31 results on '"Atkins, Timothy"'
Search Results
2. Trimethoprim/sulfamethoxazole (co-trimoxazole) prophylaxis is effective against acute murine inhalational melioidosis and glanders
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Barnes, Kay B., Steward, Jackie, Thwaite, Joanne E., Lever, M. Stephen, Davies, Carwyn H., Armstrong, Stuart J., Laws, Thomas R., Roughley, Neil, Harding, Sarah V., Atkins, Timothy P., Simpson, Andrew J.H., and Atkins, Helen S.
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- 2013
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3. Characterization of lesion formation in marmosets following inhalational challenge with different strains of Burkholderia pseudomallei
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Nelson, Michelle, Nunez, Alejandro, Ngugi, Sarah A., Sinclair, Adam, and Atkins, Timothy P.
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- 2015
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4. Comparative experimental subcutaneous glanders and melioidosis in the common marmoset (Callithrix jacchus)
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Nelson, Michelle, Salguero, Francisco J., Dean, Rachel E., Ngugi, Sarah A., Smither, Sophie J., Atkins, Timothy P., and Lever, Mark S.
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- 2014
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5. The identification of surface proteins of Burkholderia pseudomallei
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Harding, Sarah V., Sarkar-Tyson, Mitali, Smither, Sophie J., Atkins, Timothy P., Oyston, Petra C.F., Brown, Katherine A., Liu, Yichun, Wait, Robin, and Titball, Richard W.
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- 2007
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6. Global map of growth-regulated gene expression in Burkholderia pseudomallei, the causative agent of melioidosis
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Rodrigues, Fiona, Sarkar-Tyson, Mitali, Harding, Sarah V., Sim, Siew Hoon, Chua, Hui Hoon, Lin, Chi Ho, Han, Xu, Karuturi, R. Krishna M., Sung, Ken, Yu, Kun, Chen, Wei, Atkins, Timothy P., Titball, Richard W., and Tan, Patrick
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Gene expression -- Research ,Pseudomonas -- Genetic aspects ,Pseudomonas -- Physiological aspects ,Messenger RNA -- Research ,Genetic research ,Biological sciences - Abstract
Many microbial pathogens express specific virulence traits at distinct growth phases. To understand the molecular pathways linking bacterial growth to pathogenicity, we have characterized the growth transcriptome of Burkholderia pseudomallei, the causative agent of melioidosis. Using a fine-scale sampling approach, we found approximately 17% of all B. pseudomallei genes displaying regulated expression during growth in rich medium, occurring as broad waves of functionally coherent gene expression tightly associated with distinct growth phases and transition points. We observed regulation of virulence genes across all growth phases and identified serC as a potentially new virulence factor by virtue of its coexpression with other early-phase virulence genes, serC-disrupted B. pseudomallei strains were serine auxotrophs and in mouse infection assays exhibited a dramatic attenuation of virulence compared to wild-type B. pseudomallei. Immunization of mice with serC-disrupted B. pseudomallei also conferred protection against subsequent challenges with different wild-type B. pseudomallei strains. At a genomic level, early-phase genes were preferentially localized on chromosome 1, while stationary-phase genes were significantly biased towards chromosome 2. We detected a significant level of chromosomally clustered gene expression, allowing us to predict ~100 potential operons in the B. pseudomallei genome. We computationally and experimentally validated these operons by showing that genes in these regions are preferentially transcribed in the same 5' [right arrow] 3' direction, possess significantly shorter intergenic lengths than the overall genome, and are expressed as a common mRNA transcript. The availability of this transcriptome map provides an important resource for understanding the transcriptional architecture of B. pseudomallei.
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- 2006
7. Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei
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Holden, Matthew T.G., Titball, Richard W., Peacock, Sharon J., Cerdeno-Tarraga, Ana M., Atkins, Timothy, Crossman, Lisa C., Pitt, Tyrone, Churcher, Carol, Mungall, Karen, Bentley, Stephen D., Sebaihia, Mohammed, Thomson, Nicholas R., Bason, Nathalie, Beacham, Ifor R., Brooks, Karen, Brown, Katherine A., Brown, Nat F., Challis, Greg L., Cherevach, Inna, Chillingworth, Tracy, Cronin, Ann, Crossett, Ben, Davis, Paul, DeShazer, David, Feltwell, Theresa, Fraser, Audrey, Hance, Zahra, Hauser, Heidi, Holroyd, Simon, Jagels, Kay, Keith, Karen E., Maddison, Mark, Moule, Sharon, Price, Claire, Quail, Michael A., Rabbinowitsch, Ester, Rutherford, Kim, Sanders, Mandy, Simmonds, Mark, Songsivilai, Sirirurg, Stevens, Kim, Tumapa, Sarinna, Vesaratchavest, Monkgol, Whitehead, Sally, Yeats, Corin, Barrell, Bart G., Oyston, Petra C.F., and Parkhill, Julian
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Pseudomonas infections -- Research ,Science and technology - Abstract
Burkholderia pseudomallei is a recognized biothreat agent and the causative agent of melioidosis. This Gram-negative bacterium exists as a soil saprophyte in melioidosis-endemic areas of the world and accounts for 20% of community-acquired septicaemias in northeastern Thailand where half of those affected die. Here we report the complete genome of B. pseudomallei, which is composed of two chromosomes of 4.07 megabase pairs and 3.17 megabase pairs, showing significant functional partitioning of genes between them. The large chromosome encodes many of the core functions associated with central metabolism and cell growth, whereas the small chromosome carries more accessory functions associated with adaptation and survival in different niches. Genomic comparisons with closely and more distantly related bacteria revealed a greater level of gene order conservation and a greater number of orthologous genes on the large chromosome, suggesting that the two replicons have distinct evolutionary origins. A striking feature of the genome was the presence of 16 genomic islands (GIs) that together made up 6.1% of the genome. Further analysis revealed these islands to be variably present in a collection of invasive and soil isolates but entirely absent from the clonally related organism B. mallei. We propose that variable horizontal gene acquisition by B. pseudomallei is an important feature of recent genetic evolution and that this has resulted in a genetically diverse pathogenic species.
