27 results on '"Bajagai, Yadav S."'
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2. The temporal fluctuations and development of faecal microbiota in commercial layer flocks
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Joat, Nitish, Bajagai, Yadav S., Van, Thi Thu Hao, Stanley, Dragana, Chousalkar, Kapil, and Moore, Robert J.
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- 2023
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3. Humate application alters microbiota–mineral interactions and assists in pasture dieback recovery
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Whitton, Maria M., Ren, Xipeng, Yu, Sung J., Irving, Andrew D., Trotter, Tieneke, Bajagai, Yadav S., and Stanley, Dragana
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- 2023
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4. Ileum transcriptional response to prolonged supplementation with phytogenic product containing menthol, carvacrol and carvone
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Bajagai, Yadav S., Petranyi, Friedrich, Horyanto, Darwin, Batacan, Romeo, Jr., Lobo, Edina, Ren, Xipeng, Whitton, Maria M., Yu, Sung J., Kayal, Advait, and Stanley, Dragana
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- 2022
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5. Phytogenic supplement containing menthol, carvacrol and carvone ameliorates gut microbiota and production performance of commercial layers
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Bajagai, Yadav S., Petranyi, Friedrich, J. Yu, Sung, Lobo, Edina, Batacan, Jr., Romeo, Kayal, Advait, Horyanto, Darwin, Ren, Xipeng, M. Whitton, Maria, and Stanley, Dragana
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- 2022
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6. Precision glycan supplementation: A strategy to improve performance and intestinal health of laying hens in high‐stress commercial environments.
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Petranyi, Friedrich, Whitton, Maria M., Lobo, Edina, Ramirez, Santiago, Radovanović, Anita, Bajagai, Yadav S., and Stanley, Dragana
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AGRICULTURAL egg production ,GUT microbiome ,POULTRY industry ,ANIMAL welfare ,HENS ,POULTRY farming - Abstract
In the dynamic world of animal production, many challenges arise in disease control, animal welfare and the need to meet antibiotic‐free demands. Emerging diseases have a significant impact on the poultry industry. Managing gut microbiota is an important determinant of poultry health and performance. Introducing precision glycans as feed additives adds another dimension to this complex environment. The glycans play pivotal roles in supporting gut health and immunological processes and are likely to limit antibiotic usage while enhancing intestinal well‐being and overall poultry performance. This study explores precision glycan product as a feed additive supplemented at a continuous dose of 900 g per tonne of feed, in a free‐range production system on a large commercial farm. Forty thousand 17‐week‐old pullets were randomly allocated to one of two separated sections of the production shed, with individual silos and egg‐collecting belts. The flock performance, gut microbiota and its functionality were analysed throughout the laying cycle until 72 weeks of age. The results demonstrated that introducing precision glycans improved a range of performance indicators, including reduced cumulative mortality, especially during a major smothering event, where the birds pile up until they suffocate. There was also significantly increased hen‐housed egg production, reduced gut dysbiosis score and undigested feed, increased number of goblet cells and improved feed conversion ratio. Additionally, microbiota analysis revealed significant changes in the composition of the gizzard, ileum content, ileum mucosa, and caecal and cloacal regions. Overall, the findings suggest that precision glycans have the potential to enhance poultry egg production in challenging farming environments. [ABSTRACT FROM AUTHOR]
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- 2024
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7. Unveiling Microbial Dynamics and Gene Expression in Legume–Buffel Grass Coculture Systems for Sustainable Agriculture.
