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The study presents a general overview of the healthcare facility system of the Slovak Republic, especially in a field of the innovation process of the management information system, with a purpose of analysing the consistency and a unity of the system. The data applied in this analysis is collected as a part of the Gesiti research project. This project is developed for mapping out the management of an information system and information technology in healthcare facilities around the whole world. The main goal of the project is to identify the needs and the demands of the healthcare facilities and to create an integrated research report with a focus on a report research roadmap. The information and communication technologies that are applied are partially unsuitable in the healthcare facilities in the Slovak Republic. Information systems are used without exact plans of their future development. This makes it almost impossible to develop them according to the modern needs and to join them with the other systems that are currently used. The big issues also lie in financing these systems and the personnel responsible for them. The outcome of the analysis should create a direction for financial decision making support and for better management of the healthcare facilities, both in the public and the private sector. [ABSTRACT FROM AUTHOR]