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Introduction: Current eggplant variety breeding is still mainly based on conventional methods, and there remains a lack of effective molecular breeding systems for complex traits controlled by multiple genes, such as yield and quality. To accelerate the research progress of eggplant genetics and molecular breeding, it is necessary to implement a genome-based breeding strategy. Methods: Therefore, in this study, a SNP array containing 50K liquid-phase probes was designed on the basis of the resequencing data of 577 eggplants. Results: The developed 50K liquid-phase probes were used to perform targeted capture sequencing on 12 eggplant lines, and the efficiency of probe capture exceeded 99.25%. Principal component, phylogenetic, and population structure analyses divided the 577 eggplants into 7 subgroups, and statistical analysis was performed on the fruit shape and color of the materials in the different subgroups. Further analysis of the geographical distribution of 428 Chinese eggplant materials revealed that the geographical regions of different subgroups were similar. The 50K SNP liquid-phase array was used to perform bulked- segregant analysis combined with whole-genome resequencing (BSA-seq) of fruit shape in the F2 population, which consisted of 1435 lines constructed with E421 as the maternal parent and 145 as the paternal parent. The BSA-seq data were located in the 78444173−84449348 interval on chromosome 3, with a size of 6 Mb, which was narrowed to 712.6 kb through fine mapping. Further sequence alignment and expression analysis revealed SmIQD14 as a candidate gene controlling eggplant fruit shape. The 50K SNP liquid-phase array can be widely used in future eggplant molecular breeding research. [ABSTRACT FROM AUTHOR]

The shape of fruits is a critical trait affecting the commercial value and consumer acceptance of horticultural crops. Genetic regulation of fruit shape involves complex interactions among multiple genes and environmental factors. This review summarizes recent advances in understanding the genetic mechanisms controlling fruit shape in several key horticultural crops, including tomato, pepper, cucumber, peach, and grape. We present the identification and characterization of genes and quantitative trait loci (QTLs) that influence fruit shape, focusing on the roles of genes such as OVATE, SUN, FAS, LC, ENO, GLOBE, CsSUN, CsFUL1, CsCRC, PpCAD1, PpOFP1, and VvSUN. This review highlights the importance of hormonal pathways, particularly those involving synthesis and concentration of cytokinins and brassinosteroids in shaping fruit morphology, and explores how these genes interact and form regulatory networks that collectively determine the final fruit shape. This knowledge provides a foundation for developing strategies to improve fruit quality and yield through genetic modification and breeding programs. [ABSTRACT FROM AUTHOR]

Goji berries are a small-fruited shrub with industrial importance whose fruit considered beneficial in both fresh and dried forms. Current germplasms of goji berries include small fruits with a short shelf life, less sweet and bitter taste, and a lack of appropriate genetic information. This study aimed to employ whole genome resequencing to generate an ultra-dense bin linkage map and to elucidate the genetic basis of goji fruit quality and size using quantitative trait loci (QTL) mapping analysis in a cross-pollinated hybrid population. To achieve this goal, human sensory tests were carried out to determine the bitter taste (BT) and sweet taste (ST), and to quantify the soluble solid content (SSC), fruit firmness (FF), and fruit size-related traits of fresh goji fruits over three or four years. The results revealed that the goji bin linkage map based on resequencing spanned a total length of 966.42 cM and an average bin interval of 0.03 cM. Subsequent variant calling and ordering resulted in 3,058 bins containing 35,331 polymorphic markers across 12 chromosomes. A total of 99 QTLs, with individual loci in different environments explaining a phenotypic variance of 1.21-16.95% were identified for the studied traits. Ten major effects, including colocalized QTLs corresponding to different traits, were identified on chromosomes 1, 3, 5, 6, 7, and 8, with a maximum Logarithm of Odds (LOD) of 29.25 and 16.95% of explained phenotypic variance (PVE). In addition, four stable loci, one for FF, one for fruit weight (FW), and two for fruit shape index (FSI), were mainly mapped on chromosomes 5, 6, and 7, elucidating 2.10-16.95% PVE. These findings offer valuable insights into the genetic architecture of goji fruit traits along with identified specific loci and markers to further improve and develop sweeter, less bitter and larger fruited goji berry cultivars with extended shelf life. [ABSTRACT FROM AUTHOR]

Cucumber (Cucumis sativus L.) is a vital economic vegetable crop, and the TONNEAU1 Recruiting Motif (TRM) gene plays a key role in cucumber organ growth. However, the pan-genomic characteristics of the TRM gene family and their expression patterns under different stresses have not been reported in cucumber. In this study, we identified 29 CsTRMs from the pan-genomes of 13 cucumber accessions, with CsTRM29 existing only in PI183967. Most CsTRM proteins exhibited differences in sequence length, except five CsTRMs having consistent protein sequence lengths among the 13 accessions. All CsTRM proteins showed amino acid variations. An analysis of CsTRM gene expression patterns revealed that six CsTRM genes strongly changed in short-fruited lines compared with long-fruited lines. And four CsTRM genes strongly responded to salt and heat stress, while CsTRM14 showed responses to salt stress, powdery mildew, gray mold, and downy mildew. Some CsTRM genes were induced or suppressed at different treatment timepoints, suggesting that cucumber TRM genes may play different roles in responses to different stresses, with expression patterns varying with stress changes. Remarkably, the expression of CsTRM21 showed considerable change between long and short fruits and in responses to abiotic stresses (salt stress and heat stress), as well as biotic stresses (powdery mildew and gray mold), suggesting a dual role of CsTRM21 in both fruit shape determination and stress resistance. Collectively, this study provided a base for the further functional identification of CsTRM genes in cucumber plant growth and stress resistance. [ABSTRACT FROM AUTHOR]

Pepper (Capsicum spp.) has a long domestication history and has accumulated diverse fruit shape variations. The illustration of the mechanisms underlying different fruit shape is not only important for clarifying the regulation of pepper fruit development but also critical for fully understanding the plant organ morphogenesis. Thus, in this study, morphological, histological and transcriptional investigations have been performed on pepper accessions bearing fruits with five types of shapes. From the results it can be presumed that pepper fruit shape was determined during the developmental processes before and after anthesis, and the anthesis was a critical developmental stage for fruit shape determination. Ovary shape index variations of the studied accessions were mainly due to cell number alterations, while, fruit shape index variations were mainly attributed to the cell division and cell expansion variations. As to the ovary wall thickness and pericarp thickness, they were regulated by both cell division in the abaxial-adaxial direction and cell expansion in the proximal-distal and medio-lateral directions. Transcriptional analysis discovered that the OFP-TRM and IQD-CaM pathways may be involved in the regulation of the slender fruit shape and the largest ovary wall cell number in the blocky-shaped accession can be attributed to the higher expression of CYP735A1, which may lead to an increased cytokinin level. Genes related to development, cell proliferation/division, cytoskeleton, and cell wall may also contribute to the regulation of helical growth in pepper. The insights gained from this study are valuable for further investigations into pepper fruit shape development. [ABSTRACT FROM AUTHOR]

One of the main reasons for the low yield of Camellia oleifera Abel is the large number of flowers and fruits that fall off before ripening. The aim of this study was to investigate the effect of foliar spraying of potassium dihydrogen phosphate (KH2PO4) on the fruiting characteristics of C. oleifera, and to provide technical support for its flower and fruit preservation and yield increasing. Three C. oleifera cultivars, 'Changlin 18', 'Changlin 166', and 'Changlin 40', were used as experimental materials to conduct foliar spraying experiments with different water concentrations of KH2PO4. The effects of KH2PO4 on the fruit retention rate, fruit properties, and seed oil quality of each cultivar were measured and analyzed. The application of the optimal concentration of KH2PO4 significantly enhanced various fruit quality metrics of three C. oleifera cultivars. Specifically, the total fruit retention rate was increased by 30.02~87.53%, the transverse diameter by 7.36~21.21%, and the longitudinal diameter by 18.56%, and the fruit weight of 'Changlin 40' could increase by 83.63%. It also increased dry seed yield by 27.87~80.81%, dry kernel rate by 10.29~30.12%, dry seed oil content by 28.00~29.77%, total unsaturated fatty acids (TUFAs) by 0.63~5.3%, monounsaturated fatty acids (MUFAs) by 0.30~5.37%, and squalene by 0.09~0.14% during the maturing stage. However, camellia cultivars had the different responses to KH2PO4 concentrations. To promote the fruiting of C. oleifera, improve the economic traits of fruits, and enhance the quality of tea oil, the recommended concentrations of KH2PO4 solution are 4.50 g·L−1, 1.50 g·L−1, and 1.50 g·L−1, for mist spraying on the trees of 'Changlin 18', 'Changlin 166', and 'Changlin 40', respectively. For mixed cultivars of C. oleifera which planted randomly, the recommended concentration range of KH2PO4 solution for spraying is 1.50 to 4.50 g·L−1. [ABSTRACT FROM AUTHOR]