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Ren, Xipeng, Yu, Sung J., Brewer, Philip B., Ashwath, Nanjappa, Bajagai, Yadav S., Stanley, Dragana, and Trotter, Tieneke
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SUSTAINABLE agriculture ,ATMOSPHERIC nitrogen ,MICROBIAL diversity ,SOIL productivity ,GENE expression ,NITROGEN fixation - Abstract
Legumes enhance pasture health and soil productivity by fixing atmospheric nitrogen and boosting soil microbiota. We investigated the effects of tropical pasture legumes, including butterfly pea (Clitoria ternatea), seca stylo (Stylosanthes scabra), desmanthus (Desmanthus virgatus), lablab (Lablab purpureus), and Wynn cassia (Chamaecrista rotundifolia), on the soil microbial community and buffel grass (Cenchrus ciliaris) gene expression. Additionally, we explored the impact of a phytogenic bioactive product (PHY) in the coculture system. A pot trial using soil enriched with cow paunch compost included four treatments: monoculture of buffel grass and five legume species with and without PHY supplementation and coculture of buffel grass with each legume species with and without PHY supplementation. Actinobacteriota and Firmicutes were the dominant bacterial phyla. Regardless of PHY application, the coculture of buffel grass with legumes positively influenced microbial composition and diversity. Transcriptomic analysis revealed significant gene expression changes in buffel grass shoots and roots, with each legume uniquely affecting nitrogen metabolism. Lablab and Wynn cassia exhibited similarities in modulating metabolic processes, butterfly pea contributed to mycotoxin detoxification, and desmanthus balanced cell death and growth. Seca stylo enhanced root cell growth and regeneration. These findings offer insights for optimizing legume–grass coculture systems, enhancing soil activity and promoting sustainable agriculture. [ABSTRACT FROM AUTHOR]
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- 2024
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8. Phytogenic products, used as alternatives to antibiotic growth promoters, modify the intestinal microbiota derived from a range of production systems: an in vitro model
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Bajagai, Yadav S., Alsemgeest, Jenifer, Moore, Robert J., Van, Thi T. H., and Stanley, Dragana
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- 2020
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9. Maternal supplementation with phytogenic additives influenced the faecal microbiota and reproductive potential in sows
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Nowland, Tanya L., Stanley, Dragana, Kirkwood, Roy N., Torok, Valeria A., Bajagai, Yadav S., Gannon, Neil J., and Plush, Kate J.
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- 2021
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10. In vitro growth of gut microbiota with selenium nanoparticles
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Gangadoo, Sheeana, Bauer, Benjamin W., Bajagai, Yadav S., Van, Thi Thu Hao, Moore, Robert J., and Stanley, Dragana
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- 2019
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11. The Association between Broiler Litter Microbiota and the Supplementation of Bacillus Probiotics in a Leaky Gut Model.
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Horyanto, Darwin, Bajagai, Yadav S., von Hellens, Juhani, Chen, Xiaojing, Van, Thi Thu Hao, Dunlop, Mark W., and Stanley, Dragana
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POULTRY litter , *BACILLUS (Bacteria) , *COLONIZATION (Ecology) , *GUT microbiome , *PROBIOTICS , *SMALL intestine , *PECTORALIS muscle , *MICROBIAL diversity - Abstract
Simple Summary: The last decade of intensive research on the role and importance of intestinal microbial communities has brought abundant novel information and a high appreciation of microbiome contribution to medical and veterinary research that stretches beyond probiotic and pathogenic effects. We can now investigate the complex microbial community inhabiting major host cavities and colonising organs. In poultry research, it is common to collect cloacal swabs or faecal droppings for non-invasive sample collection or caecum and other intestinal origins to investigate their specific microbial communities. Litter samples are less frequently collected for microbial community investigation despite them being in close contact with birds and playing a significant role in microbiota colonisation, development, and maturation. Here, we explored the microbiota of litter and compared them with selected gut sections and bird health status. Probiotics provided from hatch have a major influence on microbiota development, and together with environmental and bedding microbiota, shape the microbial community of the litter. We investigated the influence of probiotic supplementation and a leaky gut challenge induced using dexamethasone (DEX) on the litter microbial community and litter parameters. The probiotic product was a mix of three Bacillus amyloliquefaciens strains. The litter microbiota were compared to the microbial communities from other gut sections. The litter samples had higher microbial diversity compared to the caecum, gizzard, jejunum, and jejunal mucosa. The high similarity between the litter phylum-level microbiota and gizzard microbiota detected in our study could be a consequence of ingested feed and litter passing through the gizzard. Moreover, the litter microbial community is fundamentally distinct from the intestinal microbiota, as evidenced by the number of genera present in the litter but absent from all the intestinal sections and vice versa. Furthermore, LEfSe analysis identified distinct microbial taxa across different groups, with specific genera associated with different treatments. In terms of litter quality, the birds in the DEX groups had a significantly higher moisture content, indicating successful leaky gut challenge, while probiotic supplementation did not significantly affect the moisture levels. These findings provide comprehensive insights into the distinct microbiota characteristics of litter. [ABSTRACT FROM AUTHOR]
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- 2024
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12. Transcriptomic Insights: Phytogenic Modulation of Buffel Grass (Cenchrus ciliaris) Seedling Emergence.
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Ren, Xipeng, Trotter, Tieneke, Ashwath, Nanjappa, Stanley, Dragana, Bajagai, Yadav S., and Brewer, Philip B.
