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Highlights • Compression index, from drained triaxial compression, is independent of SOC. • Reported effects of SOC on compression may be due to soil hydraulic effect. • Void ratio at any effective stress is strongly correlated with SOC. • The plastic limit test is a useful test to compare of soil physical behaviour., We investigated the effect of soil organic carbon (SOC) on the consolidation behaviour of soil from two long term field experiments at Rothamsted; the Broadbalk Wheat Experiment and Hoosfield Spring Barley. These experiments are located on soil with similar particle size distributions, and include treatments with SOC contents ranging from approximately 1–3.5 g/100 g. Soils taken from plots with contrasting SOC contents were compressed and deformed in a triaxial cell and the normal consolidation and critical state lines were determined. We found that the compression index was independent of SOC, but the void ratio at any given effective stress was highly correlated with organic carbon content. By comparison with uniaxial compression data, the apparent influence of SOC on the compression index is likely to be due to its effect on soil hydraulic properties rather than any intrinsic effects of strength. The plastic limit test appears to be a useful and simple test to allow direct comparison of soil physical behaviour and expected soil density.

Efficient use of nitrogen (N) by plants and particularly crops, is of global importance. In agriculture, high crop yields and protein content depend upon extensive N-inputs, however fertilizer N is costly to the farmer, and overuse can be damaging to the environment. A critical component of optimised usage is efficient capture by crop root systems. This chapter focusses on principal mechanisms of uptake and factors influencing efficiency. Genetic variation in root architecture and in an array of transporters known to be involved in nitrogen capture is detailed. The impacts of abiotic stress factors such as soil structure are described. Finally prospects and opportunities for crop improvement are discussed.

Summary We explore the effect of microbial activity stimulated by root exudates on the penetrometer resistance of soil and its elastic modulus. This is important because it is a measure of the mechanical strength of soil and it correlates closely with the rate of elongation of roots. A sandy soil was incubated with a synthetic root exudate at different temperatures, for different lengths of time and with selective suppression of either fungi or bacteria. The shape of the temperature response of penetrometer resistance in soil incubated with synthetic exudate was typical of a poikilothermic temperature response. Both penetrometer resistance and small strain shear modulus had maximum values between 25 and 30°C. At temperatures of 20°C and less, there was little effect of incubation with synthetic root exudate on the small strain shear modulus, although penetrometer resistance did increase with temperature over this range (4–20°C). This suggests that in this temperature range the increase in penetrometer resistance was related to a greater resistance to plastic deformation. At higher temperatures (> 25°C) penetrometer resistance decreased. Analysis of the DNA sequence data showed that at 25°C the number of Streptomyces (Gram‐positive bacteria) increased, but selective suppression of either fungi or bacteria suggested that fungi have the greater role with respect to penetrometer resistance. Highlights Effect of microbial activity stimulated by synthetic root exudates on the mechanical properties.We compared penetrometer measurements and estimates of elastic modulus with microbial community.Penetrometer resistance of soil showed a poikilothermic temperature response.Penetrometer resistance might be affected more by fungi than bacteria.

In this study, we explored the effects of microbial activity on the evaporation of water from cores of a sandy soil under laboratory conditions. We applied treatments to stimulate microbial activity by adding different amounts of synthetic analogue root exudates. For comparison, we used soil samples without synthetic root exudates as control and samples treated with mercuric chloride to suppress microbial activity. Our results suggest that increasing microbial activity reduces the rate of evaporation from soil. Estimated diffusivities in soil with the largest amounts of added root exudates were one third of those estimated in samples where microbial activity was suppressed by adding mercuric chloride. We discuss the effect of our results with respect to water uptake by roots.

The velocities of shear waves Vs in two soils, a loamy sand and a sandy clay loam, were measured at various matric potentials and confining pressures. We used a combination of Haines apparatus, pressure plate apparatus and a Bishop and Wesley tri-axial cell to obtain a range of saturation and consolidation states. We proposed a single effective stress variable based on a modification to Bishop’s equation which could be used in a published empirical model (Santamarina et al., 2001) to relate shear wave velocity to soil physical conditions. Net stress required a nonlinear transformation. Matric potential was converted into suction stress with the function proposed by Khallili and Khabbaz (1998), thus requiring an estimate of the air entry potential. We found it was possible to fit Vs to void ratio, net stress and matric potential with a set of four parameters which were common to all soils at various states of saturation and consolidation. In addition to the data collected for this study we also used previously published data (Whalley et al., 2011). The utility of shear wave measurements to deduce soil physical properties is discussed.

