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Tiller number is a key yield attributing trait in sugarcane, which decides the number of millable canes at harvest. The process of tillering (tiller bud initiation and outgrowth) is controlled by both genetic and environmental conditions. Deciphering the molecular mechanisms controlling the processes is critical to improve tillering ability in sugarcane. Phenotyping of the first tiller node at 20 to 40 days after planting (DAP) showed early meristem initiation and tiller outgrowth among the high tillering genotypes compared to the low and medium tillering genotypes. Quantitative proteomics analysis of the tiller node tissues from a high (Co 86032) and low tillering genotype (Co 99004) identified 2,867 significantly differentially abundant proteins (-1 ≤ Log2 FC ≥ 1, q ≤ 0.05). Significant enrichment of pathways involved in photosynthesis, carbohydrate metabolism, C-type lectin receptor signaling and linoleic acid metabolism with a significantly higher abundance of proteins was observed in Co 86032. Proteins specifically involved in sugar transport, nitrogen metabolism, cell wall organization, cytokinin signaling, and kinases had significantly higher abundance while proteins for strigolactone, auxin, abscisic acid, and gibberellic acid, involved in the negative regulation of tillering, showed significant lower abundance in tiller nodes of Co 86032 compared to Co 99004. Gene expression of selected candidate proteins (ShMAX4, ShMAX3, ShTB1, ShSWEET1A, and auxin efflux carrier protein) was found to be consistent with the differential protein abundance quantified among the high and tillering sugarcane genotypes. This study provides clues to the genetic basis of tillering by identifying candidate genes involved in tiller initiation and development for targeted genetic improvement of sugarcane plant architecture and cane yield. [ABSTRACT FROM AUTHOR]

Ethylene is a plant hormone involved in many aspects of plant growth and development as well as responses to stress. The role of ethylene in plant-microbe interactions has been explored from the perspective of plants. However, only a small number of studies have examined the role of ethylene in microbes. We demonstrated that Azospirillum brasilense contains a functional ethylene receptor that we call Azospirillum Ethylene Response1 (AzoEtr1) after the nomenclature used in plants. AzoEtr1 directly binds ethylene with high affinity. Treating cells with ethylene or disrupting the receptor reduces biofilm formation and colonization of plant root surfaces. Additionally, RNA sequencing and untargeted metabolomics showed that ethylene causes wide-spread metabolic changes that affect carbon and nitrogen metabolism. One result is the accumulation of poly-hydroxybutyrate. Our data suggests a model in which ethylene from host plants alters the density of colonization by A. brasilense and re-wires its metabolism, suggesting that the bacterium implements an adaptation program upon sensing ethylene. These data provide potential new targets to regulate beneficial plant-microbe interactions. Author summary: Food production is becoming a major concern because of reduced arable land from an increased human population and climate change. Application of beneficial microbes to plants is being explored to increase crop productivity. However, this approach often underperforms in field conditions. To better sustain beneficial plant-microbe associations, we must understand what controls the formation and maintenance of these associations. Azospirillum brasilense is a soil bacterium that associates with plant roots and is used as a bioinoculant to boost plant growth and stress tolerance. We provide evidence that A. brasilense contains a functional receptor for the gaseous plant hormone ethylene. Application of ethylene regulates biofilm formation and root colonization of several plant hosts by A. brasilense. Additionally, ethylene causes wide-spread metabolic changes in A. brasilense. This is the first study to demonstrate that a beneficial soil bacterium contains a functional ethylene receptor. These findings suggest that ethylene may act as a cross-kingdom signaling molecule from plants to bacteria that contain these ethylene receptors thereby identifying a potential target to potentially improve beneficial plant-microbe interactions. [ABSTRACT FROM AUTHOR]

The rise of direct-seeded rice cultivation as a suitable alternative to transplanted puddled rice depends on developing genotypes with high seedling emergence under deep sown conditions. Two rice genotypes (IRGC 128442 and PR126) were screened for contrasting seedling emergence and subjected to high-throughput RNA sequencing under varying sowing depths (4 cm and 10 cm) and time intervals (5, 10, and 15 days after sowing). On average, a total of 2702 differentially expressed genes were identified across twelve inter- and intra-genotypic pairwise differential expression analyses, with a false discovery rate ≤ 0.05 and log2 fold change ≥ ± 2. The DEGs specifically showing differential expression under deep-sowing stress were prioritized and further refined based on their corresponding gene ontology terms, gene set enrichment analysis and KEGG and plant reactome pathway. From this pool of DEGs, 24 genes were validated using qRT-PCR. Among these, two genes (LOC_Os04g51460 and LOC_Os02g45450) contribute to cell wall remodelling and membrane stability, while three genes (LOC_Os04g48484, LOC_Os06g04399, and LOC_Os07g15440) play key roles in mitigating abiotic stress. Transcriptional regulators (LOC_Os06g33940 and LOC_Os01g45730) drive stress responses and growth. Notably, high fold changes in LOC_Os03g22720 and LOC_Os07g01960 underscore their importance in early stress responses and metabolic adjustments. The transcriptome analysis also highlighted the role of 29 heat shock proteins in response to deep sowing stress. Differential expression of key components in the abscisic acid (ABA)-mediated signalling pathway such as OsABI5 (LOC_Os01g64000), phosphatase 2C-like (PP2C) (LOC_Os09g15670) and OsPYL (LOC_Os06g36670) indicated downregulation of ABA signalling in the genotype IRGC 128442. Additionally, a role for miRNA-mediated regulation of auxin response factors was hypothesized in seedling emergence regulation. The study brings us closer to understanding the genetic control of seedling emergence under deep sown conditions. Functional validation of the key candidate genes and pathways could provide new targets for genetic improvement, potentially contributing to the development of rice cultivars optimized for direct-seeded rice cultivation. [ABSTRACT FROM AUTHOR]

Peptide hormones are defined as small secreted polypeptide-based intercellular communication signal molecules. Such peptide hormones are encoded by nuclear genes, and often go through proteolytic processing of preproproteins and post-translational modifications. Most peptide hormones are secreted out of the cell to interact with membrane-associated receptors in neighboring cells, and subsequently activate signal transductions, leading to changes in gene expression and cellular responses. Since the discovery of the first plant peptide hormone, systemin, in tomato in 1991, putative peptide hormones have continuously been identified in different plant species, showing their importance in both short- and long-range signal transductions. The roles of peptide hormones are implicated in, but not limited to, processes such as self-incompatibility, pollination, fertilization, embryogenesis, endosperm development, stem cell regulation, plant architecture, tissue differentiation, organogenesis, dehiscence, senescence, plant-pathogen and plant-insect interactions, and stress responses. This article, collectively written by researchers in this field, aims to provide a general overview for the discoveries, functions, chemical natures, transcriptional regulations, and post-translational modifications of peptide hormones in plants. We also updated recent discoveries in receptor kinases underlying the peptide hormone sensing and down-stream signal pathways. Future prospective and challenges will also be discussed at the end of the article. [ABSTRACT FROM AUTHOR]