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PENTOSE phosphate pathway ,TRANSCRIPTOMES ,ENERGY metabolism ,TRICARBOXYLIC acids ,GENE expression ,HEMODILUTION ,GERMINATION - Abstract
This study explores the impact of a novel phytogenic product containing citric acid, carvacrol, and cinnamaldehyde on buffel grass (Cenchrus ciliaris) seedling emergence. A dilution series of the phytogenic solution revealed a concentration range that promoted seedling emergence, with an optimal concentration of 0.5%. Transcriptomic analysis using RNA-seq was performed to investigate gene expression changes in seedlings under the influence of the phytogenic product. The results revealed that the phytogenic treatment significantly altered the gene expression, with a prevalent boost in transcriptional activity compared to the control. Functional analysis indicated the positive alteration of key metabolic pathways, including the tricarboxylic acid (TCA) cycle, glycolysis, and pentose phosphate pathways. Moreover, pathways related to amino acids, nucleotide biosynthesis, heme biosynthesis, and formyltetrahydrofolate biosynthesis showed substantial modulation. The study provides valuable insights into the molecular mechanisms underlying the phytogenic product's effects on grass seedling establishment and highlights its ability to promote energy metabolism and essential biosynthetic pathways for plant growth. [ABSTRACT FROM AUTHOR]
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- 2024
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13. Poultry feeds carry diverse microbial communities that influence chicken intestinal microbiota colonisation and maturation
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Haberecht, Sarah, Bajagai, Yadav S., Moore, Robert J., Van, T. T. Hao, and Stanley, Dragana
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- 2020
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14. Bacillus amyloliquefaciens Probiotics Mix Supplementation in a Broiler Leaky Gut Model.
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Horyanto, Darwin, Bajagai, Yadav S., Kayal, Advait, von Hellens, Juhani, Chen, Xiaojing, Van, Thi Thu Hao, Radovanović, Anita, and Stanley, Dragana
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POULTRY growth ,PROBIOTICS ,BACILLUS amyloliquefaciens ,GUT microbiome ,DIETARY supplements ,POULTRY products ,BACILLUS (Bacteria) - Abstract
The supplementation of antimicrobial growth promoters (AGPs) has been banned in many countries because of the emergence of antimicrobial-resistant pathogens in poultry products and the environment. Probiotics have been broadly studied and demonstrated as a promising AGP substitute. Our study is centred on the effects of a multi-strain Bacillus-based probiotic product on broiler production performance and gut microbial profile in a dexamethasone-induced leaky gut challenge. Two hundred and fifty-six broiler chicks were hatched and randomly assigned into four groups (wheat-soybean meal basal diet (BD) = non-supplemented control (C), BD supplemented with dexamethasone in week 4 (CD), BD containing a probiotic from day one (P), and BD containing a probiotic from day one and supplemented with dexamethasone during challenge week 4 (PD)). The production performance and caecal, gizzard, jejunal lumen and jejunal mucosa swab microbiota were studied by 16S rRNA gene sequencing. The Bacillus probiotic product significantly improved production performance and altered caecal gut microbiota (p ≤ 0.05), but no significant impact on microbiota was observed in other gut sections. [ABSTRACT FROM AUTHOR]
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- 2024
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15. Precision Glycan Supplementation Improves Gut Microbiota Diversity, Performance, and Disease Outbreak Resistance in Broiler Chickens.
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Lobo, Edina, Bajagai, Yadav S., Kayal, Advait, Ramirez, Santiago, Nikolić, Anja, Valientes, Rolando, and Stanley, Dragana
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GUT microbiome , *NATURAL immunity , *BROILER chickens , *DISEASE outbreaks , *POULTRY growth , *POULTRY farms , *WEIGHT gain - Abstract
Simple Summary: The intensive poultry production system faces production challenges like pathogenic infections, poor performance, and bird welfare. The use of antibiotics has been reduced due to regulations and increasing antimicrobial resistance, promoting research into viable alternatives. Precision glycans represent an alternative that modulates the gut microbial community and its metabolic functions. This study compares birds fed precision glycan-supplemented and non-supplemented diets in a commercial broiler farm. We report major alterations in microbiota across caecum, ileum, and ileum mucosa gut sections. The treated birds also showed better intestinal morphology and higher weight gain with an improvement in feed efficiency and disease resistance. The poultry industry contributes significantly to the global meat industry but faces many production challenges like high-density housing, welfare issues, and pathogenic infections. While antibiotics have commonly been used to treat many of these issues, they are being removed from poultry production globally due to increased microbial resistance. Precision glycans offer a viable alternative to antibiotics by modulating microbial metabolic pathways. In this study, we investigated the effects of precision glycan supplementation on productivity and gut microbiota in broilers. The experiment was conducted in a commercial setting using 32,400 male Ross chickens randomly divided into three sheds with 10,800 birds each. One shed with 12 pen replicates of 900 birds was used as control, while the other two with an equal number of replicates and birds were assigned to precision glycan supplementation. The treatment significantly improved the average daily weight gain and feed conversion ratio, with a significant modification in the abundance of several bacterial taxa in the caecum, ileum, and ileum mucosa microbial communities. There was increased richness and diversity in the caecum, with a reduction in Proteobacteria and an increase in Firmicutes. Richness remained unchanged in the ileum, with an increase in diversity and reduction in pathogenic genera like Clostridium and Escherichia-Shigella. Ileum mucosa showed a lower abundance of mucin degraders and an increased presence of next-generation probiotics. Supplemented birds showed a high level of disease resistance when the farm experienced an outbreak of infectious bronchitis, evidenced by lower mortality. Histological analysis confirmed improvements in the ileum and liver health, where the precision glycan supplementation reduced the area of congested sinusoids compared to the control group in the liver and significantly improved ileum intestinal morphology by increasing crypt depth and surface area. These results collectively suggest that precision glycans offer substantial benefits in poultry production by improving productivity, gut health, and disease resistance. [ABSTRACT FROM AUTHOR]
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- 2024
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16. Enhancing gut health and performance of grower-finisher pigs: assessing the efficacy of the mixture of microencapsulated essential oils and saponins.
