35 results on '"Zhe, Nie"'
Search Results
2. The pth Moment Exponential Synchronization of Drive-Response Memristor Neural Networks Subject to Stochastic Perturbations
- Author
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Xiaobo Wang, Xuefei Wu, Zhe Nie, and Zengxian Yan
- Subjects
Electronic computers. Computer science ,QA75.5-76.95 - Abstract
In this paper, the pth moment exponential synchronization problems of drive-response stochastic memristor neural networks are studied via a state feedback controller. The dynamics of the memristor neural network are nonidentical, consisting of both asymmetrically nondelayed and delayed coupled, state-dependent, and subject to exogenous stochastic perturbations. The pth moment exponential synchronization of these drive-response stochastic memristor neural networks is guaranteed under some testable and computable sufficient conditions utilizing differential inclusion theory and Filippov regularization. Finally, the correctness and effectiveness of our theoretical results are demonstrated through a numerical example.
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- 2023
- Full Text
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3. Research on intelligent traffic light control system based on dynamic Bayesian reasoning
- Author
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Zhengxing, Xiao, Qing, Jiang, Zhe, Nie, Rujing, Wang, Zhengyong, Zhang, He, Huang, Bingyu, Sun, Liusan, Wang, and Yuanyuan, Wei
- Published
- 2020
- Full Text
- View/download PDF
4. Outer Synchronization of Drive-Response Complex-Valued Complex Networks via Intermittent Pinning Control
- Author
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Xuefei Wu, Jianwen Feng, and Zhe Nie
- Subjects
Electronic computers. Computer science ,QA75.5-76.95 - Abstract
This paper is concerned with the outer exponential synchronization of the drive-response complex dynamical networks subject to time-varying delays. The dynamics of nodes is complex valued, the interactions among of the nodes are directed, and the two coupling matrices in the drive system and the response system are also different. The intermittent pinning control is proposed to achieve outer exponential synchronization in the aperiodical way. Some novel sufficient conditions are derived to guarantee outer exponential synchronization of the considered complex-valued complex networks by using the Lyapunov functional method. Finally, two numerical examples are presented to illustrate the effectiveness of the proposed control protocols.
- Published
- 2021
- Full Text
- View/download PDF
5. High-speed hardware architecture for implementations of multivariate signature generations on FPGAs
- Author
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Haibo Yi and Zhe Nie
- Subjects
Cryptographic system ,Multivariate-Quadratic-Equations Public Key Cryptography (MPKC) ,Multivariate signature ,Field-Programmable Gate Array (FPGA) ,Telecommunication ,TK5101-6720 ,Electronics ,TK7800-8360 - Abstract
Abstract Multivariate signature belongs to Multivariate-Quadratic-Equations Public Key Cryptography (MPKC), which is secure to quantum computer attacks. Compared with RSA and ECC, it is required to speed up multivariate signature implementations. A high-speed hardware architecture for signature generations of a multivariate scheme is proposed in this paper. The main computations of signature generations of multivariate schemes are additions, multiplications, inversions, and solving systems of linear equations (LSEs) in a finite field. Thus, we improve the finite field multiplications via using composite field expression and design a finite field inversion via using binary trees. Besides, we improve solving LSEs in a finite field based on a variant algorithm of Gauss-Jordan elimination and use the XOR gates to compute additions. We implement the high-speed hardware architecture based on the above improvements on an Altera Stratix Field-Programmable Gate Array (FPGA), which shows that it takes only 90 clock cycles and 0.9 μs to generate a multivariate signature. The comparison shows that the hardware architecture is much faster than other implementations.
- Published
- 2018
- Full Text
- View/download PDF
6. Synchronization of Two Nonidentical Complex Dynamical Networks via Periodically Intermittent Pinning
- Author
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Xuefei Wu and Zhe Nie
- Subjects
Complex networks ,exponential synchronization in mean square ,stochastic perturbations ,periodically intermittent pinning ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
Here, the exponential synchronization about mean square problem of two complex dynamical networks with stochastic perturbations is investigated. A novel drive-response complex network model is formulated which is linear coupling with both time-varying delay and non-delay, meanwhile, this model also includes stochastic perturbations of vector-form. Based on the Lyapunov steady theory, stochastic differential equations, and matrix theory, several effective synchronous conditions are obtained to ensure exponential synchronization in mean square of the proposed complex dynamical networks by periodically intermittent pinning. Finally, several numerical simulations are performed to verify the theoretical results and the control methodology.
- Published
- 2018
- Full Text
- View/download PDF
7. Improving Security of Internet of Vehicles Based on Post-quantum Signatures with Systolic Divisions
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Haibo Yi, Ruinan Chi, Xin Huang, Xuejun Cai, and Zhe Nie
- Subjects
Computer Networks and Communications - Abstract
Internet of Things (IoT) techniques have been employed in many areas, e.g., vehicles, smart home, and medicine. Among the applications of IoTs, the Internet of Vehicles (IoV) is one of the most popular techniques. IoVs are protected by public key cryptographic systems, such as RSA and ECC. However, such systems are vulnerable to quantum computer attacks. Thus, we improve the security of IoV-based post-quantum signatures, which can resist quantum computer attacks. The key operations are divisions in a finite field. Hence, we improve the security of IoV-based post-quantum signatures with division by employing systolic architectures. We propose a systolic architecture for computing division in composite fields. After that, we improve the IoT security-based post-quantum signatures with systolic divisions. We test and verify our design on a Field-Programmable Gate Array (FPGA); the experimental results confirm our estimates. Furthermore, the optimized method proposed can be further applied to various applications like solving system of linear equations and cryptographic applications for IoT security.
