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Animal body coloration is often linked to social dominance and mating success. This is because it can carry information on an animal's body condition and competitive ability by reflecting the genetic quality of individuals or by responding to their current or past living conditions. The present study investigates genetic and environmental effects on a conspicuous color pattern of the cichlid fish Tropheus sp. black "Ikola," in which the size of a carotenoid‐based yellow area on the body co‐varies with social dominance. To examine environmental plasticity of the color pattern, we tested for effects of early‐life stress, induced by reduced feeding of juveniles prior to color pattern formation, as well as effects of a stress treatment administered to fully colored adult fish. None of the stress treatments affected the color pattern as quantified by the width of the yellow bar. However, offspring bar width was correlated to parental values in mid‐parent‐mid‐offspring regression analyses, and animal models estimated significant additive genetic effects on bar width, indicating heritability of the trait. Depending on the random effects structure of the animal models (i.e., whether including or excluding maternal and brood effects), narrow‐sense heritability estimates for bar width ranged between 0.2 and 0.8, with the strongest statistical support for the highest estimate. In each of the alternative models, a large proportion of the total variance in bar width was explained by the included random effects, suggesting that bar width is strongly determined by genetic factors or shared maternal and brood environments, with limited scope for environmental influences later in life. [ABSTRACT FROM AUTHOR]

Simple Summary: Eyespot foci on butterfly wings function as organizers for eyespot color patterns during development. Here, we microscopically examined the scales, sockets, and wing membrane at the eyespot foci of butterfly wings using the Blue Pansy butterfly. Although not always, at the eyespot foci, scales showed disordered planar polarity, sockets were irregularly positioned, and the wing membrane was physically distorted. Physical damage in the background area induced ectopic patterns with socket array irregularities and wing membrane distortions, similar to natural eyespot foci. These results suggest that either the process of determining an eyespot focus or the function of an eyespot organizer may be associated with wing-wide mechanics that physically disrupt socket cells, scale cells, and the wing membrane. Eyespot foci on butterfly wings function as organizers of eyespot color patterns during development. Despite their importance, focal structures have not been examined in detail. Here, we microscopically examined scales, sockets, and the wing membrane in the butterfly eyespot foci of both expanded and unexpanded wings using the Blue Pansy butterfly Junonia orithya. Images from a high-resolution light microscope revealed that, although not always, eyespot foci had scales with disordered planar polarity. Scanning electron microscopy (SEM) images after scale removal revealed that the sockets were irregularly positioned and that the wing membrane was physically distorted as if the focal site were mechanically squeezed from the surroundings. Focal areas without eyespots also had socket array irregularities, but less frequently and less severely. Physical damage in the background area induced ectopic patterns with socket array irregularities and wing membrane distortions, similar to natural eyespot foci. These results suggest that either the process of determining an eyespot focus or the function of an eyespot organizer may be associated with wing-wide mechanics that physically disrupt socket cells, scale cells, and the wing membrane, supporting the physical distortion hypothesis of the induction model for color pattern determination in butterfly wings. [ABSTRACT FROM AUTHOR]

The Brazilian Atlantic Forest, one the five main biodiversity hotspots in the world, still houses many organisms that are rare and unknown to science, mostly concentrated in mountain ranges. Herein, we describe a rare new species of Cambeva from the Rio Tietê drainage at the Serra da Mantiqueira, exhibiting a caudal fin color pattern comprising a light-yellowish–white bar posteriorly edged by a black pigmented area. A similar color pattern was described for C. castroi, C. diabola, and C. melanoptera, also endemic to the Rio Paraná basin, and considered evidence of close relationships among these three species. However, other morphological characteristics highly suggest that the new species is not closely related to C. castroi, C. diabola, and C. melanoptera). Herein, we perform a molecular phylogenetic analysis using two mitochondrial genes and one nuclear gene, including all species with that bicolored caudal pattern. The analysis strongly supports the new species as a member of the alpha-clade, and therefore as distantly related to those three species belonging to the beta-clade, indicating that this color pattern has homoplastically arisen in Cambeva. The data reported here reinforce the urgent need for field studies to better understand the different evolutionary patterns found in the genus, since an intense process of environmental degradation is in course. [ABSTRACT FROM AUTHOR]

The Brazilian Atlantic Forest, one the five main biodiversity hotspots in the world, still houses many organisms that are rare and unknown to science, mostly concentrated in mountain ranges. Herein, we describe a rare new species of Cambeva from the Rio Tietê drainage at the Serra da Mantiqueira, exhibiting a caudal fin color pattern comprising a light-yellowish–white bar posteriorly edged by a black pigmented area. A similar color pattern was described for C. castroi, C. diabola, and C. melanoptera, also endemic to the Rio Paraná basin, and considered evidence of close relationships among these three species. However, other morphological characteristics highly suggest that the new species is not closely related to C. castroi, C. diabola, and C. melanoptera). Herein, we perform a molecular phylogenetic analysis using two mitochondrial genes and one nuclear gene, including all species with that bicolored caudal pattern. The analysis strongly supports the new species as a member of the alpha-clade, and therefore as distantly related to those three species belonging to the beta-clade, indicating that this color pattern has homoplastically arisen in Cambeva. The data reported here reinforce the urgent need for field studies to better understand the different evolutionary patterns found in the genus, since an intense process of environmental degradation is in course.

Simple Summary: The Chironomidae family stands out as the most widely dispersed and often the most abundant insect group in freshwater habitats. The significance of color patterns is well-recognized, as they fulfill multiple roles such as communication, camouflage, mimicking, and defense. However, the taxonomy of species within this family, relying on color patterns, as well as the shape and distribution of thoracic pigmentation, wing markings, and leg pigmentation, remains controversial and unstable. Here, we conduct a comprehensive review on the taxonomy of a Chiromidae genus, Stictochironomus from China, which is characterized by a combination of distinctive wing and leg markings. Using DNA barcode data and morphological data, two new species to science from China are well supported. Species delimitation analyses performed with distance-based approach and coalescent tree-based approaches also support them as distinct species. Therefore, color patterns should be a good diagnostic characteristic for species delimitation in Stictochironomus. Furthermore, we provided an up-to-date taxonomic key for male adults of Stictochironomus from China. The genus Stictochironomus (Diptera: Chironomidae) has an almost worldwide distribution, with more than 30 species. However, species delimitation and identification based on the markings on the wings and legs are controversial and uncertain. In this study, we focused on color patterns to review the adults of the genus from China, and two new species (S. trifuscipes sp. nov. and S. quadrimaculatus sp. nov.) are described and figured. DNA barcodes can accurately separate the two new species with specific color patterns. However, heterospecific individuals form a monophyletic cluster in the phylogeny tree. For example, S. maculipennis (Meigen) and S. pictulus (Meigen), which have a lower interspecific genetic divergence, form a single clade. Sequences with the same species name but with high intraspecific distance form more than one phylogenetic clade, such as S. sticticus (Fabricius) of three clades, S. pictulus of four clades, S. akizukii (Tokunaga) and S. juncaii Qi, Shi, and Wang of two clades, might have potential cryptic species diversity. Species delimitation analysis using ASAP, PTP, and GMYC clearly delineated them as separate species. Consequently, color patterns are a good diagnostic characteristic for species delimitation in Stictochironomus. The distance-based analysis shows that a threshold of 4.5–7.7% is appropriate for species delimitation in Stictochironomus. Additionally, an updated key including color pattern variation for male adults of known Stictochironomus species from China is provided. [ABSTRACT FROM AUTHOR]