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Yu, Sung J., Morris, Andrew, Kayal, Advait, Thi Thu Hao Van, Stanley, Dragana, and Bajagai, Yadav S.
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Context. The livestock industry demands alternative approaches to maintain animal health and productivity without using antimicrobials. Phytogenic feed additives, consisting of plant-derived compounds, offer promising benefits to grower-finisher pigs' gut microbiota and overall health. Aims. This study investigated the impact of essential oils and saponins as phytogenic feed additives on the gut microbiota and productivity of grower-finisher pigs. Methods. Four hundred male Large White × Landrace pigs were randomly allocated into control and treatment groups and provided with a basal diet. The treatment group supplemented commercial phytogenic feed additives. Performance data, general health, cumulative mortality, and bodyweight were monitored. Intestinal samples from different gut locations and rectal swab samples were collected for microbiota analysis. Key results. No significant difference in weight was observed between the two groups; however, the phytogenic feed additives notably affected gut microbiota. Greater microbial diversity and changes in genera abundance were evident. Campylobacter and Clostridium increased, while beneficial Lactobacillus increased, and Escherichia decreased. The supplemented group demonstratedmore consistent growth, with higher minimumweights. Conclusions. Phytogenic feed additives have a significant impact on the gut microbiota of grower-finisher pigs. A diversemicrobial community and specific changes in genera abundance were observed, indicating the potential role of these additives in modulating gut health. Implications. This study emphasises the potential advantages of using phytogenic feed additives to improve the health and productivity of livestock without the use of antibiotics. [ABSTRACT FROM AUTHOR]
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- 2024
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17. Application of Phytogenic Liquid Supplementation in Soil Microbiome Restoration in Queensland Pasture Dieback.
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Ren, Xipeng, Whitton, Maria M., Yu, Sung J., Trotter, Tieneke, Bajagai, Yadav S., and Stanley, Dragana
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SOIL restoration ,DIEBACK ,PASTURES ,AGRICULTURE ,BEEF industry ,PLANT productivity ,SOIL microbial ecology ,RHIZOSPHERE ,GRASSLAND soils - Abstract
Pasture production is vital in cattle farming as it provides animals with food and nutrients. Australia, as a significant global beef producer, has been experiencing pasture dieback, a syndrome of deteriorating grassland that results in the loss of grass and the expansion of weeds. Despite two decades of research and many remediation attempts, there has yet to be a breakthrough in understanding the causes or mechanisms involved. Suggested causes of this phenomenon include soil and plant microbial pathogens, insect infestation, extreme heat stress, radiation, and others. Plants produce a range of phytomolecules with antifungal, antibacterial, antiviral, growth-promoting, and immunostimulant effects to protect themselves from a range of environmental stresses. These products are currently used more in human and veterinary health than in agronomy. In this study, we applied a phytogenic product containing citric acid, carvacrol, and cinnamaldehyde, to investigate its ability to alleviate pasture dieback. The phytogenic liquid-based solution was sprayed twice, one week apart, at 5.4 L per hectare. The soil microbial community was investigated longitudinally to determine long-term effects, and pasture productivity and plant morphometric improvements were explored. The phytogenic liquid significantly improved post-drought recovery of alpha diversity and altered temporal and spatial change in the community. The phytogenic liquid reduced biomarker genera associated with poor and polluted soils and significantly promoted plant and soil beneficial bacteria associated with plant rhizosphere and a range of soil benefits. Phytogenic liquid application produced plant morphology improvements and a consistent enhancement of pasture productivity extending beyond 18 months post-application. Our data show that phytogenic products used in the livestock market as an alternative to antibiotics may also have a beneficial role in agriculture, especially in the light of climate change-related soil maintenance and remediation. [ABSTRACT FROM AUTHOR]
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- 2023
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18. Remediation of Pasture Dieback Using Plant Growth Promotant.