IntroductionCurrent eggplant variety breeding is still mainly based on conventional methods, and there remains a lack of effective molecular breeding systems for complex traits controlled by multiple genes, such as yield and quality. To accelerate the research progress of eggplant genetics and molecular breeding, it is necessary to implement a genome-based breeding strategy.MethodsTherefore, in this study, a SNP array containing 50K liquid-phase probes was designed on the basis of the resequencing data of 577 eggplants.ResultsThe developed 50K liquid-phase probes were used to perform targeted capture sequencing on 12 eggplant lines, and the efficiency of probe capture exceeded 99.25%. Principal component, phylogenetic, and population structure analyses divided the 577 eggplants into 7 subgroups, and statistical analysis was performed on the fruit shape and color of the materials in the different subgroups. Further analysis of the geographical distribution of 428 Chinese eggplant materials revealed that the geographical regions of different subgroups were similar. The 50K SNP liquid-phase array was used to perform bulked- segregant analysis combined with whole-genome resequencing (BSA-seq) of fruit shape in the F2 population, which consisted of 1435 lines constructed with E421 as the maternal parent and 145 as the paternal parent. The BSA-seq data were located in the 78444173−84449348 interval on chromosome 3, with a size of 6 Mb, which was narrowed to 712.6 kb through fine mapping. Further sequence alignment and expression analysis revealed SmIQD14 as a candidate gene controlling eggplant fruit shape. The 50K SNP liquid-phase array can be widely used in future eggplant molecular breeding research.

Abstract Background Fruit appearance of apple (Malus domestica Borkh.) is accession-specific and one of the main criteria for consumer choice. Consequently, fruit appearance is an important selection criterion in the breeding of new cultivars. It is also used for the description of older varieties or landraces. In commercial apple production, sorting devices are used to classify large numbers of fruit from a few cultivars. In contrast, the description of fruit from germplasm collections or breeding programs is based on only a few fruit from many accessions and is mostly performed visually by pomology experts. Such visual ratings are laborious, often difficult to compare and remain subjective. Results Here we report on a morphometric device, the FruitPhenoBox, for automated fruit weighing and appearance description using computer-based analysis of five images per fruit. Recording of approximately 100 fruit from each of 15 apple cultivars using the FruitPhenoBox was rapid, with an average handling and recording time of less than eleven seconds per fruit. Comparison of fruit images from the 15 apple cultivars identified significant differences in shape index, fruit width, height and weight. Fruit shape was characteristic for each cultivar, while fruit color showed larger variation within sample sets. Assessing a subset of 20 randomly selected fruit per cultivar, fruit height, width and weight were described with a relative margin of error of 2.6%, 2.2%, and 6.2%, respectively, calculated from the mean value of all available fruit. Conclusions The FruitPhenoBox allows for the rapid and consistent description of fruit appearance from individual apple accessions. By relating the relative margin of error for fruit width, height and weight description with different sample sizes, it was possible to determine an appropriate fruit sample size to efficiently and accurately describe the recorded traits. Therefore, the FruitPhenoBox is a useful tool for breeding and the description of apple germplasm collections.

In modern agricultural production, where a small number of commercial cultivars dominate, the collection, evaluation, and preservation of germplasm are important tasks to reduce the erosion of genes and preserve biodiversity. The aim of this study is to characterize the morphological and fruit chemical properties of the pomegranate germplasm grown on the East Adriatic coast, including the commercial cultivars 'Hicaznar', 'Granada', and 'Wonderful', and to highlight the characteristics with the greatest discriminating power. The characterization of the tree, leaf, flower, arils, seed, and juice was carried out using the UPOV descriptor. The colors of the peel, arils, and juice were analyzed according to the CIEL*a*b* method, total soluble solids were measured using refractometers, and total acidity was determined by titration with 0.1 M NaOH. The research results showed significant diversity between the cultivars, which were grouped into several clusters using an unsupervised analysis technique. Factors such as plant vigor, plant growth habit, predominant number of leaves per node on young shoots, crown type, fruit shape, fruit shape in cross-section, peel weight, total aril weight, aril weight, number of arils per fruit, seed length and width, seed yield, total acidity, TSS/TA ratio, and color parameters of the peel, arils, and juice showed high variability, indicating their strong discriminating power in determining the phenotypic diversity of pomegranate. [ABSTRACT FROM AUTHOR]

Limited variability in commercially cultivated eggplant spp. has led to the exploration of traditional and cultivated varietal collections as an important strategy for the development of superior-quality hybrids with effective biodiversity conservation. Five parents and 20 F1s of eggplant were characterized using 12 quantitative traits. The fruits were segregated into two groups; i.e., based on their skin colour (purple, striped, and green) and shape (long, round, oblong) while the variation for selected quantitative traits were observed across the germplasm. Analysis of variance revealed a wide range of variability for the traits. Marketable yield per plant was significantly correlated with the number of marketable fruits per plant, harvest duration and number of marketable fruits per node indicating that direct selection based on these parameters might be sufficient for the improvement of other traits which were independent. The first three principal components explained approximately 85.7% of the total variation in eggplant for 12 quantitative traits. Research on the inheritance of fruit colour revealed the presence of a duplicate type of gene action and monogenic inheritance in the crosses viz., Res-2 × Arka Nidhi and Hisar Shyamal × Res-1, respectively. However, duplicate and inhibitory types of gene action were observed in Hisar Shyamal × Res-1 and Arka Nidhi × Hisar Shyamal, respectively, for the fruit shape. Hence, for a particular cross based on overall performance, fruit colour and fruit shape, a specific breeding strategy should be adopted to develop superior hybrids with diverse features. [ABSTRACT FROM AUTHOR]

Background: Fruit appearance of apple (Malus domestica Borkh.) is accession-specific and one of the main criteria for consumer choice. Consequently, fruit appearance is an important selection criterion in the breeding of new cultivars. It is also used for the description of older varieties or landraces. In commercial apple production, sorting devices are used to classify large numbers of fruit from a few cultivars. In contrast, the description of fruit from germplasm collections or breeding programs is based on only a few fruit from many accessions and is mostly performed visually by pomology experts. Such visual ratings are laborious, often difficult to compare and remain subjective. Results: Here we report on a morphometric device, the FruitPhenoBox, for automated fruit weighing and appearance description using computer-based analysis of five images per fruit. Recording of approximately 100 fruit from each of 15 apple cultivars using the FruitPhenoBox was rapid, with an average handling and recording time of less than eleven seconds per fruit. Comparison of fruit images from the 15 apple cultivars identified significant differences in shape index, fruit width, height and weight. Fruit shape was characteristic for each cultivar, while fruit color showed larger variation within sample sets. Assessing a subset of 20 randomly selected fruit per cultivar, fruit height, width and weight were described with a relative margin of error of 2.6%, 2.2%, and 6.2%, respectively, calculated from the mean value of all available fruit. Conclusions: The FruitPhenoBox allows for the rapid and consistent description of fruit appearance from individual apple accessions. By relating the relative margin of error for fruit width, height and weight description with different sample sizes, it was possible to determine an appropriate fruit sample size to efficiently and accurately describe the recorded traits. Therefore, the FruitPhenoBox is a useful tool for breeding and the description of apple germplasm collections. [ABSTRACT FROM AUTHOR]

Fruit shape is an important external feature when consumers choose their preferred fruit varieties. Studying persimmon (Diospyros kaki Thunb.) fruit shape is beneficial to increasing its commodity value. However, research on persimmon fruit shape is still in the initial stage. In this study, the mechanism of fruit shape formation was studied by cytological observations, phytohormone assays, and transcriptome analysis using the long fruit and flat fruit produced by 'Yaoxianwuhua' hermaphroditic flowers. The results showed that stage 2–3 (June 11–June 25) was the critical period for persimmon fruit shape formation. Persimmon fruit shape is determined by cell number in the transverse direction and cell length in the longitudinal direction. High IAA, GA4, ZT, and BR levels may promote long fruit formation by promoting cell elongation in the longitudinal direction, and high GA3 and ABA levels may be more conducive to flat fruit formation by increasing the cell number in the transverse direction and inhibiting cell elongation in the longitudinal direction, respectively. Thirty-two DEGs related to phytohormone biosynthesis and signaling pathways and nine DEGs related to cell division and cell expansion may be involved in the persimmon fruit shape formation process. These results provide valuable information for regulatory mechanism research on persimmon fruit formation. [ABSTRACT FROM AUTHOR]