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- 2004
8. Attenuated virulence and protective efficacy of a Burkholderia pseudomallei bsa type III secretion mutant in murine models of melioidosis
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Stevens, Mark P., Haque, Ashraful, Atkins, Timothy, Hill, Jim, Wood, Michael W., Easton, Anna, Nelson, Michelle, Underwood-Fowler, Cindy, Titball, Richard W., Bancroft, Gregory J., and Galyov, Edouard E.
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Mice as laboratory animals -- Research ,Pseudomonas infections -- Care and treatment ,Pseudomonas -- Research ,Biological sciences - Abstract
Melioidosis is a severe infectious disease of animals and humans caused by the Gram-negative intracellular pathogen Burkholderia pseudomallei. An Inv/Mxi-Spa-like type III protein secretion apparatus, encoded by the B. pseudomallei bsa locus, facilitates bacterial invasion of epithelial cells, escape from endocytic vesicles and intracellular survival. This study investigated the role of the Bsa type III secretion system in the pathogenesis of melioidosis in murine models. B. pseudomallei bipD mutants, lacking a component of the translocation apparatus, were found to be significantly attenuated following intraperitoneal or intranasal challenge of BALB/c mice. Furthermore, a bipD mutant was attenuated in C57BL/6 IL-12 p40-/- mice, which are highly susceptible to B. pseudomallei infection. Mutation of bipD impaired bacterial replication in the liver and spleen of BALB/c mice in the early stages of infection. B. pseudomallei mutants lacking either the type III secreted guanine nucleotide exchange factor BopE or the putative effectors BopA or BopB exhibited varying degrees of attenuation, with mutations in bopA and bopB causing a significant delay in median time to death. This indicates that bsa-encoded type III secreted proteins may act in concert to determine the outcome of B. pseudomallei infection in mice. Mice inoculated with the B. pseudomallei bipD mutant were partially protected against subsequent challenge with wild-type B. pseudomallei. However, immunization of mice with purified BipD protein was not protective.
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- 2004
9. Design and characterization of novel hybrid antimicrobial peptides based on cecropin A, LL-37 and magainin II
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Fox, Marc A., Thwaite, Joanne E., Ulaeto, David O., Atkins, Timothy P., and Atkins, Helen S.
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- 2012
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10. The lymphatic system as a potential mechanism of spread of melioidosis following ingestion of Burkholderia pseudomallei.
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Nelson, Michelle, Nunez, Alejandro, Ngugi, Sarah A., and Atkins, Timothy P.
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MELIOIDOSIS ,BURKHOLDERIA pseudomallei ,LYMPHATICS ,CERCOPITHECIDAE ,INGESTION ,SMALL intestine - Abstract
Burkholderia pseudomallei is the causative agent of melioidosis, which is a Gram negative, facultative intracellular bacterium. Disease is prevalent in SE Asia and in northern Australia, as well as in other tropical and subtropical regions. Recently, there is an increasing awareness of the importance of bacterial ingestion as a potential route of infection, particularly in cases of unexplained origin of the disease. The marmoset is a New World Monkey (NWM) species that is being developed as an alternative NHP model to complement the more traditionally used Old World Monkeys (OWM). Models have been developed for the traditional routes of disease acquisition, subcutaneous and inhalational. This manuscript details the development and characterisation of an ingestion model of melioidosis. Dose-ranging study assessed the lethality of B. pseudomallei and disease progression was assessed by euthanizing animals at predetermined time points, 12, 36, 48 and 54 hours post-challenge. Challenge doses of greater than 6.2 x 10
6 cfu resulted in an acute, lethal, febrile disease. Following challenge the lung was the first organ, outside of the gastrointestinal tract, to become colonised. Enteritis (duodenitis, ileitis and/or jejunitis) was observed in sections of the small intestine from animals that succumbed to disease. However, the most severe pathological features were observed in the mesenteric lymph nodes from these animals. These findings are consistent with lymphatic draining as route of dissemination. Author summary: Burkholderia pseudomallei is a bacteria that causes the disease melioidosis. Disease is usually caused by bacteria entering cuts in the skin or by breathing in the bacteria. But disease can also be caused by drinking water containing the bacteria, but this form of the disease is not well understand. Other researchers have looked at what happens when mice are given the bacteria via the mouth. This manuscripts looks at what happens when small monkeys, marmoset drink the bacteria. Different amounts of bacteria were given to the marmosets to determine how many bacteria are needed to cause disease. More than 6 million bacteria caused animals to have a fever and become sick enough to be euthanized. The bacteria travelled from the stomach to the intestine where there were small areas of swelling with lots of immune cells than caused damage to the tissue. The bacteria then went to the lungs really early in the disease and then spread to other parts of the body. [ABSTRACT FROM AUTHOR]- Published
- 2021
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11. A Novel Marmoset (Callithrix jacchus) Model of Human Inhalational Q Fever.