- Published
- 2022
8. Supplementary Figure 1 from TAK-960, a Novel, Orally Available, Selective Inhibitor of Polo-Like Kinase 1, Shows Broad-spectrum Preclinical Antitumor Activity in Multiple Dosing Regimens
- Author
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Erik Kupperman, Keisuke Kuida, Johnny Yang, Lilly Zhang, Zhe Nie, Sheldon Cao, Takashi Ichikawa, Takashi Sato, Tomohiro Kawamoto, Maki Hasegawa, Noriko Uchiyama, Saomi Murai, Isao Kaieda, Hitoshi Miyashita, Kouki Hikami, Kohei Honda, and Yuichi Hikichi
- Abstract
PDF file - 85K, Relationship between TP53 (A) or KRAS (B) gene status and TAK 960 concentration producing EC50 values. Each data point represents a mean concentration producing 50% efficacy (EC50) value for TAK 960 in an individual cell line.
- Published
- 2023
9. Supplementary Figure 2 from TAK-960, a Novel, Orally Available, Selective Inhibitor of Polo-Like Kinase 1, Shows Broad-spectrum Preclinical Antitumor Activity in Multiple Dosing Regimens
- Author
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Erik Kupperman, Keisuke Kuida, Johnny Yang, Lilly Zhang, Zhe Nie, Sheldon Cao, Takashi Ichikawa, Takashi Sato, Tomohiro Kawamoto, Maki Hasegawa, Noriko Uchiyama, Saomi Murai, Isao Kaieda, Hitoshi Miyashita, Kouki Hikami, Kohei Honda, and Yuichi Hikichi
- Abstract
PDF file - 144K, Comparison of dosing regimens.
- Published
- 2023
10. Supplementary Table 1 from TAK-960, a Novel, Orally Available, Selective Inhibitor of Polo-Like Kinase 1, Shows Broad-spectrum Preclinical Antitumor Activity in Multiple Dosing Regimens
- Author
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Erik Kupperman, Keisuke Kuida, Johnny Yang, Lilly Zhang, Zhe Nie, Sheldon Cao, Takashi Ichikawa, Takashi Sato, Tomohiro Kawamoto, Maki Hasegawa, Noriko Uchiyama, Saomi Murai, Isao Kaieda, Hitoshi Miyashita, Kouki Hikami, Kohei Honda, and Yuichi Hikichi
- Abstract
PDF file - 61K
- Published
- 2023
11. Data from TAK-960, a Novel, Orally Available, Selective Inhibitor of Polo-Like Kinase 1, Shows Broad-spectrum Preclinical Antitumor Activity in Multiple Dosing Regimens
- Author
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Erik Kupperman, Keisuke Kuida, Johnny Yang, Lilly Zhang, Zhe Nie, Sheldon Cao, Takashi Ichikawa, Takashi Sato, Tomohiro Kawamoto, Maki Hasegawa, Noriko Uchiyama, Saomi Murai, Isao Kaieda, Hitoshi Miyashita, Kouki Hikami, Kohei Honda, and Yuichi Hikichi
- Abstract
Polo-like kinase 1 (PLK1) is a serine/threonine protein kinase involved in key processes during mitosis. Human PLK1 has been shown to be overexpressed in various human cancers, and elevated levels of PLK1 have been associated with poor prognosis, making it an attractive target for anticancer therapy. TAK-960 [4-[(9-cyclopentyl-7,7-difluoro-5-methyl-6-oxo-6,7,8,9-tetrahydro-5H-pyrimido[4,5-b][1,4]diazepin-2-yl)amino]-2-fluoro-5-methoxy-N-(1-methylpiperidin-4-yl) benzamide] is a novel, investigational, orally bioavailable, potent, and selective PLK1 inhibitor that has shown activity in several tumor cell lines, including those that express multidrug-resistant protein 1 (MDR1). Consistent with PLK1 inhibition, TAK-960 treatment caused accumulation of G2–M cells, aberrant polo mitosis morphology, and increased phosphorylation of histone H3 (pHH3) in vitro and in vivo. TAK-960 inhibited proliferation of multiple cancer cell lines, with mean EC50 values ranging from 8.4 to 46.9 nmol/L, but not in nondividing normal cells (EC50 >1,000 nmol/L). The mutation status of TP53 or KRAS and MDR1 expression did not correlate with the potency of TAK-960 in the cell lines tested. In animal models, oral administration of TAK-960 increased pHH3 in a dose-dependent manner and significantly inhibited the growth of HT-29 colorectal cancer xenografts. Treatment with once daily TAK-960 exhibited significant efficacy against multiple tumor xenografts, including an adriamycin/paclitaxel-resistant xenograft model and a disseminated leukemia model. TAK-960 has entered clinical evaluation in patients with advanced cancers. Mol Cancer Ther; 11(3); 700–9. ©2011 AACR.
- Published
- 2023
12. Supplementary Figure 3 from TAK-960, a Novel, Orally Available, Selective Inhibitor of Polo-Like Kinase 1, Shows Broad-spectrum Preclinical Antitumor Activity in Multiple Dosing Regimens
- Author
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Erik Kupperman, Keisuke Kuida, Johnny Yang, Lilly Zhang, Zhe Nie, Sheldon Cao, Takashi Ichikawa, Takashi Sato, Tomohiro Kawamoto, Maki Hasegawa, Noriko Uchiyama, Saomi Murai, Isao Kaieda, Hitoshi Miyashita, Kouki Hikami, Kohei Honda, and Yuichi Hikichi
- Abstract
PDF file - 130K, Anti-tumor activity of TAK-960 in MV4-11luc disseminated leukemia model.
