27 results on '"Yu Feng Lu"'
Search Results
2. Bivalent mRNA vaccine effectiveness against SARS-CoV-2 variants of concern
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Monika Kumari, Shih-Chieh Su, Kang-Hao Liang, Hsiu-Ting Lin, Yu-Feng Lu, Kai-Chi Chen, Wan-Yu Chen, and Han-Chung Wu
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SARS-CoV-2 ,Variants of concern (VOCs) ,Bivalent mRNA vaccines ,Vaccine efficacy ,Medicine - Abstract
Abstract Background Sequential infections with SARS-CoV-2 variants such as Alpha, Delta, Omicron and its sublineages may cause high morbidity, so it is necessary to develop vaccines that can protect against both wild-type (WT) virus and its variants. Mutations in SARS-CoV-2’s spike protein can easily alter viral transmission and vaccination effectiveness. Methods In this study, we designed full-length spike mRNAs for WT, Alpha, Delta, and BA.5 variants and integrated each into monovalent or bivalent mRNA-lipid nanoparticle vaccines. A pseudovirus neutralization assay was conducted on immunized mouse sera in order to examine the neutralizing potential of each vaccine. Results Monovalent mRNA vaccines were only effective against the same type of virus. Interestingly, monovalent BA.5 vaccination could neutralize BF.7 and BQ.1.1. Moreover, WT, Alpha, Delta, BA.5, and BF.7 pseudoviruses were broadly neutralized by bivalent mRNA vaccinations, such as BA.5 + WT, BA.5 + Alpha, and BA.5 + Delta. In particular, BA.5 + WT exhibited high neutralization against most variants of concern (VOCs) in a pseudovirus neutralization assay. Conclusions Our results show that combining two mRNA sequences may be an effective way to develop a broadly protective SARS-CoV-2 vaccine against a wide range of variant types. Importantly, we provide the optimal combination regimen and propose a strategy that may prove useful in combating future VOCs.
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- 2023
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3. Glucocorticoids Significantly Influence the Transcriptome of Bone Microvascular Endothelial Cells of Human Femoral Head
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Qing-Sheng Yu, Wan-Shou Guo, Li-Ming Cheng, Yu-Feng Lu, Jian-Ying Shen, and Ping Li
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Co-expression Network ,Intracellular Signaling Pathway ,Microvascular Endothelial Cells ,Noncoding RNAs ,Osteonecrosis ,Medicine - Abstract
Background: Appropriate expression and regulation of the transcriptome, which mainly comprise of mRNAs and lncRNAs, are important for all biological and cellular processes including the physiological activities of bone microvascular endothelial cells (BMECs). Through an intricate intracellular signaling systems, the transcriptome regulates the pharmacological response of the cells. Although studies have elucidated the impact of glucocorticoids (GCs) cell-specific gene expression signatures, it remains necessary to comprehensively characterize the impact of lncRNAs to transcriptional changes. Methods: BMECs were divided into two groups. One was treated with GCs and the other left untreated as a paired control. Differential expression was analyzed with GeneSpring software V12.0 (Agilent, Santa Clara, CA, USA) and hierarchical clustering was conducted using Cluster 3.0 software. The Gene Ontology (GO) analysis was performed with Molecular Annotation System provided by CapitalBio Corporation. Results: Our results highlight the involvement of genes implicated in development, differentiation and apoptosis following GC stimulation. Elucidation of differential gene expression emphasizes the importance of regulatory gene networks induced by GCs. We identified 73 up-regulated and 166 down-regulated long noncoding RNAs, the expression of 107 of which significantly correlated with 172 mRNAs induced by hydrocortisone. Conclusions: Transcriptome analysis of BMECs from human samples was performed to identify specific gene networks induced by GCs. Our results identified complex RNA crosstalk underlying the pathogenesis of steroid-induced necrosis of femoral head.
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- 2015
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4. Microglia in motor neuron disease: Signaling evidence from last 10 years
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Min‐Jia Wang, Lu Kang, Yao‐Zheng Wang, Bi‐Ru Yang, Chun Zhang, Yu‐Feng Lu, and Liang Kang
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Motor Neurons ,Cellular and Molecular Neuroscience ,Developmental Neuroscience ,Superoxide Dismutase ,Amyotrophic Lateral Sclerosis ,Humans ,Microglia ,Motor Neuron Disease - Abstract
Motor neuron disease (MND), including amyotrophic lateral sclerosis, spinal muscular atrophy and others, involved the upper or lower motor neurons selective loss, is characterized by neurodegeneration and neuroinflammation, in conjunction with microglia. We summarized that pathways and key mediators are associated with microglia, such as fractalkine signaling, purinergic signaling, NF-κB signaling, p38 MAPK signaling, TREM2-APOE signaling, ROCK signaling, C1q signaling, and Ion channel, which are involved in the activation, proliferation, and inflammation of microglia. This review aims to identify the microglia-related molecular target and explore potential treatment strategies for MND based on that target.
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- 2022
5. Assessment of CO2 emission reduction potentials in the Chinese oil and gas extraction industry: From a technical and cost-effective perspective
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Jin-Hua Xu, Wen-Zhi Zhao, Yu-Feng Lu, Guo-Sheng Zhang, De-Qiang Sun, and Bo-Wen Yi
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Renewable Energy, Sustainability and the Environment ,business.industry ,020209 energy ,Strategy and Management ,Financial risk ,Fossil fuel ,New energy ,Technical evaluation ,02 engineering and technology ,010501 environmental sciences ,Environmental economics ,01 natural sciences ,Industrial and Manufacturing Engineering ,0202 electrical engineering, electronic engineering, information engineering ,Renminbi ,Environmental science ,Volatility (finance) ,business ,0105 earth and related environmental sciences ,General Environmental Science ,Market penetration ,Efficient energy use - Abstract
The oil and gas extraction industry is an energy-intensive and high CO2 emission sector in China. This study estimates the cost-effective CO2 emission reduction potentials until 2050 by classifying key low-carbon technology bundles and investigating the energy efficiency, market penetration rate, and emission reduction cost of each technology bundle. A bottom-up technical evaluation model is established to give a comprehensive perspective to the Chinese oil and gas extraction industry and policymakers about the emission reduction potential and its associated cost. Results show that the carbon emission reduction potential in the Chinese oil and gas extraction industry in 2050 can reach 16.71 million tons in the case of all low-carbon technologies available and that the decrease rate can be as high as 14.3%. The contributions of emission reductions are mainly the improvement of energy efficiency, the transformation of production process, and the utilization of new energy sources. Most low-carbon technologies are cost-effective, with an average annual cost savings of 71.43 billion RMB. Nonetheless, the diffusions of low-carbon technologies are still significantly affected by energy price volatility and firms' expectations of future investment risk.
