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Knowledge of the quantitative importance of the moisture transport pathways and mutual moisture exchange of the source regions of the Yangtze (SYZR) and Yellow (SYR) rivers' basins, the adjacent origins of China's two longest rivers, can provide insights into the regional atmospheric branch of the hydrological cycle over the source regions. The method with the Hybrid Single-Particle Lagrangian Integrated Trajectory (HYSPLIT) model and a Lagrangian moisture source diagnostic to identify the major moisture transport pathways quantifies their importance to two types of daily precipitation events—daily precipitation more than 10 mm (PM) events and daily precipitation less than 10 mm (PL) events—for the two rivers' regions during the summer (June–August, 1986–2015) and finds the characteristics of mutual moisture exchange. The results indicated that both the Bay of Bengal group pathway and the northwest China group pathway play significant roles in PM and PL events over the SYZR, contributing 41.87% and 39.12% to PM events and 41.33% and 33.16% to PL events, respectively. The SYR has five main moisture path groups; the Bay of Bengal group pathway, the northwest China group pathway, and the southeast China group pathway play significant roles in PM and PL events over the SYR, contributing 32.34%, 23.28%, and 34.36% to PM events and 34.84%, 36.18%, and 19.83% to PL events, respectively. The volume of moisture passing from the SYZR to the SYR is approximately 60 times that of the reverse, constituting about 6.9% of the total moisture released in SYR precipitation. It is worth noting that the moisture release was concentrated in the nearer west group pathway, and the main moisture uptake locations were beyond the source region of the two rivers (remote sources) in the PM events. The aggregate moisture release high-frequency moisture transport path groups are found in the southeastern parts of Zhiduo County and the southeast of Zaduo County. [ABSTRACT FROM AUTHOR]

Bacterial and microeukaryotic community compositions and their assembly processes have remained challenging and remained unclear in lake ecosystems on the Qinghai-Tibet Plateau (QTP). We revealed the diversity and community compositions, driving factors, ecological assembly processes, and co-occurrence networks of bacterial and microeukaryotic communities in water bodies of the eight lake ecosystems across the Eastern QTP. The results demonstrated that the predominant bacteria in most samples were Proteobacteria, with an average relative abundance of 41.78%, whereas the most abundant of microeukaryotes differed among the sample sites. The redundancy analysis revealed that latitude and pH were the most important driving factors in shaping the bacterial and microeukaryotic community compositions. Homogeneous selection (56.40%) was the dominant process in assembling the bacterial communities, whereas dispersal limitation (67.24%) was the major process in governing the microeukaryotic communities. Furthermore, dissolved organic carbon and salinity were the major factors mediating the balance of deterministic and stochastic assembly processes in the bacterial and microeukaryotic communities. Both the bacterial and microeukaryotic community co-occurrence networks exhibited topological features of modularity and non-random topological features. The results offer insights into the mechanisms underpinning bacterial and microeukaryotic diversities and communities in the lake ecosystems on the QTP. [ABSTRACT FROM AUTHOR]

In the context of climate change, precipitation and runoff in the arid inland basins of northwest China have undergone significant changes. The Qaidam Basin (QB) is a typical highland arid inland area. Understanding the spatial and temporal variations in surface water and groundwater chemistry and isotopes, as well as their causes, is crucial for future water resource management and ecological protection. Samples of river, lake, and groundwater, as well as others, were collected and tested in five typical watersheds in the summer and winter. The hydrochemistry and isotopic spatiotemporal differences in various water bodies were studied using the significant difference method, water vapor flux models, hydrochemistry, isotopes, and other methods for cause analyses. The results indicate the following: (1) There are differences in hydrochemistry between the southern and northern basins because the southern basin is more influenced by the dissolution of salt rocks and evaporation, whereas the northern basin is mainly affected by carbonate weathering. (2) The enrichment of δD and δ18O in the northern basin gradually increases from west to east, while in the southern basin, it is the opposite. This is because the southern basin receives a larger contribution of water vapor from the mid-latitude westerlies, while the northern basin primarily relies on local evaporation as its water vapor source. (3) Significant differences are observed in the total dissolved solids (TDS) and hydrochemical types of river water and groundwater between the summer and winter due to higher rates of rock weathering and evaporation in the summer. (4) The more pronounced seasonal differences in hydrogen and oxygen stable isotopes in the southern basin are due to higher rates of internal water vapor circulation in the summer. (5) The similarity in characteristics between river water and groundwater is the result of strong exchanges between river water and groundwater from piedmonts to terminals. The spatiotemporal heterogeneity of terminal lakes is attributed to the accumulation of salts and groundwater replenishment from other sources. [ABSTRACT FROM AUTHOR]