Pollen development and germination play a crucial role in the sexual reproduction of plants. This study analysis of transcriptional dynamics of foxtail millet pollen with other tissues and organs (ovule, glume, seedling and root) through RNA-sequencing revealed that a total of 940 genes were up-regulated in foxtail millet pollen. Based on this, we analyzed the genes involved in pollen tube growth of receptor kinases and small peptides, calcium signaling, small G proteins, vesicle transport, cytoskeleton, cell wall correlation, and transcription factors that are up-regulated in pollen. At the same time, we compared the gene expression of foxtail millet pollen and mature anthers, and found that a large number of transcription factors were specific expressed in mature anthers. In addition, we verified the accuracy of the transcriptome data using RT-qPCR. Finally, employed the antisense Oligonucleotide (as-ODN) system found that inhibiting SiPME67 expression would cause abnormal growth of pollen tube subapical. In summary, we preliminarily analyzed the genes that were up-regulated in foxtail millet pollen, which provided a reference for understanding the male sterility mechanism of foxtail millet in the future and theoretical basis for creating new male sterility lines. [ABSTRACT FROM AUTHOR]

Background: Chitinases (CHIs) are glycosidases that degrade chitin, playing critical roles in plant responses to both abiotic and biotic stress. Despite their importance, the CHI family's systematic analysis and evolutionary pattern in F. tataricum (Tartary buckwheat) yet to be explored. Results: This study analyzed their phylogenetic relationships, conserved motifs, gene structures, syntenic relationships, physiological functions, and biochemical properties. This research identified 26 FtCHIs and examined their expression patterns under different salt stress conditions and across various tissues. Differential expression analysis revealed a significant upregulation of multiple FtCHIs in response to salt stress, which RT-qPCR further validated. Additionally, subcellular localization experiments demonstrated that Ft_chitinaseIV-2 is localized in vacuoles. The results of transient·transformation showed that·overexpression of Ft_chitinaseIV-2 could·enhance the salt tolerance of plants. Conclusions: The findings provide new insights into the role of CHIs in stress tolerance and lay the groundwork for future research on the functional characterization of FtCHIs. Understanding the molecular mechanisms of CHI-mediated stress responses could contribute to developing stress-resistant crops. [ABSTRACT FROM AUTHOR]

Plants express an array of receptor-like kinases (RLKs) to control development and communicate with their environment. Many RLKs are uncharacterized and some of them are expected to regulate plant responses to plant growth-promoting rhizobacteria (PGPR). Despite documented effects induced by Caulobacter RHG1, the underlying signaling pathways and the involved RLKs remain uncharted. Through a targeted RLK mutant screening, we aimed to decipher the receptors that steer the Caulobacter RHG1-induced growth promotion in Arabidopsis thaliana. We identified four RLKs that are pivotal in the RHG1-Arabidopsis interaction, including the coreceptors SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1 (SERK1) and BRASSINOSTEROID INSENSITIVE 1-ASSOCIATED KINASE 1 (BAK1/SERK3), which act redundantly in the RHG1-Arabidopsis interaction, possibly by interplaying with the unknown RLK AT3G28040 and the immunity-related ELONGATION FACTOR-TU RECEPTOR (EFR). These results shed new light on the molecular dynamics orchestrating plant responses to PGPR, and concurrently contribute a crucial piece to the intricate puzzle of RLK interactions. Key policy highlights Four RLKs; BAK1, SERK1, EFR, and AT3G28040 (RRHG) are involved in the RHG1-Arabidopsis interaction. BAK1 and SERK1, two well-described co-receptors, act redundantly and play a pivotal role in the RHG1-driven growth promotion, possibly by interplaying with the unknown RLK AT3G28040 and the immunity-related RLK EFR. Most known development – and immunity-related RLKs barely influence RHG1-driven plant growth promotion in Arabidopsis. [ABSTRACT FROM AUTHOR]

Plant architecture is a main determinate of crop yield, and lateral branching significantly influences the number of inflorescences and seeds. The mechanism of axillary bud initiation remains unclear. This work aimed to examine how miRNAs regulate axillary bud initiation. By constructing a small RNA library and screening a mutant population, we revealed the initiation of axillary buds is specifically induced by miR394 and repressed by its target, LEAF CURLING RESPONSIVENESS (LCR). Using promoter-driven fluorescent tags and in situ hybridization, we showed that miR394 is localized in the center of the leaf axil where AMs are initiated. Through molecular and genetic research, we revealed that miR394/LCR may regulate REVOLUTA (REV) and SHOOT MERISTEMLESS (STM) to establish the axillary meristem. Immunoprecipitation-mass spectrometry studies revealed that LCR, as an F-box protein, may interact with TOPLESS (TPL) proteins and participate in ubiquitinated protein degradation. Our results reveal an important mechanism by which the miR394-regulated LCR accelerates the degradation of TPL to precisely modulate axillary bud initiation. Liu et al. show that microRNA394 is expressed in shoot apex and strictly inhibits LCR accumulation in leaf axils, to attenuate LCR mediated TPL degradation and activate the REV and STM pathway, which is essential for axillary meristem initiation in Arabidopsis. [ABSTRACT FROM AUTHOR]

Walnut (Juglans spp.) trees hold immense significance in both economic and ecological contexts within agri-horticultural ecosystems. The comprehension of the intricate mechanisms underpinning walnut growth and development stands as a pivotal endeavor, essential for advancing sustainable yield practices. This comprehensive review delves into the multifaceted factors that contribute to the growth and development of walnuts, encompassing hormonal, biochemical, and genetic dimensions. Notably, hormones such as gibberellic acids (GAs) and sugars assume pivotal roles in the initiation and maturation of walnut flowers, with specific investigations demonstrating that the application of GAs has the capacity to augment male flower counts. The levels of endogenous auxins and gibberellins exhibit variations across distinct phases of walnut development, with the highest concentrations observed in young tissues. The molecular underpinnings of walnut growth and development involve a complex interplay of genetic regulation, hormonal dynamics, and environmental factors. Distinct sets of genes exhibit activation at discrete developmental stages, thereby influencing fundamental processes such as cell division, differentiation, and food reserve metabolism. Several key regulatory genes, including ACC, ASMT, SAD, FAD, SOC, and TFL1, emerge as pivotal orchestrators, steering essential processes encompassing cell division, differentiation, flowering, and fruit development. Conclusively, this article provides a detailed exploration of the diverse aspects of walnut growth and development, from genetic regulation to hormonal and biochemical processes. This will provide a valuable resource for researchers, horticulturalists, and biotechnologists aiming to improve walnut productivity and resilience in the face of changing environmental conditions. [ABSTRACT FROM AUTHOR]

Ethylene management and manipulating storage conditions are crucial elements that impact the postharvest quality of apple fruit. This study demonstrated the optimal approach for preserving the quality of 'Cripps Pink' apple fruit during storage by minimizing ethylene production and action, respiration rate, physiological loss of weight (PLW), and textural changes. Ethylene antagonist treatment had the greatest impact on suppressing ethylene and respiration peaks, while storage duration notably influenced fruit firmness and PLW. Fumigation treatment with 1-methylcyclopropene (MCP), 1H-cyclopropabenzene (BC), and 1H-cyclopropa[b]naphthalene (NC) effectively reduced ethylene and respiration peaks. Storage conditions (cold, controlled atmosphere, and photocatalytic oxidation) affected ethylene production and respiration, with ozonized storage showing higher rates. Prolonged storage led to increased PLW, ethylene production, and decreased fruit firmness. The most effective treatment combination for ethylene action antagonism and maintaining fruit quality was MCP treatment in ozonized cold storage for 120 d. [ABSTRACT FROM AUTHOR]