Background: Well‐being is commonly communicated across industries; however, experimental understanding how human perceive skin health and skin stresses are not sufficient. Materials and Methods: Image analysis algorithm, a* gradient, was developed to evaluate spatial pattern and shape of red signal on skin. Human perception for skin health and stresses were compared with technical measurements in two visual perception studies. Results: a* gradient correlated with perceived Inflamed Skin (R = 0.73, p < 0.01), Stressed Skin (R = 0.79, p < 0.01), Sensitive Skin (R = 0.75, p < 0.01), Healthy Skin (R = ‐0.83, p < 0.01), and Start Aging (R = 0.75, p < 0.01). Conclusions: Disordered spatial pattern of redness signal drives human perception of skin health, stress, and aging. This new skin index of redness signal shows higher correlation with those human perception than basal a* mean, unevenness of a*, and other conventional skin color attributes. [ABSTRACT FROM AUTHOR]

Abstract Animal body coloration is often linked to social dominance and mating success. This is because it can carry information on an animal's body condition and competitive ability by reflecting the genetic quality of individuals or by responding to their current or past living conditions. The present study investigates genetic and environmental effects on a conspicuous color pattern of the cichlid fish Tropheus sp. black “Ikola,” in which the size of a carotenoid‐based yellow area on the body co‐varies with social dominance. To examine environmental plasticity of the color pattern, we tested for effects of early‐life stress, induced by reduced feeding of juveniles prior to color pattern formation, as well as effects of a stress treatment administered to fully colored adult fish. None of the stress treatments affected the color pattern as quantified by the width of the yellow bar. However, offspring bar width was correlated to parental values in mid‐parent‐mid‐offspring regression analyses, and animal models estimated significant additive genetic effects on bar width, indicating heritability of the trait. Depending on the random effects structure of the animal models (i.e., whether including or excluding maternal and brood effects), narrow‐sense heritability estimates for bar width ranged between 0.2 and 0.8, with the strongest statistical support for the highest estimate. In each of the alternative models, a large proportion of the total variance in bar width was explained by the included random effects, suggesting that bar width is strongly determined by genetic factors or shared maternal and brood environments, with limited scope for environmental influences later in life.

Objective: This study aims to evaluate the diagnostic performance of quantitative shear wave elastography (SWE) and a new qualitative color pattern SWE for the differentiation of benign and malignant American College of Radiology Thyroid Imaging, Reporting, and Data System (ACR TI-RADS) 4 or 5 category thyroid nodules measuring =10 mm. Materials and methods: From May 2020 to July 2022, a total of 237 patients with 270 thyroid nodules were enrolled, and conventional ultrasound and SWE examinations were performed for each patient. Each ACR TI-RADS 4 or 5 category thyroid nodule measuring =10 mm was evaluated by quantitative SWE and a new qualitative color pattern SWE. The diagnostic performance of quantitative SWE parameters, the new qualitative color pattern SWE, and the combination of SWE with ACR TI-RADS, respectively, for the differentiation of benign and malignant ACR TI-RADS 4 or 5 category thyroid nodules measuring =10 mm was evaluated and compared. Results: Among 270 thyroid nodules in 237 patients, 72 (26.67%) thyroid nodules were benign and 198 (73.33%) thyroid nodules were malignant. The qualitative color pattern SWE showed better diagnostic performance than the quantitative SWE parameters. When combining the qualitative color pattern SWE with ACR TIRADS scores, with the optimal cutoff value of the total points =8, the thyroid nodules were considered malignant. The sensitivity, specificity, accuracy, and AUC were 89.90%, 56.94%, 81.11%, and 0.820 (95% CI: 0.768-0.864), respectively. Compared with using qualitative color pattern SWE alone, the combination of qualitative color pattern SWE and ACR TI-RADS had better diagnostic performance, which was significantly different (p < 0.05). Conclusion: The combination of qualitative SWE color patterns and ACR TIRADS had high sensitivity and accuracy, which might be a convenient and useful method to differentiate benign and malignant ACR TI-RADS 4 or 5 category thyroid nodules measuring =10 mm. It would be helpful for the management of thyroid nodules and improving prognosis. [ABSTRACT FROM AUTHOR]

A new species of Brachychalcinus is described from the rio Mapaoni, rio Jari basin, and the coastal rio Araguari, Amapá and Pará states, Brazil. The new species is distinguished from all congeners, except B. reisi, by possessing conspicuous longitudinal dark stripes across the body. It can be diagnosed from B. reisi by having longer predorsal and preanal spines, by having scales with few curved radii, and by having more scale rows between lateral line and midventral scale series. A single specimen from rio Tapajós (Pará, Brazil) bears all the diagnostic features of the new species and is herein tentatively identified as belonging to this taxon, extending its distribution to this river basin. [ABSTRACT FROM AUTHOR]

Aposematic prey advertise their unprofitability with conspicuous warning signals that are often composed of multiple color patterns. Many species show intraspecific variation in these patterns even though selection is expected to favor invariable warning signals that enhance predator learning. However, if predators acquire avoidance to specific signal components, this might relax selection on other aposematic traits and explain variability. Here, we investigated this idea in the aposematic moth Amata nigriceps that has conspicuous black and orange coloration. The size of the orange spots in the wings is highly variable between individuals, whereas the number and width of orange abdominal stripes remains consistent. We produced artificial moths that varied in the proportion of orange in the wings or the presence of abdominal stripes. We presented these to a natural avian predator, the noisy miner (Manorina melanocephala) , and recorded how different warning signal components influenced their attack decisions. When moth models had orange stripes on the abdomen, birds did not discriminate between different wing signals. However, when the stripes on the abdomen were removed, birds chose the model with smaller wing spots. In addition, we found that birds were more likely to attack moths with a smaller number of abdominal stripes. Together, our results suggest that bird predators primarily pay attention to the abdominal stripes of A. nigriceps, and this could relax selection on wing coloration. Our study highlights the importance of considering individual warning signal components if we are to understand how predation shapes selection on prey warning coloration. [ABSTRACT FROM AUTHOR]

Under the production mode of small-batch and multi-item, the recognition of yarn-dyed fabric patterns is a crucial task in the textile industry. In this article, an automatic recognition system based on pixel-level features is proposed to recognize the density, the weave pattern, and the color pattern. In this system, the fabric images are captured by a scanner. First, a method based on the Hough transform is used to correct the skew of the yarns, including warp and weft. Second, the yarns and nodes are located in the enhanced images with a brightness-projection method. The density can be calculated by using the results. Then, the type of each node is identified based on the boundary information. We can obtain the weave pattern after knowing the type of each node. Finally, the fuzzy C-means algorithm is used to determine the color of each node, and thus we obtain the color pattern of the yarn-dyed fabric. Experimental results demonstrate that the proposed recognition system is effective for detecting the structural parameters of yarn-dyed fabric. [ABSTRACT FROM AUTHOR]