Deciphering the genetic architecture underlying polygenic traits in perennial species can inform molecular marker-assisted breeding. Recent advances in high-throughput sequencing have enabled strategies that integrate linkage-linkage disequilibrium ( LD) mapping in Populus., We used an integrated method of quantitative trait locus ( QTL) dissection with a high-resolution linkage map and multi-gene association mapping to decipher the nature of genetic architecture (additive, dominant, and epistatic effects) of potential QTLs for growth traits in a Populus linkage population (1200 progeny) and a natural population (435 individuals)., Seventeen QTLs for tree height, diameter at breast height, and stem volume mapped to 11 linkage groups (logarithm of odds ( LOD) ≥ 2.5), and explained 2.7-18.5% of the phenotypic variance. After comparative mapping and transcriptome analysis, 187 expressed genes (10 046 common single nucleotide polymorphisms ( SNPs)) were selected from the segmental homology regions ( SHRs) of 13 QTLs. Using multi-gene association models, we observed 202 significant SNPs in 63 promising genes from 10 QTLs ( P ≤ 0.0001; FDR ≤ 0.10) that exhibited reproducible associations with additive/dominant effects, and further determined 11 top-ranked genes tightly linked to the QTLs. Epistasis analysis uncovered a uniquely interconnected gene-gene network for each trait., This study opens up opportunities to uncover the causal networks of interacting genes in plants using an integrated linkage- LD mapping approach. [ABSTRACT FROM AUTHOR]

Background/aims: Ubiquitination is widely involved in the progression of hepatocellular carcinoma (HCC) by regulating various cellular processes. However, systematic strategies for screening core ubiquitin-related genes, clarifying their functions and mechanisms, and ultimately developing potential therapeutics for patients with HCC are still lacking., Methods: Cox and LASSO regression analyses were performed to construct a ubiquitin-related gene prediction model for HCC. Loss- and gain-of-function studies, transcriptomic and metabolomics analysis were used to explore the function and mechanism of UBE2S on HCC cell glycolysis and growth., Results: Based on 1,423 ubiquitin-related genes, a four-gene signature was successfully constructed to evaluate the prognosis of patients with HCC. UBE2S was identified in this signature with the potential to predict the survival of patients with HCC. E2F2 transcriptionally upregulated UBE2S expression by directly binding to its promoter. UBE2S positively regulated glycolysis in a HIF-1α-dependent manner, thus promoting the proliferation of HCC cells. Mechanistically, UBE2S enhanced K11-linkage polyubiquitination at lysine residues 171 and 196 of VHL independent of E3 ligase, thereby indirectly stabilizing HIF-1α protein levels by mediating the degradation of VHL by the proteasome. In particular, the combination of cephalomannine, a small molecule compound that inhibits the expression of UBE2S, and PX-478, an inhibitor of HIF-1α, significantly improved the anti-tumor efficacy., Conclusion: UBE2S is identified as a key biomarker in HCC among the thousands of ubiquitin-related genes and promotes glycolysis by E3 enzyme-independent ubiquitination, thus serving as a therapeutic target for the treatment of HCC.

Background: S-adenosyl-l-homocysteine hydrolase (SAHH) is the only eukaryotic enzyme capable of S-adenosyl-l-homocysteine (SAH) catabolism for the maintenance of cellular transmethylation potential. Recently, biochemical and genetic studies in herbaceous species have obtained important discoveries in the function of SAHH, and an extensive characterization of SAHH family in even one tree species is essential, but currently lacking., Results: Here, we first identified the SAHH family from Populus tomentosa using molecular cloning method. Phylogenetic analyses of 28 SAHH proteins from dicotyledons, monocotyledons, and lower plants revealed that the sequences formed two monophyletic groups: the PtrSAHHA with PtoSAHHA and PtrSAHHB with PtoSAHHB. Examination of tissue-specific expression profiles of the PtoSAHH family revealed similar expression patterns; high levels of expression in xylem were found. Nucleotide diversity and linkage disequilibrium (LD) in the PtoSAHH family, sampled from P. tomentosa natural distribution, revealed that PtoSAHH harbors high single-nucleotide polymorphism (SNP) diversity (π = 0.01059 ± 0.00122 and 0.00930 ± 0.00079,respectively) and low LD (r2 > 0.1, within 800 bp and 2,200 bp, respectively). Using an LD-linkage analysis approach, two noncoding SNPs (PtoSAHHB_1065 and PtoSAHHA_2203) and the corresponding haplotypes were found to significantly associate with α-cellulose content, and a nonsynonymous SNP (PtoSAHHB_410) within the SAHH signature motifs showed significant association with fiber length, with an average of 3.14% of the phenotypic variance explained., Conclusions: The present study demonstrates that PtoSAHHs were split off prior to the divergence of interspecies in Populus, and SAHHs may play a key role promoting transmethylation reactions in the secondary cell walls biosynthesis in trees. Hence, our findings provide insights into SAHH function and evolution in woody species and also offer a theoretical basis for marker-aided selection breeding to improve the wood quality of Populus.