Sinapis alba genome has been utilized as a donor for abiotic and biotic stress tolerance, yet there seems to be a gap in exploring its potential contribution to yield-related traits. The greater number of lateral branches in Brassica plants provides new sites for bearing siliquae and emphasizes their profound impact on yield potential. The present investigation involves the morphological characterization of 94 backcross introgression lines (BCILs) over two consecutive crop seasons, coupled with genotyping by 277 S. alba genome-specific monoallelic microsatellite markers to decipher the genetic loci contributing to higher branching number traits. The results revealed significant QTLs governing primary (PB) and secondary branching (SB). In CS-I, two QTLs linked to PB collectively explained 46.50% of the phenotypic variance (PVE), exhibiting positive additive effects, signifying their contribution to increased branch numbers in BCILs. Two QTLs associated with SB were also identified, with LODs of 5.07 and 4.21 contributing 22.55 and 17.90%, respectively, to the PVE. During the CS-II, one QTL was identified for PB, explaining 28.04% of the PVE at a 20.97 LOD value, and one major QTL for SB was identified (27.52% of the PVE). Moreover, we also identified 40 potential genes within the QTL regions, with sixteen genes homologous to the ANT, MAX2, PNH, RAX2, SEU, CRE1, and RAMOSUS1 of Arabidopsis and pea, and a total of nine unknown genes with a role in branching that were introgressed from S. alba to B. juncea. This is the first study to identify introgressed candidate genes involved in Brassica branching. [ABSTRACT FROM AUTHOR]

Small chemical molecules are attractive agents for improving the plant processes associated with plant growth and stress tolerance. Recent advances in chemical biology and structure-assisted drug discovery approaches have opened up new avenues in plant biology to discover new drug-like molecules to improve plant processes for sustained food production. Several compounds targeting phytohormone biosynthesis or signalling cascades were designed to alter plant physiological mechanisms. Altering Abscisic acid synthesis and its signalling process can improve drought tolerance, and the processes targeted are reversible. Molecules targeting cytokinin, Auxin, and gibberellic acid regulate plant physiological processes and can potentially improve plant growth, biomass and productivity. The potential of molecules may be exploited as agrochemicals to enhance agricultural productivity. The discovery of small molecules provides new avenues to improve crop production in changing climatic conditions and the nutritional quality of foods. We present the rational combinations of small molecules with inhibitory and co-stimulatory effects and discuss future opportunities in this field. [ABSTRACT FROM AUTHOR]

Fusarium wilt, caused by Fusarium oxysporum f. sp. fordiis in Vernicia fordii, manifests as severe symptoms that significantly reduce global tung oil yield. However, the molecular-mechanisms of the Vernicia-Fusarium interaction are yet to be fully elucidated. Here, we cloned VfLRR-RLK1 from tung tree roots, which contained 1134 bp, encoding 378 AA. To further analyze VfLRR-RLK1 function in resistance to Fusarium wilt, we obtained stable T4-generation transgenic Arabidopsis thaliana and tung tree VfLRR-RLK1 virus-induced gene silencing (VIGS) RNAi plants. A. thaliana plants overexpressing VfLRR-RLK1 exhibited more robust root development and markedly increased Fusarium wilt disease resistance. In response to Fusarium wilt stress, transgenic A. thaliana exhibited increased catalase (CAT) and superoxide dismutase (SOD) enzyme activities, while showing reduced O2− and hydrogen peroxide (H2O2) accumulation. The findings suggest that VfLRR-RLK1 may diminish plant reactive oxygen species (ROS) levels and foster root development by activating the ROS antioxidant scavenging system during plant Pattern Triggered Immunity responses, enhancing resistance to Fusarium wilt. The study on the function of VfLRR-RLK1 is crucial in breeding programs aimed at developing tung tree resistant to Fusarium wilt, and lays the groundwork for more effective disease management strategies and the cultivation of tung tree varieties with enhanced resistance to this disease. [ABSTRACT FROM AUTHOR]

Receptor protein kinases (RPKs) critically provide the basic infrastructure to sense, perceive, and conduct the signalling events at the cell surface of organisms. The importance of LRR-RLKs has been well studied in plants, but much less information has been reported in oomycetes. In this work, we have silenced the PcLRR-RK3 and characterised its functional importance in Phytophthora capsici. PcLRR-RK3 was predicted to encode signal peptides, leucine-rich repeats, transmembrane, and kinase domains. PcLRR-RK3-silenced transformants showed impaired colony growth, decreased deformed sporangia, and reduced zoospores count. The mycelium of silenced transformants did not penetrate within the host tissues and showed defects in the pathogenicity of P. capsici. Interestingly, gene silencing also weakens the ability of zoospores germination and penetration into host tissues and fails to produce necrotic lesions. Furthermore, PcLRR-RK3 localisation was found to be the plasma membrane of the cell. Altogether, our results revealed that PcLRR-RK3 was required for the regulation of vegetative growth, zoospores penetration, and establishment into host leaf tissues. [ABSTRACT FROM AUTHOR]

Key message: Arabidopsis CPR5 is involved in regulation of ethylene signaling via two different ways: interacting with the ETR1 N-terminal domains, and controlling nucleocytoplasmic transport of ethylene-related mRNAs. The ETR1 receptor plays a predominant role in ethylene signaling in Arabidopsis thaliana. Previous studies showed that both RTE1 and CPR5 can directly bind to the ETR1 receptor and regulate ethylene signaling. RTE1 was suggested to promote the ETR1 receptor signaling by influencing its conformation, but little is known about the regulatory mechanism of CPR5 in ethylene signaling. In this study, we presented the data showing that both RTE1 and CPR5 bound to the N-terminal domains of ETR1, and regulated ethylene signaling via the ethylene receptor. On the other hand, the research provided evidence indicating that CPR5 could act as a nucleoporin to regulate the ethylene-related mRNAs export out of the nucleus, while RTE1 or its homolog (RTH) had no effect on the nucleocytoplasmic transport of mRNAs. Nuclear qRT-PCR analysis and poly(A)-mRNA in situ hybridization showed that defect of CPR5 restricted nucleocytoplasmic transport of mRNAs. These results advance our understanding of the regulatory mechanism of CPR5 in ethylene signaling. [ABSTRACT FROM AUTHOR]