Jujube (Ziziphus jujuba) exhibits a rich diversity in fruit shape, with natural occurrences of gourd-like, flattened, and other special shapes. Despite the ongoing research into fruit shape, studies integrating elliptical Fourier descriptors (EFDs) with both Short Time-series Expression Miner (STEM) and weighted gene co-expression network analysis (WGCNA) for gene discovery remain scarce. In this study, six cultivars of jujube fruits with distinct shapes were selected, and samples were collected from the fruit set period to the white mature stage across five time points for shape analysis and transcriptome studies. By combining EFDs with WGCNA and STEM, the study aimed to identify the critical periods and key genes involved in the formation of jujube fruit shape. The findings indicated that the D25 (25 days after flowering) is crucial for the development of jujube fruit shape. Moreover, ZjAGL80, ZjABI3, and eight other genes have been implicated to regulate the shape development of jujubes at different periods of fruit development, through seed development and fruit development pathway. In this research, EFDs were employed to precisely delineate the shape of jujube fruits. This approach, in conjunction with transcriptome, enhanced the precision of gene identification, and offered an innovative methodology for fruit shape analysis. This integration facilitates the advancement of research into the morphological characteristics of plant fruits, underpinning the development of a refined framework for the genetic underpinnings of fruit shape variation. [ABSTRACT FROM AUTHOR]

Pepper (Capsicum spp.) has a long domestication history and has accumulated diverse fruit shape variations. The illustration of the mechanisms underlying different fruit shape is not only important for clarifying the regulation of pepper fruit development but also critical for fully understanding the plant organ morphogenesis. Thus, in this study, morphological, histological and transcriptional investigations have been performed on pepper accessions bearing fruits with five types of shapes. From the results it can be presumed that pepper fruit shape was determined during the developmental processes before and after anthesis, and the anthesis was a critical developmental stage for fruit shape determination. Ovary shape index variations of the studied accessions were mainly due to cell number alterations, while, fruit shape index variations were mainly attributed to the cell division and cell expansion variations. As to the ovary wall thickness and pericarp thickness, they were regulated by both cell division in the abaxial-adaxial direction and cell expansion in the proximal-distal and medio-lateral directions. Transcriptional analysis discovered that the OFP-TRM and IQD-CaM pathways may be involved in the regulation of the slender fruit shape and the largest ovary wall cell number in the blocky-shaped accession can be attributed to the higher expression of CYP735A1, which may lead to an increased cytokinin level. Genes related to development, cell proliferation/division, cytoskeleton, and cell wall may also contribute to the regulation of helical growth in pepper. The insights gained from this study are valuable for further investigations into pepper fruit shape development.

Introduction Cucumis sativus L. (2n=2x=14) originates from the south of the Himalayan mountains and has at least 3000 years of history of cultivation in India. According to the latest statistics published by the Ministry of Agriculture, about 75% of greenhouse production belongs to greenhouse cucumbers. This plant, with a cultivated area of 7539 ha-1 and a production amounting to 1923865 t year-1, is considered one of the most important vegetable and summer greenhouse products in the country. Cucumber varieties should have characteristics such as high yield, quality of taste, shelf life and resistance to diseases. Based on this, modified cultivars and imported cultivars must pass compatibility tests in order to be able to enter commercial fields. Recent research in Japan shows that by creating suitable conditions for various factors in the greenhouse (light distribution, temperature, humidity, carbon dioxide, irrigation, nutrition and pruning), the yield of greenhouse cucumbers can be up to 40 kg m-2 year-1 year. The difference between different varieties of cucumber is primarily due to characteristics such as the number of fruits per plant, fruit size (fruit length and length-to-diameter ratio) and fruit surface characteristics (the presence of grooves, surface smoothness, and fruit color). The number of cucumbers per plant is one of the most important yield components. The study of 9 varieties of cucumbers in greenhouse conditions showed that the range of changes in the number of cucumbers per plant varied from 19 to 54.3, and Khasib variety had the highest yield with the production of 14.9 kg of fresh weight per square meter. Material and Methods In order to compare the yield, yield components and some morpho-physiological characteristics of greenhouse cucumber hybrids produced in the country, a research was conducted in 2022 under greenhouse conditions in Varamin city. In this research, 11 greenhouse cucumber hybrids along with 4 regional control cultivars were evaluated in a completely randomized block design with three replications. The initial tillage including plowing, disc and soil disinfection was done through sunning the soil. The width of the seed planting bed was considered to be 70 cm in order to provide the possibility of two-row cultivation. The width of the corridors was considered to be 80 cm in order to provide proper ventilation and access of workers to the bushes for operations and harvest during the period. The drip irrigation system was chosen so that one tape strip could be used for each row of crops. The plant needed fertilizer during the growth period and was determined based on the soil test and provided to the plant through the irrigation system. Fruit yield for different harvests (once every 10 harvests) and total fresh fruit yield based on the total area of the plot (after removing the margins) and traits such as plant height (meters), internode length (cm), leaf length (cm), Leaf width (cm), petiole length (cm), fruit length (cm), fruit diameter (mm), number of fruits per plant and fruit weight per plant (grams) based on the selection of 10 plants per plot was taken. The fruit shape index was obtained from the ratio of the length to the diameter of the fruit. For the experimental hybrids, after harvest fruit color was determined by grouping (light green to green), (green), (green to dark green) and dark green. Results and Discussion Based on the obtained results, the hybrid (IR4) with a total fresh fruit yield of 11.49 kg m-2 had a significantly higher performance than other hybrids, but there is not a significant difference between this hybrid and the hybrid (IR5) with a fruit weight of 10.61 kg m-2. 10 harvested stages for two hybrids (IR4) and (IR5) constituted 24.6 and 22.9% of the total yield, respectively. The hybrids (IR11) and (IR6) had the longest and shortest fruit length with 16.60 cm and 11.12 cm, respectively. The fruit shape index (the ratio of fruit length to diameter) in hybrid (IR11) had the highest value (6.35). The hybrids (IR4) and (IR5) that produced the highest yields per hectare had the highest number of fruits plant-1 with 108.72 and 84.22 cucumbers plant-1, respectively. The presence of this number of fruits is one of the important factors for producing high yields in these two hybrids, and the number of fruits in the rest of the hybrids is often in the range of 50 to 70 cucumbers per plant. Although in some studies the number of 135 fruits plant-1 is also mentioned for greenhouse cucumbers, but in most cases this number is less than 50. The color of the fruit is also an important quality attribute that is very important in the cucumber market. This trait varies from light green to dark green. Hybrid (IR9) dark green, hybrids (IR2), (IR6), (IR13) (IR15) dark green to green, hybrids (IR1), (IR3), (IR4), (IR5), (IR12) and (IR14) was green and hybrids (IR7), (IR8), (IR10) and (IR11) had light green to green color. The superior performance of two experimental hybrids and the equal performance of 7 other experimental hybrids (out of 11 studied hybrids) compared to the control hybrids can be a good promise for the production of greenhouse cucumber hybrid varieties by domestic companies.

The shape of fruits is a critical trait affecting the commercial value and consumer acceptance of horticultural crops. Genetic regulation of fruit shape involves complex interactions among multiple genes and environmental factors. This review summarizes recent advances in understanding the genetic mechanisms controlling fruit shape in several key horticultural crops, including tomato, pepper, cucumber, peach, and grape. We present the identification and characterization of genes and quantitative trait loci (QTLs) that influence fruit shape, focusing on the roles of genes such as OVATE, SUN, FAS, LC, ENO, GLOBE, CsSUN, CsFUL1, CsCRC, PpCAD1, PpOFP1, and VvSUN. This review highlights the importance of hormonal pathways, particularly those involving synthesis and concentration of cytokinins and brassinosteroids in shaping fruit morphology, and explores how these genes interact and form regulatory networks that collectively determine the final fruit shape. This knowledge provides a foundation for developing strategies to improve fruit quality and yield through genetic modification and breeding programs.