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- 2018
6. The Research on Driver's Attention Recovery Based on Various Driving Conditions
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Yu-feng Lu and Huan-huan Gao
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Vibration ,Engineering ,Road traffic safety ,business.industry ,Subliminal stimuli ,Distracted driving ,Ecg signal ,Cognitive workload ,business ,Simulation - Abstract
To study the effect of subliminal vibration to recover young drivers' attention, fifteen subjects were selected to carry out simulated driving experiments. Focusing on driving (single driving), distracted driving, dominant vibration warning driving and subliminal vibration warning driving were carried out respectively. ECG signal and driving performance of subjects were recorded under these four kinds of driving conditions. ECG signal was analyzed using MATLAB.The results indicate that compared with ECG data of single driving the increasing amplitude of subliminal vibration warning is lower than those of the other warming methods, and the driving performance of subliminal vibration warning is better than those of other warning methods. Therefore, subliminal vibration warning can effectively recover the driver's attention. It also provides a reference for the future research on the road traffic safety system.
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- 2017
7. The Influence of Curing Agent Content on the Property of Stainless Steel Flakes Epoxy Intermediate Nano-coating
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Chun-miao Shen, Sha-sha Li, Li-rong Deng, Miao Lou, Benben Yang, Yu-feng Lu, and Ying Xu
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Materials science ,Coating ,visual_art ,Nano ,visual_art.visual_art_medium ,engineering ,Epoxy ,Composite material ,engineering.material - Published
- 2017
8. Research on the Cultivation of College Students' Engineering Ability Based on Innovative Training Program
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Yu-Feng Lu
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Engineering ,Medical education ,business.industry ,business ,Training program - Published
- 2017
9. Optimal Control for Single-Phase Brushless DC Motor with Hall Sensor
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Yongming Xu, Xifeng Wang, Dawei Meng, and Yu Feng Lu
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Engineering ,General Computer Science ,business.industry ,General Engineering ,Phase (waves) ,Optimal control ,DC motor ,Root mean square ,Control theory ,Electronic engineering ,Range (statistics) ,Hall effect sensor ,Commutation ,Field-programmable gate array ,business - Abstract
This study deals with the optimization control of a single-phase brushless DC motor (BLDCM) with Hall sensor. A simple modeling method with feasible parameter identification is adopted to meet characteristics of single- phase BLDCM. With the linear Hall sensor feedback, the advantages of current-mode control scheme and soft- commutation scheme are proposed to achieve maximum efficiency over the entire speed range. This thesis also develops a low-cost and high efficiency control for single-phase BLDCM. The hardware test platform has been constructed on a single-chip Field Programmable Gate Array (FPGA) of Cyclone II Family of Altera to verify the performance and feasibility of the proposed optimization control strategies. When using the control scheme with Hall sensor, experimental results show that there are at least a 10% improvement for average value of dc-link current, a 10% improvement for RMS value of phase current and a 40% improvement for peak value of phase current.
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- 2013
10. Expression of NEDD9 in pancreatic ductal adenocarcinoma and its clinical significance
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Zhao-Shen Li, Zong-liang Liu, Yu-Zheng Xue, Li-Hua Yu, Yu-Feng Lu, Yan-Min Wu, Ying-Yue Sheng, Jian-Ping Li, Cao Haiyan, and Zhe-Qiang Wei
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Male ,Pathology ,medicine.medical_specialty ,Pancreatic ductal adenocarcinoma ,Blotting, Western ,Biology ,Real-Time Polymerase Chain Reaction ,NEDD9 ,Immunoenzyme Techniques ,Pancreatic cancer ,Biomarkers, Tumor ,medicine ,Humans ,Clinical significance ,RNA, Messenger ,Pancreas ,Adaptor Proteins, Signal Transducing ,Neoplasm Staging ,Retrospective Studies ,Messenger RNA ,Reverse Transcriptase Polymerase Chain Reaction ,Liver Neoplasms ,General Medicine ,Middle Aged ,Phosphoproteins ,Prognosis ,medicine.disease ,Pancreatic Neoplasms ,Survival Rate ,Blot ,Lymphatic Metastasis ,Immunohistochemistry ,Female ,Immunostaining ,Carcinoma, Pancreatic Ductal ,Follow-Up Studies - Abstract
The aim of this study was to investigate the expression and prognostic significance of NEDD9 in pancreatic ductal adenocarcinoma (PDA). Expressional levels of NEDD9 mRNA and protein in paired pancreatic cancer lesions and adjacent noncancerous tissues were examined by quantitative real-time PCR and western blotting. NEDD9 expression was analyzed by immunohistochemistry in 106 patients with PDA. The correlations between NEDD9 immunostaining levels and clinicopathologic factors, as well as the follow-up data of patients, were analyzed statistically. NEDD9 protein and mRNA levels were elevated in pancreatic carcinoma lesions compared with the paired adjacent noncancerous tissues. A high level of expression of NEDD9 was significantly correlated with clinical staging (P < 0.001), lymph node metastasis (P < 0.001), and histological differentiation (P < 0.001). Patients with a higher NEDD9 expression had a significantly shorter survival time than those patients with lower NEDD9 expression. The multivariate analysis revealed that NEDD9 could serve as an independent factor of poor prognosis. Our finding indicates that NEDD9 could be used as prognostic molecular marker and therapeutic target for PDA.
