular process that detects and controls the invading viruses at early stages of the infection. Along with other innate immunity, this nonspecific response would either clear the invading viruses or allow the adaptive immune system to establish an effective antiviral response at late stages of the infection. The objective of this study was to characterize cellular mechanisms exploited by coronavirus infectious bronchitis virus (IBV) to regulate the induction of two pro-inflammatory cytokines, interleukin (IL)-6 and IL-8, at the transcriptional level. The results showed that IBV infection of cultured human and animal cells activated the p38 mitogen-activated protein kinase (MAPK) pathway and induced the expression of IL-6 and IL-8. Meanwhile, IBV has developed a strategy to counteract the induction of IL-6 and IL-8 by inducing the expression of dual-specificity phosphatase 1 (DUSP1), a negative regulator of the p38 MAPK, in order to limit the production of an excessive amount of IL-6 and IL-8 in the infected cells. As activation of the p38 MAPK pathway and induction of IL-6 and IL-8 may have multiple pathogenic effects on the whole host as well as on individual infected cells, regulation of the p38 MAPK and DUSP1 feedback loop by IBV may modulate the pathogenesis of the virus.
- Full Text
- View/download PDF
30. A single amino acid mutation in the spike protein of coronavirus infectious bronchitis virus hampers its maturation and incorporation into virions at the nonpermissive temperature
- Author
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Y.C Law, D. X. Liu, and Shuo Shen
- Subjects
Cytoplasm ,Glycoside Hydrolases ,Acclimatization ,Glutamine ,Protein subunit ,Infectious bronchitis virus ,Mutant ,Biology ,Transfection ,medicine.disease_cause ,Article ,Virus ,Viral Envelope Proteins ,Leucine ,Virology ,Chlorocebus aethiops ,medicine ,Animals ,Humans ,Point Mutation ,Vero Cells ,Coronavirus ,Mutation ,Membrane Glycoproteins ,Virus Assembly ,Point mutation ,Temperature ,Wild type ,Virion ,Amino Acid Substitution ,Spike Glycoprotein, Coronavirus ,Glycoprotein ,HeLa Cells - Abstract
The spike (S) glycoprotein of coronavirus is responsible for receptor binding and membrane fusion. A number of variants with deletions and mutations in the S protein have been isolated from naturally and persistently infected animals and tissue cultures. Here, we report the emergence and isolation of two temperature sensitive (ts) mutants and a revertant in the process of cold-adaptation of coronavirus infectious bronchitis virus (IBV) to a monkey kidney cell line. The complete sequences of wild type (wt) virus, two ts mutants, and the revertant were compared and variations linked to phenotypes were mapped. A single amino acid reversion (L294-to-Q) in the S protein is sufficient to abrogate the ts phenotype. Interestingly, unlike wt virus, the revertant grows well at and below 32 degrees C, the permissive temperature, as it carries other mutations in multiple genes that might be associated with the cold-adaptation phenotype. If the two ts mutants were allowed to enter cells at 32 degrees C, the S protein was synthesized, core-glycosylated and at least partially modified at 40 degrees C. However, compared with wt virus and the revertant, no infectious particles of these ts mutants were assembled and released from the ts mutant-infected cells at 40 degrees C. Evidence presented demonstrated that the Q294-to-L294 mutation, located at a highly conserved domain of the S1 subunit, might hamper processing of the S protein to a matured 180-kDa, endo-glycosidase H-resistant glycoprotein and the translocation of the protein to the cell surface. Consequently, some essential functions of the S protein, including mediation of cell-to-cell fusion and its incorporation into virions, were completely abolished.
- Full Text
- View/download PDF
31. Thermal response analysis of reinforced concrete box girder during hot-mixed asphalt mixture paving.
- Author
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D Zheng, Z D Qian, D X Liu, and Q B Huang