- Published
- 2023
13. A Computational Physics-based Approach to Predict Unbound Brain-to-Plasma Partition Coefficient, Kp,uu
- Author
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Morgan Lawrenz, Mats Svensson, Mitsunori Kato, Karen Dingley, Jackson Chief Elk, Zhe Nie, Yefen Zou, Zachary Kaplan, H. Rachel Lagiakos, Hideyuki Igawa, and Eric Therrien
- Abstract
The blood-brain barrier (BBB) plays a critical role in preventing harmful endogenous and exogenous substances from penetrating the brain. Optimal brain penetration of small molecule CNS drugs is characterized by a high unbound brain/plasma ratio (Kp,uu). While various medicinal chemistry strategies and in silico models have been reported to improve BBB penetration, none were developed to predict Kp,uu directly. We describe a physics-based computational approach, solvation free energy calculations (energy of solvation or E-sol), to predict Kp,uu. Prospective application of this method to internal CNS drug discovery programs highlighted the utility and accuracy of this new method, which showed a categorical accuracy of 79% and a R2 of 0.61 from a linear regression model.
- Published
- 2023
14. Deep Fusion Feature Based Object Detection Method for High Resolution Optical Remote Sensing Images
- Author
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Eric Ke Wang, Yueping Li, Zhe Nie, Juntao Yu, Zuodong Liang, Xun Zhang, and Siu Ming Yiu
- Subjects
high-resolution ,optical remote sensing ,object detection ,deep learning ,transfer learning ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
With the rapid growth of high-resolution remote sensing image-based applications, one of the fundamental problems in managing the increasing number of remote sensing images is automatic object detection. In this paper, we present a fusion feature-based deep learning approach to detect objects in high-resolution remote sensing images. It employs fine-tuning from ImageNet as a pre-training model to address the challenge of it lacking a large amount of training datasets in remote sensing. Besides, we improve the binarized normed gradients algorithm by multiple weak feature scoring models for candidate window selection and design a deep fusion feature extraction method with the context feature and object feature. Experiments are performed on different sizes of high-resolution optical remote sensing images. The results show that our model is better than regular models, and the average detection accuracy is 8.86% higher than objNet.
- Published
- 2019
- Full Text
- View/download PDF
15. Research on Intelligent Frequency Regulation Capability Evaluation Technology for Coal-Fired Units Based on Autonomous Controllable PLC
- Author
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Yuanming Sun, Tengyu Zhang, Xin Zhao, Zhonghua Sun, and Zhe Nie
- Subjects
History ,Computer Science Applications ,Education - Abstract
The generation frequency of grid-connected units determines the power supply reliability of the grid and primary frequency regulation, as the first guarantee to stabilize the grid frequency is affected by the category of generating units and operation mode and lacks systematic real-time optimization and monitoring means. This paper takes a 300MW sub-critical heating unit as the research object, and researches, and analyzes three aspects of signal homologation, multi-dimensional optimization, and intelligent decision-making to establish the evaluation model of the primary frequency regulation capability of the unit. The evaluation accuracy of the assessment model reaches 83%, develops the control platform based on autonomous controllable PLC, realizes intelligent dynamic control and the replacement of traditional optimization technology means, also improves the qualification rate of primary frequency regulation by about 23.2%.
- Published
- 2023
16. Outer Synchronization of Drive-Response Complex-Valued Complex Networks via Intermittent Pinning Control
- Author
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Jianwen Feng, Zhe Nie, and Xuefei Wu
- Subjects
Multidisciplinary ,Article Subject ,General Computer Science ,Computer science ,Complex valued ,QA75.5-76.95 ,Complex network ,Topology ,Synchronization ,Exponential synchronization ,Coupling (computer programming) ,Electronic computers. Computer science ,Synchronization (computer science) ,Control (linguistics) - Abstract
This paper is concerned with the outer exponential synchronization of the drive-response complex dynamical networks subject to time-varying delays. The dynamics of nodes is complex valued, the interactions among of the nodes are directed, and the two coupling matrices in the drive system and the response system are also different. The intermittent pinning control is proposed to achieve outer exponential synchronization in the aperiodical way. Some novel sufficient conditions are derived to guarantee outer exponential synchronization of the considered complex-valued complex networks by using the Lyapunov functional method. Finally, two numerical examples are presented to illustrate the effectiveness of the proposed control protocols.
- Published
- 2021
17. Discovery of CC-90011: A Potent and Selective Reversible Inhibitor of Lysine Specific Demethylase 1 (LSD1)
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David J. Hosfield, Jiangchun Xu, Young K. Chen, Matt M. Kreilein, James Marvin Veal, Chon Lai, Christophe Severin, Toufike Kanouni, Stephen W. Kaldor, Lee N. Lawton, Robert Cho, Joselyn R. Del Rosario, Ryan Stansfield, Jeffrey A. Stafford, Natalie Y.-Y. Yuen, Shawn O’Connell, Paula Alessandra Tavares-Greco, Zhe Nie, and Lihong Shi
- Subjects
Cellular differentiation ,01 natural sciences ,Structure-Activity Relationship ,03 medical and health sciences ,chemistry.chemical_compound ,Cell Line, Tumor ,Drug Discovery ,medicine ,Humans ,Enzyme Inhibitors ,Organic Chemicals ,030304 developmental biology ,ADME ,Histone Demethylases ,Flavin adenine dinucleotide ,0303 health sciences ,biology ,Tranylcypromine ,Myeloid leukemia ,0104 chemical sciences ,010404 medicinal & biomolecular chemistry ,Histone ,chemistry ,Cell culture ,biology.protein ,Cancer research ,Molecular Medicine ,Demethylase ,medicine.drug - Abstract
Histone demethylase LSDl (KDMlA) belongs to the flavin adenine dinucleotide (FAD) dependent family of monoamine oxidases and is vital in regulation of mammalian biology. Dysregulation and overexpression of LSD1 are hallmarks of a number of human diseases, particularly cancers that are characterized as morphologically poorly differentiated. As such, inhibitors of LSD1 have potential to be beneficial as a cancer therapy. The most clinically advanced inhibitors of LSDl are covalent inhibitors derived from tranylcypromine (TCP). Herein, we report the discovery of a novel series of reversible and selective LSDl inhibitors. Exploration of structure-activity relationships (SARs) and optimization of ADME properties resulted in the identification of clinical candidate CC-90011. CC-90011 exhibits potent on-target induction of cellular differentiation in acute myeloid leukemia (AML) and small cell lung cancer (SCLC) cell lines, and antitumor efficacy in patient-derived xenograft (PDX) SCLC models. CC-90011 is currently in phase 2 trials in patients with first line, extensive stage SCLC (ClinicalTrials.gov identifier: NCT03850067).