Background: Astragalus cicer L. is a perennial rhizomatous legume forage known for its quality, high biomass yield, and strong tolerance to saline-alkaline soils. Soil salinization is a widespread environmental pressure. To use A. cicer L. more scientifically and environmentally in agriculture and ecosystems, it is highly important to study the molecular response mechanism of A. cicer L. to salt stress. Results: In this study, we used RNA-seq technology and weighted gene coexpression network analysis (WGCNA) were performed. The results showed 4 key modules were closely related to the physiological response of A. cicer. L. to salt stress. The differentially expressed genes (DEGs) of key modules were mapped into the KEGG database, and found that the most abundant pathways were the plant hormone signal transduction pathway and carbon metabolism pathway. The potential regulatory networks of the cytokinin signal transduction pathway, the ethylene signal transduction pathway, and carbon metabolism related pathways were constructed according to the expression pathways of the DEGs. Seven hub genes in the key modules were selected and distributed among these pathways. They may involved in the positive regulation of cytokinin signaling and carbon metabolism in plant leaves, but limited the positive expression of ethylene signaling. Thus endowing the plant with salt tolerance in the early stage of salt stress. Conclusions: Based on the phenotypic and physiological responses of A. cicer L. to salt stress, this study constructed the gene coexpression network of potential regulation to salt stress in key modules, which provided a new reference for exploring the response mechanism of legumes to abiotic stress. [ABSTRACT FROM AUTHOR]

As a Brassica crop, Brassica napus typically has single flowers that contain four petals. The double-flower phenotype of rapeseed has been a desirable trait in China because of its potential commercial value in ornamental tourism. However, few double-flowered germplasms have been documented in B. napus, and knowledge of the underlying genes is limited. Here, B. napus D376 was characterized as a double-flowered strain that presented an average of 10.92 ± 1.40 petals and other normal floral organs. F1, F2 and BC1 populations were constructed by crossing D376 with a single-flowered line reciprocally. Genetic analysis revealed that the double-flower trait was a recessive trait controlled by multiple genes. To identify the key genes controlling the double-flower trait, bulk segregant analysis sequencing (BSA-seq) and RNA-seq analyses were conducted on F2 individual bulks with opposite extreme phenotypes. Through BSA-seq, one candidate interval was mapped at the region of chromosome C05: 14.56–16.17 Mb. GO and KEGG enrichment analyses revealed that the DEGs were significantly enriched in carbohydrate metabolic processes, notably starch and sucrose metabolism. Interestingly, five and thirty-six DEGs associated with floral development were significantly up- and down-regulated, respectively, in the double-flowered plants. A combined analysis of BSA-seq and RNA-seq data revealed that five genes were candidates associated with the double flower trait, and BnaC05.ERS2 was the most promising gene. These findings provide novel insights into the breeding of double-flowered varieties and lay a theoretical foundation for unveiling the molecular mechanisms of floral development in B. napus. [ABSTRACT FROM AUTHOR]

Background: As an important global agricultural cash crop, melon has a long history of cultivation and a wide planting area. The physiological metabolism of melon after harvest is relatively strong; if not properly stored, melon is easily invaded by external pathogens during transportation, resulting in economic losses and greatly limiting its production, development and market supply. Therefore, the storage and freshness of melon are the main challenges in realizing the annual supply of melon, so postharvest storage has received increasing amounts of attention from researchers. Methods: This study used academic, PubMed, and Web of Science resources to retrieve keywords related to postharvest storage and melon quality; read, refined, classified, and sorted the retrieved literature; sorted and summarized the relevant research results; and finally completed this article. Results: This article reviews the mechanism and effects of physical, chemical and biological preservation techniques on the sensory quality, compound contents and respiratory physiological activities of different varieties of melon fruits. When maintaining normal metabolism and not producing physiological disorders, melon inhibits cell wall metabolism, reactive oxygen species metabolism and the ethylene biosynthesis pathway, etc., to the greatest extent during postharvest storage, thereby reducing the material consumption of fruits, delaying the ripening and senescence process, and prolonging the postharvest life and shelf life. Conclusion: The literature provides a theoretical basis for postharvest preservation technology in the melon industry in the future and provides corresponding guidance for the development of the melon industry. [ABSTRACT FROM AUTHOR]

Background: Liriodendron chinense is susceptible to extinction due to the increasing severity of abiotic stresses resulting from global climate change, consequently impacting its growth, development, and geographic distribution. However, the L. chinense remains pivotal in both socio-economic and ecological realms. The LRR-RLK (leucine-rich repeat receptor-like protein kinase) genes, constituting a substantial cluster of receptor-like kinases in plants, are crucial for plant growth and stress regulation and are unexplored in the L. chinense. Result: 233 LchiLRR-RLK genes were discovered, unevenly distributed across 17 chromosomes and 24 contigs. Among these, 67 pairs of paralogous genes demonstrated gene linkages, facilitating the expansion of the LchiLRR-RLK gene family through tandem (35.82%) and segmental (64.18%) duplications. The synonymous and nonsynonymous ratios showed that the LchiLRR-RLK genes underwent a purifying or stabilizing selection during evolution. Investigations in the conserved domain and protein structures revealed that the LchiLRR-RLKs are highly conserved, carrying conserved protein kinase and leucine-rich repeat-like domians that promote clustering in different groups implicating gene evolutionary conservation. A deeper analysis of LchiLRR-RLK full protein sequences phylogeny showed 13 groups with a common ancestor protein. Interspecies gene collinearity showed more orthologous gene pairs between L. chinense and P. trichocarpa, suggesting various similar biological functions between the two plant species. Analysis of the functional roles of the LchiLRR-RLK genes using the qPCR demonstrated that they are involved in cold, heat, and salt stress regulation, especially, members of subgroups VIII, III, and Xa. Conclusion: Conclusively, the LRR-RLK genes are conserved in L. chinense and function to regulate the temperature and salt stresses, and this research provides new insights into understanding LchiLRR-RLK genes and their regulatory effects in abiotic stresses. [ABSTRACT FROM AUTHOR]

Fruit shape is one of the important traits for quality evaluation, classification, and market grading of horticultural crops. In order to explore the genes regulating pear fruit shape formation, pear varieties 'Huangguan' and 'Korla Fragrant Pear' with significant differences in fruit shape were selected as experimental materials. Through morphological observation, measurement of fruit longitudinal diameter and fruit transverse diameter, and fruit shape index analysis of the pear fruit growth and development period, the formation of pear fruit shape during the young fruit period was preliminarily determined. By analyzing the transcriptome data of 'Huangguan' and 'Korla Fragrant Pear' at the young fruit stage, 8993 differentially expressed genes were obtained, and the majority of the genes were annotated to the plant hormone signaling pathway, among which gibberellin-related genes accounted for 13.4%. Spraying GA3 at the full-bloom stage can significantly prolong the shape of oriental pear. The results of qRT-PCR showed that the expression level of the gibberellin metabolic pathway gene PbGA2ox11 in 'Huangguan' was significantly higher than that in 'Korla Fragrant Pear'. GA3 treatment inhibited the expression of this gene in 'Korla Fragrant Pear', while PP333 promoted the expression. It was speculated that PbGA2ox11 was most likely to regulate the shape of pear fruit by regulating gibberellin metabolism. This study provides a new method for studying fruit shape via the analysis of the gibberellin synthesis metabolic pathway, new resources for the rational use of plant growth regulators, and theoretical and technical support for cultivating excellent fruit shape. [ABSTRACT FROM AUTHOR]