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Nelson, Michelle, Salguero, Francisco J., Hunter, Laura, and Atkins, Timothy P.
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CALLITHRIX jacchus ,Q fever ,MARMOSETS ,COXIELLA burnetii ,BACTERIAL physiology ,LIVER enzymes - Abstract
Common marmosets (Callithrix jacchus) were shown to be susceptible to inhalational infection with Coxiella burnetii , in a dose-dependent manner, producing a disease similar to human Q fever, characterized by a resolving febrile response. Illness was also associated with weight loss, liver enzyme dysfunction, characteristic cellular activation, circulating INF- γ and bacteraemia. Viable C. burnetii was recovered from various tissues during disease and from 75% of the animal's lungs on 28 days post challenge, when there were no overt clinical features of disease but there was histological evidence of macrophage and lymphocyte infiltration into the lung resulting in granulomatous alveolitis. Taken together, these features of disease progression, physiology and bacterial spread appear to be consistent with human disease and therefore the common marmoset can be considered as a suitable model for studies on the pathogenesis or the development of medical counter measures of inhalational Q fever. [ABSTRACT FROM AUTHOR]
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- 2021
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12. Comparison of PCR and Viable Count as a Method for Enumeration of Bacteria in an A/J Mouse Aerosol Model of Q Fever.
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Hartley, M. Gill, Ralph, Esther, Norville, Isobel H., Prior, Joann L., and Atkins, Timothy P.
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Q fever ,WEIGHT loss ,BACTERIAL DNA ,ANIMAL disease models ,COXIELLA burnetii ,AEROSOLS ,BACTERIAL diseases - Abstract
Historically, disease progression in animal models of Q fever has been carried out using PCR to monitor the presence of Coxiella burnetii DNA in the host. However, the colonization and dissemination of other bacterial infections in animal models are tracked using viable counts, enabling an accurate assessment of viable bacterial load within tissues. Following recent advances in the culture methods, it has become possible to do the same with C. burnetii. Here we compare and contrast the different information gained by using PCR or viable counts to study this disease. Viable bacteria were cleared from organs much faster than previously reported when assessed by bacterial DNA, but weight loss and clinical signs improved while animals were still heavily infected. [ABSTRACT FROM AUTHOR]
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- 2019
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13. An O-Antigen Glycoconjugate Vaccine Produced Using Protein Glycan Coupling Technology Is Protective in an Inhalational Rat Model of Tularemia.
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Marshall, Laura E., Nelson, Michelle, Davies, Carwyn H., Whelan, Adam O., Jenner, Dominic C., Moule, Madeleine G., Denman, Carmen, Cuccui, Jon, Atkins, Timothy P., Wren, Brendan W., and Prior, Joann L.
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VACCINE effectiveness ,GLYCOCONJUGATES ,FRANCISELLA tularensis ,TULAREMIA ,LIPOPOLYSACCHARIDES ,GLYCOSYLATION ,LABORATORY mice - Abstract
There is a requirement for an efficacious vaccine to protect people against infection from Francisella tularensis, the etiological agent of tularemia. The lipopolysaccharide (LPS) of F. tularensis is suboptimally protective against a parenteral lethal challenge in mice. To develop a more efficacious subunit vaccine, we have used a novel biosynthetic technique of protein glycan coupling technology (PGCT) that exploits bacterial N-linked glycosylation to recombinantly conjugate F. tularensis O-antigen glycans to the immunogenic carrier protein Pseudomonas aeruginosa exoprotein A (ExoA). Previously, we demonstrated that an ExoA glycoconjugate with two glycosylation sequons was capable of providing significant protection to mice against a challenge with a low-virulence strain of F. tularensis. Here, we have generated a more heavily glycosylated conjugate vaccine and evaluated its efficacy in a Fischer 344 rat model of tularemia. We demonstrate that this glycoconjugate vaccine protected rats against disease and the lethality of an inhalational challenge with F. tularensis Schu S4. Our data highlights the potential of this biosynthetic approach for the creation of next-generation tularemia subunit vaccines. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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14. An integrated computational-experimental approach reveals Yersinia pestis genes essential across a narrow or a broad range of environmental conditions.
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Senior, Nicola J., Sasidharan, Kalesh, Saint, Richard J., Scott, Andrew E., Sarkar-Tyson, Mitali, Ireland, Philip M., Bullifent, Helen L., Yang, Z. Rong, Moore, Karen, Oyston, Petra C. F., Atkins, Timothy P., Atkins, Helen S., Soyer, Orkun S., and Titball, Richard W.
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YERSINIA pestis genetics ,BIOLOGICAL weapons ,TARGETED drug delivery ,GENES - Abstract
Background: The World Health Organization has categorized plague as a re-emerging disease and the potential for Yersinia pestis to also be used as a bioweapon makes the identification of new drug targets against this pathogen a priority. Environmental temperature is a key signal which regulates virulence of the bacterium. The bacterium normally grows outside the human host at 28 °C. Therefore, understanding the mechanisms that the bacterium used to adapt to a mammalian host at 37 °C is central to the development of vaccines or drugs for the prevention or treatment of human disease. Results: Using a library of over 1 million Y. pestis CO92 random mutants and transposon-directed insertion site sequencing, we identified 530 essential genes when the bacteria were cultured at 28 °C. When the library of mutants was subsequently cultured at 37 °C we identified 19 genes that were essential at 37 °C but not at 28 °C, including genes which encode proteins that play a role in enabling functioning of the type III secretion and in DNA replication and maintenance. Using genome-scale metabolic network reconstruction we showed that growth conditions profoundly influence the physiology of the bacterium, and by combining computational and experimental approaches we were able to identify 54 genes that are essential under a broad range of conditions. Conclusions: Using an integrated computational-experimental approach we identify genes which are required for growth at 37 °C and under a broad range of environments may be the best targets for the development of new interventions to prevent or treat plague in humans. [ABSTRACT FROM AUTHOR]
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- 2017
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15. Protection against Experimental Melioidosis with a Synthetic manno-Heptopyranose Hexasaccharide Glycoconjugate.