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- 2012
11. Synthesis and characterization of manganese-doped zinc orthosilicate phosphor powders
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Mu-Tsun Tsai, Yu-Feng Lu, and Yen-Kai Wang
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Materials science ,Dopant ,Mechanical Engineering ,Inorganic chemistry ,Metals and Alloys ,Willemite ,chemistry.chemical_element ,Phosphor ,Zinc ,engineering.material ,Nanocrystalline material ,Crystallinity ,chemistry.chemical_compound ,chemistry ,Chemical engineering ,Mechanics of Materials ,Materials Chemistry ,engineering ,Orthosilicate ,Sol-gel - Abstract
Homogeneous and nanocrystalline manganese-doped zinc orthosilicate (Zn 2 SiO 4 :Mn) phosphor powders were prepared using a sol–gel process by controlling the hydrolysis of silicon alkoxide and zinc chloride precursors. The Mn dopant content influenced the gelation rate, homogeneity, degree of agglomeration, and luminescence of powders. Mn-doped xerogel powders were amorphous and crystallized into pure willemite (α-Zn 2 SiO 4 ) structure when heated to 600 °C. After heating at 800–1000 °C, the crystallite sizes of Zn 2− x Mn x SiO 4 phosphor powders were around 15–32 nm at an Mn doping level of x = 0.2–20 mol%. The resulting powder phosphors exhibited prominent photoluminescence emission peaks centered at 520–529 nm, depending on the doping content. The intensity of the green emission was strongly related to the dopant content and improved crystallinity. Furthermore, reducing the specific surface area and pore volume further enhanced the luminous efficiency of willemite powders. The sol–gel transition, crystallinity, microstructure, and luminescent property of phosphor powders were investigated.
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- 2010
12. The Role of Stainless Steel Flakes Epoxy Intermediate Nano-coating in the Heavy-duty Nano Organic Coating System
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Yu-feng Lu, Xinan Cai, Benben Yang, Shasha Li, Jinchao Yang, and Huayu Zhao
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Materials science ,Coating ,Coating system ,visual_art ,Heavy duty ,Nano ,engineering ,visual_art.visual_art_medium ,Epoxy ,engineering.material ,Composite material - Published
- 2018
13. HoxA10 Activates Transcription of the Gene Encoding Mitogen-activated Protein Kinase Phosphatase 2 (Mkp2) in Myeloid Cells
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Peter G. Fuhrken, E. Terry Papoutsakis, Weiqi Huang, Hao Wang, Elizabeth A. Eklund, and Yu Feng Lu
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Myeloid ,Transcription, Genetic ,Cell Survival ,Apoptosis ,Biology ,Response Elements ,Biochemistry ,Gene Expression Regulation, Enzymologic ,Mice ,medicine ,Animals ,Humans ,Myeloid Cells ,Protein Phosphatase 2 ,Molecular Biology ,Transcription factor ,Oligonucleotide Array Sequence Analysis ,Homeodomain Proteins ,Myelopoiesis ,Phagocytes ,Gene Expression Regulation, Leukemic ,Gene Expression Profiling ,JNK Mitogen-Activated Protein Kinases ,RUNX1T1 ,Myeloid leukemia ,Cell Differentiation ,U937 Cells ,Cell Biology ,medicine.disease ,Leukemia, Myeloid, Acute ,Leukemia ,Haematopoiesis ,Homeobox A10 Proteins ,medicine.anatomical_structure ,Organ Specificity ,Cancer research ,Dual-Specificity Phosphatases ,Mitogen-Activated Protein Kinase Phosphatases ,CpG Islands ,Protein Tyrosine Phosphatases ,IRF8 - Abstract
HoxA10 is a homeodomain transcription factor that is frequently overexpressed in human acute myeloid leukemia. In murine bone marrow transplantation studies, HoxA10 overexpression induces a myeloproliferative disorder with accumulation of mature phagocytes in the peripheral blood and tissues. Over time, differentiation block develops in these animals, resulting in acute myeloid leukemia. In immature myeloid cells, HoxA10 represses transcription of some genes that confer the mature phagocyte phenotype. Therefore, overexpressed HoxA10 blocks differentiation by repressing myeloid-specific gene transcription in differentiating myeloid cells. In contrast, target genes involved in myeloproliferation due to HoxA10 overexpression have not been identified. To identify such genes, we screened a CpG island microarray with HoxA10 co-immunoprecipitating chromatin. We identified the DUSP4 gene, which encodes mitogen-activated protein kinase phosphatase 2 (Mkp2), as a HoxA10 target gene. We analyzed the DUSP4 5'-flank and identified two proximal-promoter cis elements that are activated by HoxA10. We find that DUSP4 transcription and Mkp2 expression decrease during normal myelopoiesis. However, this down-regulation is impaired in myeloid cells overexpressing HoxA10. In hematopoietic cells, c-Jun N-terminal kinases (Jnk) are the preferred substrates for Mkp2. Therefore, Mkp2 inhibits apoptosis by dephosphorylating (inactivating) Jnk. Consistent with this, HoxA10 overexpression decreases apoptosis in differentiating myeloid cells. Therefore, our studies identify a mechanism by which overexpressed HoxA10 contributes to inappropriate cell survival during myelopoiesis.