- Published
- 2020
18. Complex Projective Synchronization in Drive-Response Stochastic Complex Networks by Impulsive Pinning Control
- Author
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Xuefei Wu and Zhe Nie
- Subjects
Mathematics ,QA1-939 - Abstract
The complex projective synchronization in drive-response stochastic coupled networks with complex-variable systems is considered. The impulsive pinning control scheme is adopted to achieve complex projective synchronization and several simple and practical sufficient conditions are obtained in a general drive-response network. In addition, the adaptive feedback algorithms are proposed to adjust the control strength. Several numerical simulations are provided to show the effectiveness and feasibility of the proposed methods.
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- 2014
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19. Reactive transport of Selenite and Strontium through a goethite coated sand column
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Frank Heberling, Lukas Zunftmeister, Johannes Luetzenkirchen, Zhe Nie, Norbert Jordan, Khalil Hanna, Chunli Liu, Nicolas Finck, and Rémi Marsac
- Subjects
Technology ,Strontium ,Goethite ,chemistry ,visual_art ,visual_art.visual_art_medium ,chemistry.chemical_element ,ddc:600 ,Column (botany) ,Selenium ,Nuclear chemistry - Published
- 2021
20. Side-channel security analysis of UOV signature for cloud-based Internet of Things
- Author
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Haibo Yi and Zhe Nie
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Security analysis ,Computer Networks and Communications ,Computer science ,business.industry ,020206 networking & telecommunications ,Cloud computing ,0102 computer and information sciences ,02 engineering and technology ,Computer security ,computer.software_genre ,01 natural sciences ,Signature (logic) ,Power analysis ,Unbalanced Oil and Vinegar ,010201 computation theory & mathematics ,Hardware and Architecture ,0202 electrical engineering, electronic engineering, information engineering ,Code (cryptography) ,Side channel attack ,business ,computer ,Software ,Quantum computer - Abstract
Among Internet of Things (IoTs), cloud-based IoTs help retain the confidentiality of both device-to-cloud and cloud-to-device messages by setting up individual identities and credentials for each IoT devices. As recently been emphasized by two American institutes, National Institute of Standards and Technology (NIST) and National Security Agency (NSA), cloud-based IoTs that use RSA and ECC signatures are insecure under quantum computer attacks. To ensure the security in the cloud-based IoTs under quantum computer attacks, there is a critical need for implementations of new quantum-resistance signature systems, such as Unbalanced Oil and Vinegar (UOV), for making the cloud-based IoTs more secure and reliable. In order to analyze the security of UOV for cloud-based IoTs, we present an efficient algorithm based on side channel analysis of UOV, which combines inducing faults and Hamming distance power analysis. We implement UOV signature schemes on Sakura-G FPGA board via using Verilog-HDL code and Xilinx ISE software, where the power collection uses a 350 MHz Keysights oscilloscope. Based on the experimental results, we successfully recover all the secret keys of UOV signature, which shows that we should protect UOV and related signatures against side channel attacks when they are adopted in cloud-based IoTs.
- Published
- 2018
21. High-speed hardware architecture for implementations of multivariate signature generations on FPGAs
- Author
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Zhe Nie and Haibo Yi
- Subjects
Speedup ,Computer Networks and Communications ,Computer science ,Computation ,Multivariate-Quadratic-Equations Public Key Cryptography (MPKC) ,Multivariate signature ,lcsh:TK7800-8360 ,0102 computer and information sciences ,02 engineering and technology ,Parallel computing ,01 natural sciences ,lcsh:Telecommunication ,Public-key cryptography ,Computer Science::Hardware Architecture ,Gate array ,lcsh:TK5101-6720 ,Stratix ,ComputingMethodologies_SYMBOLICANDALGEBRAICMANIPULATION ,0202 electrical engineering, electronic engineering, information engineering ,Field-programmable gate array ,Quantum computer ,Hardware architecture ,business.industry ,lcsh:Electronics ,Computer Science Applications ,Finite field ,010201 computation theory & mathematics ,Signal Processing ,Cryptographic system ,Field-Programmable Gate Array (FPGA) ,020201 artificial intelligence & image processing ,business ,XOR gate ,Composite field - Abstract
Multivariate signature belongs to Multivariate-Quadratic-Equations Public Key Cryptography (MPKC), which is secure to quantum computer attacks. Compared with RSA and ECC, it is required to speed up multivariate signature implementations. A high-speed hardware architecture for signature generations of a multivariate scheme is proposed in this paper. The main computations of signature generations of multivariate schemes are additions, multiplications, inversions, and solving systems of linear equations (LSEs) in a finite field. Thus, we improve the finite field multiplications via using composite field expression and design a finite field inversion via using binary trees. Besides, we improve solving LSEs in a finite field based on a variant algorithm of Gauss-Jordan elimination and use the XOR gates to compute additions. We implement the high-speed hardware architecture based on the above improvements on an Altera Stratix Field-Programmable Gate Array (FPGA), which shows that it takes only 90 clock cycles and 0.9 μs to generate a multivariate signature. The comparison shows that the hardware architecture is much faster than other implementations.