The color pattern of insects is one of the most diverse adaptive evolutionary phenotypes. However, the molecular regulation of this color pattern is not fully understood. In this study, we found that the transcription factor Bm-mamo is responsible for black dilute (bd) allele mutations in the silkworm. Bm-mamo belongs to the BTB zinc finger family and is orthologous to mamo in Drosophila melanogaster. This gene has a conserved function in gamete production in Drosophila and silkworms and has evolved a pleiotropic function in the regulation of color patterns in caterpillars. Using RNAi and clustered regularly interspaced short palindromic repeats (CRISPR) technology, we showed that Bm-mamo is a repressor of dark melanin patterns in the larval epidermis. Using in vitro binding assays and gene expression profiling in wild-type and mutant larvae, we also showed that Bm-mamo likely regulates the expression of related pigment synthesis and cuticular protein genes in a coordinated manner to mediate its role in color pattern formation. This mechanism is consistent with the dual role of this transcription factor in regulating both the structure and shape of the cuticle and the pigments that are embedded within it. This study provides new insight into the regulation of color patterns as well as into the construction of more complex epidermal features in some insects.

Eyespot foci on butterfly wings function as organizers of eyespot color patterns during development. Despite their importance, focal structures have not been examined in detail. Here, we microscopically examined scales, sockets, and the wing membrane in the butterfly eyespot foci of both expanded and unexpanded wings using the Blue Pansy butterfly Junonia orithya. Images from a high-resolution light microscope revealed that, although not always, eyespot foci had scales with disordered planar polarity. Scanning electron microscopy (SEM) images after scale removal revealed that the sockets were irregularly positioned and that the wing membrane was physically distorted as if the focal site were mechanically squeezed from the surroundings. Focal areas without eyespots also had socket array irregularities, but less frequently and less severely. Physical damage in the background area induced ectopic patterns with socket array irregularities and wing membrane distortions, similar to natural eyespot foci. These results suggest that either the process of determining an eyespot focus or the function of an eyespot organizer may be associated with wing-wide mechanics that physically disrupt socket cells, scale cells, and the wing membrane, supporting the physical distortion hypothesis of the induction model for color pattern determination in butterfly wings.

Abstract A new species of Brachychalcinus is described from the rio Mapaoni, rio Jari basin, and the coastal rio Araguari, Amapá and Pará states, Brazil. The new species is distinguished from all congeners, except B. reisi, by possessing conspicuous longitudinal dark stripes across the body. It can be diagnosed from B. reisi by having longer predorsal and preanal spines, by having scales with few curved radii, and by having more scale rows between lateral line and midventral scale series. A single specimen from rio Tapajós (Pará, Brazil) bears all the diagnostic features of the new species and is herein tentatively identified as belonging to this taxon, extending its distribution to this river basin.

ObjectiveThis study aims to evaluate the diagnostic performance of quantitative shear wave elastography (SWE) and a new qualitative color pattern SWE for the differentiation of benign and malignant American College of Radiology Thyroid Imaging, Reporting, and Data System (ACR TI-RADS) 4 or 5 category thyroid nodules measuring ≤10 mm.Materials and methodsFrom May 2020 to July 2022, a total of 237 patients with 270 thyroid nodules were enrolled, and conventional ultrasound and SWE examinations were performed for each patient. Each ACR TI-RADS 4 or 5 category thyroid nodule measuring ≤10 mm was evaluated by quantitative SWE and a new qualitative color pattern SWE. The diagnostic performance of quantitative SWE parameters, the new qualitative color pattern SWE, and the combination of SWE with ACR TI-RADS, respectively, for the differentiation of benign and malignant ACR TI-RADS 4 or 5 category thyroid nodules measuring ≤10 mm was evaluated and compared.ResultsAmong 270 thyroid nodules in 237 patients, 72 (26.67%) thyroid nodules were benign and 198 (73.33%) thyroid nodules were malignant. The qualitative color pattern SWE showed better diagnostic performance than the quantitative SWE parameters. When combining the qualitative color pattern SWE with ACR TI-RADS scores, with the optimal cutoff value of the total points ≥8, the thyroid nodules were considered malignant. The sensitivity, specificity, accuracy, and AUC were 89.90%, 56.94%, 81.11%, and 0.820 (95% CI: 0.768–0.864), respectively. Compared with using qualitative color pattern SWE alone, the combination of qualitative color pattern SWE and ACR TI-RADS had better diagnostic performance, which was significantly different (p < 0.05).ConclusionThe combination of qualitative SWE color patterns and ACR TI-RADS had high sensitivity and accuracy, which might be a convenient and useful method to differentiate benign and malignant ACR TI-RADS 4 or 5 category thyroid nodules measuring ≤10 mm. It would be helpful for the management of thyroid nodules and improving prognosis.

There are numerous examples of Batesian mimics that only imperfectly resemble their models. Given that inaccurate mimics are known to be predated more frequently than accurate ones, imperfect mimicry therefore poses something of a conundrum. One putative explanation, the relaxed selection hypothesis, predicts that when the cost of attacking a model is high relative to the benefit of consuming a mimic, selection against imperfect mimics will be relaxed, allowing mimics to be more imperfect for a given level of fitness. However, empirical support for this hypothesis is equivocal. Here, we report an experimental test of the relaxed selection hypothesis, in which human participants were tasked with discriminating between artificial stimuli representing models and mimics. In response to "attacking" a model (i.e. misclassifying it as palatable, or non-aversive) they received either a mild electric shock (high cost) or vibratory feedback (low cost). Consistent with the predictions of this hypothesis, we found that when the cost of attacking a model was high, mimetic phenotype could deviate more from the model (i.e. be more imperfect) for a given level of fitness than when the cost of attacking a model was low. Moreover, when the cost of attacking a model was high, participants showed an increased latency to attack. This finding shows that given sufficient costs, the relaxed selection hypothesis is a plausible explanation for the evolution of imperfect mimicry. [ABSTRACT FROM AUTHOR]

Based on newly collected material from the Iraqi coast, the status of the common intertidal snapping shrimp, Alpheus lobidens De Haan, 1849 species complex, is discussed. Based on several morphological characteristics as well as the color pattern, the material examined herein strongly supports the validity of A. lobidens. [ABSTRACT FROM AUTHOR]

The genus Stictochironomus (Diptera: Chironomidae) has an almost worldwide distribution, with more than 30 species. However, species delimitation and identification based on the markings on the wings and legs are controversial and uncertain. In this study, we focused on color patterns to review the adults of the genus from China, and two new species (S. trifuscipes sp. nov. and S. quadrimaculatus sp. nov.) are described and figured. DNA barcodes can accurately separate the two new species with specific color patterns. However, heterospecific individuals form a monophyletic cluster in the phylogeny tree. For example, S. maculipennis (Meigen) and S. pictulus (Meigen), which have a lower interspecific genetic divergence, form a single clade. Sequences with the same species name but with high intraspecific distance form more than one phylogenetic clade, such as S. sticticus (Fabricius) of three clades, S. pictulus of four clades, S. akizukii (Tokunaga) and S. juncaii Qi, Shi, and Wang of two clades, might have potential cryptic species diversity. Species delimitation analysis using ASAP, PTP, and GMYC clearly delineated them as separate species. Consequently, color patterns are a good diagnostic characteristic for species delimitation in Stictochironomus. The distance-based analysis shows that a threshold of 4.5–7.7% is appropriate for species delimitation in Stictochironomus. Additionally, an updated key including color pattern variation for male adults of known Stictochironomus species from China is provided.