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- 2007
14. Electric inductance probe application of corrosion monitoring in the backfill environment
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Yu Feng Lu, Meng Zhou, Sha-sha Li, Miao Lou, and Yingjun Huang
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Inductance ,Materials science ,Mechanical engineering ,Corrosion monitoring ,Geotechnical engineering - Published
- 2015
15. HoxA10 Represses Gene Transcription in Undifferentiated Myeloid Cells by Interaction with Histone Deacetylase 2
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Jelena Andrejic, Elizabeth A. Eklund, Yu Feng Lu, Ling Bei, and Inna Goldenberg
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Chloramphenicol O-Acetyltransferase ,Transcriptional Activation ,DNA, Complementary ,Transcription, Genetic ,Recombinant Fusion Proteins ,Blotting, Western ,Histone Deacetylase 2 ,Biology ,Transfection ,Polymerase Chain Reaction ,Biochemistry ,Histone Deacetylases ,Cell Line ,Sp3 transcription factor ,Genes, Reporter ,Proto-Oncogene Proteins ,Humans ,Myeloid Cells ,Molecular Biology ,Glutathione Transferase ,Homeodomain Proteins ,Genetics ,Histone deacetylase 5 ,HDAC11 ,Histone deacetylase 2 ,HDAC10 ,Pre-B-Cell Leukemia Transcription Factor 1 ,Cell Differentiation ,DNA ,U937 Cells ,Cell Biology ,Blotting, Northern ,Precipitin Tests ,HDAC4 ,Protein Structure, Tertiary ,DNA-Binding Proteins ,Repressor Proteins ,Homeobox A10 Proteins ,Protein Biosynthesis ,Heterochromatin protein 1 ,Histone deacetylase ,Plasmids ,Protein Binding - Abstract
The homeodomain proteins, HoxA10 and Pbx1a, interact with negative cis elements to repress gene transcription in undifferentiated myeloid cells. The CYBB and NCF2 genes, which encode the gp91PHOX and p67PHOX proteins, are two such HoxA10-Pbx1a target genes. In previous studies, we found that HoxA10-Pbx1a represses transcription of these genes by two mechanisms: competition for DNA binding with transcriptional activators and endogenous repression activity. In these studies, we identify a novel molecular mechanism of endogenous transcriptional repression by HoxA10-Pbx1a. Endogenous repression activity of other Hox-Pbx1a complexes requires recruitment of transcriptional co-repressor proteins by Pbx1a. In contrast, our investigations have determined that HoxA10 has Pbx1a-independent endogenous repression activity. We find that this transcriptional repression activity is abrogated by histone deacetylase inhibitors, suggesting involvement of co-repressor proteins. Consistent with this, we identify HoxA10 amino acids 224-249 as a Pbx1-independent repression domain, which interacts with histone deacetylase 2. We have determined that this HoxA10 domain is not conserved with other Abd Hox proteins, although homology exists with other transcription factors and co-repressors. Understanding the roles different Hox proteins play in myeloid differentiation is a challenging problem. Our results suggest that insight into this problem can be obtained from biochemical characterization of the various molecular mechanisms of Hox protein function.
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- 2003
16. SHP1 Protein-tyrosine Phosphatase Regulates HoxA10 DNA Binding and Transcriptional Repression Activity in Undifferentiated Myeloid Cells
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Yu Feng Lu, Jelena Andrejic, Inna Goldenberg, Renu Kakar, and Elizabeth A. Eklund
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Time Factors ,Myeloid ,Transcription, Genetic ,Oligonucleotides ,Biochemistry ,Mice ,chemistry.chemical_compound ,Genes, Reporter ,Transcription (biology) ,Phosphorylation ,Tyrosine ,Glutathione Transferase ,Membrane Glycoproteins ,Cell Differentiation ,Helminth Proteins ,U937 Cells ,medicine.anatomical_structure ,NADPH Oxidase 2 ,Myelopoiesis ,Plasmids ,Protein Binding ,DNA, Complementary ,Recombinant Fusion Proteins ,Blotting, Western ,Phosphatase ,Biology ,Transfection ,medicine ,Animals ,Humans ,Phosphotyrosine ,Molecular Biology ,Psychological repression ,Glycoproteins ,Homeodomain Proteins ,NADPH Oxidases ,Tyrosine phosphorylation ,DNA ,Cell Biology ,Phosphoproteins ,Precipitin Tests ,Molecular biology ,Protein Structure, Tertiary ,Mice, Inbred C57BL ,Homeobox A10 Proteins ,chemistry ,Mutagenesis ,Protein Biosynthesis - Abstract
The homeodomain protein HoxA10 interacts with negative cis elements to repress gene transcription in undifferentiated myeloid cells. The CYBB and NCF2 genes, which encode the gp91(PHOX) and p67(PHOX) proteins, are two such HoxA10 target genes. During interferon gamma-induced myeloid differentiation, tyrosine phosphorylation decreases HoxA10 DNA binding affinity and transcriptional repression. Therefore, decreased HoxA10 repression contributes to increased CYBB and NCF2 transcription in differentiating myeloid cells. The current studies investigate modulation of HoxA10 repression activity during myelopoiesis. We determine that phosphorylation of tyrosine residues in the conserved homeodomain decreases HoxA10-DNA binding. We also determine that interaction of the homeodomain phosphotyrosine residues with an adjacent domain in the HoxA10 protein is necessary for decreased DNA binding affinity. Since SHP1 protein-tyrosine phosphatase antagonizes myeloid differentiation and decreases CYBB and NCF2 transcription, we investigated the influence of SHP1-protein-tyrosine phosphatase (PTP) on HoxA10 tyrosine phosphorylation. We find that SHP1-PTP activity increases HoxA10 target gene repression in undifferentiated myeloid cells. Consistent with this, SHP1-PTP interacts with HoxA10 and decreases homeodomain-tyrosine phosphorylation. These investigations suggest that SHP1-PTP activity, in undifferentiated myeloid cells, influences HoxA10 repression of myeloid-specific genes. Therefore, increased HoxA10 repression of myeloid gene transcription is a molecular mechanism for SHP1 inhibition of myeloid differentiation.