Peppers are a major vegetable crop worldwide. With the completion of additional genome assemblies, a multitude of single-nucleotide polymorphisms (SNPs) can be utilized for population structure and genetic diversity analysis. In this study, we used target SNP-sequencing as a new high-throughput sequencing technology, screening out 425 perfect SNPs for analyzing the genetic diversity and population structure among 496 pepper lines from five pepper species in China and abroad. The perfect SNP panel exhibited commendable discriminative ability, as indicated by the average values of polymorphism information content, observed heterozygosity, minor allele frequency, and genetic diversity, which were 0.346, 0.011, 0.371, and 0.449, respectively. Based on phylogenetic, population structure, and principal component analyses, 484 C. annuum lines were divided into four subpopulations according to the shape of fruit: blocky fruit, wide-horn fruit, narrow-horn fruit, and linear fruit. These subpopulations displayed clear clustering with minimal or no overlap. Moreover, F statistic (Fst) analysis revealed considerable distinctions among these subpopulations. Additionally, we established a set of 47 core SNPs that could effectively differentiate among all pepper lines. This core SNP set could precisely classify the C. annuum lines into four distinct fruit-shape groups. The blocky and narrow-horn fruit subpopulations displayed the lowest and highest genetic diversity, respectively. This study highlights the importance of fruit shape as a crucial trait in pepper breeding. Moreover, this work indicates the immense potential of optimized target SNP technology in the addition of foreground markers of important traits to improve molecular breeding efficiency, and demonstrates its broad application prospects in the genetic analysis and variety identification of peppers. [ABSTRACT FROM AUTHOR]

In apple (Malus domestica), the level and timing of crop load have a major impact on the final fruit size and can also play a role in optimising internal fruit quality. Ideal crop loads vary with cultivar, but very few cultivars have recommended crop load targets that consider the effect of crop load on both return bloom and fruit quality. To address this issue, studies examining a range of crop loads and thinning times were undertaken on several apple cultivars. Return bloom and multiple fruit quality parameters were examined. The results of these studies demonstrate positive effects for early thinning, not only on fruit size but also on firmness and soluble solids content. Early-thinned fruit showed higher sugar levels than late-thinned fruit. Previously undemonstrated positive relationships between fruit sugar content and weight and between fruit firmness and weight in both ‘Fuji’ and ‘Delicious’, as well as between fruit sugar content and fruit firmness in ‘Delicious’, indicate that early thinning is a valuable tool in improving fruit quality. The current target crop load recommendations of 4–6 fruit cm−2 trunk cross-sectional area (TCSA) for ‘Fuji’ and 2–4 fruit cm−2 TCSA for ‘Delicious’ are confirmed by this study. New recommendations are proposed for the other cultivars in this study taking into account the impact of crop load on both fruit quality and return bloom. Both ‘Pink Lady’ and ‘Gala’ can support crop loads of up to eight fruit cm−2 TCSA without impacting return bloom, but fruit quality is compromised; hence, lower targets in the range of 4–6 fruit cm−2 TCSA are recommended. Large fruit size and good return bloom can be maintained in ‘Jonagold’ at crop loads of eight fruit cm−2 TCSA, while crop loads of four fruit cm−2 TCSA are suggested for ‘Braeburn’ to sustain regular bearing and good fruit size.

Cucumber (Cucumis sativus L.) is a vital economic vegetable crop, and the TONNEAU1 Recruiting Motif (TRM) gene plays a key role in cucumber organ growth. However, the pan-genomic characteristics of the TRM gene family and their expression patterns under different stresses have not been reported in cucumber. In this study, we identified 29 CsTRMs from the pan-genomes of 13 cucumber accessions, with CsTRM29 existing only in PI183967. Most CsTRM proteins exhibited differences in sequence length, except five CsTRMs having consistent protein sequence lengths among the 13 accessions. All CsTRM proteins showed amino acid variations. An analysis of CsTRM gene expression patterns revealed that six CsTRM genes strongly changed in short-fruited lines compared with long-fruited lines. And four CsTRM genes strongly responded to salt and heat stress, while CsTRM14 showed responses to salt stress, powdery mildew, gray mold, and downy mildew. Some CsTRM genes were induced or suppressed at different treatment timepoints, suggesting that cucumber TRM genes may play different roles in responses to different stresses, with expression patterns varying with stress changes. Remarkably, the expression of CsTRM21 showed considerable change between long and short fruits and in responses to abiotic stresses (salt stress and heat stress), as well as biotic stresses (powdery mildew and gray mold), suggesting a dual role of CsTRM21 in both fruit shape determination and stress resistance. Collectively, this study provided a base for the further functional identification of CsTRM genes in cucumber plant growth and stress resistance.

One of the main reasons for the low yield of Camellia oleifera Abel is the large number of flowers and fruits that fall off before ripening. The aim of this study was to investigate the effect of foliar spraying of potassium dihydrogen phosphate (KH2PO4) on the fruiting characteristics of C. oleifera, and to provide technical support for its flower and fruit preservation and yield increasing. Three C. oleifera cultivars, ‘Changlin 18’, ‘Changlin 166’, and ‘Changlin 40’, were used as experimental materials to conduct foliar spraying experiments with different water concentrations of KH2PO4. The effects of KH2PO4 on the fruit retention rate, fruit properties, and seed oil quality of each cultivar were measured and analyzed. The application of the optimal concentration of KH2PO4 significantly enhanced various fruit quality metrics of three C. oleifera cultivars. Specifically, the total fruit retention rate was increased by 30.02~87.53%, the transverse diameter by 7.36~21.21%, and the longitudinal diameter by 18.56%, and the fruit weight of ‘Changlin 40’ could increase by 83.63%. It also increased dry seed yield by 27.87~80.81%, dry kernel rate by 10.29~30.12%, dry seed oil content by 28.00~29.77%, total unsaturated fatty acids (TUFAs) by 0.63~5.3%, monounsaturated fatty acids (MUFAs) by 0.30~5.37%, and squalene by 0.09~0.14% during the maturing stage. However, camellia cultivars had the different responses to KH2PO4 concentrations. To promote the fruiting of C. oleifera, improve the economic traits of fruits, and enhance the quality of tea oil, the recommended concentrations of KH2PO4 solution are 4.50 g·L−1, 1.50 g·L−1, and 1.50 g·L−1, for mist spraying on the trees of ‘Changlin 18’, ‘Changlin 166’, and ‘Changlin 40’, respectively. For mixed cultivars of C. oleifera which planted randomly, the recommended concentration range of KH2PO4 solution for spraying is 1.50 to 4.50 g·L−1.

SUMMARY: Woodland strawberry (Fragaria vesca subsp. vesca) is a wild relative of cultivated strawberry (F. × ananassa) producing small and typically conical fruits with an intense flavor and aroma. The wild strawberry species, F. vesca, is a rich resource of genetic and metabolic variability, but its diversity remains largely unexplored and unexploited. In this study, we aim for an in‐depth characterization of the fruit complex volatilome by GC–MS as well as the fruit size and shape using a European germplasm collection that represents the continental diversity of the species. We report characteristic volatilome footprints and fruit phenotypes of specific geographical areas. Thus, this study uncovers phenotypic variation linked to geographical distribution that will be valuable for further genetic studies to identify candidate genes or develop markers linked to volatile compounds or fruit shape and size traits. [ABSTRACT FROM AUTHOR]

In apple (Malus domestica), the level and timing of crop load have a major impact on the final fruit size and can also play a role in optimising internal fruit quality. Ideal crop loads vary with cultivar, but very few cultivars have recommended crop load targets that consider the effect of crop load on both return bloom and fruit quality. To address this issue, studies examining a range of crop loads and thinning times were undertaken on several apple cultivars. Return bloom and multiple fruit quality parameters were examined. The results of these studies demonstrate positive effects for early thinning, not only on fruit size but also on firmness and soluble solids content. Early-thinned fruit showed higher sugar levels than late-thinned fruit. Previously undemonstrated positive relationships between fruit sugar content and weight and between fruit firmness and weight in both 'Fuji' and 'Delicious', as well as between fruit sugar content and fruit firmness in 'Delicious', indicate that early thinning is a valuable tool in improving fruit quality. The current target crop load recommendations of 4–6 fruit cm−2 trunk cross-sectional area (TCSA) for 'Fuji' and 2–4 fruit cm−2 TCSA for 'Delicious' are confirmed by this study. New recommendations are proposed for the other cultivars in this study taking into account the impact of crop load on both fruit quality and return bloom. Both 'Pink Lady' and 'Gala' can support crop loads of up to eight fruit cm−2 TCSA without impacting return bloom, but fruit quality is compromised; hence, lower targets in the range of 4–6 fruit cm−2 TCSA are recommended. Large fruit size and good return bloom can be maintained in 'Jonagold' at crop loads of eight fruit cm−2 TCSA, while crop loads of four fruit cm−2 TCSA are suggested for 'Braeburn' to sustain regular bearing and good fruit size. [ABSTRACT FROM AUTHOR]