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Scott, Andrew E., Christ, William J., George, Alison J., Stokes, Margaret G. M., Lohman, Gregory J. S., Guo, Yuhong, Jones, Matthew, Titball, Richard W., Atkins, Timothy P., Campbell, A. Stewart, and Prior, Joann L.
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- 2016
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16. Consensus on the development of vaccines against naturally acquired melioidosis.
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Limmathurotsakul, Direk, Funnell, Simon G P, Torres, Alfredo G, Morici, Lisa A, Brett, Paul J, Dunachie, Susanna, Atkins, Timothy, Altmann, Daniel M, Bancroft, Gregory, Peacock, Sharon J, and Steering Group on Melioidosis Vaccine Development
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ANIMAL experimentation ,ANIMALS ,BACTERIAL vaccines ,BIOLOGICAL models ,MELIOIDOSIS ,MICE ,RESEARCH funding ,FINANCIAL management ,BURKHOLDERIA ,PREVENTION - Abstract
Several candidates for a vaccine against Burkholderia pseudomallei, the causal bacterium of melioidosis, have been developed, and a rational approach is now needed to select and advance candidates for testing in relevant nonhuman primate models and in human clinical trials. Development of such a vaccine was the topic of a meeting in the United Kingdom in March 2014 attended by international candidate vaccine developers, researchers, and government health officials. The focus of the meeting was advancement of vaccines for prevention of natural infection, rather than for protection from the organism's known potential for use as a biological weapon. A direct comparison of candidate vaccines in well-characterized mouse models was proposed. Knowledge gaps requiring further research were identified. Recommendations were made to accelerate the development of an effective vaccine against melioidosis. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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17. Systematic Mutagenesis of Genes Encoding Predicted Autotransported Proteins of Burkholderia pseudomallei Identifies Factors Mediating Virulence in Mice, Net Intracellular Replication and a Novel Protein Conferring Serum Resistance.
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Adler, Natalie R. Lazar, Stevens, Mark P., Dean, Rachel E., Saint, Richard J., Pankhania, Depesh, Prior, Joann L., Atkins, Timothy P., Kessler, Bianca, Nithichanon, Arnone, Lertmemongkolchai, Ganjana, and Galyov, Edouard E.
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BURKHOLDERIA pseudomallei ,BACTERIAL mutation ,GENETIC code ,BACTERIAL genetics ,VIRAL replication ,SERUM ,BACTERIAL proteins - Abstract
Burkholderia pseudomallei is the causative agent of the severe tropical disease melioidosis, which commonly presents as sepsis. The B. pseudomallei K96243 genome encodes eleven predicted autotransporters, a diverse family of secreted and outer membrane proteins often associated with virulence. In a systematic study of these autotransporters, we constructed insertion mutants in each gene predicted to encode an autotransporter and assessed them for three pathogenesis-associated phenotypes: virulence in the BALB/c intra-peritoneal mouse melioidosis model, net intracellular replication in J774.2 murine macrophage-like cells and survival in 45% (v/v) normal human serum. From the complete repertoire of eleven autotransporter mutants, we identified eight mutants which exhibited an increase in median lethal dose of 1 to 2-log
10 compared to the isogenic parent strain (bcaA, boaA, boaB, bpaA, bpaC, bpaE, bpaF and bimA). Four mutants, all demonstrating attenuation for virulence, exhibited reduced net intracellular replication in J774.2 macrophage-like cells (bimA, boaB, bpaC and bpaE). A single mutant (bpaC) was identified that exhibited significantly reduced serum survival compared to wild-type. The bpaC mutant, which demonstrated attenuation for virulence and net intracellular replication, was sensitive to complement-mediated killing via the classical and/or lectin pathway. Serum resistance was rescued by in trans complementation. Subsequently, we expressed recombinant proteins of the passenger domain of four predicted autotransporters representing each of the phenotypic groups identified: those attenuated for virulence (BcaA), those attenuated for virulence and net intracellular replication (BpaE), the BpaC mutant with defects in virulence, net intracellular replication and serum resistance and those displaying wild-type phenotypes (BatA). Only BcaA and BpaE elicited a strong IFN-γ response in a restimulation assay using whole blood from seropositive donors and were recognised by seropositive human sera from the endemic area. To conclude, several predicted autotransporters contribute to B. pseudomallei virulence and BpaC may do so by conferring resistance against complement-mediated killing. [ABSTRACT FROM AUTHOR]- Published
- 2015
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18. Protection against Experimental Melioidosis following Immunisation with a Lipopolysaccharide-Protein Conjugate.
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Scott, Andrew E., Ngugi, Sarah A., Laws, Thomas R., Corser, David, Lonsdale, Claire L., D'Elia, Riccardo V., Titball, Richard W., Williamson, E. Diane, Atkins, Timothy P., and Prior, Joann L.