- Published
- 2018
22. Characterization of Potent Paracaspase MALT1 Inhibitors for Hematological Malignancies
- Author
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Wu Yin, Zhe Nie, Karen Dingley, Michael Trzoss, Goran Krilov, Netonia Marshall, Shulu Feng, Robert Pelletier, Jeff Bell, Paul Devine, Peter Skrdla, Roman Shimanovich, Min Ye, David Calkins, Mary Grimes, Wayne Tang, Andrew Placzek, Morgan Lawrenz, Fiona McRobb, Aleksey Gerasyuto, Victoria Feher, Sayan Mondal, Kristian Jensen, Hamish Wright, Daniel Weiss, and Karen Akinsanya
- Subjects
hemic and lymphatic diseases ,Immunology ,Cell Biology ,Hematology ,Biochemistry - Abstract
Introduction: MALT1 (mucosa-associated lymphoid tissue lymphoma translocation protein 1) is a key mediator of the NF-κB signaling pathway, the main driver of a subset of B-cell lymphomas and functions by forming a complex with CARMA1 and BCL10 to mediate antigen receptor-induced lymphocyte activation. MALT1 is considered a potential therapeutic target for several subtypes of non-Hodgkin B-cell lymphomas and chronic lymphocytic leukemia (CLL). Previously, we described the discovery of novel and potent MALT1 inhibitors with anti-proliferative effects in non-Hodgkin B-cell lymphoma cells. Here, we highlight the strong anti-tumor activity of our MALT1 inhibitors across multiple tumor models and the combination potential with agents including standard-of-care. Results: Novel small molecule MALT1 inhibitors were identified using Schrodinger's proprietary physics-based free energy perturbation (FEP+) modeling technology. These molecules demonstrate strong MALT1 protein binding affinity, potent inhibition of MALT1 enzymatic activity and anti-proliferative activity in the activated B-cell (ABC) subtype of diffuse large B cell lymphoma (DLBCL) cell lines such as OCI-LY3 and OCI-LY10. In combination with approved agents, these inhibitors demonstrate strong combination potential with Bruton's tyrosine kinase (BTK) inhibitors such as ibrutinib in ABC-DLBCL cell lines. In ABC-DLBCL CDX models, our representative MALT1 inhibitor induces tumor regression as a single agent and complete tumor regression in combination with ibrutinib. Our representative MALT1 inhibitor, when tested in LY2298 PDX models, demonstrates similar results. In addition, our representative MALT1 inhibitor was explored in a CDX model derived from a Mantle cell lymphoma REC-1 cell line, and demonstrates strong anti-tumor activity of ~78% tumor growth inhibition (TGI) as a single agent. Conclusions: Schrodinger's novel, potent MALT1 protease small molecule inhibitors are efficacious in in vitro B-cell lymphoma cell proliferation assays and in in vivo B-cell lymphoma xenograft models. These data suggest that targeting MALT1 may expand therapeutic options for patients with selected B-cell lymphomas, such as ABC-DLBCL, with the possibility of expanding into other B-cell lymphomas such as MCL. Furthermore, these small molecule MALT1 inhibitors demonstrate potential in combination with BTKi to overcome drug-induced resistance in patients with relapsed/refractory B-cell lymphomas. Taken together, the data presented here strongly underscore the therapeutic potential of our MALT1 inhibitor and support further evaluation in clinical trials. Disclosures Weiss: Schrodinger: Current Employment; ARTham Therapeutics: Membership on an entity's Board of Directors or advisory committees.
- Published
- 2021
23. Identification of Potent Paracaspase MALT1 Inhibitors for Hematological Malignancies
- Author
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Yin, Wu, primary, Zhe, Nie, additional, Placzek, Andrew, additional, Trzoss, Michael, additional, Krilov, Goran, additional, Feng, Shulu, additional, Lawrenz, Morgan, additional, Pelletier, Robert, additional, Lai, George, additional, Bell, Jeff, additional, Calkins, David, additional, Grimes, Mary, additional, Tang, Wayne, additional, McRobb, Fiona, additional, Gerasyuto, Aleksey, additional, Feher, Victoria, additional, Mondal, Sayan, additional, Jensen, Kristian, additional, Wright, Hamish, additional, and Akinsanya, Karen, additional
- Published
- 2020
- Full Text
- View/download PDF
24. Deep Fusion Feature Based Object Detection Method for High Resolution Optical Remote Sensing Images
- Author
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Siu-Ming Yiu, Juntao Yu, Zuodong Liang, Zhe Nie, Yueping Li, Xun Zhang, and Eric Ke Wang
- Subjects
Computer science ,Feature extraction ,0211 other engineering and technologies ,Context (language use) ,02 engineering and technology ,transfer learning ,high-resolution ,lcsh:Technology ,lcsh:Chemistry ,0202 electrical engineering, electronic engineering, information engineering ,General Materials Science ,lcsh:QH301-705.5 ,Instrumentation ,021101 geological & geomatics engineering ,Remote sensing ,Fluid Flow and Transfer Processes ,lcsh:T ,business.industry ,Process Chemistry and Technology ,Deep learning ,General Engineering ,deep learning ,optical remote sensing ,object detection ,Object (computer science) ,lcsh:QC1-999 ,Object detection ,Computer Science Applications ,lcsh:Biology (General) ,lcsh:QD1-999 ,lcsh:TA1-2040 ,Remote sensing (archaeology) ,Feature (computer vision) ,020201 artificial intelligence & image processing ,Artificial intelligence ,lcsh:Engineering (General). Civil engineering (General) ,Transfer of learning ,business ,lcsh:Physics - Abstract
With the rapid growth of high-resolution remote sensing image-based applications, one of the fundamental problems in managing the increasing number of remote sensing images is automatic object detection. In this paper, we present a fusion feature-based deep learning approach to detect objects in high-resolution remote sensing images. It employs fine-tuning from ImageNet as a pre-training model to address the challenge of it lacking a large amount of training datasets in remote sensing. Besides, we improve the binarized normed gradients algorithm by multiple weak feature scoring models for candidate window selection and design a deep fusion feature extraction method with the context feature and object feature. Experiments are performed on different sizes of high-resolution optical remote sensing images. The results show that our model is better than regular models, and the average detection accuracy is 8.86% higher than objNet.