In a prepurchase situation, consumers base their choice decision on external fruit characteristics, from which they infer internal characteristics. This study investigates consumer preference for pomegranate appearance using a choice-based conjoint analysis with 320 participants. We created 27 images of pomegranates that differed in varietal characteristics: colour (yellow, bicoloured, and red), shape (round, oval, and flattened), and calyx shape (open, semi-open, and closed). Colour was by far the most important factor for consumers, followed by fruit shape and calyx shape. Two preference profiles were identified. Most consumers liked bicolour and red pomegranates equally, and rejected yellow ones, while a smaller group concentrated their choice on bicolour pomegranates. In terms of fruit and calyx shape, oval and flattened fruit and open calyx were the most preferred by both consumer groups. Barriers and drivers for consumption were also investigated. There is still plenty of room to increase pomegranate consumption. Greater availability of pomegranates and ready-to-eat arils in grocery shops, obtaining new unseeded/easier-to-peel varieties, and providing a sensory label would help to overcome current barriers. Marketing campaigns should focus on a pomegranate's health benefits and its versatility in consumption. [ABSTRACT FROM AUTHOR]

Shape is a primary determinant of consumer preference for many horticultural crops and it is also associated with many aspects of marketing, harvest mechanics, and postharvest handling. Perceptions of quality and preference often map to specific shapes of fruits, tubers, leaves, flowers, roots, and other plant organs. As a result, humans have greatly expanded the palette of shapes available for horticultural crops, in many cases creating a series of market classes where particular shapes predominate. Crop wild relatives possess organs shaped by natural selection, while domesticated species possess organs shaped by human desires. Selection for visually-pleasing shapes in vegetable crops resulted from a number of opportunistic factors, including modification of supernumerary cambia, allelic variation at loci that control fundamental processes such as cell division, cell elongation, transposon-mediated variation, and partitioning of photosynthate. Genes that control cell division patterning may be universal shape regulators in horticultural crops, influencing the form of fruits, tubers, and grains in disparate species. Crop wild relatives are often considered less relevant for modern breeding efforts when it comes to characteristics such as shape, however this view may be unnecessarily limiting. Useful allelic variation in wild species may not have been examined or exploited with respect to shape modifications, and newly emergent information on key genes and proteins may provide additional opportunities to regulate the form and contour of vegetable crops. [ABSTRACT FROM AUTHOR]

Frequent polyploidization events in plants have led to the establishment of many lineage-specific traits representing each species. Little is known about the genetic bases for these specific traits in polyploids, presumably due to plant genomic complexity and their difficulties in applying genetic approaches. Hexaploid Oriental persimmon (Diospyros kaki) has evolved specific fruit characteristics, including wide variations in fruit shapes and astringency. In this study, using whole-genome diploidized/quantitative genotypes from ddRAD-Seq data of 173 persimmon cultivars, we examined their population structures and potential correlations between their structural transitions and variations in nine fruit traits. The population structures of persimmon cultivars were highly randomized and not substantially correlated with the representative fruit traits focused on in this study, except for fruit astringency. With genome-wide association analytic tools considering polyploid alleles, we identified the loci associated with the nine fruit traits; we mainly focused on fruit-shape variations, which have been numerically characterized by principal component analysis of elliptic Fourier descriptors. The genomic regions that putatively underwent selective sweep exhibited no overlap with the loci associated with these persimmon-specific fruit traits. These insights will contribute to understanding the genetic mechanisms by which fruit traits are independently established, possibly due to polyploidization events. [ABSTRACT FROM AUTHOR]

Jujube (Ziziphus jujuba) exhibits a rich diversity in fruit shape, with natural occurrences of gourd-like, flattened, and other special shapes. Despite the ongoing research into fruit shape, studies integrating elliptical Fourier descriptors (EFDs) with both Short Time-series Expression Miner (STEM) and weighted gene co-expression network analysis (WGCNA) for gene discovery remain scarce. In this study, six cultivars of jujube fruits with distinct shapes were selected, and samples were collected from the fruit set period to the white mature stage across five time points for shape analysis and transcriptome studies. By combining EFDs with WGCNA and STEM, the study aimed to identify the critical periods and key genes involved in the formation of jujube fruit shape. The findings indicated that the D25 (25 days after flowering) is crucial for the development of jujube fruit shape. Moreover, ZjAGL80, ZjABI3, and eight other genes have been implicated to regulate the shape development of jujubes at different periods of fruit development, through seed development and fruit development pathway. In this research, EFDs were employed to precisely delineate the shape of jujube fruits. This approach, in conjunction with transcriptome, enhanced the precision of gene identification, and offered an innovative methodology for fruit shape analysis. This integration facilitates the advancement of research into the morphological characteristics of plant fruits, underpinning the development of a refined framework for the genetic underpinnings of fruit shape variation.

Shape is a critical element of the visual appeal of strawberry fruit and is influenced by both genetic and non-genetic determinants. Current fruit phenotyping approaches for external characteristics in strawberry often rely on the human eye to make categorical assessments. However, fruit shape is an inherently multi-dimensional, continuously variable trait and not adequately described by a single categorical or quantitative feature. Morphometric approaches enable the study of complex, multi-dimensional forms but are often abstract and difficult to interpret. In this study, we developed a mathematical approach for transforming fruit shape classifications from digital images onto an ordinal scale called the Principal Progression of k Clusters (PPKC). We use these human-recognizable shape categories to select quantitative features extracted from multiple morphometric analyses that are best fit for genetic dissection and analysis. We transformed images of strawberry fruit into human-recognizable categories using unsupervised machine learning, discovered 4 principal shape categories, and inferred progression using PPKC. We extracted 68 quantitative features from digital images of strawberries using a suite of morphometric analyses and multivariate statistical approaches. These analyses defined informative feature sets that effectively captured quantitative differences between shape classes. Classification accuracy ranged from 68% to 99% for the newly created phenotypic variables for describing a shape. Our results demonstrated that strawberry fruit shapes could be robustly quantified, accurately classified, and empirically ordered using image analyses, machine learning, and PPKC. We generated a dictionary of quantitative traits for studying and predicting shape classes and identifying genetic factors underlying phenotypic variability for fruit shape in strawberry. The methods and approaches that we applied in strawberry should apply to other fruits, vegetables, and specialty crops.

Summary: The mechanisms that regulate the vast diversity of plant organ shapes such as the fruit remain to be fully elucidated. TONNEAU1 Recruiting Motif proteins (TRMs) have been implicated in the control of organ shapes in a number of plant species, including tomato. However, the role of many of them is unknown. TRMs interact with Ovate Family Proteins (OFPs) via the M8 domain. However, the in planta function of the TRM‐OFP interaction in regulating shape is unknown.We used CRISPR/Cas9 to generate knockout mutants in TRM proteins from different subclades and in‐frame mutants within the M8 domain to investigate their roles in organ shape and interactions with OFPs.Our findings indicate that TRMs impact organ shape along both the mediolateral and proximo‐distal axes of growth. Mutations in Sltrm3/4 and Sltrm5 act additively to rescue the elongated fruit phenotype of ovate/Slofp20 (o/s) to a round shape. Contrary, mutations in Sltrm19 and Sltrm17/20a result in fruit elongation and further enhance the obovoid phenotype in the o/s mutant.This study supports a combinatorial role of the TRM‐OFP regulon where OFPs and TRMs expressed throughout development have both redundant and opposing roles in regulating organ shape. [ABSTRACT FROM AUTHOR]

Shape is a primary determinant of consumer preference for many horticultural crops and it is also associated with many aspects of marketing, harvest mechanics, and postharvest handling. Perceptions of quality and preference often map to specific shapes of fruits, tubers, leaves, flowers, roots, and other plant organs. As a result, humans have greatly expanded the palette of shapes available for horticultural crops, in many cases creating a series of market classes where particular shapes predominate. Crop wild relatives possess organs shaped by natural selection, while domesticated species possess organs shaped by human desires. Selection for visually-pleasing shapes in vegetable crops resulted from a number of opportunistic factors, including modification of supernumerary cambia, allelic variation at loci that control fundamental processes such as cell division, cell elongation, transposon-mediated variation, and partitioning of photosynthate. Genes that control cell division patterning may be universal shape regulators in horticultural crops, influencing the form of fruits, tubers, and grains in disparate species. Crop wild relatives are often considered less relevant for modern breeding efforts when it comes to characteristics such as shape, however this view may be unnecessarily limiting. Useful allelic variation in wild species may not have been examined or exploited with respect to shape modifications, and newly emergent information on key genes and proteins may provide additional opportunities to regulate the form and contour of vegetable crops.