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MELIOIDOSIS ,IMMUNIZATION ,LIPOPOLYSACCHARIDES ,TREATMENT effectiveness ,BURKHOLDERIA pseudomallei ,TETANUS toxin ,THERAPEUTICS - Abstract
Melioidosis is a severe infectious disease caused by Burkholderia pseudomallei. It is refractory to antibiotic treatment and there is currently no licensed vaccine. In this report we detail the construction and protective efficacy of a polysaccharide-protein conjugate composed of B. pseudomallei lipopolysaccharide and the H
c fragment of tetanus toxin. Immunisation of mice with the lipopolysaccharide-conjugate led to significantly reduced bacterial burdens in the spleen 48 hours after challenge and afforded significant protection against a lethal challenge with B. pseudomallei. The conjugate generated significantly higher levels of antigen-specific IgG1 and IgG2a than in lipopolysaccharide-immunised mice. Immunisation with the conjugate also demonstrated a bias towards Th1 type responses, evidenced by high levels of IgG2a. In contrast, immunisation with unconjugated lipopolysaccharide evoked almost no IgG2a demonstrating a bias towards Th2 type responses. This study demonstrates the effectiveness of this approach in the development of an efficacious and protective vaccine against melioidosis. [ABSTRACT FROM AUTHOR]- Published
- 2014
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19. Identification of a Predicted Trimeric Autotransporter Adhesin Required for Biofilm Formation of Burkholderia pseudomallei.
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Lazar Adler, Natalie R., Dean, Rachel E., Saint, Richard J., Stevens, Mark P., Prior, Joann L., Atkins, Timothy P., and Galyov, Edouard E.
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BURKHOLDERIA pseudomallei ,BACTERIAL adhesion ,BIOFILMS ,SECRETION ,MEMBRANE proteins ,GRAM-negative bacteria - Abstract
The autotransporters are a large and diverse family of bacterial secreted and outer membrane proteins, which are present in many Gram-negative bacterial pathogens and play a role in numerous environmental and virulence-associated interactions. As part of a larger systematic study on the autotransporters of Burkholderia pseudomallei, the causative agent of the severe tropical disease melioidosis, we have constructed an insertion mutant in the bpss1439 gene encoding an unstudied predicted trimeric autotransporter adhesin. The bpss1439 mutant demonstrated a significant reduction in biofilm formation at 48 hours in comparison to its parent 10276 wild-type strain. This phenotype was complemented to wild-type levels by the introduction of a full-length copy of the bpss1439 gene in trans. Examination of the wild-type and bpss1439 mutant strains under biofilm-inducing conditions by microscopy after 48 hours confirmed that the bpss1439 mutant produced less biofilm compared to wild-type. Additionally, it was observed that this phenotype was due to low levels of bacterial adhesion to the abiotic surface as well as reduced microcolony formation. In a murine melioidosis model, the bpss1439 mutant strain demonstrated a moderate attenuation for virulence compared to the wild-type strain. This attenuation was abrogated by in trans complementation, suggesting that bpss1439 plays a subtle role in the pathogenesis of B. pseudomallei. Taken together, these studies indicate that BPSS1439 is a novel predicted autotransporter involved in biofilm formation of B. pseudomallei; hence, this factor was named BbfA, Burkholderia biofilm factor A. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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20. In Vivo Manipulation of γ9+ T Cells in the Common Marmoset (Callithrix Jacchus) with Phosphoantigen and Effect on the Progression of Respiratory Melioidosis.
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Laws, Thomas R., Nelson, Michelle, Bonnafous, Cecile, Sicard, Helene, Taylor, Christopher, Salguero, Francisco Javier, Atkins, Timothy P., Oyston, Petra C. F., and Rowland, Caroline A.
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CALLITHRIX jacchus ,T cells ,RESPIRATORY diseases ,DISEASE progression ,IMMUNOTHERAPY - Abstract
Burkholderia pseudomallei is a dangerous human pathogen. Phosphoantigens specifically the target primate specific γ9
+ δ2+ T cells subset and some have been developed as potential immunotherapeutics. Previously, we demonstrated that, when stimulated with the phosphoantigen CHDMAPP, γ9+ δ2+ T cells aid in the killing of intracellular B. pseudomallei bacteria. Moreover, we found that common marmoset (Callithrix Jacchus) γ9+ T cells increase in frequency and respond to the phosphoantigen CHDMAPP and/or B. pseudomallei, in combination with IL-2, in a similar manner to human γ9+ δ2+ T cells. Here we evaluate the efficacy of the phosphoantigen CHDMAPP, in combination with IL-2, as a therapy against B. pseudomallei infection, in vivo. We found that the previous studies predicted the in vivo responsiveness of γ9+ T cells to the CHDMAPP+IL-2 treatment and significant expansion of the numbers of peripheral and splenic γ9+ T cells were observed. This effect was similar to those reported in other primate species treated with phosphoantigen. Furthermore, splenocytes were retrieved 7 days post onset of treatment, restimulated with CHDMAPP or heat-killed B. pseudomallei and the cultured γ9+ T cells demonstrated no reduction in IFN-γ response when CHDMAPP+IL-2 animals were compared to IL-2 only treated animals. Using an established model of B. pseudomallei infection in the marmoset, we assessed the potential for using phosphoantigen as a novel immunotherapy. The CHDMAPP treatment regime had no effect on the progression of respiratory melioidosis and this was despite the presence of elevated numbers of γ9+ T cells in the spleen, liver and lung and an increased proportion of IFN-γ+ cells in response to infection. We therefore report that the common marmoset has proven a good model for studying the effect in vivo of γ9+ T cell stimulation; however, γ9+ T cells have little or no effect on the progression of lethal, respiratory B. pseudomallei infection. [ABSTRACT FROM AUTHOR]- Published
- 2013
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21. A Genomic Survey of Positive Selection in Burkholderia pseudomallei Provides Insights into the Evolution of Accidental Virulence.