Under the production mode of small-batch and multi-item, the recognition of yarn-dyed fabric patterns is a crucial task in the textile industry. In this article, an automatic recognition system based on pixel-level features is proposed to recognize the density, the weave pattern, and the color pattern. In this system, the fabric images are captured by a scanner. First, a method based on the Hough transform is used to correct the skew of the yarns, including warp and weft. Second, the yarns and nodes are located in the enhanced images with a brightness-projection method. The density can be calculated by using the results. Then, the type of each node is identified based on the boundary information. We can obtain the weave pattern after knowing the type of each node. Finally, the fuzzy C-means algorithm is used to determine the color of each node, and thus we obtain the color pattern of the yarn-dyed fabric. Experimental results demonstrate that the proposed recognition system is effective for detecting the structural parameters of yarn-dyed fabric.

Simple Summary: Non-biting midges are the most widely distributed, and frequently the most abundant, insect family in freshwater environments. Species delimitation concerning color patterns and the shape or distribution of thorax pigmentation, wing spots, abdomen pigmentation, and leg pigmentation are disputable and unstable in the family. This research focuses on a genus that shares the general appearance of the hypopygium, but with variations in coloration of the antennae, thorax, wings, and legs. In this study, we analyzed collected species along with public sequences, resulting in a preliminary DNA library including 21 morphospecies. DNA barcodes can successfully delimit Microtendipes species and showed deep intraspecific divergence in some species. We also confirmed that color patterns can be important diagnostic characters. As a result of this analysis, five species new to science are identified and described, and an updated key to male adults of known Microtendipes species from China is provided. The genus Microtendipes Kieffer (Diptera: Chironomidae) has a nearly worldwide distribution, comprising more than 60 species, which are further divided into two species groups based on larval stage. However, species delimitation and identification among the adults of this genus are controversial and uncertain. For instance, previous studies have provided many synonymies based on conspecific color pattern variations in Microtendipes species. Here, we used DNA barcode data to address Microtendipes species delimitation as well as to test whether color pattern variations can be diagnostic characters for interspecific identification. The 151 DNA barcodes used, 51 of which were contributed by our laboratory, represent 21 morphospecies. Species with specific color patterns could be accurately separated based on DNA barcodes. Consequently, the color patterns of adult males could be important diagnostic characters. The average intraspecific and interspecific sequence divergences were 2.8% and 12.5%, respectively, and several species exhibited deep intraspecific divergences higher than 5%. Molecular operational taxonomic units (OTUs) ranged from 21 to 73, based on methods including phylogenetic trees, the assemble species by automatic partitioning method, the Poisson tree process (PTP), and the general mixed Yule-coalescent (GMYC) method. As a result of these analyses, five new species were recognized (M. baishanzuensis sp. nov., M. bimaculatus sp. nov., M. nigrithorax sp. nov., M. robustus sp. nov., and M. wuyiensis sp. nov.). [ABSTRACT FROM AUTHOR]

Based on newly collected material from the Iraqi coast, the status of the common intertidal snapping shrimp, Alpheus lobidens De Haan, 1849 species complex, is dis[1]cussed. Based on several morphological characteristics as well as the color pattern, the material examined herein strongly supports the validity of A. lobidens.

A unique combinatorial bioluminescence (BL) imaging system was developed for determining molecular events in mammalian cells with various colors and BL intensity patterns. This imaging system consists of one or multiple reporter luciferases and a series of novel coelenterazine (CTZ) analogues named "S-series". For this study, ten kinds of novel S-series CTZ analogues were synthesized and characterized concerning the BL intensities, spectra, colors, and specificity of various marine luciferases. The characterization revealed that the S-series CTZ analogues luminesce with blue-to-orange-colored BL spectra with marine luciferases, where the most red-shifted BL spectrum peaked at 583 nm. The colors completed a visible light color palette with those of our precedent C-series CTZ analogues. The synthesized substrates S1, S5, S6, and S7 were found to have a unique specificity with marine luciferases, such as R86SG, NanoLuc (shortly, NLuc), and ALuc16. They collectively showed unique BL intensity patterns to identify the marine luciferases together with colors. The marine luciferases, R86SG, NLuc, and ALuc16, were multiplexed into multi-reporter systems, the signals of which were quantitatively unmixed with the specific substrates. When the utility was applied to a single-chain molecular strain probe, the imaging system simultaneously reported three different optical indexes for a ligand, i.e., unique BL intensity and color patterns for identifying the reporters, together with the ligand-specific fold intensities in mammalian cells. This study directs a new combinatorial BL imaging system to specific image molecular events in mammalian cells with multiple optical indexes. [ABSTRACT FROM AUTHOR]

Identifying the relative importance of different mechanisms responsible for the emergence and maintenance of phenotypic diversity can be challenging, as multiple selective pressures and stochastic events are involved in these processes. Therefore, testing how environmental conditions shape the distribution of phenotypes can offer important insights on local adaptation, divergence, and speciation. The red‐yellow Müllerian mimicry ring of Heliconius butterflies exhibits a wide diversity of color patterns across the Neotropics and is involved in multiple hybrid zones, making it a powerful system to investigate environmental drivers of phenotypic distributions. Using the distantly related Heliconius erato and Heliconius melpomene co‐mimics and a multiscale distribution approach, we investigated whether distinct phenotypes of these species are associated with different environmental conditions. We show that Heliconius red‐yellow phenotypic distribution is strongly driven by environmental gradients (especially thermal and precipitation variables), but that phenotype and environment associations vary with spatial scale. While co‐mimics are usually predicted to occur in similar environments at large spatial scales, patterns at local scales are not always consistent (i.e., different variables are best predictors of phenotypic occurrence in different locations) or congruent (i.e., co‐mimics show distinct associations with environment). We suggest that large‐scale analyses are important for identifying how environmental factors shape broad mimetic phenotypic distributions, but that local studies are essential to understand the context‐dependent biotic, abiotic, and historical mechanisms driving finer‐scale phenotypic transitions. [ABSTRACT FROM AUTHOR]

Abstract Cambeva contains species with complex taxonomy or poorly delimitated in terms of morphology and geopraphic distribution. We conducted an extensive review of Cambeva populations from coastal drainages of Southern to Southeastern Brazil to evaluate species geographic limits with an integrative analysis including morphological and molecular data (COI). We test if two single-locus methods, Bayesian Poisson Tree Processes (bPTP) and Generalized Mixed Yule Coalescent (GMYC), are efficient to delimit species boundaries in Cambeva by the comparison with the diagnosable morphological units. Using GMYC, we also evaluated the combination of tree and molecular clock priors to reconstruct the input phylogeny and assessed how well the implemented model fitted our empirical data. Eleven species were identified using a morphological diagnosability criterion: Cambeva balios, C. barbosae, C. botuvera, C. cubataonis, C. davisi, C. guaraquessaba, C. iheringi, C. tupinamba, and C. zonata and two treated as undescribed species. In contrast with previous knowledge, many of them have wider distribution and high intraspecific variation. Species delimitation based on single-locus demonstrated incongruences between the methods and strongly differed from the morphological delimitation. These disagreements and the violation of the GMYC model suggest that a single-locus data is insufficient to delimit Cambeva species and the failure may be attributable to events of mitochondrial introgression and incomplete lineage sorting.