- Published
- 2019
- Full Text
- View/download PDF
25. Image compression and encryption algorithm based on advanced encryption standard and hyper-chaotic system
- Author
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Xiang-Tao He, Zhe Nie, Zheng-Xin Liu, and Li-Hua Gong
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business.industry ,Computer science ,Advanced Encryption Standard ,Chaotic ,business ,Encryption ,Algorithm ,Atomic and Molecular Physics, and Optics ,Electronic, Optical and Magnetic Materials ,Image compression - Published
- 2019
26. Fast Hardware Implementations of Inversions in Small Finite Fields for Special Irreducible Polynomials on FPGAs
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Haibo Yi, Weijian Li, and Zhe Nie
- Subjects
Finite field ,Hardware implementations ,General Computer Science ,Computer science ,0202 electrical engineering, electronic engineering, information engineering ,020206 networking & telecommunications ,020201 artificial intelligence & image processing ,02 engineering and technology ,Field-programmable gate array ,Computational science - Published
- 2016
27. Multi-Path Dilated Residual Network for Nuclei Segmentation and Detection
- Author
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Wang, Eric Ke, primary, Zhang, Xun, additional, Pan, Leyun, additional, Cheng, Caixia, additional, Dimitrakopoulou-Strauss, Antonia, additional, Li, Yueping, additional, and Zhe, Nie, additional
- Published
- 2019
- Full Text
- View/download PDF
28. Adsorption of Selenium and Strontium on Goethite: EXAFS Study and Surface Complexation Modeling of the Ternary Systems
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Johannes Lützenkirchen, Zhe Nie, Nicolas Finck, Frank Heberling, Chunli Liu, and Tim Pruessmann
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Technology ,Goethite ,Denticity ,Inorganic chemistry ,chemistry.chemical_element ,02 engineering and technology ,010501 environmental sciences ,01 natural sciences ,Selenium ,Adsorption ,Environmental Chemistry ,Selenium Compounds ,0105 earth and related environmental sciences ,Strontium ,Minerals ,Extended X-ray absorption fine structure ,General Chemistry ,Hydrogen-Ion Concentration ,021001 nanoscience & nanotechnology ,Isoelectric point ,chemistry ,visual_art ,visual_art.visual_art_medium ,0210 nano-technology ,Ternary operation ,ddc:600 - Abstract
Knowledge of the geochemical behavior of selenium and strontium is critical for the safe disposal of radioactive wastes. Goethite, as one of the most thermodynamically stable and commonly occurring natural iron oxy-hydroxides, promisingly retains these elements. This work comprehensively studies the adsorption of Se(IV) and Sr(II) on goethite. Starting from electrokinetic measurements, the binary and ternary adsorption systems are investigated and systematically compared via batch experiments, EXAFS analysis, and CD-MUSIC modeling. Se(IV) forms bidentate inner-sphere surface complexes, while Sr(II) is assumed to form outer-sphere complexes at low and intermediate pH and inner-sphere complexes at high pH. Instead of a direct interaction between Se(IV) and Sr(II), our results indicate an electrostatically driven mutual enhancement of adsorption. Adsorption of Sr(II) is promoted by an average factor of 5 within the typical groundwater pH range from 6 to 8 for the concentration range studied here. However, the interaction between Se(IV) and Sr(II) at the surface is two-sided, Se(IV) promotes Sr(II) outer-sphere adsorption, but competes for inner-sphere adsorption sites at high pH. The complexity of surfaces is highlighted by the inability of adsorption models to predict isoelectric points without additional constraints.