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- 2002
17. DLC-1 is a candidate biomarker methylated and down-regulated in pancreatic ductal adenocarcinoma
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Tie-Long Wu, Li-Hua Yu, Yu-Feng Lu, Jian-Ping Li, Zhao-Shen Li, Ying-Yue Sheng, Zhe-Qiang Wei, Yan-Min Wu, and Yu-Zheng Xue
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Adult ,Male ,congenital, hereditary, and neonatal diseases and abnormalities ,Pathology ,medicine.medical_specialty ,health care facilities, manpower, and services ,education ,Down-Regulation ,Gene Expression ,Kaplan-Meier Estimate ,Biology ,law.invention ,Pathogenesis ,Downregulation and upregulation ,law ,health services administration ,medicine ,Biomarkers, Tumor ,Humans ,RNA, Messenger ,Promoter Regions, Genetic ,Pancreas ,Polymerase chain reaction ,Survival analysis ,Aged ,Messenger RNA ,Tumor Suppressor Proteins ,GTPase-Activating Proteins ,General Medicine ,Methylation ,DNA Methylation ,Middle Aged ,Prognosis ,Gene Expression Regulation, Neoplastic ,Pancreatic Neoplasms ,DNA methylation ,Multivariate Analysis ,Cancer research ,Biomarker (medicine) ,Female ,Carcinoma, Pancreatic Ductal - Abstract
Pancreatic ductal adenocarcinoma (PDA) is one of the most aggressive malignancies in humans, and its prognosis is generally poor even after surgery. Many advances have been made to understand the pathogenesis of PDA; however, the molecular mechanisms that lead to pancreatic carcinogenesis are still not clearly understood. The aims of this study were to investigate the relationship between DLC-1 methylation status and clinicopathological characteristics of PDA patients and evaluate the role of DLC-1 methylation status in PDA. The expression of DLC-1 mRNA in PDA tissues was analyzed by real-time PCR. The methylation status of DLC-1 was analyzed by methylation-specific polymerase chain reaction (MSP). Furthermore, we determined the prognostic importance of DLC-1 methylation status in PDA patients. Our results showed that the expression level of DLC-1 mRNA in PDA tissues was lower than that in non-cancerous tissues. The rate of DLC-1 promoter methylation was significantly higher in PDA tissues than in adjacent non-cancerous tissues (p
- Published
- 2013
18. Identification of a HoxA10 activation domain necessary for transcription of the gene encoding beta3 integrin during myeloid differentiation
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Yu Feng Lu, Wei Zhou, Ling Bei, Elizabeth Horvath, Elizabeth A. Eklund, and Susan L. Bellis
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Myeloid ,Transcription, Genetic ,Response element ,Integrin ,Bone Marrow Cells ,Electrophoretic Mobility Shift Assay ,Biology ,Biochemistry ,Polymerase Chain Reaction ,Mice ,Transcription (biology) ,medicine ,Cell Adhesion ,Animals ,Humans ,Promoter Regions, Genetic ,Molecular Biology ,STAT4 ,Transcription factor ,Cells, Cultured ,DNA Primers ,Homeodomain Proteins ,Base Sequence ,Integrin beta3 ,Cell Differentiation ,Cell Biology ,TCF4 ,Molecular biology ,Fibronectins ,medicine.anatomical_structure ,Homeobox A10 Proteins ,biology.protein ,Homeobox ,Dimerization - Abstract
Transcription of the ITGB3 gene, which encodes beta3 integrin, increases during myeloid differentiation. alphavbeta3 integrin mediates adhesion to fibronectin or vitronectin and regulates various aspects of the inflammatory response in mature phagocytes. In these studies, we found that the homeodomain transcription factor HoxA10 interacted with a specific ITGB3 cis element and activated transcription of this gene during myeloid differentiation. We also found that increased fibronectin adhesion in differentiating myeloid cells was dependent upon this HoxA10-induced increase in beta3 integrin expression. We determined that activation of ITGB3 transcription required a HoxA10 domain that was not identical to the "hexapeptide" that mediates interaction of Hox and Pbx proteins. This activation domain was also not identical to a previously identified HoxA10 repression domain that mediates interaction with transcriptional co-repressors. Instead, this HoxA10 activation domain had homology to "PQ" protein-protein interaction domains that have been described previously in other transcription factors. Consistent with this, we found that the HoxA10 PQ-like domain recruited the CREB-binding protein (CBP) to the ITGB3 promoter. This was associated with an increase in local histone acetylation in vivo. In immature myeloid cells, we previously determined that HoxA10 repressed transcription of the CYBB and NCF2 genes, which encode the phagocyte oxidase proteins gp91(PHOX) and p67(PHOX), respectively. Therefore, our studies indicated that HoxA10 either activates or represses gene transcription at various points during myelopoiesis. Our studies also suggested that HoxA10 is a bifunctional protein that is involved in dynamic regulation of multiple aspects of phagocyte phenotype and function.