The investigation into cysteine-rich receptor-like kinases (CRLKs) holds pivotal significance as these conserved, upstream signalling molecules intricately regulate fundamental biological processes such as plant growth, development and stress adaptation. This study undertakes a comprehensive characterisation of CRLKs in Solanum tuberosum (potato), a staple food crop of immense economic importance. Employing comparative genomics and evolutionary analyses, we identified 10 distinct CRLK genes in potato. Further categorisation into three major groups based on sequence similarity was performed. Each CRLK member in potato was systematically named according to its chromosomal position. Multiple sequence alignment and phylogenetic analyses unveiled conserved gene structures and motifs within the same groups. The genomic distribution of CRLKs was observed across Chromosomes 2–5, 8 and 12. Gene duplication analysis highlighted a noteworthy trend, with most gene pairs exhibiting a Ka/Ks ratio greater than one, indicating positive selection of StCRLKs in potato. Salt and drought stresses significantly impacted peroxidase and catalase activities in potato seedlings. The presence of diverse cis -regulatory elements, including hormone-responsive elements, underscored their involvement in myriad biotic and abiotic stress responses. Interestingly, interactions between the phytohormone auxin and CRLK proteins unveiled a potential auxin-mediated regulatory mechanism. A holistic approach combining transcriptomics and quantitative PCR validation identified StCRLK9 as a potential candidate involved in plant response to heat, salt and drought stresses. This study lays a robust foundation for future research on the functional roles of the CRLK gene family in potatoes, offering valuable insights into their diverse regulatory mechanisms and potential applications in stress management. Potato (Solanum tuberosum), the third-largest staple food crop, faces a major food security threat from environmental factors including salinity, temperature fluctuations and drought. We characterise the cysteine-rich receptor-like kinase (CRLK) gene family in potato, shedding light on its molecular mechanism in the complex interplay between plants and environmental stressors. The gene StCRLK9 may be involved in various abiotic stress responses. This establishes the groundwork for further investigations into the role of the potato CRLKs gene family in engineering climate resilient future crop plants. This article belongs to the Collection Functional Genomics for Developing Climate Resilient Crops. [ABSTRACT FROM AUTHOR]

Cysteine-rich receptor-like kinases (CRKs) play many important roles during plant development, including defense responses under both biotic and abiotic stress, reactive oxygen species (ROS) homeostasis, callose deposition and programmed cell death (PCD). However, there are few studies on the involvement of the CRK family in male sterility due to heat stress in wheat (Triticum aestivum L.). In this study, a genome-wide characterization of the CRK family was performed to investigate the structural and functional attributes of the wheat CRKs in anther sterility caused by heat stress. A total of 95 CRK genes were unevenly distributed on 18 chromosomes, with the most genes distributed on chromosome 2B. Paralogous homologous genes with Ka/Ks ratios less than 1 may have undergone strong purifying selection during evolution and are more functionally conserved. The collinearity analysis results of CRK genes showed that wheat and Arabidopsis (A. thaliana), foxtail millet, Brachypodium distachyon (B. distachyon), and rice have three, 12, 15, and 11 pairs of orthologous genes, respectively. In addition, the results of the network interactions of genes and miRNAs showed that five miRNAs were in the hub of the interactions map, namely tae-miR9657b-5p, tae-miR9780, tae-miR9676-5p, tae-miR164, and tae-miR531. Furthermore, qRT-PCR validation of the six TaCRK genes showed that they play key roles in the development of the mononuclear stage anthers, as all six genes were expressed at highly significant levels in heat-stressed male sterile mononuclear stage anthers compared to normal anthers. We hypothesized that the TaCRK gene is significant in the process of high-temperature-induced sterility in wheat based on the combination of anther phenotypes, paraffin sections, and qRT-PCR data. These results improve our understanding of their relationship. [ABSTRACT FROM AUTHOR]

Saussurea inversa is one of the Tibetan medicine with developed aerenchyma. In this study, we investigated the function of the ShCTR1 gene related to the formation of aerenchyma. The study of the occurrence and formation of aerenchyma in S. inversa has certain theoretical significance in revealing the special mechanism of alpine plants adapting to the environment. The results of yeast two-hybrid experiments showed that S. inversa ShCTR1 interacted with the ShRBOH1, which is a key producer of reactive oxygen species (ROS), and it was hypothesized that ShCTR1 regulation of aerenchyma formation in S. inversa mainly mediated by ROS. Aerenchyma induction and inhibition experiments were carried out on S. inversa seedlings, it was shown that ROS inducer (AT) and Ethene (ETH) induced the formation of aerenchyma in S. inversa well in roots, stems, and leaves, and Ethylene inhibitor (1-MCP) and ROS inhibitor DPI (diphenylene iodonium) inhibited the formation of aerenchyma of S. inversa in different degrees, which proved that ROS and ethylene (ET) were positively correlated with the formation of aerenchyma. Meanwhile, AT and ETH well induced the expression of the ShCTR1 gene, and 1-MCP and DPI inhibited the expression of the ShCTR1 gene to different degrees, which proved that ROS and ET were also positively correlated with the expression of the ShCTR1 gene. ShCTR1 was transferred into tobacco (Nicotiana tabacum L.), then repeat the above experiment. It was shown that positive rate and porosity were lowest and highest after DPI and AT treatments, respectively, it showed a positive correlation, which proved that the ShCTR1 gene was positively regulating the formation of aerenchyma. Overexpression of the ShCTR1 gene increased the content of ROS, consequently, the regulation of aerenchyma formation by the ShCTR1 gene is mainly mediated by ROS. It suggested that the formation of aerenchyma in S. inversa was related to hypoxia in the alpine environment, and ShCTR1 interacts with ShRBOH1 to positively regulate the formation of aerenchyma mainly mediated by ROS. [ABSTRACT FROM AUTHOR]

Leucine-rich repeat receptor-like kinases (LRR-RLKs) represent the largest subgroup of receptor-like kinases (RLKs) in plants. While some LRR-RLK members play a role in regulating various plant growth processes related to morphogenesis, disease resistance, and stress response, the functions of most LRR-RLK genes remain unclear. In this study, we identified 397 LRR-RLK genes from the genome of Camellia sinensis and categorized them into 16 subfamilies. Approximately 62% of CsLRR-RLK genes are situated in regions resulting from segmental duplications, suggesting that the expansion of CsLRR-RLK genes is due to segmental duplications. Analysis of gene expression patterns revealed differential expression of CsLRR-RLK genes across different tissues and in response to stress. Furthermore, we demonstrated that CssEMS1 localizes to the cell membrane and can complement Arabidopsis ems1 mutant. This study is the initial in-depth evolutionary examination of LRR-RLKs in tea and provides a basis for future investigations into their functionality. [ABSTRACT FROM AUTHOR]

Rhizospheric microbes help plants to acquire and assimilate nutrients, improve soil texture and modulate extracellular molecules. Rhizosphere bacteria regularly encounter a copious number of variables, such as temperature, pH, nutrients, pest resistance mechanisms, etc. The extracellular concentration of chemical messengers fabricated by plant growth promoting bacteria (PGPB) in a system is directly proportional to the bacterial population. To dwindle the use of chemically synthesised pesticides, plant growth-promoting rhizobacteria (PGPR) are new arsenals of imperishable agricultural practises for managing plant pathogens and resistance. This review aims to harness the rhizosphere milieu to raise climate smart crops. The PGPB mediated hormonal control of plant stress management pathway could be potentially modified for the benefit of plants. Nutrient solubilisation strengthens the rhizomicrobiome for phytoremediation and pathogen control. Quorum sensing as well as the role of enzymes and siderophores in rhizo-microbiome has been discussed. With advent of metagenomics, the understanding of soil microbiome ecology has acquired new dimensions and has enabled us to modify the microbiome for sustainable agriculture and enhanced productivity. [ABSTRACT FROM AUTHOR]