- Published
- 2019
- Full Text
- View/download PDF
32. The effect of pH on the aqueous reactive species in sodium phosphate buffers induced by surface air discharge.
- Author
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Z C Liu, D X Liu, S T Luo, W T Wang, Z J Liu, A J Yang, M Z Rong, H L Chen, and M G Kong
- Subjects
- *
PLASMA chemistry , *SODIUM phosphates , *PH effect , *AIR , *SPECIES , *SOLUTION (Chemistry) - Abstract
The solution pH is an important parameter for the applications of atmospheric plasmas such as sewage disposal, food processing and biomedicine, mainly because the pH affects both the liquid-phase chemistry and the oxidation potential of the plasma-generated aqueous reactive species. In order to unravel the correlation between the aqueous reactive species and the solution pH, a numerical model was developed in this paper to study the sodium phosphate buffers treated by the surface plasma in atmospheric air, and the initial concentrations of phosphates in the buffers were altered to make the initial pH change from 3.0 to 11.9. After treated by the surface air plasma for 1 min, it was found that the concentrations of aqueous O3, HNO2, HNO3 and NO3 decreased with an increase in the initial pH, while those of , O−, , , , ONOO− and O2NOO− anions increased. Additionally, the concentrations of aqueous H2O2, HO3, and NO2 changed little with the initial pH. The oxidation potentials of O3, OH, H2O2 and HO2 decreased with the increasing initial pH, but those of ONOOH and ONOO− peaked at pH ~ 8. Some phosphorous compounds such as were also produced, which had an undeniable effect on the liquid-phase chemistry of the reactive species at pH ⩾ 6.0. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
33. Post-discharge evolution of reactive species in the water activated by a surface air plasma: a modeling study.
- Author
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Z C Liu, D X Liu, C Chen, Z J Liu, A J Yang, M Z Rong, H L Chen, and M G Kong
- Subjects
- *
PLASMA gases , *ANTIBACTERIAL agents , *CHEMICAL reactions - Abstract
Plasma-activated water (PAW) has been reported to sustain a bactericidal ability for months. However, many reactive species regarded as the main antibacterial agents in PAW have short lifetimes of less than one second. In order to explain the prolonged antibacterial ability of PAW and predict how to extend its effective time, we studied the post-discharge evolution of reactive species in PAW based on a system-level model reported previously. Three common storage conditions for PAW were considered within the post-discharge time of 14 d: (I) leaving the residual gas and PAW in the sealed reactor; (II) leaving PAW in the open air; (III) sealing the container of PAW. In comparison, storage condition III was the best condition to preserve the long-lived species including H2O2 and HNO2/, whereas storage condition I was the best method to preserve the short-lived species including OH, HO2 and ONOOH/ONOO−. It suggests that the gas–liquid mass transfer plays an important role in the evolution of reactive species. We also found that O2NOOH/O2NOO− had an almost one order of magnitude higher concentration and a longer residue time than those of ONOOH/ONOO−. This distinction suggests that the biological effect of O2NOOH/O2NOO− may be important. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
34. A pilot study on the vacuum degree online detection of vacuum interrupter using laser-induced breakdown spectroscopy.
- Author
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X H Wang, H Yuan, D X Liu, A J Yang, P Liu, L Gao, H B Ding, W T Wang, and M Z Rong
- Subjects
VACUUM circuit breakers ,SPECTRUM analysis ,LASER-induced breakdown spectroscopy ,ELECTROMAGNETIC interference ,LASER power transmission ,FLUCTUATIONS (Physics) - Abstract
Vacuum degree online detection of vacuum interrupter has been a great challenge for decades. In this letter, a novel approach based on laser induced breakdown spectroscopy (LIBS) was proposed to solve this tough problem, which is suitable for non-intrusive, electro-magnetic interference free and remote detection. The spectral lines of Cu, H, N and O elements from the interrupter shield were detected for a large gas pressure range from p = 1 × 10
−3 Pa to 1 × 105 Pa. It was found that the spectral intensities of O and H increase monotonically with gas pressure, in contrast the spectral intensity of Cu first decreases slightly and then increases. Their intensity ratios, especially for that of Cu to O, change dramatically and monotonically with the gas pressure when p ⩽ 0.1 Pa, indicating that they can be used for determining the vacuum degree values. Spectral ratio method fundamentally reduces the influences of the possible variation in measuring distance and the laser power fluctuation, making LIBS a promising method for vacuum degree online detection of vacuum interrupters. [ABSTRACT FROM AUTHOR]- Published