- Published
- 2007
19. Enhance synchronizability via age-based coupling
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Ming Zhao, Tao Zhou, Bing-Hong Wang, and Yu-Feng Lu
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Pure mathematics ,Statistical Mechanics (cond-mat.stat-mech) ,Coupling matrix ,Pattern formation ,FOS: Physical sciences ,Disordered Systems and Neural Networks (cond-mat.dis-nn) ,Condensed Matter - Disordered Systems and Neural Networks ,Coupling (probability) ,Synchronization ,Nonlinear dynamical systems ,Control theory ,Limit (mathematics) ,Condensed Matter - Statistical Mechanics ,Eigenvalues and eigenvectors ,Free parameter ,Mathematics - Abstract
In this brief report, we study the synchronization of growing scale-free networks. An asymmetrical age-based coupling method is proposed with only one free parameter $\alpha$. Although the coupling matrix is asymmetric, our coupling method could guarantee that all the eigenvalues are non-negative reals. The eigneratio R will approach to 1 in the large limit of $\alpha$., Comment: 3 pages, 1 figure
- Published
- 2007
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20. HoxA10 represses transcription of the gene encoding p67phox in phagocytic cells
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Yu Feng Lu, Stephan Lindsey, Chunliu Zhu, and Elizabeth A. Eklund
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Immunology ,Response element ,Down-Regulation ,chemistry.chemical_compound ,Mice ,Transcription (biology) ,Consensus Sequence ,Immunology and Allergy ,Animals ,Humans ,Myeloid Cells ,CYBB ,Phosphorylation ,Promoter Regions, Genetic ,Transcription factor ,Psychological repression ,Cells, Cultured ,Homeodomain Proteins ,Mice, Inbred BALB C ,Phagocytes ,biology ,Base Sequence ,Tyrosine phosphorylation ,U937 Cells ,Phosphoproteins ,Molecular biology ,DNA-Binding Proteins ,Repressor Proteins ,Histone ,Homeobox A10 Proteins ,chemistry ,Gene Expression Regulation ,biology.protein ,Tyrosine ,Histone deacetylase activity - Abstract
p67phox and gp91phox are components of the phagocyte-specific respiratory burst oxidase that are encoded by the NCF2 and CYBB genes, respectively. These genes are transcribed exclusively in myeloid cells that have differentiated beyond the promyelocyte stage. In mature phagocytes, NCF2 and CYBB transcription continues until cell death and further increases in response to IFN-γ and other inflammatory mediators. Because p67phox and gp91phox expression profiles are similar, we hypothesize that common transcription factors interact with homologous cis elements in the CYBB and NCF2 genes to coordinate transcription. Previously, we identified a negative CYBB promoter cis element that is repressed by the homeodomain transcription factor HoxA10. We found that transcriptional repression requires HoxA10-dependent recruitment of histone deacetylase activity to the CYBB cis element. In response to IFN-γ, phosphorylation of two tyrosine residues in the HoxA10 homeodomain decreases binding to CYBB promoter, thereby abrogating HoxA10-mediated repression. In the current studies, we investigate the possibility that HoxA10 similarly represses NCF2 transcription. We identify a sequence in the NCF2 promoter that is homologous to the HoxA10-binding CYBB cis element. We find that this NCF2 promoter sequence functions as a negative cis element that is repressed by HoxA10 in a tyrosine phosphorylation and histone deacetylase-dependent manner. Our results suggest that cytokine-stimulated pathways regulate HoxA10-mediated repression of the CYBB and NCF2 genes in differentiating myeloid cells and in mature phagocytes during the inflammatory response. Because p67phox and gp91phox are rate-limiting components for respiratory burst activity, our studies may identify rational therapeutic targets to modulate free radical generation in pathological conditions.
- Published
- 2005
21. HOXA9 activates transcription of the gene encoding gp91Phox during myeloid differentiation
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Ling Bei, Yu Feng Lu, and Elizabeth A. Eklund
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Myeloid ,Transcription, Genetic ,Biochemistry ,Polymerase Chain Reaction ,chemistry.chemical_compound ,Transcription (biology) ,Genes, Reporter ,Myeloid Cells ,Phosphorylation ,Myeloid Ecotropic Viral Integration Site 1 Protein ,Promoter Regions, Genetic ,Membrane Glycoproteins ,Pre-B-Cell Leukemia Transcription Factor 1 ,Gene Expression Regulation, Developmental ,Cell Differentiation ,U937 Cells ,Chromatin ,Neoplasm Proteins ,DNA-Binding Proteins ,medicine.anatomical_structure ,NADPH Oxidase 2 ,Myelopoiesis ,Plasmids ,Chloramphenicol O-Acetyltransferase ,DNA, Complementary ,Recombinant Fusion Proteins ,Blotting, Western ,Biology ,Transfection ,Phagocytosis ,Cell Line, Tumor ,Proto-Oncogene Proteins ,medicine ,Humans ,Immunoprecipitation ,CYBB ,Molecular Biology ,Gene ,Transcription factor ,Homeodomain Proteins ,Models, Genetic ,NADPH Oxidases ,Tyrosine phosphorylation ,Cell Biology ,Molecular biology ,Protein Structure, Tertiary ,Nuclear Pore Complex Proteins ,Homeobox A10 Proteins ,chemistry ,Gene Expression Regulation ,Mutagenesis ,Protein Biosynthesis ,Tyrosine - Abstract
The CYBB gene encodes gp91Phox; a component of the phagocyte respiratory burst oxidase. CYBB transcription is restricted to myeloid cells differentiated beyond the promyelocyte stage. In undifferentiated myeloid cells, the homeodomain (HD) transcription factor HoxA10 represses CYBB transcription via a cis element in the proximal promoter. During myelopoiesis, phosphorylation of conserved tyrosine residues in the HD decreases HoxA10 binding to this CYBB cis element. In the current studies, we found HoxA9 activates CYBB transcription in differentiated myeloid cells via the same cis element. We find HoxA9-mediated CYBB-transcription requires Pbx1 but is inhibited by Meis1. Additionally, phosphorylation of the conserved HD tyrosines increases HoxA9 binding to the CYBB promoter. The HOXA9 gene is involved in leukemia-associated translocations with the gene encoding Nup98, a nucleopore protein. We find expression of a Nup98-hoxA9 fusion protein blocks HoxA9-induced CYBB transcription in differentiating myeloid cells. In comparison to HoxA9, Nup98-hoxA9 has greater binding affinity for the CYBB cis element, but binding is not altered by HD tyrosine phosphorylation. Therefore, these studies identify CYBB as a common target gene repressed by HoxA10 and activated by HoxA9. These studies also suggest overexpression of Meis1 or Nup98-hoxA9 represses myeloid-specific gene transcription, thereby contributing to differentiation block in leukemogenesis.