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Whitton, Maria M., Ren, Xipeng, Yu, Sung J., Trotter, Tieneke, Stanley, Dragana, and Bajagai, Yadav S.
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PLANT growth ,DIEBACK ,PASTURES ,ANIMAL feeds ,SOIL remediation ,HEAVY-metal tolerant plants ,GRASSES - Abstract
Pasture dieback is a syndrome of unknown cause affecting grasses in Australia, creating significant economic losses to farmers by reducing available livestock feed and paddock carrying capacity. RC3 is a commercial plant growth stimulant tri-sodium salt of trimercapto-S-triazine (TMT) and potassium humate as active ingredients. TMT is commonly used for soil and wastewater remediation by capturing and binding heavy metals, while potassium humate is an organic compound used as a plant growth promoter. We investigated the ability of RC3 to restore soil health and productivity under pasture dieback conditions. RC3 was applied on pasture dieback affected paddock replicate plots once, at a rate of 4 mL/m
2 , and soil core samples were taken weekly to analyse microbial communities. Plants were collected regularly to measure dry matter and plant morphometrics. Twenty weeks after a single application, dry matter increased in RC3 plots by 900 kg/ha compared to control plots, and at week 48, eleven months after the single application, RC3 plots showed a trend of more grass and dicot species than the control. Morphometric measures suggest minor improvements in dicotyledon plants. Alpha diversity did not change with the application of RC3. Temporal correlation analysis shows that RC3 steadily reduced the presence of genera predominant in poor soils and with extreme environmental conditions over time and prevented the decline of beneficial genera, such as Marmoricola, Actinomadura, Dactylosporangium, and mle1-7. [ABSTRACT FROM AUTHOR]- Published
- 2022
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19. Controlled Intestinal Microbiota Colonisation in Broilers under the Industrial Production System.
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Kayal, Advait, Stanley, Dragana, Radovanovic, Anita, Horyanto, Darwin, Van, Thi Thu Hao, and Bajagai, Yadav S.
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COLONIZATION (Ecology) ,GUT microbiome ,INDUSTRIALISM ,BROILER chickens ,MICROBIAL communities ,MICROBIAL inoculants ,POULTRY farms - Abstract
Simple Summary: Immediately post-hatch, young chicks are exposed to microbes in the air, feed and environment, and rapid colonisation of the gut begins. In environments loaded with pathogens, this process is critical with lifelong implications for the birds. Here, we present the large-scale commercial hatchery-based experiment using the "Hen in the bag" approach similar to faecal transfer in humans, where the highly diverse product, based on chicken caecal microbiota, was administered via automated spray equipment to the birds immediately post-hatch to mimic maternal inoculation. We report highly significant alterations in gut microbiota across upper and lower gut sections, changes in diversity in the caecum and jejunal mucosa, high resemblance of the inoculum microbial community to the caecal microbiota of the birds and consistently higher weight of treated animals. The concept of designer microbiota in chicken is focused on early exposure of the hatchlings to pathogen-free microbiota inoculum, limiting the early access to harmful and pathogenic microorganisms, thus promoting colonisation of the gut with beneficial and natural poultry microbiota. In this study, we controlled colonisation of the intestine in broiler chickens in a large-scale industrial setting via at-hatch administration of a commercial product containing a highly diverse microbiota originating from the chicken caecum. The treatment significantly transformed the microbiota membership in the crop, proventriculus, jejunum and caecum and significantly altered the taxa abundance in the jejunum, jejunum mucosa, and caecum estimated using PERMANOVA and unweighted and weighted UniFrac distances, respectively. The treatment also improved the growth rate in chickens with no significant alteration in feed conversion ratio. A comparison of inoculum product microbiota structure revealed that the inoculum had the highest Shannon diversity index compared to all investigated gut sections, and the number of Observed Species second only to the caecal community. PCoA plots using weighted or unweighted UniFrac placed the inoculum samples together with the samples from the caecal origin. [ABSTRACT FROM AUTHOR]
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- 2022
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20. Sea Minerals Reduce Dysbiosis, Improve Pasture Productivity and Plant Morphometrics in Pasture Dieback Affected Soils.