RATIONALEThis study aimed (i) to determine the isotopic fractionation factors associated with N2O production and reduction during soil denitrification and (ii) to help specify the factors controlling the magnitude of the isotope effects. For the first time the isotope effects of denitrification were determined in an experiment under oxic atmosphere and using a novel approach where N2O production and reduction occurred simultaneously. METHODSSoil incubations were performed under a He/O-2 atmosphere and the denitrification product ratio [N2O/(N-2+N2O)] was determined by direct measurement of N-2 and N2O fluxes. N2O isotopocules were analyzed by mass spectrometry to determine O-18, N-15 and N-15 site preference within the linear N2O molecule (SP). An isotopic model was applied for the simultaneous determination of net isotope effects () of both N2O production and reduction, taking into account emissions from two distinct soil pools. RESULTSA clear relationship was observed between N-15 and O-18 isotope effects during N2O production and denitrification rates. For N2O reduction, diverse isotope effects were observed for the two distinct soil pools characterized by different product ratios. For moderate product ratios (from 0.1 to 1.0) the range of isotope effects given by previous studies was confirmed and refined, whereas for very low product ratios (below 0.1) the net isotope effects were much smaller. CONCLUSIONSThe fractionation factors associated with denitrification, determined under oxic incubation, are similar to the factors previously determined under anoxic conditions, hence potentially applicable for field studies. However, it was shown that the O-18/N-15 ratios, previously accepted as typical for N2O reduction processes (i.e., higher than 2), are not valid for all conditions. Copyright (c) 2014 John Wiley & Sons, Ltd.

The deterministic modelling of bio-hydrological processes in soil requires a void structure model that is explicitly dual-porous containing fully and separately characterized macroporosity and microporosity. It should also contain information that relates the positioning of microporosity relative to macroporosity. An example of such a process is the production of nitrous oxide, in which bacteria in microporous hot-spots' are supplied with nutrients and gases through a macroporous pathway. We present a precision void-structure model that satisfies these two criteria, namely explicit macroporosity and microporosity, and their positional relationship. To demonstrate the construction of the model, we describe the modelling of a single soil, namely Warren soil from Rothamsted Research's Woburn Experimental Farm in Bedfordshire, UK, although the modelling approach is applicable to a wide range of soils and other dual porous solids. The model is capable of fitting several fundamental properties of soil, namely water retention, aggregate size distribution, and porosity of the microporous and macroporous zones. It comprises a dendritic critical percolation path, around which are clustered the microporous regions. The saturated hydraulic conductivity of the dual-porous network is of the correct order of magnitude for a soil of the same density and texture as the Warren sample. Finally, we demonstrate how the preferential flow pathway in the resulting structure differs from the critical percolation pathway, and that only 4.6% by volume of the unclogged macroporosity contributes to the fluid flow through the structure.

In horticulture, the soil structure, moisture content and strength have profound effects on plant growth. When soils are regarded as porous media, sub-surface wave propagation can be indicative of the soil status. Such propagation can be initiated by sources of airborne sound through acoustic-to-seismic coupling. Measurements of the ratio of near-surface sound pressure to acoustically induced solid particle motion can be exploited to estimate the acoustic and elastic properties of soils. Traditional methods of monitoring seismic signals by use of buried geophones are invasive and may affect the soil samples of interest. This paper describes a non-invasive acoustic-seismic technique. A loudspeaker was used to generate airborne sound, and the reflected sound and the subsequent vibration of the soil surface were recorded by microphones and a laser Doppler vibrometer respectively. These data were used to estimate acoustic and elastic soil parameters through an optimisation process minimising the differences between the data and model predictions based on incorporation of a modified Biot theory in a Fast Field Program. Example results of laboratory and field measurements are reported.

To emerge from a germinated seed, the shoot has to be capable of reaching the soil surface, while continued root growth is required to gain access to water in drying seedbeds. This is illustrated in Figure 1 where the seed must first germinate rapidly, then have rapid initial downward growth, and finally have high potential for upward shoot growth in soil of increasing impedance (Figure 1). Once a seed has germinated, seedling growth depends on temperature, water potential, and the mechanical strength of the seedbed (Collis-George and Yoganathan, 1985a, b; Finch-Savage et al., 1998; Townend et al., 1996; Whalley et al., 1999, 2001). Root and shoot elongation rate decrease with water potential in vermiculite (Sharp et al., 1988), but as soil dries it also tends to become stronger and mechanical impedance rather than water stress can become limiting (Weaich et al., 1992). Understanding the impact of mechanical impedance on seedling emergence can be difficult...