- Published
- 2005
22. The interferon consensus sequence-binding protein activates transcription of the gene encoding neurofibromin 1
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Yu Feng Lu, Elizabeth A. Eklund, Gurveen Saberwal, Leonidas C. Platanias, and Chunliu Zhu
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Myeloid ,Transcription, Genetic ,Oligonucleotides ,Biochemistry ,Mice ,Genes, Reporter ,Cloning, Molecular ,Phosphorylation ,Promoter Regions, Genetic ,Cells, Cultured ,Mice, Knockout ,Mitogen-Activated Protein Kinase 3 ,Neurofibromin 1 ,Reverse Transcriptase Polymerase Chain Reaction ,Transfection ,U937 Cells ,Haematopoiesis ,medicine.anatomical_structure ,Interferon Regulatory Factors ,Cytokines ,Myelopoiesis ,Plasmids ,congenital, hereditary, and neonatal diseases and abnormalities ,Chromatin Immunoprecipitation ,DNA, Complementary ,Blotting, Western ,Bone Marrow Cells ,Biology ,medicine ,Animals ,Humans ,Immunoprecipitation ,Molecular Biology ,Cell Proliferation ,Cell Nucleus ,Dose-Response Relationship, Drug ,Macrophage Colony-Stimulating Factor ,Granulocyte-Macrophage Colony-Stimulating Factor ,Cell Biology ,nervous system diseases ,Protein Structure, Tertiary ,Repressor Proteins ,Retroviridae ,Cancer research ,biology.protein ,ras Proteins ,RNA ,IRF8 ,Chromatin immunoprecipitation ,Interferon regulatory factors - Abstract
Deficiency of the interferon consensus sequence-binding protein (ICSBP) is associated with increased myeloid cell proliferation in response to hematopoietic cytokines. However, previously identified ICSBP target genes do not indicate a mechanism for this "cytokine hypersensitivity." In these studies, we identify the gene encoding neurofibromin 1 (Nf1) as an ICSBP target gene, by chromatin immunoprecipitation. Additionally, we find decreased Nf1 expression in bone marrow-derived myeloid cells from ICSBP-/- mice. Since Nf1 deficiency is also associated with cytokine hypersensitivity, our results suggested that NF1 is a functionally significant ICSBP target gene. Consistent with this, we find that the hypersensitivity of ICSBP-/- myeloid cells to granulocyte monocyte colony-stimulating factor (GM-CSF) is reversed by expression of the Nf1 GAP-related domain. We also find that treatment of ICSBP-deficient myeloid cells with monocyte colony-stimulating factor (M-CSF) results in sustained Ras activation, ERK phosphorylation, and proliferation associated with impaired Nf1 expression. These M-CSF effects are reversed by ICSBP expression in ICSBP-/- cells. Consistent with this, we find that ICSBP activates the NF1 promoter in myeloid cell line transfectants and identify an ICSBP-binding NF1 cis element. Therefore, the absence of ICSBP leads to Nf1 deficiency, impairing down-regulation of Ras activation by GM-CSF or M-CSF. These results suggest that one mechanism of increased myeloid proliferation, in ICSBP-deficient cells, is decreased NF1 gene transcription. This novel ICSBP function provides insight into regulation of myelopoiesis under normal conditions and in myeloproliferative disorders.
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- 2004
23. Effect of Da-Huang on intestinal motility failure in rats with severe acute pancreatitis
- Author
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Tie-Long Wu, Liu Zongliang, Zhao-Shen Li, Yan-Min Wu, Yu-Zheng Xue, Yu-Feng Lu, Ying-Yue Sheng, and Xian-Ming Yu
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medicine.medical_specialty ,business.industry ,Internal medicine ,General surgery ,medicine ,Acute pancreatitis ,medicine.disease ,business ,Gastroenterology ,Intestinal motility - Published
- 2013
24. HoxA10 Represses Transcription of Multiple Genes Encoding Respiratory Burst Oxidase Proteins in Undifferentiated Myeloid Cells
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Stephan Lindsey, Yu Feng Lu, and Elizabeth A. Eklund
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Regulation of gene expression ,Myeloid ,Immunology ,Myeloid leukemia ,Tyrosine phosphorylation ,Cell Biology ,Hematology ,Biology ,Biochemistry ,Molecular biology ,chemistry.chemical_compound ,medicine.anatomical_structure ,chemistry ,Gene expression ,medicine ,Myelopoiesis ,CYBB ,Transcription factor - Abstract
HoxA10 is a homeodomain (HD) transcription factor which is maximally expressed in committed myeloid progenitors and is overexpressed in acute myeloid leukemia (AML). Consistent with this, forced overexpression of HoxA10 in murine bone marrow leads to AML. Our studies identify a mechanism by which HoxA10-overexpression blocks differentiation, contributing to leukemogenesis. Previously, we found that HoxA10 represses transcription of the CYBB gene. This gene encodes the gp91phox component of the phagocyte respiratory burst oxidase and is actively transcribed in myeloid cells differentiated beyond the promyelocyte stage. CYBB transcription continues until cell death and is further increased in mature phagocytes by inflammatory mediators such as IFNg and LPS. In undifferentiated myeloid cells, HoxA10 represses CYBB transcription via a proximal promoter cis element with homology to the consensus sequence for HoxA10 DNA-binding as a heterodimer with Pbx1 (also a HD protein). However, we found that HoxA10 repression of CYBB transcription is Pbx1-independent and HDAC2-dependant. During cytokine induced differentiation, phosphorylation of two HoxA10 HD tyrosine residues decreases DNA-binding affinity and transcriptional repression. In the current studies, we investigate the impact of HoxA10 on transcription of the NCF2 gene. This gene, which encodes the p67phox phagocyte oxidase component, is transcribed concurrently with the CYBB gene during myelopoiesis and the inflammatory response. The NCF2 promoter also includes a sequence homologous to the HoxA10/Pbx1 DNA-binding consensus. In the current studies, we determine that HoxA10 functionally represses NCF2 transcription in undifferentiated myeloid cells in a Pbx1-independent, HDAC2-dependant manner. Additionally, we determine that NCF2-transcriptional repression by HoxA10 is abolished by phosphorylation of HD tyrosine residues in response to differentiating cytokines. In these studies, we also investigate the impact of IFNg-treatment of monocytes on HoxA10 phosphorylation and gp91phox and p67phox expression. We find that treatment of monocytes with this inflammatory mediator results in hyper tyrosine phosphorylation of HoxA10, which is necessary for IFNg-induced gp91phox and p67phox expression in these cells. These experiments suggest that HoxA10 contributes to differentiation block in AML by repressing transcription of genes that confer the mature myeloid phenotype. HoxA10 tyrosine phosphorylation abrogates transcriptional repression and may provide a molecular target for differentiation induction in AML. Additionally, HoxA10 hyper phosphorylation during the inflammatory response further increases oxidase gene expression. This represents the first demonstration that functions of HoxA10 contribute to gene regulation in mature phagocytes, contributing to the system of host defense.