Cambeva contains species with complex taxonomy or poorly delimitated in terms of morphology and geopraphic distribution. We conducted an extensive review of Cambeva populations from coastal drainages of Southern to Southeastern Brazil to evaluate species geographic limits with an integrative analysis including morphological and molecular data (COI). We test if two single-locus methods, Bayesian Poisson Tree Processes (bPTP) and Generalized Mixed Yule Coalescent (GMYC), are efficient to delimit species boundaries in Cambeva by the comparison with the diagnosable morphological units. Using GMYC, we also evaluated the combination of tree and molecular clock priors to reconstruct the input phylogeny and assessed how well the implemented model fitted our empirical data. Eleven species were identified using a morphological diagnosability criterion: Cambeva balios, C. barbosae, C. botuvera, C. cubataonis, C. davisi, C. guaraquessaba, C. iheringi, C. tupinamba, and C. zonata and two treated as undescribed species. In contrast with previous knowledge, many of them have wider distribution and high intraspecific variation. Species delimitation based on single-locus demonstrated incongruences between the methods and strongly differed from the morphological delimitation. These disagreements and the violation of the GMYC model suggest that a single-locus data is insufficient to delimit Cambeva species and the failure may be attributable to events of mitochondrial introgression and incomplete lineage sorting. [ABSTRACT FROM AUTHOR]

Simple Summary: Diverse butterfly wing color patterns are evolutionary products in response to environmental changes in the past. Environmental stress, such as temperature shock, is known to induce color pattern modifications in various butterfly species, and this phenotypic plasticity plays an important role in color pattern evolution. However, the potential contributions of phenotypic plasticity to mimicry evolution have not been evaluated. Here, we focused on the swallowtail butterfly Papilio polytes, which has nonmimetic and mimetic forms in females, to examine its plastic phenotypes. Cold shock and heat shock treatments in the nonmimetic form induced color pattern modifications that were partly similar to those of the mimetic form, and nonmimetic females were more sensitive than males and mimetic females. These results suggest that phenotypic plasticity in nonmimetic females might have provided a basis of natural selection for mimetic color patterns during evolution. Butterfly wing color patterns are sensitive to environmental stress, such as temperature shock, and this phenotypic plasticity plays an important role in color pattern evolution. However, the potential contributions of phenotypic plasticity to mimicry evolution have not been evaluated. Here, we focused on the swallowtail butterfly Papilio polytes, which has nonmimetic and mimetic forms in females, to examine its plastic phenotypes. In the nonmimetic form, medial white spots and submarginal reddish spots in the ventral hindwings were enlarged by cold shock but were mostly reduced in size by heat shock. These temperature-shock-induced color pattern modifications were partly similar to mimetic color patterns, and nonmimetic females were more sensitive than males and mimetic females. Unexpectedly, injection of tungstate, a known modification inducer in nymphalid and lycaenid butterflies, did not induce any modification, but fluorescent brightener 28, another inducer discovered recently, induced unique modifications. These results suggest that phenotypic plasticity in nonmimetic females might have provided a basis of natural selection for mimetic color patterns during evolution. [ABSTRACT FROM AUTHOR]

Nile tilapia (Oreochromis niloticus) is an important species in aquaculture and an excellent model fish for studying teleost color patterns. Colony-stimulating factor 1 receptor a (csf1ra) is critical for xanthophores development and body color formation in zebrafish and guppy. In this study, we established csf1ra mutant lines with two different targets by CRISPR/Cas9 in Nile tilapia. Unlike the wild type fish (WT) with vertical bars, the homozygous mutants showed two different color patterns, either uniformly gray (GT) or gray with black tail (BT). Compared with WT, the mutants had fewer melanophores, a few xanthophores and no erythrophores. Increased numbers of melanophores were observed in the tail of BT mutants. However, the establishment of early embryonic pigment cell precursors and the appearance of melanophores on the body were independent of csf1ra. In contrast, the appearance of xanthophores on the body and the formation of the vertical bar pattern dependent on the late metamorphic melanophores required csf1ra. The deletion of xanthophores and erythrophores caused by csf1ra mutation changed the body color pattern of Nile tilapia. These results demonstrated that csf1ra activity is essential for the development of erythrophores, late developing xanthophores and late metamorphic melanophores. These mutants provided good models for analyzing the genetic basis of tilapia body color pattern formation. Our study may help deepen the understanding of the formation of fish body color pattern, especially for cichlids with vertical bars. In addition, the mutants might be developed as ornamental fish (BT) or new strains for aquaculture.

The genus Microtendipes Kieffer (Diptera: Chironomidae) has a nearly worldwide distribution, comprising more than 60 species, which are further divided into two species groups based on larval stage. However, species delimitation and identification among the adults of this genus are controversial and uncertain. For instance, previous studies have provided many synonymies based on conspecific color pattern variations in Microtendipes species. Here, we used DNA barcode data to address Microtendipes species delimitation as well as to test whether color pattern variations can be diagnostic characters for interspecific identification. The 151 DNA barcodes used, 51 of which were contributed by our laboratory, represent 21 morphospecies. Species with specific color patterns could be accurately separated based on DNA barcodes. Consequently, the color patterns of adult males could be important diagnostic characters. The average intraspecific and interspecific sequence divergences were 2.8% and 12.5%, respectively, and several species exhibited deep intraspecific divergences higher than 5%. Molecular operational taxonomic units (OTUs) ranged from 21 to 73, based on methods including phylogenetic trees, the assemble species by automatic partitioning method, the Poisson tree process (PTP), and the general mixed Yule-coalescent (GMYC) method. As a result of these analyses, five new species were recognized (M. baishanzuensis sp. nov., M. bimaculatus sp. nov., M. nigrithorax sp. nov., M. robustus sp. nov., and M. wuyiensis sp. nov.).

A unique combinatorial bioluminescence (BL) imaging system was developed for determining molecular events in mammalian cells with various colors and BL intensity patterns. This imaging system consists of one or multiple reporter luciferases and a series of novel coelenterazine (CTZ) analogues named “S-series”. For this study, ten kinds of novel S-series CTZ analogues were synthesized and characterized concerning the BL intensities, spectra, colors, and specificity of various marine luciferases. The characterization revealed that the S-series CTZ analogues luminesce with blue-to-orange-colored BL spectra with marine luciferases, where the most red-shifted BL spectrum peaked at 583 nm. The colors completed a visible light color palette with those of our precedent C-series CTZ analogues. The synthesized substrates S1, S5, S6, and S7 were found to have a unique specificity with marine luciferases, such as R86SG, NanoLuc (shortly, NLuc), and ALuc16. They collectively showed unique BL intensity patterns to identify the marine luciferases together with colors. The marine luciferases, R86SG, NLuc, and ALuc16, were multiplexed into multi-reporter systems, the signals of which were quantitatively unmixed with the specific substrates. When the utility was applied to a single-chain molecular strain probe, the imaging system simultaneously reported three different optical indexes for a ligand, i.e., unique BL intensity and color patterns for identifying the reporters, together with the ligand-specific fold intensities in mammalian cells. This study directs a new combinatorial BL imaging system to specific image molecular events in mammalian cells with multiple optical indexes.