- Published
- 2017
29. Building an Efficient Web Portal for Students at Institutions of Higher Education Based on Web Crawlers
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Haibo Yi and Zhe Nie
- Subjects
Web standards ,010504 meteorology & atmospheric sciences ,Web development ,Multimedia ,Higher education ,business.industry ,Computer science ,010502 geochemistry & geophysics ,Web application security ,computer.software_genre ,01 natural sciences ,World Wide Web ,business ,Web crawler ,computer ,0105 earth and related environmental sciences - Published
- 2017
30. Discovery of TAK-659 an orally available investigational inhibitor of Spleen Tyrosine Kinase (SYK)
- Author
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Yasuyoshi Arikawa, Pamela Farrell, Betty Lam, Lihong Shi, Zhe Nie, Jones Benjamin, Jonathan Zalevsky, Takahashi Masashi, Victoria A. Feher, Isaac Hoffman, Joshua Cramlett, Corey Wyrick, Hiroshi Miyake, Jennifer Matuszkiewicz, Joanne Miura, Ron de Jong, Charles E. Grimshaw, Jason Yano, Qing Dong, Srinivasa Reddy Natala, Ewan Taylor, and Andrew John Jennings
- Subjects
0301 basic medicine ,Clinical Biochemistry ,Pharmaceutical Science ,Syk ,Antineoplastic Agents ,Biochemistry ,03 medical and health sciences ,Mice ,Structure-Activity Relationship ,0302 clinical medicine ,Mediator ,Cell Line, Tumor ,Drug Discovery ,medicine ,Animals ,Humans ,Syk Kinase ,Molecular Biology ,Protein Kinase Inhibitors ,Cell Proliferation ,Dose-Response Relationship, Drug ,Molecular Structure ,Chemistry ,Drug discovery ,Cell growth ,Organic Chemistry ,Neoplasms, Experimental ,medicine.disease ,Pyrrolidinones ,Lymphoma ,Mice, Inbred C57BL ,Haematopoiesis ,Leukemia ,030104 developmental biology ,Pyrimidines ,030220 oncology & carcinogenesis ,Cancer research ,Molecular Medicine ,Nivolumab ,Drug Screening Assays, Antitumor - Abstract
Spleen Tyrosine Kinase (SYK) is a non-receptor cytoplasmic tyrosine kinase that is primarily expressed in hematopoietic cells. SYK is a key mediator for a variety of inflammatory cells, including B cells, mast cells, macrophages and neutrophils and therefore, an attractive approach for treatment of both inflammatory diseases and oncology indications. Using in house co-crystal structure information, and structure-based drug design, we designed and optimized a novel series of heteroaromatic pyrrolidinone SYK inhibitors resulting in the selection of the development candidate TAK-659. TAK-659 is currently undergoing Phase I clinical trials for advanced solid tumor and lymphoma malignancies, a Phase Ib study in advanced solid tumors in combination with nivolumab, and PhIb/II trials for relapsed/refractory AML.
- Published
- 2016
31. TAK-960, a Novel, Orally Available, Selective Inhibitor of Polo-Like Kinase 1, Shows Broad-spectrum Preclinical Antitumor Activity in Multiple Dosing Regimens
- Author
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Saomi Murai, Isao Kaieda, Tomohiro Kawamoto, Zhe Nie, Maki Hasegawa, Takashi Sato, Erik Kupperman, Keisuke Kuida, Takashi Ichikawa, Lilly Zhang, Koki Hikami, Hitoshi Miyashita, Sheldon X. Cao, Yuichi Hikichi, Kouhei Honda, Johnny Yang, and Noriko Uchiyama
- Subjects
Cancer Research ,Administration, Oral ,Biological Availability ,Mice, Nude ,Antineoplastic Agents ,Cell Cycle Proteins ,Mice, SCID ,Polo-like kinase ,Protein Serine-Threonine Kinases ,Pharmacology ,Biology ,PLK1 ,Histones ,Mice ,Histone H3 ,Mice, Inbred NOD ,In vivo ,Cell Line, Tumor ,Neoplasms ,Proto-Oncogene Proteins ,medicine ,Animals ,Humans ,Phosphorylation ,Protein kinase A ,Protein Kinase Inhibitors ,Cell Proliferation ,Mice, Inbred BALB C ,Dose-Response Relationship, Drug ,Molecular Structure ,Kinase ,Azepines ,Cell Cycle Checkpoints ,Drugs, Investigational ,medicine.disease ,Xenograft Model Antitumor Assays ,Leukemia ,Oncology ,Cell culture ,Female ,K562 Cells ,4-Aminobenzoic Acid ,HT29 Cells - Abstract
Polo-like kinase 1 (PLK1) is a serine/threonine protein kinase involved in key processes during mitosis. Human PLK1 has been shown to be overexpressed in various human cancers, and elevated levels of PLK1 have been associated with poor prognosis, making it an attractive target for anticancer therapy. TAK-960 [4-[(9-cyclopentyl-7,7-difluoro-5-methyl-6-oxo-6,7,8,9-tetrahydro-5H-pyrimido[4,5-b][1,4]diazepin-2-yl)amino]-2-fluoro-5-methoxy-N-(1-methylpiperidin-4-yl) benzamide] is a novel, investigational, orally bioavailable, potent, and selective PLK1 inhibitor that has shown activity in several tumor cell lines, including those that express multidrug-resistant protein 1 (MDR1). Consistent with PLK1 inhibition, TAK-960 treatment caused accumulation of G2–M cells, aberrant polo mitosis morphology, and increased phosphorylation of histone H3 (pHH3) in vitro and in vivo. TAK-960 inhibited proliferation of multiple cancer cell lines, with mean EC50 values ranging from 8.4 to 46.9 nmol/L, but not in nondividing normal cells (EC50 >1,000 nmol/L). The mutation status of TP53 or KRAS and MDR1 expression did not correlate with the potency of TAK-960 in the cell lines tested. In animal models, oral administration of TAK-960 increased pHH3 in a dose-dependent manner and significantly inhibited the growth of HT-29 colorectal cancer xenografts. Treatment with once daily TAK-960 exhibited significant efficacy against multiple tumor xenografts, including an adriamycin/paclitaxel-resistant xenograft model and a disseminated leukemia model. TAK-960 has entered clinical evaluation in patients with advanced cancers. Mol Cancer Ther; 11(3); 700–9. ©2011 AACR.