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- 2005
25. HoxA9 Activates Transcription of the Gene Encoding Gp91phox, a Respiratory Burst Oxidase Protein, during Myeloid Differentiation
- Author
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Elizabeth A. Eklund, Ling Bei, and Yu Feng Lu
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Immunology ,Repressor ,Tyrosine phosphorylation ,Cell Biology ,Hematology ,Biology ,Biochemistry ,Molecular biology ,chemistry.chemical_compound ,chemistry ,Transcription (biology) ,Consensus sequence ,Phosphorylation ,Histone deacetylase ,CYBB ,Tyrosine - Abstract
Transcription of the CYBB gene, which encodes the respiratory burst oxidase protein, gp91phox, is restricted to phagocytic cells, differentiated beyond the promyelocyte stage. Regulation of CYBB transcription involves several repressor cis elements in the promoter. These repressor elements are homologous to the derived consensus sequence for DNA-binding of HoxA10 as a hetero-dimer with Pbx1a. The HoxA10/Pbx1 complex recruits histone deacetylase 2 and represses CYBB transcription in undifferentiated cells. During myeloid differentiation, HoxA10 is tyrosine phosphorylated, which decreases DNA-binding affinity for the CYBB repressor element. In our previous investigations, we found this decreased binding affinity requires phosphorylation of two tyrosine residues in the DNA-binding homeodomain. These residues are highly conserved with other HoxA proteins. However, we also found decreased DNA-binding requires interaction of these homeodomain tyrosines with a non-conserved domain, amino terminal in HoxA10. In previous investigations, we determined these CYBB repressor cis elements function as positive cis elements in differentiated myeloid cells, and interact with an unidentified protein complex. In these studies, we investigate the proteins involved in transcriptional activation of the CYBB gene, via these promoter sequences. We find this cis element is activated by HoxA9 and Pbx1a, in differentiating myeloid cells. Consistent with this, we find increased binding of HoxA9 to this CYBB cis element, during myeloid differentiation, in vitro and in vivo. Consistent with our results with HoxA10, we find HoxA9 is tyrosine phosphorylated during myeloid differentiation. However, in contrast to HoxA10, we find tyrosine phosphorylation of the conserved residues in the HoxA9 DNA-binding homeodomain increases binding to the CYBB cis element. Therefore, we conclude HoxA10 and HoxA9 have opposing functions, for myeloid specific gene transcription, during differentiation. We also find these functions are regulated by post translational modification of conserved tyrosine residues in the homeodomain regions of these proteins. Additionally, our results suggest differences in the effect of phosphorylation of these residues on DNA-binding is likely due to interaction with non-conserved domains in HoxA9 and HoxA10.
- Published
- 2004
26. Stabilization with Internal Loop for Infinite-Dimensional Discrete Time-Varying Systems.
- Author
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Nai-feng Gan, Yu-feng LU, and Ting Gong
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- *
CONTROLLER area network (Computer network) , *COST , *MATHEMATICAL models of economics , *CONTINGENT fees , *COST accounting , *MATHEMATICAL models - Abstract
The concepts of stabilization with internal loop are analyzed for well-posed transfer functions. We obtain some sufficient and necessary conditions such that a stabilizing controller with internal loop stabilizes plant L. We also analyze two special subclasses of stabilizing controllers with internal loop, called canonical and dual canonical controllers, and show that all stabilizing controllers can be parameterized by a doubly coprime factorization of the original transfer function. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
27. Multivalent mRNA Vaccine Elicits Broad Protection against SARS-CoV-2 Variants of Concern
- Author
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Monika Kumari, Kang-Hao Liang, Shih-Chieh Su, Hsiu-Ting Lin, Yu-Feng Lu, Ming-Jane Wu, Wan-Yu Chen, and Han-Chung Wu
- Subjects
SARS-CoV-2 ,variants of concern ,multivalent mRNA vaccines ,vaccine efficacy ,Medicine - Abstract
SARS-CoV-2 new waves are primarily caused by changes to the spike protein (S), which can substantially decrease the efficacy of vaccines. Therefore, we tested several multivalent mRNA-LNP vaccines, targeting the full-length S proteins of different variants, and identified an optimal combination for protection against VOCs in BALB/c mice. The tested formulations included trivalent (WT + BA.5 + XBB.1.5), pentavalent (WT + BA.5 + XBB.1.5 + BQ.1.1 + CH.1.1), and octavalent (WT + BA.5 + XBB.1.5 + BQ.1.1 + CH.1.1 + Alpha + Delta + BA.2) vaccines. Among these multivalent vaccines, the pentavalent vaccine showed superior protection for almost all tested variants. Despite this, each multivalent vaccine elicited greater broad-spectrum neutralizing antibodies than the previously evaluated bivalent vaccine (WT + BA.5). Subsequently, we redesigned the multivalent vaccine to efficiently generate neutralizing antibodies against recent VOCs, including EG.5.1. Immunization with the redesigned pentavalent vaccine (WT + EG.5.1 + XBB.1.16 + Delta + BA.5) showed moderate levels of protection against recent Omicron VOCs. Results suggest that the neutralization activity of multivalent vaccines is better than those of the tested bivalent vaccines against WT + BA.5 and WT + EG.5.1. Moreover, the pentavalent vaccine we developed may be highly useful for neutralizing new Omicron VOCs.
- Published
- 2024
- Full Text
- View/download PDF
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