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Nandi, Tannistha, Ong, Catherine, Pratap Singh, Arvind, Boddey, Justin, Atkins, Timothy, Sarkar-Tyson, Mitali, Essex-Lopresti, Angela E., Hui Hoon Chua, Pearson, Talima, Kreisberg, Jason F., Nilsson, Christina, Ariyaratne, Pramila, Ronning, Catherine, Losada, Liliana, Yijun Ruan, Wing-Kin Sung, Woods, Donald, Titball, Richard W., Beacham, Ifor, and Peak, Ian
- Abstract
Certain environmental microorganisms can cause severe human infections, even in the absence of an obvious requirement for transition through an animal host for replication ("accidental virulence"). To understand this process, we compared eleven isolate genomes of Burkholderia pseudomallei (Bp), a tropical soil microbe and causative agent of the human and animal disease melioidosis. We found evidence for the existence of several new genes in the Bp reference genome, identifying 282 novel genes supported by at least two independent lines of supporting evidence (mRNA transcripts, database homologs, and presence of ribosomal binding sites) and 81 novel genes supported by all three lines. Within the Bp core genome, 211 genes exhibited significant levels of positive selection (4.5%), distributed across many cellular pathways including carbohydrate and secondary metabolism. Functional experiments revealed that certain positively selected genes might enhance mammalian virulence by interacting with host cellular pathways or utilizing host nutrients. Evolutionary modifications improving Bp environmental fitness may thus have indirectly facilitated the ability of Bp to colonize and survive in mammalian hosts. These findings improve our understanding of the pathogenesis of melioidosis, and establish Bp as a model system for studying the genetics of accidental virulence. [ABSTRACT FROM AUTHOR]
- Published
- 2010
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22. The nematode Panagrellus redivivus is susceptible to killing by human pathogens at 37°C
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Laws, Thomas R., Smith, Simon A., Smith, Martin P., Harding, Sarah V., Atkins, Timothy P., and Titball, Richard W.
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CAENORHABDITIS elegans ,PROKARYOTES ,FUNGUS-bacterium relationships ,ENTEROBACTERIACEAE - Abstract
Abstract: Caenorhabditis elegans has been used as a host for the study of bacteria that cause disease in mammals. However, a significant limitation of the model is that C. elegans is not viable at 37°C. We report that the gonochoristic nematode Panagrellus redivivus survives at 37°C and maintains its life cycle at temperatures up to and including 31.5°C. The C. elegans pathogens Pseudomonas aeruginosa, Salmonella enterica, Staphylococcus aureus, but not Yersinia pseudotuberculosis, reduced P. redivivus lifespan. Of four strains of Burkholderia multivorans tested, one reduced P. redivivus lifespan at both temperatures, one was avirulent at both temperatures and two strains reduced P. redivivus lifespan only at 37°C. The mechanism by which one of these strains killed P. redivivus at 37°C, but not at 25°C, was investigated further. Killing required viable bacteria, did not involve bacterial invasion of tissues, is unlikely to be due to a diffusible, bacterial toxin and was not associated with increased numbers of live bacteria within the intestine of the worm. We believe B. multivorans may kill P. redivivus by a temperature-regulated mechanism similar to B. pseudomallei killing of C. elegans. [Copyright &y& Elsevier]
- Published
- 2005
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23. Age influences resistance of Caenorhabditis elegans to killing by pathogenic bacteria
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Laws, Thomas R., Harding, Sarah V., Smith, Martin P., Atkins, Timothy P., and Titball, Richard W.
- Subjects
CAENORHABDITIS elegans ,PATHOGENIC bacteria ,AGE ,PATHOGENIC microorganisms - Abstract
Caenorhabditis elegans has previously been proposed as an alternative host for models of infectious disease caused by human pathogens. When exposed to some human pathogenic bacteria, the life span of nematodes is significantly reduced. We have shown that mutations in the age-1, and/or age-2 genes of C. elegans, that normally enhance life expectancy, can also increase resistance to killing by the bacterial pathogens Pseudomonas aeruginosa, Salmonella enterica var. Typhimurium, Burkholderia cepacia or Yersinia pseudotuberculosis. We also found that the rate at which wild-type C. elegans was killed by the bacterial pathogens tested increased as nematodes aged. In the case of P. aeruginosa infection, the difference in life span of wild type and age-1 mutants of C. elegans was not due to differences in the level of bacterial colonisation of the gut. [Copyright &y& Elsevier]
- Published
- 2004
- Full Text
- View/download PDF
24. A liquid-based method for the assessment of bacterial pathogenicity using the nematode Caenorhabditis elegans
- Author
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Smith, Martin P., Laws, Thomas R., Atkins, Timothy P., Oyston, Petra C.F., de Pomerai, David I., and Titball, Richard W.