The areca palm (Areca catechu L.) is one of the most economically important palm trees in tropical areas. To inform areca breeding programs, it is critical to characterize the genetic bases of the mechanisms that regulate areca fruit shape and to identify candidate genes related to fruit-shape traits. However, few previous studies have mined candidate genes associated with areca fruit shape. Here, the fruits produced by 137 areca germplasms were divided into three categories (spherical, oval, and columnar) based on the fruit shape index. A total of 45,094 high-quality single-nucleotide polymorphisms (SNPs) were identified across the 137 areca cultivars. Phylogenetic analysis clustered the areca cultivars into four subgroups. A genome-wide association study that used a mixed linear model identified the 200 loci that were the most significantly associated with fruit-shape traits in the germplasms. In addition, 86 candidate genes associated with areca fruit-shape traits were further mined. Among the proteins encoded by these candidate genes were UDP-glucosyltransferase 85A2, the ABA-responsive element binding factor GBF4, E3 ubiquitin-protein ligase SIAH1, and LRR receptor-like serine/threonine-protein kinase ERECTA. Quantitative real-time polymerase chain reaction (qRT-PCR) analysis showed that the gene that encoded UDP-glycosyltransferase, UGT85A2, was significantly upregulated in columnar fruits as compared to spherical and oval fruits. The identification of molecular markers that are closely related to fruit-shape traits not only provides genetic data for areca breeding, but it also provides new insights into the shape formation mechanisms of drupes. [ABSTRACT FROM AUTHOR]

Orange (Citrus x aurantium var sinensis) is the most widely consumed citrus fruit, and its essential oil, which is made from the peel, is the most widely used in the food, perfume, and cosmetics industries. This citrus fruit is an interspecific hybrid that would have appeared long before our era and would result from two natural crosses between mandarin and pummelo hybrids. This single initial genotype was multiplied by apomictic reproduction and diversified by mutations to produce hundreds of cultivars selected by men essentially based on phenotypic characteristics of appearance, spread of maturity, and taste. Our study aimed to assess the diversity of essential oil composition and variability in the aroma profile of 43 orange cultivars representing all morphotypes. In agreement with the mutation-based evolution of orange trees, the genetic variability tested with 10 SSR genetic markers was null. The oils from peels and leaves extracted by hydrodistillation were analyzed for composition by GC (FID) and GC/MS and for aroma profile by the CATA (Check All That Apply) method by panelists. Oil yield varied between varieties by a factor of 3 for PEO and a factor of 14 for LEO between maximum and minimum. The composition of the oils was very similar between cultivars and was mainly dominated by limonene (>90%). However, small variations were observed as well as in the aromatic profile, with some varieties clearly distinguishing themselves from the others. This low chemical diversity contrasts with the pomological diversity, suggesting that aromatic variability has never been a selection criterion in orange trees. [ABSTRACT FROM AUTHOR]

The OVATE gene family is a class of conserved transcription factors that play significant roles in plant growth, development, and abiotic stress, and also affect fruit shape in vegetable crops. Bottle gourd (Lagenaria siceraria), commonly known as calabash or gourd, is an annual climber belonging to the Cucurbitaceae family. Studies on bottle gourd OVATE genes are limited. In this study, we performed genome-wide identification of the OVATE gene family in bottle gourd, and identified a total of 20 OVATE family genes. The identified genes were unevenly distributed across 11 bottle gourd chromosomes. We also analyzed the gene homology, amino acid sequence conservation, and three-dimensional protein structure (via prediction) of the 20 OVATE family genes. We used RNA-seq data to perform expression analysis, which found 20 OVATE family genes to be differentially expressed based on spatial and temporal characteristics, suggesting that they have varying functions in the growth and development of bottle gourd. In situ hybridization and subcellular localization analysis showed that the expression characteristics of the LsOVATE1 gene, located on chromosome 7 homologous to OVATE, is a candidate gene for affecting the fruit shape of bottle gourd. In addition, RT-qPCR data from bottle gourd roots, stems, leaves, and flowers showed different spatial expression of the LsOVATE1 gene. The ectopic expression of LsOVATE1 in tomato generated a phenotype with a distinct fruit shape and development. Transgenic-positive plants that overexpressed LsOVATE1 had cone-shaped fruit, calyx hypertrophy, petal degeneration, and petal retention after flowering. Our results indicate that LsOVATE1 could serve important roles in bottle gourd development and fruit shape determination, and provide a basis for future research into the function of LsOVATE1. [ABSTRACT FROM AUTHOR]

Participatory on-farm evaluation of improved tomato varieties ('Melka salsa', 'Roma VF' and 'Kochero') against the local tomato variety was carried out during the 2019/2020 growing season involving six farmers of Abergelle district, Eastern Amhara. The objective of the experiment was to assess the performance of different tomato varieties for the farmers, then to collect their feedback. Based on the actual and farmers' preference data, the analysis underscores the better performance of improved tomato varieties over local varieties by most yield-related attributes. Average marketable fruit yields of 'Melka salsa', 'Roma VF', 'Kochero', and the local variety were 4.62, 3.88, 3.64, and 3.10 ton ha-1, respectively. The improved varieties thus had a yield advantage of 72.38%, 37.14%, and 25.72% over the local variety in that order. Among improved tomato varieties, 'Melka salsa' provided the highest fruit yield on top of owing the highest score of overall preference attributes rank. Scale-wide diffusion of 'Melka salsa' tomato variety is therefore suggested for similar and potential agro-ecologies. Biological scientists also should take farmers' preference attributes and feedback as a backup for future breeding and adaptation studies on tomato varieties. [ABSTRACT FROM AUTHOR]

Cucumber (Cucumis sativus L.) fruits, which are eaten at an immature stage of development, can vary extensively in morphological features such as size, shape, waxiness, spines, warts, and flesh thickness. Different types of cucumbers that vary in these morphological traits are preferred throughout the world. Numerous studies in recent years have added greatly to our understanding of cucumber fruit development and have identified a variety of genetic factors leading to extensive diversity. Candidate genes influencing floral organ establishment, cell division and cell cycle regulation, hormone biosynthesis and response, sugar transport, trichome development, and cutin, wax, and pigment biosynthesis have all been identified as factors influencing cucumber fruit morphology. The identified genes demonstrate complex interplay between structural genes, transcription factors, and hormone signaling. Identification of genetic factors controlling these traits will facilitate breeding for desired characteristics to increase productivity, improve shipping, handling, and storage traits, and enhance consumer-desired qualities. The following review examines our current understanding of developmental and genetic factors driving diversity of cucumber fruit morphology. [ABSTRACT FROM AUTHOR]

The aim of this study was to investigate the effect of phenotypic diversity of argan fruit with different morphological characteristics (fusiform, oval, apiculate and spherical) on fat and protein content, inflexibility and fat chemical composition, oil acids and sterols. To investigate the links of argan fruit shape with the chemical composition of argan oil, with the help of native communities, 4 different fruit shapes (fusiform, apiculate, spherical and oval) were selected, which were harvested from the same place (Tamanar) in Essaouira province (South Plain region, Western Morocco). After harvesting the fruit of the argan tree, 100 samples were taken from each form. They were crushed to destroy the core. After extraction of hexane with Soxhlet, fat content, protein level, unsaponifiable content, composition of fatty acids and sterols in fat were determined. The results showed that the oval shape is the best shape of argan fruit because their kernels contain more than 50% fat and a higher percentage of unsaponifiables. The results on fatty acids and sterols showed that argan oil contained 80% of unsaturated fatty acids. The results also showed that the main products of the sterol composition in argan oil were schottenol (or Δ-7-stigmasterol) (42.8 and 46.4%) and spinasterol (39.8 and 45.6%). The study of the chemical composition showed that there was no correlation between the shape of the fruit of the argan tree and the composition of fatty acids. Depending on the shape of the argan fruit, fatty acids and sterols were not only related to the shape but also to the nature of the soil and its altitude, longitude and distance from the sea.

In a prepurchase situation, consumers base their choice decision on external fruit characteristics, from which they infer internal characteristics. This study investigates consumer preference for pomegranate appearance using a choice-based conjoint analysis with 320 participants. We created 27 images of pomegranates that differed in varietal characteristics: colour (yellow, bicoloured, and red), shape (round, oval, and flattened), and calyx shape (open, semi-open, and closed). Colour was by far the most important factor for consumers, followed by fruit shape and calyx shape. Two preference profiles were identified. Most consumers liked bicolour and red pomegranates equally, and rejected yellow ones, while a smaller group concentrated their choice on bicolour pomegranates. In terms of fruit and calyx shape, oval and flattened fruit and open calyx were the most preferred by both consumer groups. Barriers and drivers for consumption were also investigated. There is still plenty of room to increase pomegranate consumption. Greater availability of pomegranates and ready-to-eat arils in grocery shops, obtaining new unseeded/easier-to-peel varieties, and providing a sensory label would help to overcome current barriers. Marketing campaigns should focus on a pomegranate’s health benefits and its versatility in consumption.