Root tips can sense moisture gradients and grow into environments with higher water potential. This process is called root hydrotropism. Here, we report three closely related receptor-like kinases (RLKs) that play critical roles in root hydrotropism: ALTERED ROOT HYDROTROPIC RESPONSE 1 (ARH1), FEI1, and FEI2. Overexpression of these RLKs strongly reduce root hydrotropism, but corresponding loss-of-function mutants exhibit an increased hydrotropic response in their roots. All these RLKs show polar localization at the plasma membrane regions in root tips. The biosynthesis of the cell wall, cutin, and wax (CCW) is significantly impaired in root tips of arh1-2 fei1-C fei2-C. A series of known CCW mutants also exhibit increased root hydrotropism and reduced osmotic tolerance, similar to the characteristics of the triple mutant. Our results demonstrat that the integrity of the cell wall, cutin, and root cap wax mediate a trade-off between root hydrotropism and osmotic tolerance. Plants have evolved strategies to protect root tips from the damage of stresses. Chang et al., show that root tips are covered with wax, which can efficiently protect root tips from osmotic stress and alter root hydrotropism in Arabidopsis. [ABSTRACT FROM AUTHOR]

Background: Cotton boll shedding is one of the main factors adversely affecting the cotton yield. During the cotton plant growth period, low light conditions can cause cotton bolls to fall off prematurely. In this study, we clarified the regulatory effects of low light intensity on cotton boll abscission by comprehensively analyzing the transcriptome and metabolome. Results: When the fruiting branch leaves were shaded after pollination, all of the cotton bolls fell off within 5 days. Additionally, H2O2 accumulated during the formation of the abscission zone. Moreover, 10,172 differentially expressed genes (DEGs) and 81 differentially accumulated metabolites (DAMs) were identified. A KEGG pathway enrichment analysis revealed that the identified DEGs and DAMs were associated with plant hormone signal transduction and flavonoid biosynthesis pathways. The results of the transcriptome analysis suggested that the expression of ethylene (ETH) and abscisic acid (ABA) signaling-related genes was induced, which was in contrast to the decrease in the expression of most of the IAA signaling-related genes. A combined transcriptomics and metabolomics analysis revealed that flavonoids may help regulate plant organ abscission. A weighted gene co-expression network analysis detected two gene modules significantly related to abscission. The genes in these modules were mainly related to exosome, flavonoid biosynthesis, ubiquitin-mediated proteolysis, plant hormone signal transduction, photosynthesis, and cytoskeleton proteins. Furthermore, TIP1;1, UGT71C4, KMD3, TRFL6, REV, and FRA1 were identified as the hub genes in these two modules. Conclusions: In this study, we elucidated the mechanisms underlying cotton boll abscission induced by shading on the basis of comprehensive transcriptomics and metabolomics analyses of the boll abscission process. The study findings have clarified the molecular basis of cotton boll abscission under low light intensity, and suggested that H2O2, phytohormone, and flavonoid have the potential to affect the shedding process of cotton bolls under low light stress. [ABSTRACT FROM AUTHOR]

Background: The N-terminal regulatory element (NRE) of Receptor-like kinases (RLKs), consisting of the juxtamembrane segment in receptor kinases (RKs) and the N-terminal extension segment in RLCKs, is a crucial component that regulates the activities of these proteins. However, the features and functions of the NRE have remained largely unexplored. Herein, we comprehensively analyze 510,233 NRE sequences in RLKs from 528 plant species, using information theory and data mining techniques to unravel their common characteristics and diversity. We also use recombinant RKs to investigate the function of the NRE in vitro. Results: Our findings indicate that the majority of NRE segments are around 40–80 amino acids in length and feature a serine-rich region and a 14-amino-acid consensus sequence, 'FSYEELEKAT[D/N]NF[S/D]', which contains a characteristic α-helix and ST motif that connects to the core kinase domain. This conserved signature sequence is capable of suppressing FERONIA's kinase activity. A motif discovery algorithm identifies 29 motifs with highly conserved phosphorylation sites in RK and RLCK classes, especially the motif 'VGPWKpTGLpSGQLQKAFVTGVP' in LRR-VI-2 class. Phosphorylation of an NRE motif in an LRR-VI-2 member, MDIS1, modulates the auto-phosphorylation of its co-receptor, MIK1, indicating the potential role of NRE as a 'kinase switch' in RLK activation. Furthermore, the characterization of phosphorylatable NRE motifs improves the accuracy of predicting phosphorylatable sites. Conclusions: Our study provides a comprehensive dataset to investigate NRE segments from individual RLKs and enhances our understanding of the underlying mechanisms of RLK signal transduction and kinase activation processes in plant adaptation. [ABSTRACT FROM AUTHOR]

Knowledge of the effect of different copper (Cu) chemical forms and their application mode on meeting the plant's Cu requirement is much more limited than that of other micronutrients. In this work, hydroponically-grown tobacco (Nicotiana rustica L.) plants were pre-cultured for thirty days under Cu-sufficient and Cu-deficient conditions, then the Cu-deficient plants were resupplied with 0.5 µM CuSO4 (CuSu) or Cu tetraamine sulfate complex ([Cu(NH3)4]SO4) (CuAm) through roots or leaves. The biomass of plants was resumed almost equally by both chemical forms of Cu. Cu's leaf and root concentrations exhibited a more pronounced response to CuSu application. In contrast, the restoration of the activities of Cu-containing enzymes (superoxide dismutase, polyphenol oxidase, diamine oxidase) was either similar to or, in some cases, even higher when CuAm was applied. The leaf iron concentration was also diminished under Cu starvation and increased by Cu resupply more effectively by CuAm. The activity of phenylalanine ammonia-lyase and peroxidase, phenolics accumulation, and lignin deposition was significantly influenced by Cu deficiency and resupply. Foliar-applied CuAm and root-applied CuSu were the most effective treatments for the resumption of lignin concentration. Results showed efficient re-translocation of foliar-applied Cu. However, the activity of defense enzymes and lignin content suggests that foliar spraying likely induced mechanical stress in the leaves. Furthermore, the effect of the accompanying ion (NH4+) was likely the mechanism for the superior effect of CuAm in the induction of structural strength through lignin deposition and improvement of Fe uptake in plants compared with CuSu. [ABSTRACT FROM AUTHOR]