- Subjects
CAENORHABDITIS elegans ,PATHOGENIC microorganisms - Abstract
Caenorhabditis elegans has previously been used as an alternative to mammalian models of infection with bacterial pathogens. We have developed a liquid-based assay to measure the effect of bacteria on the feeding ability of C. elegans. Using this assay we have shown that Pseudomonas aeruginosa strain PA14, Burkholderia pseudomallei and Yersinia pestis were able to inhibit feeding of C. elegans strain N2. An increase in sensitivity of the assay was achieved by using C. elegans mutant phm-2, in place of the wild-type strain. Using this assay,P. aeruginosa PA01 inhibited the feeding of C. elegans mutant phm-2. Such liquid-based feeding assays are ideally suited to the high-throughput screening of mutants of bacterial pathogens. [Copyright &y& Elsevier]
- Published
- 2002
- Full Text
- View/download PDF
25. A Noise Trimming and Positional Significance of Transposon Insertion System to Identify Essential Genes in Yersinia pestis.
- Author
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Yang, Zheng Rong, Bullifent, Helen L., Moore, Karen, Paszkiewicz, Konrad, Saint, Richard J., Southern, Stephanie J., Champion, Olivia L., Senior, Nicola J., Sarkar-Tyson, Mitali, Oyston, Petra C. F., Atkins, Timothy P., and Titball, Richard W.
- Abstract
Massively parallel sequencing technology coupled with saturation mutagenesis has provided new and global insights into gene functions and roles. At a simplistic level, the frequency of mutations within genes can indicate the degree of essentiality. However, this approach neglects to take account of the positional significance of mutations - the function of a gene is less likely to be disrupted by a mutation close to the distal ends. Therefore, a systematic bioinformatics approach to improve the reliability of essential gene identification is desirable. We report here a parametric model which introduces a novel mutation feature together with a noise trimming approach to predict the biological significance of Tn5 mutations. We show improved performance of essential gene prediction in the bacterium Yersinia pestis, the causative agent of plague. This method would have broad applicability to other organisms and to the identification of genes which are essential for competitiveness or survival under a broad range of stresses. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
26. The pathogen Pseudomonas aeruginosa negatively affects the attraction response of the nematode Caenorhabditis elegans to bacteria
- Author
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Laws, Thomas R., Atkins, Helen S., Atkins, Timothy P., and Titball, Richard W.
- Subjects
- *
PSEUDOMONAS aeruginosa , *FUNGUS-bacterium relationships , *IMMUNE system , *CHLORAMPHENICOL - Abstract
Abstract: The nematode Caenorhabditis elegans has previously been used to identify virulence mechanisms of bacteria and to characterise host responses to infection. In this study, we have developed an assay to measure C. elegans attraction to bacterial food sources. C. elegans becomes less attracted to the bacterial pathogen Pseudomonas aeruginosa strain PA14 over time, but this response is not seen with P. aeruginosa strains PAK1 or PA01. P. aeruginosa strain PA14 cells that had been killed by UV light, or which had been exposed to chloramphenicol, did not mediate this effect. We therefore propose that C. elegans reacts to a factor produced by P. aeruginosa strain PA14. [Copyright &y& Elsevier]
- Published
- 2006
- Full Text
- View/download PDF
27. Identification of a Predicted Trimeric Autotransporter Adhesin Required for Biofilm Formation of Burkholderia pseudomallei.
- Author
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Lazar Adler, Natalie R., Dean, Rachel E., Saint, Richard J., Stevens, Mark P., Prior, Joann L., Atkins, Timothy P., and Galyov, Edouard E.
- Subjects
- *
BURKHOLDERIA pseudomallei , *BACTERIAL adhesion , *BIOFILMS , *SECRETION , *MEMBRANE proteins , *GRAM-negative bacteria - Abstract
The autotransporters are a large and diverse family of bacterial secreted and outer membrane proteins, which are present in many Gram-negative bacterial pathogens and play a role in numerous environmental and virulence-associated interactions. As part of a larger systematic study on the autotransporters of Burkholderia pseudomallei, the causative agent of the severe tropical disease melioidosis, we have constructed an insertion mutant in the bpss1439 gene encoding an unstudied predicted trimeric autotransporter adhesin. The bpss1439 mutant demonstrated a significant reduction in biofilm formation at 48 hours in comparison to its parent 10276 wild-type strain. This phenotype was complemented to wild-type levels by the introduction of a full-length copy of the bpss1439 gene in trans. Examination of the wild-type and bpss1439 mutant strains under biofilm-inducing conditions by microscopy after 48 hours confirmed that the bpss1439 mutant produced less biofilm compared to wild-type. Additionally, it was observed that this phenotype was due to low levels of bacterial adhesion to the abiotic surface as well as reduced microcolony formation. In a murine melioidosis model, the bpss1439 mutant strain demonstrated a moderate attenuation for virulence compared to the wild-type strain. This attenuation was abrogated by in trans complementation, suggesting that bpss1439 plays a subtle role in the pathogenesis of B. pseudomallei. Taken together, these studies indicate that BPSS1439 is a novel predicted autotransporter involved in biofilm formation of B. pseudomallei; hence, this factor was named BbfA, Burkholderia biofilm factor A. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
