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Abstract The chloroplast genomes of wild loquat can help to determine their place in the history of evolution. Here, we sequenced and assembled two novel wild loquat’s chloroplast genomes, one is Eriobotrya elliptica, and the other is an unidentified wild loquat, which we named “YN-1”. Their sizes are 159,471 bp and 159,399 bp, respectively. We also assembled a cultivated loquat named ‘JFZ’, its chloroplast genome size is 159,156 bp. A comparative study was conducted with six distinct species of loquats, including five wild loquats and one cultivated loquat. The results showed that both E. elliptica and “YN-1” have 127 genes, one gene more than E. fragrans, which is psbK. Regions trnF-GAA-ndhJ, petG-trnP-UGG, and rpl32-trnL-UAG were found to exhibit high variability. It was discovered that there was a positive selection on rpl22 and rps12. RNA editing analysis found several chilling stress-specific RNA editing sites, especially in rpl2 gene. Phylogenetic analysis results showed that “YN-1” is closely related to E. elliptica, E. obovata and E. henryi.

The chloroplast genomes of wild loquat can help to determine their place in the history of evolution. Here, we sequenced and assembled two novel wild loquat's chloroplast genomes, one is Eriobotrya elliptica, and the other is an unidentified wild loquat, which we named "YN-1". Their sizes are 159,471 bp and 159,399 bp, respectively. We also assembled a cultivated loquat named 'JFZ', its chloroplast genome size is 159,156 bp. A comparative study was conducted with six distinct species of loquats, including five wild loquats and one cultivated loquat. The results showed that both E. elliptica and "YN-1" have 127 genes, one gene more than E. fragrans, which is psbK. Regions trnF-GAA-ndhJ, petG-trnP-UGG, and rpl32-trnL-UAG were found to exhibit high variability. It was discovered that there was a positive selection on rpl22 and rps12. RNA editing analysis found several chilling stress-specific RNA editing sites, especially in rpl2 gene. Phylogenetic analysis results showed that "YN-1" is closely related to E. elliptica, E. obovata and E. henryi. [ABSTRACT FROM AUTHOR]

Abstract Background The process of crop domestication has long been a major area of research to gain insights into the history of human civilization and to understand the process of evolution. Loquat (Eriobotrya japonica Lindl.) is one of the typical subtropical fruit trees, which was domesticated in China at least 2000 years ago. In the present study, we re-sequenced the genome of nine wild loquat accessions collected from wide geographical range and 10 representative cultivated loquat cultivars by using RAD-tag tacit to exploit the molecular footprints of domestication. Results We obtained 26.4 Gb clean sequencing data from 19 loquat accessions, with an average of 32.64 M reads per genotype. We identified more than 80,000 SNPs distributed throughout the loquat genome. The SNP density and numbers were slightly higher in the wild loquat populations than that in the cultivated populations. All cultivars were clustered together by structure, phylogenetic and PCA analyses. Conclusion The modern loquat cultivars have experienced a non-significant genetic bottleneck during domestication, and originated from a single domesticated event. Moreover, our study revealed that Hubei province of China is probably the origin center of cultivated loquat.

Background Interspecific hybridization has long been recognized as a pivotal process in plant evolution and speciation. It occurs fairly common in the genera of the subtribe Pyrinae. In Eriobotrya, a small tree genus of Pyrinae, E. prinoides var. daduheensis has been recognized as either a variety of E. prinoides, a natural hybrid between E. prinoides and E. japonica, or a variety of E. japonica. However, to date, there has been no convincing evidence on its status. Results Four nuclear genes and two chloroplast regions were sequenced in 89 individuals of these three Eriobotrya taxa from two locations where they coexist. A few fixed nucleotide substitutions or gaps were found in each of the investigated nuclear and chloroplast loci between E. japonica and E. prinoides. Of the 35 individuals of E. prinoides var. daduheensis, 33 showed nucleotide additivity of E. japonica and E. prinoides in at least one nuclear gene, and 10 of them harboured nucleotide additivity at all the four nuclear genes. Most haplotypes of E. prinoides var. daduheensis were also shared with those of E. japonica and E. prinoides. In the two chloroplast regions, 28 and 7 individuals were identical with E. japonica and E. prinoides, respectively. Conclusions Our study provides compelling evidence for a hybrid status for E. prinoides var. daduheensis. Most hybrid individuals are later-generation hybrids. Both E. japonica and E. prinoides can serve as female parent. Differential adaptation might maintain the species boundary of E. prinoides and E. japonica in the face of hybridization and potential introgression. [ABSTRACT FROM AUTHOR]

One of the limitations of Uapaca kirkiana on-farm cultivation is the long juvenile phase to reach a stable fruiting stage. Marcots and grafts have been identified as feasible and reliable propagation methods for precocious fruiting, but the effects of different propagule types on tree growth and fruit yield have not been evaluated. There is limited knowledge on development and growth forms for trees derived from different propagules. Grafts and marcots were compared with saplings to assess the variability in 1) field growth and fruiting of U. kirkiana; and 2) dry matter allocation pattern and tree development models among trees derived from different propagules. Tree development models were used to examine differences among trees from different propagules. The results show that number of branches and fruit load significantly differed between vegetative propagules and saplings, whereas tree height, root collar diameter, crown spread, and fruit size and weight were similar 8 years after establishment. The results suggest differences in intraspecific scaling relationships between height and diameter among propagule sources. Saplings showed a significantly better fit (r² = 0.891; P < 0.0001) to the scaling relationship than grafts (r² = 0.724; P = 0.002) and marcots (r² = 0.533; P = 0.018). After 3 years, marcots and grafts started producing fruits. Fruit load was greatest in marcots despite some fruit abortions; thus, marcots had greater fruit yield, early growth, and development and better dry matter allocation. [ABSTRACT FROM AUTHOR]

The full commercial potential of wild loquat [Uapaca kirkiana (Muell. Arg.)], a fruit that is widely used for food and income in parts of Africa, is restricted by its short shelf life and variability in postharvest quality. We have evaluated within and among tree variability in fruit size and color at harvest, and changes of color, soluble solids concentrations (SSC) and pulp deterioration during storage, of fruit harvested during the maturation period. The relationships between fruit shape, size, seed number and SSC of fruit harvested at the ripe stage of maturity was also assessed. Size and color of fruit within and among trees at harvest varied greatly within the same location on the same harvest date. The a* values (redness) were more variable than for other color attributes, reflecting a range of fruit colors from greenish to brown. During a 6 day storage period, fruit color lightness and yellowness decreased, while redness increased, and variation in color attributes decreased. Although fruit color intensified during storage, the SSC of fruit after ripening was linked more with fruit color at harvest, with mean concentrations ranging from 6.7% to 13.8% among trees. When fruit were harvested four weeks later and categorized by color at harvest, SSC varied from 11.8% in greenish-yellow fruit to 14.5% in browner fruit. Pulp deterioration of stored fruit harvested unripe was observed by 6 days. The SSC of fruit harvested when ripe was not significantly correlated with shape, size or seed number. These observations have important implications for germplasm selection and collection of U. kirkiana for domestication purposes. Timing of harvest and/or postharvest sorting of fruit is likely to reduce variability in SSC during the postharvest period. [ABSTRACT FROM AUTHOR]