- Published
- 2012
32. Optimal root choice for parallel processing of tree decompositions
- Author
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Yueping Li, Zhe Nie, and Yunting Lu
- Subjects
Fractal tree index ,Mathematical optimization ,Tree traversal ,K-ary tree ,Computer science ,Breadth-first search ,Gomory–Hu tree ,Depth-first search ,Algorithm ,Tree decomposition ,Order statistic tree ,Information Systems - Abstract
This paper deals with the root choice strategy for tree decomposition when multiple agents (processors) are deployed. Tree decomposition is one of the most important decompositions in graph theory. It not only plays a role in theoretical investigations but also has widely practical applications. The reason is that many hard problems can be divided into sub-problems within the nodes in tree decomposition. When solving problems in tree decomposition, the precedence constraints graph takes the form of a tree. The first step is to choose a root since tree decomposition does not define any root. In addition, the root choice affects the time complexity when parallel processing is employed. The main findings of this paper are: a) an algorithm for determining the root which makes the latest completion time minimum; b) some results of the allocation of the optimal root; c) an improved version algorithm using branch-and-bound strategy based on the results. In addition, remarks and future works are presented.
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- 2010
33. Crystal structures of bacterial FabH suggest a molecular basis for the substrate specificity of the enzyme
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Zhe Nie, Krzysztof Appelt, Stephen Margosiak, Joseph Cortez, Ying Su, Ketan S. Gajiwala, and Jia Lu
- Subjects
Models, Molecular ,Staphylococcus aureus ,Substrate specificity ,Molecular Sequence Data ,Biophysics ,Biology ,medicine.disease_cause ,Crystallography, X-Ray ,Biochemistry ,Enterococcus faecalis ,Microbiology ,Haemophilus influenzae ,Protein structure ,Bacterial Proteins ,Structural Biology ,3-Oxoacyl-(Acyl-Carrier-Protein) Synthase ,Genetics ,medicine ,Escherichia coli ,Transferase ,Molecular Biology ,chemistry.chemical_classification ,ATP synthase ,Molecular Structure ,Fatty acid ,Fatty acid biosynthesis ,Cell Biology ,biology.organism_classification ,Enzyme inhibition ,Enzyme ,chemistry ,biology.protein ,FabH ,Sequence Alignment - Abstract
FabH (β-ketoacyl-acyl carrier protein synthase III) is unique in that it initiates fatty acid biosynthesis, is inhibited by long-chain fatty acids providing means for feedback control of the process, and dictates the fatty acid profile of the organism by virtue of its substrate specificity. We report the crystal structures of bacterial FabH enzymes from four different pathogenic species: Enterococcus faecalis, Haemophilus influenzae, Staphylococcus aureus and Escherichia coli. Structural data on the enzyme from different species show important differences in the architecture of the substrate-binding sites that parallel the inter-species diversity in the substrate specificities of these enzymes.
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- View/download PDF
34. A new deep learning model for assisted diagnosis on electrocardiogram.
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Wang EK, Xi L, Sun RP, Wang F, Pan LY, Cheng CX, Dimitrakopoulou-Srauss A, Zhe N, and Li YP
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- Algorithms, Humans, Machine Learning, Medical Errors, Medical Informatics, Models, Cardiovascular, Neural Networks, Computer, Cardiology, Deep Learning, Diagnosis, Computer-Assisted methods, Electrocardiography, Signal Processing, Computer-Assisted, Skin pathology
- Abstract
In order to enhance the accuracy of computer aided electrocardiogram analysis, we propose a deep learning model called CBRNN to assist diagnosis on electrocardiogram for clinical medical service. It combines two sub networks which are convolutional neural network (CNN) and bi-directional recurrent neural network (BRNN). In the model, CNN with one-dimension convolution is employed to extract features for each lead of ECG, and BRNN is used to fuse features of different leads to represent deeper features. In the training step, we use more than 40 thousand training data and more than 19 thousand validation data to obtain the optimal parameters of the model. Besides, by validating our model on more than CCDD 120,000 real data, it achieves an 87.69% accuracy rate, higher than popular deep learning models such as CNN and ResNet. Our model has better accuracy than state-of-the-art models and it is also slightly higher than the average accuracy of human judgement. It can be served for the first round screening of ECG examination clinical diagnosis.
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- 2019
- Full Text
- View/download PDF
35. A sparse deep learning model for privacy attack on remote sensing images.
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Wang EK, Zhe N, Li YP, Liang ZD, Zhang X, Yu JT, and Ye YM
- Subjects
- Algorithms, Computer Simulation, Data Interpretation, Statistical, Image Processing, Computer-Assisted methods, Reproducibility of Results, Software, Deep Learning, Geographic Information Systems, Neural Networks, Computer, Privacy, Remote Sensing Technology methods
- Abstract
Deep learning tools have been a new way for privacy attacks on remote sensing images. However, since labeled data of privacy objects in remote sensing images are less, the samples for training are commonly small. Besides, traditional deep neural networks have a huge amount of parameters which leads to over complexity of models and have a great heavy of computation. They are not suitable for small sample image classification task. A sparse method for deep neural network is proposed to reduce the complexity of deep learning model with small samples. A singular value decomposition algorithm is employed to reduce the dimensions of the output feature map of the upper convolution layers, which can alleviate the input burden of the current convolution layer, and decrease a large number of parameters of the deep neural networks, and then restrain the number of redundant or similar feature maps generated by the over-complete schemes in deep learning. Experiments with two remote sensing image data sets UCMLU and WHURS show that the image classification accuracy with our sparse model is better than the plain model,which is improving the accuracy by 3%,besides, its convergence speed is faster.
- Published
- 2019
- Full Text
- View/download PDF
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