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Whitton, Maria M., Ren, Xipeng, Yu, Sung J., Irving, Andrew D., Trotter, Tieneke, Bajagai, Yadav S., and Stanley, Dragana
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Pasture dieback (PD) is a grassland deteriorating syndrome resulting in grass loss and weed expansion in Australian pastures, with current estimates indicating that over four million hectares are affected. PD creates financial losses to the industry by reducing animal carrying capacity and producing poor-quality feed, resulting in diminished productivity. After more than a decade since PD first appeared in Australia, the causes and effective treatments are still unknown. Suggested causes include soil microbiota dysbiosis, pathogens, insects, climate change and overuse of chemical fertilisers. Sea minerals have been suggested as capable of improving plants' yield, quality, taste, and nutritional value, but were never brought into conventional practice as an alternative to chemical fertilisers. Here, we investigated the capacity of sea minerals to improve grass health and yield of PD-affected soil. The replicate plots were treated with water or with 4 mL/m
2 of commercially available sea mineral product to investigate the soil chemistry profile, plant morphometrics, pasture productivity, soil microbiota profile, and microbiota-nutrient interactions. Sea mineral application significantly increased total dry matter 20 weeks after a single application, translating to an additional 967 kg/ha; this benefit was still present at 498 kg/ha eleven months post a single application. Sea mineral application improved soil microbiota by boosting beneficial taxa while reducing genera associated with arid and toxic soils. Additionally, sea mineral application increased the number of grassroots up to eleven months post a single application. Our data suggest the benefits of sea mineral application to damaged, unproductive or exhausted soils could be further explored as a natural, affordable, and non-toxic alternative to chemical fertilisers. [ABSTRACT FROM AUTHOR]- Published
- 2022
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21. Phytogenic Blend Improves Intestinal Health and Reduces Obesity, Diabetes, Cholesterol and Cancers: A Path toward Customised Supplementation.
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Yu, Sung J., Bajagai, Yadav S., Petranyi, Friedrich, de las Heras-Saldana, Sara, Van, Thi Thu Hao, and Stanley, Dragana
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LIPID metabolism ,ESSENTIAL oils ,FEED additives ,CARBOHYDRATE metabolism ,CHOLESTEROL - Abstract
Poultry production is among the most challenging industries for pathogen control. High animal density and abundance of faecal material demand strict biosecurity measures and continual vigilance in monitoring animal health parameters. Despite this vigilance, dealing with disease outbreaks is a part of farmers' routines. Phytogenic feed additives comprised of herbs, spices, essential oils, and oleoresins have potent antimicrobial and anti-inflammatory actions. Related studies are gaining substantial interest in human and animal health worldwide. In this study, a commercial blend phytogenic feed additive was supplemented to layers in an industrial free-range production system with 20,000 birds in both control and treatment groups. At the end of the trial, the ileum tissue was sampled for RNAseq transcriptomic analysis to study the host reaction to the supplement. Phytogenic supplement significantly inhibited four cholesterol-related pathways and reduced the Arteriosclerosis disease category towards improved cardiovascular health. The supplemented birds exhibited reduced disease susceptibility for 26 cancer categories with p-values in the range from 5.23 × 10
−4 to 1.02 × 10−25 . Major metabolic shifts in Lipid metabolism in combination with Carbohydrate metabolism have resulted in a decrease in the Obesity category, altering the ratio of fat and carbohydrate metabolism toward lower fat storage. [ABSTRACT FROM AUTHOR]- Published
- 2022
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22. Phytogen Improves Performance during Spotty Liver Disease by Impeding Bacterial Metabolism and Pathogenicity.
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Yu, Sung J., Bajagai, Yadav S., Petranyi, Friedrich, and Stanley, Dragana
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BACTERIAL metabolism , *LIVER diseases , *BACTERIAL diseases , *SHOTGUN sequencing , *POULTRY industry , *CLOSTRIDIUM perfringens - Abstract
A range of antibiotic alternative products is increasingly studied and manufactured in the current animal agriculture, particularly in the poultry industry. Phytogenic feed additives are known for their remarkable ability to suppress pathogens such as Clostridium spp., Escherichia coli, and Salmonella. Other than enhancing biosecurity, improvements in productivity and performance were also observed. However, clear mechanisms for these improvements were not established. In this study, 20,000 Lohman-Brown layers were provided with phytogenic supplement from 16 to 40 weeks of age, and performance parameters were assessed against the same number of unsupplemented control birds. The performance results showed that the birds with phytogenic supplementation presented consistently reduced mortality, increased rate of lay, and increased average egg weight. Functional analysis through shotgun sequencing of cecal metagenomes confirmed a substantial functional shift in the microbial community, showing that phytogen significantly reduced the range of microbial functions, including the production of essential vitamins, cofactors, energy, and amino acids. Functional data showed that phytogen supplementation induced a phenotypic shift in intestinal bacteria LPS phenotype toward the less pathogenic form. The study corroborates the use of phytogenic products in antibiotic-free poultry production systems. The productivity improvements in the number and weight of eggs produced during Spotty Liver Disease justify further optimizing phytogenic alternatives for use in high-risk open and free-range poultry systems. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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23. The role of microbiota in animal health and productivity: misinterpretations and limitations.