Fruit shape is an important trait that attracts consumers, and the regulation of genes related to cell division is crucial for shaping multicellular organs. In Arabidopsis, MYB3R transcription factors, which harbor three imperfect repeats in the N-terminus, control organ growth by regulating cell division. However, the function of MYB3Rs in tomato remains unknown. Here, we characterized tomato SlMYB3R3 , which was preferentially expressed in flowers and placed in a subclade with two Arabidopsis cell cycle suppressors (MYB3R3/5). slmyb3r3 knockout mutants were generated using the CRISPR/Cas9 system. Morphological observation of the slmyb3r3 mutants showed that fruits that were elongated and occasionally peanut-like in shape were formed, which was caused by significantly increased cell numbers in the longitudinal direction. Transcriptome and yeast one-hybrid assay results suggested that SlMYB3R3 acted as a suppressor of cell-cycle-related genes by binding to the mitosis-specific activator (MSA) motifs in their promoters. Taken together, knock out of the suppressor SlMYB3R3 leads to elongated fruit, which results from the altered cell division pattern at the ovary stage, by regulating cell-cycle-related genes in an MSA-dependent manner. Our results suggest that SlMYB3R3 and its orthologs have the potential to change fruit shape as part of the molecular breeding of fruit crops. [ABSTRACT FROM AUTHOR]

Fruit architecture and morphology-related traits are among the determinants of fruit diversity and are major contributors to yield and yield potential in chile pepper (Capsicum spp.). This study aimed to characterize 105 genotypes of a Capsicum diversity panel consisting of cultivars, breeding lines, landrace, and wild species belonging to twelve different pod (fruit) types, for 32 morphometric Tomato Analyzer (TA) descriptors. Hierarchical cluster analysis grouped the genotypes into eight clusters based on the TA descriptors. A multivariate principal component analysis yielded two principal components, PC1 and PC2, which explained 53.24% and 10.11% of the variation in fruit diversity, respectively. The basic measurements--namely, perimeter, area, width midheight, maximum width, height midwidth, maximum height, and curved height were the most discriminating descriptors with a maximum contribution to the overall fruit shape. There was a strong, positive correlation for basic measurements and fruit shape index, whereas blockiness was negatively correlated with distal angle macro. Additive genetic effects and high heritability for the fruit traits were observed. Results of this study will provide valuable information to breed high-yielding chile pepper cultivars based on fruit morphology traits. [ABSTRACT FROM AUTHOR]

Pepper (Capsicum spp.) is an important vegetable crop that provides a unique pungent sensation when eaten. Through construction of a pepper variome map, we examined the main groups that emerged during domestication and breeding of C. annuum , their relationships and temporal succession, and the molecular events underlying the main transitions. The results showed that the initial differentiation in fruit shape and pungency, increase in fruit weight, and transition from erect to pendent fruits, as well as the recent appearance of large, blocky, sweet fruits (bell peppers), were accompanied by strong selection/fixation of key alleles and introgressions in two large genomic regions. Furthermore, we identified Up , which encodes a BIG GRAIN protein involved in auxin transport, as a key domestication gene that controls erect vs pendent fruit orientation. The up mutation gained increased expression especially in the fruit pedicel through a 579-bp sequence deletion in its 5′ upstream region, resulting in the phenotype of pendent fruit. The function of Up was confirmed by virus-induced gene silencing. Taken together, these findings constitute a cornerstone for understanding the domestication and differentiation of a key horticultural crop. In this study, the authors identified the selection footprints, key genes, and their temporal sequence that give rise to present-day variations in pepper fruit shape and pungency. It was found that two wild-fragment introgressions and strong selection on Pun1 marked the emergence of blocky fruit pepper. A key domestication gene (Up) controlling pepper fruit orientation was also identified. [ABSTRACT FROM AUTHOR]

Cucumber (Cucumis sativus L.) fruit size/shape (FS) is an important yield and quality trait that is quantitatively inherited. Many quantitative trait loci (QTLs) for fruit size/shape have been identified, but very few have been fine-mapped or cloned. In this study, through marker-assisted foreground and background selections, we developed near-isogenic lines (NILs) for a major-effect fruit size/shape QTL FS5.2 in cucumber. Morphological and microscopic characterization of NILs suggests that the allele of fs5.2 from the semi-wild Xishuangbanna (XIS) cucumber (C. s. var. xishuangbannesis) reduces fruit elongation but promotes radial growth resulting in shorter but wider fruit, which seems to be due to reduced cell length, but increased cellular layers. Consistent with this, the NIL carrying the homozygous XIS allele (fs5.2) had lower auxin/IAA contents in both the ovary and the developing fruit. Fine genetic mapping with NIL-derived segregating populations placed FS5.2 into a 95.5 kb region with 15 predicted genes, and a homolog of the Arabidopsis CRABS CLAW (CsCRC) appeared to be the most possible candidate for FS5.2. Transcriptome profiling of NIL fruits at anthesis identified differentially expressed genes enriched in the auxin biosynthesis and signaling pathways, as well as genes involved in cell cycle, division, and cell wall processes. We conclude that the major-effect QTL FS5.2 controls cucumber fruit size/shape through regulating auxin-mediated cell division and expansion for the lateral and longitudinal fruit growth, respectively. The gibberellic acid (GA) signaling pathway also plays a role in FS5.2-mediated fruit elongation. [ABSTRACT FROM AUTHOR]

This study aimed to evaluate the physical and chemical properties of pumpkin (Cucurbita moschata Duchesne) seed oil obtained from local Sudanese pumpkins. Three different genotypes of the pumpkin fruits as round, elongated and bell shapes were collected from Elgadarif State, Sudan. The oil’s seeds’ physical and chemical characteristics were determined by viscosity, specific gravity, refractive index, oil content peroxide value, acid value, saponification, unsaponifiable, pH, iodine value, total polyphenols and fatty acid content. The results revealed that there were significant (p < 0.05) differences in the oil content and chemical characteristics (except acid value and pH) of oil among the different pumpkin fruit genotypes. Linoleic and oleic acids were the primary fatty acids among the different pumpkin fruit genotypes. However, there were no significant (p < 0.05) differences in the fatty acid content and physical properties of the seed’s oil. The high oil content, phenolic content and essential fatty acids indicated that the obtained oil from different local Sudanese pumpkins might impart health and nutritional benefit when involved in the food industry as a natural resource. [ABSTRACT FROM AUTHOR]

Fruit architecture and morphology-related traits are among the determinants of fruit diversity and are major contributors to yield and yield potential in chile pepper (Capsicum spp.). This study aimed to characterize 105 genotypes of a Capsicum diversity panel consisting of cultivars, breeding lines, landrace, and wild species belonging to twelve different pod (fruit) types, for 32 morphometric Tomato Analyzer (TA) descriptors. Hierarchical cluster analysis grouped the genotypes into eight clusters based on the TA descriptors. A multivariate principal component analysis yielded two principal components, PC1 and PC2, which explained 53.24% and 10.11% of the variation in fruit diversity, respectively. The basic measurements—namely, perimeter, area, width midheight, maximum width, height midwidth, maximum height, and curved height were the most discriminating descriptors with a maximum contribution to the overall fruit shape. There was a strong, positive correlation for basic measurements and fruit shape index, whereas blockiness was negatively correlated with distal angle macro. Additive genetic effects and high heritability for the fruit traits were observed. Results of this study will provide valuable information to breed high-yielding chile pepper cultivars based on fruit morphology traits.

The plant-specific IQ67 domain (IQD) is the largest class of calmodulin targets found in plants, and plays an important role in many biological processes, especially fruit development processes. However, the functional role of IQD proteins in the development of watermelon (Citrullus lanatus) shape remains unknown, as the IQD protein family in watermelon has not been systematically characterized. Herein, we elucidated the gene structures, chromosomal locations, evolutionary divergence, and functions of 35 IQD genes in the watermelon genome. The transcript profiles and quantitative real-time PCR analysis at different stages of fruit development showed that the ClIQD24 gene was highly expressed on 0 days after pollination. Furthermore, we found that the ectopic overexpression of ClIQD24 promoted tomato fruit elongation, thereby revealing the significance of ClIQD24 in the progression of watermelon shape. Our study will serve as a reference for further investigations on the molecular mechanisms underlying watermelon fruit shape formation. [ABSTRACT FROM AUTHOR]

Fruit shape, an important agronomic trait of cucumber (Cucumis sativus L.), is tightly controlled by a series of genes such as CsSUN, a homologue of SlSUN that is responsible for the tomato (Solanum lycopersicum) fruit shape via the modulation of cell division. However, the direct genetic evidence about the CsSUN-mediated regulation of fruit shape is still scarce, limiting our mechanistic understanding of the biological functions of CsSUN. Here, we introduced CsSUN into the round-fruited tomato inbred line 'SN1′ (wild type, WT) via the Agrobacterium tumefaciens-mediated method. The high and constitutive expression of CsSUN was revealed by real-time PCR in all the tested tissues of the transgenic plants, especially in the fruits and ovaries. Phenotypic analyses showed that the ectopic expression of CsSUN increased fruit length while it decreased fruit diameter, thus leading to the enhanced fruit shape index in the transgenic tomato lines relative to the WT. Additionally, the reduction in the seed size and seed-setting rate and the stimulation of seed germination were observed in the CsSUN-expressed tomato. A histological survey demonstrated that the elongated fruits were mainly derived from the significant increasing of the longitudinal cell number, which compensated for the negative effects of decreased cell area in the central columellae. These observations are different from action mode of SlSUN, thus shedding new insights into the SUN-mediated regulation of fruit shape. [ABSTRACT FROM AUTHOR]