Downstream signalling involving adenylyl cyclases (ACs) and kinases is a key component of several processes in plants including cell division, growth, and response to stress. ACs are enzymes that generate the second messenger molecule, 3′,5′-cyclic adenosine monophosphate (cAMP) from 5′-adenosine triphosphate (ATP) while kinases are enzymes that catalyze the addition of a phosphate group to other molecules (trans-phosphorylation) or themselves (auto-phosphorylation). Apparently, while there has been an expanded record of various ACs and kinases identified in plants, no plant molecule to date has been shown to possess both the AC and kinase activities/functions and with such activities/functions having the characteristic of cross-talking interactions. Therefore, in an endeavor to find such a molecule, we searched the amino acid sequence of a known Arabidopsis AC, pentatricopeptide repeat (AtPPR) protein, and found a kinase-specific sequence signature (KSSS), which we speculated to be working in synergy with the AC center in this protein during downstream signalling. So, in order to test if this additional center is catalytically active and perhaps also having some cross-talking interactions with the AC center, we cloned, expressed, and affinity purified a truncated version of AtPPR, harboring both the AC and KSSS centers (AtPPR-AC/K). When tested in vitro, the recombinant AtPPR-AC/K showed a Mn2+-dependent AC activity that is positively enhanced by Ca2+ and HCO3− and a trans-/auto-phosphorylation kinase activity capable of utilizing both ATP and GTP as substrates and specific to the serine, threonine, and tyrosine amino acids as target residues. In addition, the kinase activity of AtPPR-AC/K was found to be reduced by cAMP while at the same time, it was totally shut down by Ca2+. This thus qualified both cAMP and Ca2+ as molecular switches or modulators, capable of regulating AtPPR functions through cross-talking interactions between the activities of its two domains. Our work, therefore, has essentially established AtPPR as the first member of a new class of moonlighting proteins with AC and kinase activities that have cross-talking interactions between themselves, conceivably presenting this protein as an ideal candidate for further explorations to improve plants, particularly agricultural crops. [ABSTRACT FROM AUTHOR]

Aims: At the same location, variability among orchards may be high, which is reflected in fruit quality, and it may be associated mainly with growers' practices. This study aimed to identify physicochemical variability within pears (Pyrus communis L. cv 'Rocha') from three orchards from the same location and under the same climate conditions and correlate it with mineral composition. Methods: Fruits from three orchards harvested at the optimal harvest time were characterized during ripening under shelf-life conditions of 7 d at 20 ± 2 °C. The analyses performed included ethylene production, respiration rate, fruit quality (firmness, skin colour, soluble solids, and titratable acidity), macro and micronutrients, ethylene biosynthesis enzymes, esters, sugars, and organic acids. Principal component analysis was used to show the variability among fruits from the three orchards and to correlate the differences with the fruit mineral composition. Results: Phosphorus (P) and potassium (K) were significantly correlated with esters and soluble solids content (r ∼ 0.4 for both minerals). Fruits with higher P and K concentrations were associated with a potential over-ripeness pattern considering their higher acetate production and lower sugar concentration. Esters, soluble sugars, and sorbitol were the dominant fruit quality factors responsible for the differences among the orchards. Conclusion: With this study it is expected that a better understanding of the relationship between specific minerals and quality parameters can help growers manage their orchards more efficiently and achieve consumers' quality demands. [ABSTRACT FROM AUTHOR]

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Abscisic acid (ABA) is a phytohormone that not only important for plant growth, but also mediating the stress response. The roles of ABA in plant immunity are especially multifaceted. Recently, the ABA functional analogues are of great significance to promote its application. Here, we reported an ABA functional analogue named 167A. 167A inhibits plant growth and seeds germinating of Arabidopsis. Meanwhile, the 167A enhanced the plant immunity, which is opposite of ABA. We further investigated the PTI-response after 167A treatment, and the results show that the ROS burst, callose deposition accumulate with 167A treatment. Moreover, 167A also influence the degree of stomal closed. RNA-seq assays show that the 167A down-regulated the ABA associated genes and upregulated the JA/SA/ET associated genes. Through genetic analysis, the 167A modulating the plant resistance through the PYR/PYL Receptors. Together, these results demonstrate that a novel ABA analogue 167A positive regulated plant immunity and has great potential for agricultural applications. [ABSTRACT FROM AUTHOR]

Phytohormone is a key regulator of plant growth and development. It has important effects on plant under biotic and abiotic stresses. However, the dose control of phytohormone is always a difficult problem in the application process, which limits the application range of phytohormone. Nanotechnology, because of its characteristics of controlled release, targeted therapy, non-pollution, high adsorption, lower volatilization of active substances, and low dosage of drug, comes into researchers' vision. Nanomaterials were directly applicated on crops at the early stage, and then active substances, such as pesticides, were encapsulated with nanomaterials, also achieved good results in the field. Currently, more and more attentions have been paid to nano-enabled delivery of phytohormones to plants, and formed a new field in agriculture. In present work, we reviewed the existing literatures, focused on the important regulatory roles of phytohormones in plant growth and development and their application potential, and the development and application prospect of nanomaterials combined with phytohormones were also have been discussed. [ABSTRACT FROM AUTHOR]

Spontaneous defoliation improves the harvesting efficiency and yield of sugarcane. Here, we investigated the ultrastructural changes and pectinase and cellulase activity in the third, fifth, and seventh leaf sheaths in four sugarcane varieties with varying spontaneous defoliation performance during maturation. At the early and middle stages of spontaneous defoliation, the cells in the abscission zones of the third, fifth, and seventh leaf sheaths were degrading. At the late stage, no complete organelles and hollow or broken spots in the cell walls were observed in the abscission zone cells of defoliation-prone varieties, while complete organelles and intact cell walls were present in the abscission zone cells at the same leaf positions in defoliation-resistant varieties. From the early to late stages, defoliation-prone varieties had higher pectinase activity in the abscission zones of the fifth and seventh leaf sheaths. At the early stage of defoliation, defoliation-prone varieties had significantly higher cellulase activity in the abscission zones of the third, fifth, and seventh leaf sheaths. Correlation analysis showed that the spontaneous defoliation rate was significantly positively correlated with pectinase activity in the leaf sheaths. In conclusion, the spontaneous defoliation of sugarcane was closely related to changes in cell morphology and pectinase activites in leaf sheaths. [ABSTRACT FROM AUTHOR]

CrRLK1L is subfamily of the receptor-like kinase family, which unique to plants and play an important role in regulation of plant growth and development and response to stress. Information about the number, location, structure, molecular phylogeny and expression of CrRLK1L genes in peanut were limited. In this study, 89 CrRLK1L genes were identified in the peanut genome, and further divided into ten groups according to phylogenetic analysis. CrRLK1L genes were dispersive and unevenly distributed on 20 chromosomes. Structure analysis revealed that AhCrRLK1LVIIIs and AhCrRLK1LIXs exhibit 7 to 16 introns, but all the AhCrRLK1LIIs, AhCrRLK1LVs, AhCrRLK1LVIs and the majority of the AhCrRLK1LIVs and AhCrRLK1LXs contained no intron. Synteny analysis showed that segmental duplications played a critical role in AhCrRLK1Ls expansion, and many AhCrRLK1Ls duplications occurred after the divergence of peanut and Arabidopsis/soybean from their last common ancestor. Gene transcription analyses revealed that five of the AhCrRLK1LIIs specifically expressed in flowers. All AhCrRLK1LVIIs and three AhCrRLK1LIIIs, might participate in regulation of pollen tube growth. AhCrRLK1LVs presented high transcription levels in different organisms, and induced by biotic and abiotic stresses, indicated its importance during plant growth, development and stress responses. In addition, fifteen genes in species specific clades and eleven CrRLK1LIVs were differently expressed after drought stress. And thirty-six AhCrRLK1Ls were induced by aluminum (Al) stress in Al tolerant peanut cultivar. Those result provide a foundation for further exploring the function of AhCrRLK1Ls in regulation growth and response to biotic and abiotic stress in peanuts. [ABSTRACT FROM AUTHOR]