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Bajagai, Yadav S., Trotter, Mark, Williams, Thomas M., Costa, Diogo F. A., Whitton, Maria M., Ren, Xipeng, Wilson, Cara S., and Stanley, Dragana
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ANIMAL health , *ANIMAL science , *ANIMAL welfare , *GUT microbiome , *ANIMAL nutrition , *MICROBIAL communities - Abstract
The rise of sequencing technology brought about a surge of new methodologies that offered a new and deeper level of understanding of the role of the microbiome in the health and performance of livestock. This started a chain reaction in technology evolution, and a decade later, we have developed a new appreciation of a healthy gut and the role of early colonisation and nutrition in developing the microbiome, and its subsequent impact on animal productivity. An abundance of new products flooded the livestock supplement market with the promise of improving the health of intestinal microbiota. However, the impact of these products and any potential gains they might provide have not always been quantified or validated. Further to this, the potential interactions with the microbial community naturally occurring in the feed-base have not commonly been considered. We have recently shown that animal feed carries a complex microbial community that can have various impacts, including negating farm biosecurity measures. The ruminant animal provides an even greater level of complexity where physiological drivers act to maintain ruminal homeostasis. Despite many advances, numerous knowledge gaps remain, and the methodologies are not without their challenges with almost constant evolution in analysing and interpreting data. In this paper, we will discuss the benefits, challenges and shortfalls of microbiome science, its interfaces with multi-omics research and the strategies of its contribution to animal production science. With advances in sequencing technology, research of microbial communities has become more accessible and affordable. In livestock research, the roles of microbiota are associated with animal performance and welfare. Although universally accepted, amplicon-sequencing methodology has several issues that need to be considered in data interpretation. Here we review the main shortfalls, benefits and uses of the methodology in livestock research. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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24. Cecal Microbiota of Free-Range Hens Varied With Different Rearing Enrichments and Ranging Patterns.
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Bari, Md Saiful, Kheravii, Sarbast K., Bajagai, Yadav S., Wu, Shu-Biao, Keerqin, Chake, and Campbell, Dana L. M.
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CHICKENS ,HENS ,SHORT-chain fatty acids ,PHYSIOLOGICAL adaptation ,HEALTH behavior ,RADIO frequency identification systems ,PROPIONIC acid - Abstract
Free-range pullets are reared indoors but the adult hens can go outside which is a mismatch that may reduce adaptation in the laying environment. Rearing enrichments might enhance pullet development and adaptations to subsequent free-range housing with impact on behavior and health measures including gut microbiota. Adult free-range hens vary in range use which may also be associated with microbiota composition. A total of 1,700 Hy-Line Brown
® chicks were reared indoors across 16 weeks with three enrichment treatment groups: "control" with standard litter housing, "novelty" with weekly changed novel objects, and "structural" with custom-designed perching structures in the pens. At 15 weeks, 45 pullet cecal contents were sampled before moving 1,386 pullets to the free-range housing system. At 25 weeks, range access commenced, and movements were tracked via radio-frequency identification technology. At 65 weeks, 91 hens were selected based on range use patterns ("indoor": no ranging; "high outdoor": daily ranging) across all rearing enrichment groups and cecal contents were collected for microbiota analysis via 16S rRNA amplicon sequencing at V3-V4 regions. The most common bacteria in pullets were unclassified Barnesiellaceae, Prevotella, Blautia and Clostridium and in hens Unclassified, Ruminococcus , unclassified Lachnospiraceae, unclassified Bacteroidales, unclassified Paraprevotellaceae YRC22, and Blautia. The microbial alpha diversity was not significant within the enrichment/ranging groups (pullets: P ≥ 0.17, hen rearing enrichment groups: P ≥ 0.06, hen ranging groups: P ≥ 0.54), but beta diversity significantly varied between these groups (pullets: P ≤ 0.002, hen rearing enrichment groups: P ≤ 0.001, hen ranging groups: P ≤ 0.008). Among the short-chain fatty acids (SCFAs), the propionic acid content was higher (P = 0.03) in the novelty group of pullets than the control group. There were no other significant differences in the SCFA contents between the rearing enrichment groups (all P ≥ 0.10), and the ranging groups (all P ≥ 0.17). Most of the genera identified were more abundant in the indoor than high outdoor hens. Overall, rearing enrichments affected the cecal microbiota diversity of both pullets and adult hens and was able to distinguish hens that remained inside compared with hens that ranging daily for several hours. [ABSTRACT FROM AUTHOR]- Published
- 2022
- Full Text
- View/download PDF
25. Prolonged continual consumption of oregano herb interferes with the action of steroid hormones and several drugs, and effects signaling across the brain–gut axis.