The wax gourd is commonly grown in many countries because of its high nutritional and economic value. While the genes for the fruit shape and peel colour of wax gourd have been reported, the InDel markers linked to these genes remain undeveloped. In this study, the InDel markers linked to fruit-shape (Bch02G016830) and peel-colour (Bch05G003950) genes were developed from resequenced data. We used 120 inbred lines, 536 isolated populations, and 4 commercial hybrids to evaluate the validity and application value of the InDel markers. The accuracy rates of nine pairs of fruit-shape InDel markers (GX1-GX9) were 84.16–91.66% in 120 inbred lines. The accuracy rates of 27 pairs of peel-colour InDel markers (PS1-PS27) within approximately 3.0 Mb upstream and 3.0 Mb downstream of the peel-colour gene were 100% and those of 6 pairs of peel-colour InDel markers (PS28-PS33) within 3.0–20 Mb upstream and downstream of the peel-colour gene were 55.83–90% in 120 inbred lines. The purity of four commercial hybrids determined using GX1, GX2, PS13, and PS14 was highly consistent with the field results for purity determination. Our results provide important information for genetic linkage map construction, molecular-marker-assisted selective breeding, and purity determination of wax gourd hybrids. [ABSTRACT FROM AUTHOR]

Passiflora incarnata L., commonly known as maypop, is a wild passion fruit native to many areas of the eastern and southern United States where the climate ranges from subtropical to temperate. Although P. incarnata has had little attention paid to it for breeding purposes, it could be used in breeding for fruit production and possibly contribute cold hardiness genes in combination with other Passiflora species. The study was performed in 2018, 2019, and 2021 at the Mississippi State University South Mississippi Branch Experiment Station in Poplarville, MS, United States. Passiflora propagules were collected from various locations: Florida (FL), Illinois (IL), Mississippi (MS), Missouri (MO), and Oklahoma (OK). Of the 122 flowers across the five P. incarnata genotypes from differing locations, none of them produced a fruit or had any indication of successful or partially successful fertilization when selfed, indicating strong self- incompatibility. If self-compatibility does exist in nature, it is likely to be rare. However, certain combinations of P. incarnata from different locations produced successful fruiting, including IL x MO (52% success), FL x MO (85%), FL x OK (80%), MS x OK (40%), MO x IL (50%), MO x OK (40%), and OK x MO (80%). The differences across provenances show that incompatibility exists within P. incarnata but can depend on location. Overall, fruit weight, fruit size, and soluble solids content measured in this study were similar to and, in some cases, greater than those previously reported. These differences help to illustrate the diversity within P. incarnata and the still-untapped potential for breeding improvements. The problem of self-incompatibility is complex and there is much to learn about how Passiflora species, especially P. incarnata, function. Much of the U.S. domestic market is not familiar with passion fruit, especially as a table fresh product. This could be a barrier to adoption, but it could also prove to be an opportunity to create a niche within the present market and expand it. Although maypop fruit quality is not equal to that of Passiflora edulis Sims, selecting superior wild genotypes with desirable attributes to be used in future intra- and interspecific breeding is possible based on the results of this study. [ABSTRACT FROM AUTHOR]

Chili peppers are important as vegetables and ornamental crops, because of the variety of fruit shapes and colors. Understanding of flower and fruit development in Capsicum is limited compared with closely related Solanaceae crops such as tomato. This study reports a novel malformed fruit mutant named malformed fruit-1 (maf-1), which was isolated from an ethyl methanesulfonate–induced mutant population of chili pepper. maf-1 exhibited homeotic changes in the floral bud, which were characterized by conversion of petals and stamens into sepal-like and carpel-like organs, respectively. In addition, the indeterminate formation of carpel-like tissue was observed. Genetic analysis demonstrated that the causative gene in maf-1 is a nonsense mutation in CaLFY. This is the first characterization of an lfy mutant in Capsicum. Unlike tomatoes, the CaLFY mutation did not affect the architecture of sympodial unit or flowering time but mainly affected the formation of flower organs. Gene expression analysis suggested that a nonsense mutation in CaLFY led to decreased expression of multiple class B genes, resulting in homeotic changes in the flower and fruit. This maf-1 mutant may provide new insights at the molecular level in understanding flower organ formation and the genetic manipulation of fruit shape in chili peppers. [ABSTRACT FROM AUTHOR]

Relevance. The State Register of agricultural crops recommended for sowing on the territory of the Republic of Uzbekistan includes 47 hybrids and varieties of sweet pepper. Of these, 8 varieties and one F1 hybrid of domestic selection and 31 F1 hybrids of foreign selection (State Register, 2021). However, many of them, especially those of foreign selection, do not meet the requirements of the local market and are not adapted to local climatic conditions. In this regard, a preliminary test of varieties and hybrids included in the State Register, as well as F1 hybrids offered by foreign producers, was carried out in order to identify the most promising varieties for the conditions of the Central zone of Uzbekistan.Material and research methods. A preliminary tests included 20 varieties and F1 hybrids: 7 varieties and 1 hybrid F1 of domestic selection, 2 varieties and 10 F1 hybrids of foreign selection. The experiments were laid on the experimental base of the Research Institute of Plant Genetic Resources.Results. As a result of a comprehensive assessment of 20 varieties and hybrids of F1 sweet pepper, promising samples were identified for both breeding and industrial use. The sources of early maturity can be the Abai and Claudio hybrids, with the duration of the period "seedlings - biological ripeness of fruits" 97-99 days. To create large-fruited varieties in breeding work, F1 hybrids should be used: Procraft, Dallas, Magno, Claudio, Gemini and Zumrad variety. For breeding thick-walled and very thick-walled varieties and hybrids, the varieties Dar Tashkenta, Sabo, Nargiza, Lastochka, Podarok Moldova, Shodlik, Zumrad, etc., as well as F1 hybrids Procraft, Cadia should be used. High total (43.0-54.1 t/ha) and marketable (40.1-50.5 t/ha) yield was noted in hybrids F1. The most promising hybrids are Cadia, Procraft, Magno, Dallas with a total yield of 50.1-54.1 t/ha, against 47.5 t/ha for the F1 Zhaikhun standard. The total and marketable yield of the tested varieties was significantly lower compared to hybrids F1 and amounted to 33.5-38.6 and 30.7-35.7 t/ha, respectively.

Passiflora incarnata L., commonly known as maypop, is a wild passion fruit native to many areas of the eastern and southern United States where the climate ranges from subtropical to temperate. Although P. incarnata has had little attention paid to it for breeding purposes, it could be used in breeding for fruit production and possibly contribute cold hardiness genes in combination with other Passiflora species. The study was performed in 2018, 2019, and 2021 at the Mississippi State University South Mississippi Branch Experiment Station in Poplarville, MS, United States. Passiflora propagules were collected from various locations: Florida (FL), Illinois (IL), Mississippi (MS), Missouri (MO), and Oklahoma (OK). Of the 122 flowers across the five P. incarnata genotypes from differing locations, none of them produced a fruit or had any indication of successful or partially successful fertilization when selfed, indicating strong self- incompatibility. If self-compatibility does exist in nature, it is likely to be rare. However, certain combinations of P. incarnata from different locations produced successful fruiting, including IL × MO (52% success), FL × MO (85%), FL × OK (80%), MS × OK (40%), MO × IL (50%), MO × OK (40%), and OK × MO (80%). The differences across provenances show that incompatibility exists within P. incarnata but can depend on location. Overall, fruit weight, fruit size, and soluble solids content measured in this study were similar to and, in some cases, greater than those previously reported. These differences help to illustrate the diversity within P. incarnata and the still-untapped potential for breeding improvements. The problem of self-incompatibility is complex and there is much to learn about how Passiflora species, especially P. incarnata, function. Much of the U.S. domestic market is not familiar with passion fruit, especially as a table fresh product. This could be a barrier to adoption, but it could also prove to be an opportunity to create a niche within the present market and expand it. Although maypop fruit quality is not equal to that of Passiflora edulis Sims, selecting superior wild genotypes with desirable attributes to be used in future intra- and interspecific breeding is possible based on the results of this study.