Foliar pigmentation patterns vary among plant species and growth conditions. In this study, we utilize hyperspectral imaging to assess foliar pigmentation in the bryophyte Marchantia polymorpha under nutrient stress and identify associated genetic factors. Using singular value decomposition (SVD) for feature selection, we quantitate color variations induced by deficiencies in phosphate, nitrate, magnesium, calcium, and iron. Pseudo-colored thallus images show that disrupting MpWRKY10 causes irregular pigmentation with auronidin accumulation. Transcriptomic profiling shows that MpWRKY10 regulates phenylpropanoid pathway enzymes and R2R3-MYB transcription factors during phosphate deficiency, with MpMYB14 upregulation preceding pigment accumulation. MpWRKY10 is downregulated in older, pigmented thalli under phosphate deficiency but maintained in young thalli, where it suppresses pigmentation genes. This downregulation is absent in pigmented thalli due to aging. Comparative transcriptome analysis suggests similar WRKY and MYB roles in nutrient response and pigmentation in red-leaf lettuce, alluding to conserved genetic factors controlling foliar pigmentation patterns under nutrient deficiency., Competing Interests: Declaration of interests Authors declare no competing interests., (Copyright © 2024 The Author(s). Published by Elsevier Inc. All rights reserved.)

The famously diverse body coloration of cichlid fish serves communicative functions in mating and social interactions including competition for resources. Here, we examined the effects of a color pattern trait—the width of a yellow bar on a black body—on territorial competition in males and females of a color variant ("Ikola") of the Lake Tanganyika cichlid Tropheus. First, measuring integumentary carotenoid concentrations in the yellow and black body regions, we established that wider yellow bars require more carotenoids allocated to body coloration. However, we also detected high carotenoid concentrations in the black body regions (> 100 µg/g fresh skin), raising questions about the function of non-displayed integumentary carotenoids. Behavioral experiments showed that fish with wider bars were quicker to explore an unfamiliar area of the tank. In experiments including presentations of fish dummies, the bar width of 'territorial' dummies had no effect on the latency time which test fish took to intrude into the dummies' territories. However, male test fish performed fewer aggressive acts against wide-barred than against narrow-barred dummy competitors. Our results suggest that intimidation by wide bars as well as correlations between bar width and explorative behavior may contribute to mediating success in territorial Tropheus "Ikola". [ABSTRACT FROM AUTHOR]

Animal color patterns are widely studied in ecology, evolution, and through mathematical modeling. Patterns may vary among distinct body parts such as the head, trunk or tail. As large amounts of photographic data is becoming more easily available, there is a growing need for general quantitative methods for capturing and analyzing the full complexity and details of pattern variation. Detailed information on variation in color pattern elements is necessary to understand how patterns are produced and established during development, and which evolutionary forces may constrain such a variation. Here, we develop an approach to capture and analyze variation in melanistic color pattern elements in leopard geckos. We use this data to study the variation among different body parts of leopard geckos and to draw inferences about their development. We compare patterns using 14 different indices such as the ratio of melanistic versus total area, the ellipticity of spots, and the size of spots and use these to define a composite distance between two patterns. Pattern presence/absence among the different body parts indicates a clear pathway of pattern establishment from the head to the back legs. Together with weak within-individual correlation between leg patterns and main body patterns, this suggests that pattern establishment in the head and tail may be independent from the rest of the body. We found that patterns vary greatest in size and density of the spots among body parts and individuals, but little in their average shapes. We also found a correlation between the melanistic patterns of the two front legs, as well as the two back legs, and also between the head, tail and trunk, especially for the density and size of the spots, but not their shape or inter-spot distance. Our data collection and analysis approach can be applied to other organisms to study variation in color patterns between body parts and to address questions on pattern formation and establishment in animals. [ABSTRACT FROM AUTHOR]

Animal color patterns are widely studied in ecology, evolution, and through mathematical modeling. Patterns may vary among distinct body parts such as the head, trunk or tail. As large amounts of photographic data is becoming more easily available, there is a growing need for general quantitative methods for capturing and analyzing the full complexity and details of pattern variation. Detailed information on variation in color pattern elements is necessary to understand how patterns are produced and established during development, and which evolutionary forces may constrain such a variation. Here, we develop an approach to capture and analyze variation in melanistic color pattern elements in leopard geckos. We use this data to study the variation among different body parts of leopard geckos and to draw inferences about their development. We compare patterns using 14 different indices such as the ratio of melanistic versus total area, the ellipticity of spots, and the size of spots and use these to define a composite distance between two patterns. Pattern presence/absence among the different body parts indicates a clear pathway of pattern establishment from the head to the back legs. Together with weak within-individual correlation between leg patterns and main body patterns, this suggests that pattern establishment in the head and tail may be independent from the rest of the body. We found that patterns vary greatest in size and density of the spots among body parts and individuals, but little in their average shapes. We also found a correlation between the melanistic patterns of the two front legs, as well as the two back legs, and also between the head, tail and trunk, especially for the density and size of the spots, but not their shape or inter-spot distance. Our data collection and analysis approach can be applied to other organisms to study variation in color patterns between body parts and to address questions on pattern formation and establishment in animals.

Visual signaling in animals can serve many uses, including predator deterrence and mate attraction. In many cases, signals used to advertise unprofitability to predators are also used for intraspecific communication. Although aposematism and mate choice are significant forces driving the evolution of many animal phenotypes, the interplay between relevant visual signals remains little explored. Here, we address this question in the aposematic passion-vine butterfly Heliconius erato by using color- and pattern-manipulated models to test the contributions of different visual features to both mate choice and warning coloration. We found that the relative effectiveness of a model at escaping predation was correlated with its effectiveness at inducing mating behavior, and in both cases wing color was more predictive of presumptive fitness benefits than wing pattern. Overall, however, a combination of the natural (local) color and pattern was most successful for both predator deterrence and mate attraction. By exploring the relative contributions of color versus pattern composition in predation and mate preference studies, we have shown how both natural and sexual selection may work in parallel to drive the evolution of specific animal color patterns.

Animal pigment patterns play important roles in behavior and, in many species, red coloration serves as an honest signal of individual quality in mate choice. Among Danio fishes, some species develop erythrophores, pigment cells that contain red ketocarotenoids, whereas other species, like zebrafish (D. rerio) only have yellow xanthophores. Here, we use pearl danio (D. albolineatus) to assess the developmental origin of erythrophores and their mechanisms of differentiation. We show that erythrophores in the fin of D. albolineatus share a common progenitor with xanthophores and maintain plasticity in cell fate even after differentiation. We further identify the predominant ketocarotenoids that confer red coloration to erythrophores and use reverse genetics to pinpoint genes required for the differentiation and maintenance of these cells. Our analyses are a first step toward defining the mechanisms underlying the development of erythrophore-mediated red coloration in Danio and reveal striking parallels with the mechanism of red coloration in birds.