28. The Cell Membrane as a Major Site of Damage during Aerosolization of Escherichia coli.
- Author
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Thomas, Richard J., Webber, Daniel, Hopkins, Rebecca, Frost, Andrew, Laws, Thomas, Jayasekera, Pramukh N., and Atkins, Timothy
- Subjects
- *
CELL membranes , *ESCHERICHIA coli physiology , *HOMEOSTASIS , *AEROSOLS , *CYTOCHROME oxidase , *EQUIPMENT & supplies - Abstract
This study aimed to provide data on the survival and site of damage of Escherichia coli cells following aerosolization using two different techniques, nebulization and flow focusing. Four metabolic stains were assessed for their ability to detect respiratory activities and membrane homeostasis in aerosolized E. coli cells. The degree of sublethal injury increased significantly over the 10-min period of aerosolization in E. coli cells aerosolized by using the Collison nebulizer, reaching up to 99.9% of the population. In contrast, a significantly lower proportion of the population was sublethally damaged during aerosolization using the flow-focusing aerosol generator (FFAG). Concomitantly, loss of membrane homeostasis increased at a higher rate in nebulized cells (68 to 71%) than in those aerosolized by using the FFAG (32 to 34%). The activities of respiratory enzymes decreased at increased rates in nebulized cells (27 to 37%) compared to the rates of decrease in cells aerosolized by using the FFAG (59 to 61%). The results indicate that the physiology of an aerosolized bacterium is linked to the method of aerosol generation and may affect the interpretation of a range of aerobiological phenomenon. [ABSTRACT FROM AUTHOR]
- Published
- 2011
- Full Text
- View/download PDF
29. Lipopolysaccharide from Burkholderia thailandensis E264 provides protection in a murine model of melioidosis
- Author
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Ngugi, Sarah A., Ventura, Valeria V., Qazi, Omar, Harding, Sarah V., Kitto, G. Barrie, Estes, D. Mark, Dell, Anne, Titball, Richard W., Atkins, Timothy P., Brown, Katherine A., Hitchen, Paul G., and Prior, Joann L.
- Subjects
- *
BURKHOLDERIA infections , *GRAM-negative bacteria , *MELIOIDOSIS , *ENDOTOXINS , *LABORATORY mice , *POLYSACCHARIDES , *SUGAR analysis , *IMMUNIZATION - Abstract
Abstract: Burkholderia thailandensis is a less virulent close relative of Burkholderia pseudomallei, a CDC category B biothreat agent. We have previously shown that lipopolysaccharide (LPS) extracted from B. pseudomallei can provide protection against a lethal challenge of B. pseudomallei in a mouse model of melioidosis. Sugar analysis on LPS from B. thailandensis strain E264 confirmed that this polysaccharide has a similar structure to LPS from B. pseudomallei. Mice were immunised with LPS from B. thailandensis or B. pseudomallei and challenged with a lethal dose of B. pseudomallei strain K96243. Similar protection levels were observed when either LPS was used as the immunogen. This data suggests that B. thailandensis LPS has the potential to be used as part of a subunit based vaccine against pathogenic B. pseudomallei. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
30. Protective efficacy of heat-inactivated B. thailandensis, B. mallei or B. pseudomallei against experimental melioidosis and glanders
- Author
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Sarkar-Tyson, Mitali, Smither, Sophie J., Harding, S.V., Atkins, Timothy. P., and Titball, Richard. W.
- Subjects
- *
DRUG efficacy , *MELIOIDOSIS , *GRAM-negative bacteria , *BACTERIAL vaccines , *DISEASE susceptibility , *BACTERIAL disease prevention , *DRUG dosage - Abstract
Abstract: Burkholderia pseudomallei and Burkholderia mallei are gram-negative bacilli that are the causative agents of melioidosis and glanders, respectively. Both humans and animals are susceptible to both diseases. There is currently no vaccine available for the prevention of disease. We report the protective efficacy of heat-inactivated Burkholderia thailandensis, B. mallei or B. pseudomallei cells as vaccines against murine melioidosis and glanders. Immunisation with heat-inactivated B. pseudomallei cells provided the highest levels of protection against either melioidosis or glanders. These studies indicate the longer term potential for heat-inactivated bacteria to be developed as vaccines against melioidosis and glanders. [Copyright &y& Elsevier]
- Published
- 2009
- Full Text
- View/download PDF
31. Flagellar Glycosylation in Burkholderia pseudomallei and Burkholderia thailandensis.
- Author
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Scott, Andrew E., Twine, Susan M., Fulton, Kelly M., Titball, Richard W., Essex-Lopresti, Angela E., Atkins, Timothy P., and Prior, Joann L.
- Subjects
- *
GLYCOSYLATION , *BURKHOLDERIA , *PROKARYOTES , *PROTEOMICS , *BACTERIAL genetics , *MASS spectrometry - Abstract
Glycosylation of proteins is known to impart novel physical properties and biological roles to proteins from both eukaryotes and prokaryotes. In this study, gel-based glycoproteomics were used to identify glycoproteins of the potential biothreat agent Burkholderia pseudomallei and the closely related but nonpathogenic B. thailandensis. Top-down and bottom-up mass spectrometry (MS) analyses identified that the flagellin proteins of both species were posttranslationally modified by novel glycans. Analysis of proteins from two strains of each species demonstrated that B. pseudomallei flagellin proteins were modified with a glycan with a mass of 291 Da, while B. thailandensis flagellin protein was modified with related glycans with a mass of 300 or 342 Da. Structural characterization of the B. thailandensis carbohydrate moiety suggests that it is an acetylated hexuronic acid. In addition, we have identified through mutagenesis a gene from the lipopolysaccharide (LPS) O-antigen biosynthetic cluster which is involved in flagellar glycosylation, and inactivation of this gene eliminates flagellar glycosylation and motility in B. pseudomallei. This is the first report to conclusively demonstrate the presence of a carbohydrate covalently linked to a protein in B. pseudomallei and B. thailandensis, and it suggests new avenues to explore in order to examine the marked differences in virulence between these two species. [ABSTRACT FROM AUTHOR]
- Published
- 2011
- Full Text
- View/download PDF
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