- Author
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Bajagai, Yadav S., Steel, Jason C., Radovanovic, Anita, and Stanley, Dragana
- Published
- 2021
- Full Text
- View/download PDF
26. A Microencapsulated Mixture of Eugenol and Garlic Tincture Supplementation Mitigates the Effect of Necrotic Enteritis on Intestinal Integrity and Increases Goblet Cells in Broilers.
- Author
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Kumar, Alip, Kheravii, Sarbast K., Ionescu, Catherine, Blanchard, Alexandra, Barekatain, Reza, Bajagai, Yadav S., and Wu, Shu-Biao
- Subjects
NECROTIC enteritis ,INTESTINES ,EUGENOL ,GARLIC ,FLUORESCEIN isothiocyanate ,PLANT extracts - Abstract
This study was conducted to examine the effects of a plant extract mixture, a microencapsulated product composed of eugenol and garlic tincture (PE), on intestinal health in broilers under necrotic enteritis (NE) challenge. A total of 960 d-old mixed-sex Cobb 500 chicks were randomly distributed to 48-floor pens housing 20 birds per pen. Six treatments were applied: UC, unchallenged control; CC, challenged control; PE, challenged group plus PE; AM, challenged group plus antimicrobial (AM); FAP, challenged group plus a full dose of AM with PE; HAP, challenged group plus a half dose of AM with PE in starter, grower and finisher phases. Birds in the challenged groups were inoculated with Eimeria spp. on d 9 and Clostridiumperfringens on d 14. On d 16, the CC group had increased serum fluorescein isothiocyanate dextran (FITC-d), reduced villus surface area, goblet cell number, upregulated CLDN1, JAM2 genes and reduced microbial diversity compared to the UC group (p < 0.05). Birds fed PE had reduced FITC-d, increased goblet cell number and Bifidobacterium compared to the CC group (p < 0.05). Birds fed PE had reduced CLDN5 expression in male birds, and Bacteroides spp. in female birds than CC group (p < 0.05). These findings suggest that PE supplementation mitigates the effect of NE by improving the intestinal health of birds. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
27. The Effects of Continual Consumption of Origanum vulgare on Liver Transcriptomics.
- Author
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Bajagai, Yadav S., Radovanovic, Anita, Steel, Jason C., Stanley, Dragana, Tufarelli, Vincenzo, and Dänicke, Sven
- Subjects
- *
LIVER , *HORMONE regulation , *ANIMAL products , *CARBOHYDRATE metabolism , *ANIMAL industry , *OREGANO , *POULTRY growth , *ANIMAL feeds - Abstract
Simple Summary: The use of phytogenic products has entered mainstream use in the livestock industry as an antibiotic alternative. These products, often based on herbs and spices with established antimicrobial properties, are generally considered as safe and natural, however, they are often administered in high doses and frequency. The direct effects of these products on the livestock animals remains under-reported. Using a transcriptomics, we show that supplementing 2% oregano in feed has direct effects on gene expression in the livers of broilers with a potential range of beneficial and negative side effects. Pathogen control is re-emerging as a significant challenge to the health of both humans and animals. The livestock industry is in the process of massively replacing in-feed antibiotics with organic production friendly plant-based products. Nutrigenomics as a science of the effects of food constituents on gene expression is shedding more light on both benefits and detrimental side-effects of feed additive prolonged consumption on the host, indicating the need to understand the feed-host interactions and their influence on the host disease profile. In this study, we investigated the effects of 2% oregano powder supplementation on the liver gene expression in healthy male broilers from the hatch to 6 weeks of age. Deep RNAseq was performed on average 113.3 million paired and quality trimmed sequences per sample and four samples for the control and treatment each. The results demonstrate the severity of oregano effect on liver gene expression with substantial modifications in steroid hormone regulation, fat and carbohydrate metabolism alterations and strong influence on the host disease and function profile. Oregano supplementation was able to interfere with the transcriptional effects of a range of registered drugs and to significantly transcriptionally inhibit a range of cancer disease categories including liver cancer, and to modify fat and carbohydrate metabolism. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
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