Background: Most disease resistance (R) genes in plants encode proteins that contain leucine-rich-repeat (LRR) and nucleotide-binding site (NBS) domains, which belong to the NBS-LRR family. The sequenced genomes of Fusarium wilt-susceptible Vernicia fordii and its resistant counterpart, Vernicia montana, offer significant resources for the functional characterization and discovery of novel NBS-LRR genes in tung tree. Results: Here, we identified 239 NBS-LRR genes across two tung tree genomes: 90 in V. fordii and 149 in V. montana. Five VmNBS-LRR paralogous were predicted in V. montana, and 43 orthologous were detected between V. fordii and V. montana. The orthologous gene pair Vf11G0978-Vm019719 exhibited distinct expression patterns in V. fordii and V. montana: Vf11G0978 showed downregulated expression in V. fordii, while its orthologous gene Vm019719 demonstrated upregulated expression in V. montana, indicating that this pair may be responsible for the resistance to Fusarium wilt in V. montana. Vm019719 from V. montana, activated by VmWRKY64, was shown to confer resistance to Fusarium wilt in V. montana by a virus-induced gene silencing (VIGS) experiment. However, in the susceptible V. fordii, its allelic counterpart, Vf11G0978, exhibited an ineffective defense response, attributed to a deletion in the promoter's W-box element. Conclusions: This study provides the first systematic analysis of NBS-LRR genes in the tung tree and identifies a candidate gene that can be utilized for marker-assisted breeding to control Fusarium wilt in V. fordii. [ABSTRACT FROM AUTHOR]

Leaf senescence, the last stage of leaf development, is essential for crop yield by promoting nutrition relocation from senescence leaves to new leaves and seeds. NAC (NAM/ATAF1/ATAF2/CUC2) proteins, one of the plant-specific transcription factors, widely distribute in plants and play important roles in plant growth and development. Here, we identified a new NAC member OsNAC103 and found that it plays critical roles in leaf senescence and plant architecture in rice. OsNAC103 mRNA levels were dramatically induced by leaf senescence as well as different phytohormones such as ABA, MeJA and ACC and abiotic stresses including dark, drought and high salinity. OsNAC103 acts as a transcription factor with nuclear localization signals at the N terminal and a transcriptional activation signal at the C terminal. Overexpression of OsNAC103 promoted leaf senescence while osnac103 mutants delayed leaf senescence under natural condition and dark-induced condition, meanwhile, senescence-associated genes (SAGs) were up-regulated in OsNAC103 overexpression (OsNAC103-OE) lines, indicating that OsNAC103 positively regulates leaf senescence in rice. Moreover, OsNAC103-OE lines exhibited loose plant architecture with larger tiller angles while tiller angles of osnac103 mutants decreased during the vegetative and reproductive growth stages due to the response of shoot gravitropism, suggesting that OsNAC103 can regulate the plant architecture in rice. Taken together, our results reveal that OsNAC103 plays crucial roles in the regulation of leaf senescence and plant architecture in rice. [ABSTRACT FROM AUTHOR]

Background: Sugarcane (Saccharum spp.) holds exceptional global significance as a vital crop, serving as a primary source of sucrose, bioenergy, and various by-products. The optimization of sugarcane breeding by fine-tuning essential traits has become crucial for enhancing crop productivity and stress resilience. Leucine-rich repeat receptor-like kinases (LRR-RLK) genes present promising targets for this purpose, as they are involved in various aspects of plant development and defense processes. Results: Here, we present a detailed overview of phylogeny and expression of 288 (495 alleles) and 312 (1365 alleles) LRR-RLK genes from two founding Saccharum species, respectively. Phylogenetic analysis categorized these genes into 15 subfamilies, revealing considerable expansion or reduction in certain LRR-type subfamilies. Compared to other plant species, both Saccharum species had more significant LRR-RLK genes. Examination of cis-acting elements demonstrated that SsLRR-RLK and SoLRR-RLK genes exhibited no significant difference in the types of elements included, primarily involved in four physiological processes. This suggests a broad conservation of LRR-RLK gene function during Saccharum evolution. Synteny analysis indicated that all LRR-RLK genes in both Saccharum species underwent gene duplication, primarily through whole-genome duplication (WGD) or segmental duplication. We identified 28 LRR-RLK genes exhibiting novel expression patterns in response to different tissues, gradient development leaves, and circadian rhythm in the two Saccharum species. Additionally, SoLRR-RLK104, SoLRR-RLK7, SoLRR-RLK113, and SsLRR-RLK134 were identified as candidate genes for sugarcane disease defense response regulators through transcriptome data analysis of two disease stresses. This suggests LRR-RLK genes of sugarcane involvement in regulating various biological processes, including leaf development, plant morphology, photosynthesis, maintenance of circadian rhythm stability, and defense against sugarcane diseases. Conclusions: This investigation into gene duplication, functional conservation, and divergence of LRR-RLK genes in two founding Saccharum species lays the groundwork for a comprehensive genomic analysis of the entire LRR-RLK gene family in Saccharum. The results reveal LRR-RLK gene played a critical role in Saccharum adaptation to diverse conditions, offering valuable insights for targeted breeding and precise phenotypic adjustments. [ABSTRACT FROM AUTHOR]

In angiosperms, the transition from floral-organ maintenance to abscission determines reproductive success and seed dispersion. For petal abscission, cell-fate decisions specifically at the petal-cell base are more important than organ-level senescence or cell death in petals. However, how this transition is regulated remains unclear. Here, we identify a jasmonic acid (JA)-regulated chromatin-state switch at the base of Arabidopsis petals that directs local cell-fate determination via autophagy. During petal maintenance, co-repressors of JA signaling accumulate at the base of petals to block MYC activity, leading to lower levels of ROS. JA acts as an airborne signaling molecule transmitted from stamens to petals, accumulating primarily in petal bases to trigger chromatin remodeling. This allows MYC transcription factors to promote chromatin accessibility for downstream targets, including NAC DOMAIN-CONTAINING PROTEIN102 (ANAC102). ANAC102 accumulates specifically at the petal base prior to abscission and triggers ROS accumulation and cell death via AUTOPHAGY-RELATED GENEs induction. Developmentally induced autophagy at the petal base causes maturation, vacuolar delivery, and breakdown of autophagosomes for terminal cell differentiation. Dynamic changes in vesicles and cytoplasmic components in the vacuole occur in many plants, suggesting JA–NAC-mediated local cell-fate determination by autophagy may be conserved in angiosperms. In angiosperms, petal abscission is crucial for reproductive success and seed dispersion. However, the regulation of this abscission remains unclear. Here, the authors identify a process of petal abscission regulated by jasmonic acid via autophagy at the base of Arabidopsis petals. [ABSTRACT FROM AUTHOR]