Color and color pattern are critical for animal camouflage, reproduction, and defense. Few studies, however, have attempted to identify candidate genes for color and color pattern in squamate reptiles, a colorful group with over 10,000 species. We used comparative transcriptomic analyses between white, orange, and yellow skin in a color-polymorphic species of anole lizard to 1) identify candidate color and color-pattern genes in squamates and 2) assess if squamates share an underlying genetic basis for color and color pattern variation with other vertebrates. Squamates have three types of chromatophores that determine color pattern: guanine-filled iridophores, carotenoid- or pteridine-filled xanthophores/erythrophores, and melanin-filled melanophores. We identified 13 best candidate squamate color and color-pattern genes shared with other vertebrates: six genes linked to pigment synthesis pathways, and seven genes linked to chromatophore development and maintenance. In comparisons of expression profiles between pigment-rich and white skin, pigment-rich skin upregulated the pteridine pathway as well as xanthophore/erythrophore development and maintenance genes; in comparisons between orange and yellow skin, orange skin upregulated the pteridine and carotenoid pathways as well as melanophore maintenance genes. Our results corroborate the predictions that squamates can produce similar colors using distinct color-reflecting molecules, and that both color and color-pattern genes are likely conserved across vertebrates. Furthermore, this study provides a concise list of candidate genes for future functional verification, representing a first step in determining the genetic basis of color and color pattern in anoles. [ABSTRACT FROM AUTHOR]

In many fish, color patterns are striking features and can play an important role in both natural and sexual selection. Furthermore, details of color patterns are in some cases valid tools for species identification. However, fish can also show some genetic abnormalities, such as albinism and leucism. In this research, we report for the first time a new color pattern for Epinephelus costae (Steindachner, 1878), for which it is known an ontogenetic shift in color pattern, and the first case of leucism in Conger conger (Linnaeus, 1758). [ABSTRACT FROM AUTHOR]

Individual identification of animals is important for assessing the size and status of populations. Photo-based approaches, where animals are recognized by naturally occurring and visually identifiable features, such as color patterns, are cost-effective methods for this purpose. We compared five available programs (Wild-ID, Hotspotter, AmphIdent, APHIS, I3S Pattern+) for their power to semi-automatically identify dorsal patterns of the European green toad (Bufotes viridis). We created a data set of 200 pictures of known identity, two pictures for each individual, and analyzed the percentage of correctly identified animals for each software. Furthermore, we employed a generalized linear mixed model to identify important factors contributing to correct identifications. We used these results to estimate the population size of our hypothetical population. The freely available HotSpotter application performed best, identifying close to 100 % of the photos correctly. Females had a higher chance of recognition, presumably because of sex-specific differences in the pattern contrast. Population estimates were close to the expected 100 for HotSpotter, but for the other applications population size was highly overestimated. Given the clarity of our results we strongly recommend the HotSpotter software, which is a highly efficient tool for individual pattern recognition. [ABSTRACT FROM AUTHOR]

Butterfly wing color patterns are sensitive to environmental stress, such as temperature shock, and this phenotypic plasticity plays an important role in color pattern evolution. However, the potential contributions of phenotypic plasticity to mimicry evolution have not been evaluated. Here, we focused on the swallowtail butterfly Papilio polytes, which has nonmimetic and mimetic forms in females, to examine its plastic phenotypes. In the nonmimetic form, medial white spots and submarginal reddish spots in the ventral hindwings were enlarged by cold shock but were mostly reduced in size by heat shock. These temperature-shock-induced color pattern modifications were partly similar to mimetic color patterns, and nonmimetic females were more sensitive than males and mimetic females. Unexpectedly, injection of tungstate, a known modification inducer in nymphalid and lycaenid butterflies, did not induce any modification, but fluorescent brightener 28, another inducer discovered recently, induced unique modifications. These results suggest that phenotypic plasticity in nonmimetic females might have provided a basis of natural selection for mimetic color patterns during evolution.

The development of new micromineral-biofortified Andean bean cultivars with a grain pattern that meets consumers’ requirements is unprecedented. This study proposes to obtain estimates of phenotypic parameters for technological-quality traits and micromineral concentration and to select superior Andean bean lines. The cross between cultivars Hooter and Cal 96 generated the recombinant inbred line population that was evaluated in the F5:6 and F5:7 generations. Technological quality was analyzed based on grain color determined in a colorimeter: L* (dark to light), a* (green to red) and b* (blue to yellow) values; and mass of 100 grains. Micromineral concentration (iron and zinc) was obtained by acid digestion. A significant genotype effect was found for all evaluated traits, except for zinc concentration in the F5:7 generation. L*, a* and b* showed high heritability (h2 ? 90.85%) and qualitative inheritance. High heritability (h2 ? 75.57%) was also observed for mass of 100 grains and iron and zinc concentrations, which exhibited quantitative inheritance. Grains of the cranberry bean lines DFA 39-18 and DFA 01-18 are very light (L* ? 52.18), with light red (a* ? 9.49) and light yellow (b* ? 16.00) shades; large (mass of 100 grains > 40 g); and have high iron concentrations (Fe ? 95.00 mg kg-1 dry matter). Grains of the red mottled bean lines DFA 03-18, DFA 27-18 and DFA 44-18 exhibited high technological quality, i.e., are dark (33.11 < L* < 37.28), light red (16.24 < a*< 18.72) and very light yellow (b* ? 9.45) shades, and large (mass of 100 grains > 40 g). These lines will be selected by the breeding program.

The color pattern of insects is one of the most diverse adaptive evolutionary phenotypes. However, the molecular regulation of this color pattern is not fully understood. In this study, we found that the transcription factor Bm-mamo is responsible for black dilute ( bd ) allele mutations in the silkworm. Bm-mamo belongs to the BTB zinc finger family and is orthologous to mamo in Drosophila melanogaster . This gene has a conserved function in gamete production in Drosophila and silkworms and has evolved a pleiotropic function in the regulation of color patterns in caterpillars. Using RNAi and clustered regularly interspaced short palindromic repeats (CRISPR) technology, we showed that Bm-mamo is a repressor of dark melanin patterns in the larval epidermis. Using in vitro binding assays and gene expression profiling in wild-type and mutant larvae, we also showed that Bm-mamo likely regulates the expression of related pigment synthesis and cuticular protein genes in a coordinated manner to mediate its role in color pattern formation. This mechanism is consistent with the dual role of this transcription factor in regulating both the structure and shape of the cuticle and the pigments that are embedded within it. This study provides new insight into the regulation of color patterns as well as into the construction of more complex epidermal features in some insects., Competing Interests: SW, XT, CP, JL, CZ, KL, CL, XD, XD, YL, HH, DT, FD No competing interests declared, (© 2023, Wu et al.)