- 2016
- Full Text
- View/download PDF
35. Physicochemical processes in the indirect interaction between surface air plasma and deionized water.
- Author
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Z C Liu, D X Liu, C Chen, D Li, A J Yang, M Z Rong, H L Chen, and M G Kong
- Subjects
- *
ENVIRONMENTAL remediation , *REACTIVE oxygen species , *NITROGEN , *NITRITES , *NITRATES - Abstract
One of the most central scientific questions for plasma applications in healthcare and environmental remediation is the chemical identity and the dose profile of plasma-induced reactive oxygen and nitrogen species (ROS/RNS) that can act on an object inside a liquid. A logical focus is on aqueous physicochemical processes near a sample with a direct link to their upstream gaseous processes in the plasma region and a separation gap from the liquid bulk. Here, a system-level modeling framework is developed for indirect interactions of surface air plasma and a deionized water bulk and its predictions are found to be in good agreement with the measurement of gas-phase ozone and aqueous long-living ROS/RNS concentrations. The plasma region is described with a global model, whereas the air gap and the liquid region are simulated with a 1D fluid model. All three regions are treated as one integrated entity and computed simultaneously. With experimental validation, the system-level modeling shows that the dominant aqueous ROS/RNS are long-living species (e.g. H2O2aq, O3aq, nitrite/nitrate, H+aq). While most short-living gaseous species could hardly survive their passage to the liquid, aqueous short-living ROS/RNS are generated in situ through reactions among long-living plasma species and with water molecules. This plasma-mediated remote production of aqueous ROS/RNS is important for the abundance of aqueous HO2aq, HO3aq, OHaq and aq as well as NO2aq and NO3aq. Aqueous plasma chemistry offers a novel and significant pathway to activate a given biological outcome, as exemplified here for bacterial deactivation in plasma-activated water. Additional factors that may synergistically broaden the usefulness of aqueous plasma chemistry include an electric field by aqueous ions and liquid acidification. The system-modeling framework will be useful in assisting designs and analyses of future investigations of plasma-liquid and plasma–cell interactions. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
36. Off-axis chemical crosstalk in an atmospheric pressure microplasma jet array.
- Author
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P P Sun, H L Chen, S-J Park, J G Eden, D X Liu, and M G Kong
- Subjects
ATMOSPHERIC pressure ,MICROPLASMAS ,LOW temperature plasmas ,HELIUM ,CHEMICAL reactions - Abstract
Developing arrays of parallel microplasma jets is an attractive route to scaling the area available for the treatment of surfaces with low temperature plasma. Increasing the packing density of the arrays may lead to electrical and gas kinetic jet–jet interactions, but previous work has focused almost exclusively on electrostatic coupling between the jets. Chemical interactions (‘crosstalk’) have received considerably less attention. We report here the results of an investigation of chemical crosstalk in 4 × 4 arrays of microplasma jets, produced in flowing helium at atmospheric pressure. Oxidation damage to an Escherichia coli lawn serves as a diagnostic of the spatial distribution of molecular radicals and other reactive plasma species, produced at the plasma jet/ambient background interface or between the jets, and incident on the surface. Spatial maps of bacterial inactivation by the microplasma jet array for 20 s show the destruction of E. coli at distances as large as 2.7 jet diameter from the nearest plasma perimeter, compared to typically less than 0.5 jet diameter in the single jet case. Extending to 30 s of plasma exposure leads to destruction of the entire bacterial sample. This ‘action at a distance’ effect, the production of long-lived species such as O, O
2 (a1 Δg ) and O3 that are responsible for bacterial deactivation, peaks along a line bisecting columns and rows of plasma jets. The data illustrate the synergistic effect of adjacent jets on off-axis formation of reactive species, and show that the chemical and biological impact of an array cannot be inferred from the plasma chemistry of a single jet. [ABSTRACT FROM AUTHOR]- Published
- 2015
- Full Text
- View/download PDF
37. Contrasting characteristics of sub-microsecond pulsed atmospheric air and atmospheric pressure helium-oxygen glow discharges.
- Author
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J L Walsh, D X Liu, F Iza, M Z Rong, and M G Kong
- Subjects
- *
ATMOSPHERIC pressure , *HELIUM , *OXYGEN , *GLOW discharges , *LOW temperatures , *PLASMA gases , *ION recombination , *COLLISIONAL excitation - Abstract
Glow discharges in air are often considered to be the ultimate low-temperature atmospheric pressure plasmas for numerous chamber-free applications. This is due to the ubiquitous presence of air and the perceived abundance of reactive oxygen and nitrogen species in air plasmas. In this paper, sub-microsecond pulsed atmospheric air plasmas are shown to produce a low concentration of excited oxygen atoms but an abundance of excited nitrogen species, UV photons and ozone molecules. This contrasts sharply with the efficient production of excited oxygen atoms in comparable helium-oxygen discharges. Relevant reaction chemistry analysed with a global model suggests that collisional excitation of O2 by helium metastables is significantly more efficient than electron dissociative excitation of O2, electron excitation of O and ion-ion recombination. These results suggest different practical uses of the two oxygen-containing atmospheric discharges, with air plasmas being well suited for nitrogen and UV based chemistry and He-O2 plasmas for excited atomic oxygen based chemistry. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
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