BackgroundAnalysis of genomic sequence allows characterization of genome content and organization, and access beyond gene-coding regions for identification of functional elements. BAC libraries, where relatively large genomic regions are made readily available, are especially useful for species without a fully sequenced genome and can increase genomic coverage of phylogenetic and biological diversity. For example, no butterfly genome is yet available despite the unique genetic and biological properties of this group, such as diversified wing color patterns. The evolution and development of these patterns is being studied in a few target species, including Bicyclus anynana, where a whole-genome BAC library allows targeted access to large genomic regions.Methodology/Principal FindingsWe characterize ∼1.3 Mb of genomic sequence around 11 selected genes expressed in B. anynana developing wings. Extensive manual curation of in silico predictions, also making use of a large dataset of expressed genes for this species, identified repetitive elements and protein coding sequence, and highlighted an expansion of Alcohol dehydrogenase genes. Comparative analysis with orthologous regions of the lepidopteran reference genome allowed assessment of conservation of fine-scale synteny (with detection of new inversions and translocations) and of DNA sequence (with detection of high levels of conservation of non-coding regions around some, but not all, developmental genes).ConclusionsThe general properties and organization of the available B. anynana genomic sequence are similar to the lepidopteran reference, despite the more than 140 MY divergence. Our results lay the groundwork for further studies of new interesting findings in relation to both coding and non-coding sequence: 1) the Alcohol dehydrogenase expansion with higher similarity between the five tandemly-repeated B. anynana paralogs than with the corresponding B. mori orthologs, and 2) the high conservation of non-coding sequence around the genes wingless and Ecdysone receptor, both involved in multiple developmental processes including wing pattern formation.

Some Asiatic hybrid lily cultivars develop bicolor tepals, which consist of anthocyanin-pigmented upper halves and un-pigmented lower halves. MYB12, a subgroup 6 member of R2R3-MYB that positively regulates anthocyanin biosynthesis, is downregulated in the lower halves. However, MYB12 is usually expressed over entire tepal regions in numerous lily cultivars. Why MYB12 of bicolor cultivars exhibits variable expression spatially in a single tepal remains unclear. Since the lily MYB12 mRNA harbored a binding site for microRNA828 (miR828), the involvement of miR828 in variable spatial accumulation of MYB12 transcripts was evaluated. We analyzed the cleavage of MYB12 mRNA, mature miR828 accumulation, and MYB12 transcript-derived siRNA generation (microRNA-seq). In the bicolor tepals, mature miR828 was more highly accumulated in the lower halves than in the upper halves, and miR828-directed cleavage of MYB12 transcripts was observed predominantly in the lower halves. Moreover, the cleavage triggered the production of secondary siRNA from MYB12 transcripts, and the siRNAs were accumulated predominantly in the lower halves. Consequently, miR828 suppressed MYB12 transcript accumulation in the white region, and the miR828/MYB12 module participated in the development of bicolor patterns in lily flowers. The results present the first example of a microRNA mediating flower color patterns. Finally, we discuss the potential of miR828 creating flower color variations through suppressing the activity of subgroup 6 R2R3-MYB positive regulators in other species.

ABSTRACT Moenkhausia melogramma is herein redescribed, based on the examination of the holotype plus additional specimens from the western Amazon basin in Brazil, Colombia, Peru, and Ecuador. Moenkhausia melogramma shares with M. collettii, M. conspicua, M. copei, M. venerei, and M. flava a broad dark longitudinal stripe across the eye, and a well-defined dark stripe on the anal-fin base. It can be promptly distinguished from these species by having two humeral blotches. Additionally, we provide comments on the putative relationships of Moenkhausia melogramma with the aforementioned congeners and the Hemigrammus lunatus species-group.

Developmental modularity has long been viewed as a hierarchical organization that facilitates evolution through modification or reuse of preexisting modules. More recently, developmental modularity has been proposed as a mechanism capable of driving rapid evolution of novel color pattern phenotypes between closely related taxa. In this scenario, recombination between modular cis-regulatory elements (CREs) generates novel phenotypes by shuffling genetic variation at preexisting color pattern modules into new arrangements. Recent functional evidence from Drosophila flies and Heliconius butterflies, however, provides a series of examples in which CREs function in multiple developmental contexts and are thus highly pleiotropic. The potential prevalence of pleiotropy in CRE function could be a barrier to the proposed importance of CRE modules as a mechanism for rapid evolutionary change. Here we review the concept of developmental modularity, some examples that suggest developmental modularity underlies pattern evolution, and recent evidence that indicates modular CREs may be less common than previously expected. This leads us to suggest that alternative, non-modular hypotheses should be considered alongside proposals of modular CREs. We then propose the concept of evolutionary modularity as a specific alternative to developmental modularity when discrete, seemingly modular, phenotypes occur in hybridizing taxa. We suggest that evolutionary modularity provides a potentially important pathway for exchange of phenotypic elements between hybridizing taxa independent of the underlying developmental architecture.

The nymphalid groundplan, an idealized schematic illustrating the essential elements of butterfly wing patterns, predicts a consistent relationship between color pattern and wing venation. Moths in the family Geometridae have wing shapes and patterns that often resemble those of butterflies, and until recently, this family was believed to be among butterflies’ closest relatives. However, an examination of the geometrid genus Dichromodes Guenée, 1858 shows no consistent relationship between the central symmetry system and wing venation. Whereas the distal edge of the central symmetry system is predicted to reach the costal margin proximal to the Subcostal vein in butterflies and acronictine moths, it has no consistent relationship with the Subcostal, Radius, or Radial Sector 1 veins in Dichromodes. This finding highlights developmental diversity that was previously overlooked due to the overwhelming preference for butterflies in studies of lepidopteran wing patterns.

Wing pattern evolution in Heliconius butterflies provides some of the most striking examples of adaptation by natural selection. The genes controlling pattern variation are classic examples of Mendelian loci of large effect, where allelic variation causes large and discrete phenotypic changes and is responsible for both convergent and highly divergent wing pattern evolution across the genus. We characterize nucleotide variation, genotype-by-phenotype associations, linkage disequilibrium (LD), and candidate gene expression patterns across two unlinked genomic intervals that control yellow and red wing pattern variation among mimetic forms of Heliconius erato. Despite very strong natural selection on color pattern, we see neither a strong reduction in genetic diversity nor evidence for extended LD across either patterning interval. This observation highlights the extent that recombination can erase the signature of selection in natural populations and is consistent with the hypothesis that either the adaptive radiation or the alleles controlling it are quite old. However, across both patterning intervals we identified SNPs clustered in several coding regions that were strongly associated with color pattern phenotype. Interestingly, coding regions with associated SNPs were widely separated, suggesting that color pattern alleles may be composed of multiple functional sites, conforming to previous descriptions of these loci as "supergenes." Examination of gene expression levels of genes flanking these regions in both H. erato and its co-mimic, H. melpomene, implicate a gene with high sequence similarity to a kinesin as playing a key role in modulating pattern and provides convincing evidence for parallel changes in gene regulation across co-mimetic lineages. The complex genetic architecture at these color pattern loci stands in marked contrast to the single casual mutations often identified in genetic studies of adaptation, but may be more indicative of the type of genetic changes responsible for much of the adaptive variation found in natural populations.