X-ray sedimentation is potentially attractive for estimating the particle-size distribution of soil, but has been thought to overestimate clay fractions because of the iron they contain. We have examined X-ray sedimentation for estimating the particle-size distribution of fully dispersed and of aggregated clay. We obtained good agreement between the pipette and X-ray sedimentation methods using two different kaolinite samples with a small iron concentration. We also studied montmorillonite saturated with Li, Na, K, Mg or Ca to investigate possible effects of hindered settling. For the Ca montmorillonite, we obtained good agreement between X-ray sedimentation and the pipette method at concentrations up to 40 g l(-1). We also found that X-ray sedimentation could be used at concentrations less than those recommended by the manufacturer. Hindered settling was observed at concentrations > 20 g l(-1) for Li- and Na-saturated montmorillonite. Our data suggest that conducting experiments at different mass concentrations is a sensitive test to detect such problems. Finally we used a fractal model to investigate the possible errors that might result from the size dependence of aggregate density and show that the error caused by assuming a single value for particle density of solids is small.

© 2019 The Authors Plant, Cell & Environment Published by John Wiley & Sons Ltd Roots naturally exert axial and radial pressures during growth, which alter the structural arrangement of soil at the root–soil interface. However, empirical models suggest soil densification, which can have negative impacts on water and nutrient uptake, occurs at the immediate root surface with decreasing distance from the root. Here, we spatially map structural gradients in the soil surrounding roots using non-invasive imaging, to ascertain the role of root growth in early stage formation of soil structure. X-ray computed tomography provided a means not only to visualize a root system in situ and in 3-D but also to assess the precise root-induced alterations to soil structure close to, and at selected distances away from the root–soil interface. We spatially quantified the changes in soil structure generated by three common but contrasting plant species (pea, tomato, and wheat) under different soil texture and compaction treatments. Across the three plant types, significant increases in porosity at the immediate root surface were found in both clay loam and loamy sand soils and not soil densification, the currently assumed norm. Densification of the soil was recorded, at some distance away from the root, dependent on soil texture and plant type. There was a significant soil texture×bulk density×plant species interaction for the root convex hull, a measure of the extent to which root systems explore the soil, which suggested pea and wheat grew better in the clay soil when at a high bulk density, compared with tomato, which preferred lower bulk density soils. These results, only revealed by high resolution non-destructive imagery, show that although the root penetration mechanisms can lead to soil densification (which could have a negative impact on growth), the immediate root–soil interface is actually a zone of high porosity, which is very important for several key rhizosphere processes occurring at this scale including water and nutrient uptake and gaseous diffusion.

Soil systems are characterized by the spatial and temporal distribution of organic and mineral particles, water and air within a soil profile. Investigations into the complex interactions between soil constituents have greatly benefited from the advent of non-invasive techniques for structural analysis. In this paper we present a review of the application of one such technique, X-ray computed tomography (CT), for studies of undisturbed soil systems, focusing on research during the last 10years in particular. The ability to undertake three-dimensional imaging has provided valuable insights regarding the quantitative assessment of soil features, in a way previously unachievable because of the opaque nature of soil. A dynamic approach to the evaluation of soil pore networks, hydro-physical characteristics and soil faunal behaviour has seen numerous scanning methodologies employed and a diverse range of image analysis protocols used. This has shed light on functional processes across multiple scales whilst also bringing its own challenges. In particular, much work has been carried out to link a soil's porous architecture with hydraulic function, although new technical improvements allowing the characterization of organic matter and the influence of soil biota on structural development are showing great promise. Here we summarize the development of X-ray CT in soil science, highlight the major issues relating to its use, outline some of the applications for overcoming these challenges and describe the potential of future technological advances for non-invasive soil characterization through integration with other complementary techniques.

Optimizing tillage management is one way to reduce the risk of soil compaction due to traffic load in Northeast China. In this study, we aimed to examine the responses of precompression stress (σpc), compression index (Cc), pore morphology (>30 µm), air-filled porosity (εa60), air permeability at matric potential of − 60 hPa (ka60) and saturated hydraulic conductivity (Ks) to harvest traffic on soil from two contrasting tillage practices using a 10-yr old field experiment. After the crop was harvested with a combine harvester, undistributed soil cores were collected in the 0–10 and 10–20 cm layers from non-traffic and traffic zones of no-tillage (NT) and moldboard plough (MP) plots. In the non-traffic zone, the MP management showed greater total porosity (εtotal), εa60 and macroporosity (εX-ray) than the NT. There were no differences in pore connectivity, mean pore size and ka60 of the 0–10 cm layer and in Ks of the 0–20 cm layer between the two tillage practices, however, more biopores were observed under NT. Harvest traffic showed no significant effects on NT soil. In the MP plots, the εtotal, εX-ray, and pore connectivity, were decreased and pores larger than 0.15 mm were preferentially compacted. As a result of traffic, MP soil displayed lower ka60 in the 0–20 cm layer and lower εX-ray and connectivity in the 10–20 cm layer. In the NT management, the pore system had greater water and air conduction efficiencies and stable properties. Thus, compared to MP, NT can mitigate the negative effects of harvest compaction on soil in Northeast China.

Measurements have been made of the effect of compaction on water retention, saturated hydraulic conductivity, and porosity of two English soils: North Wyke (NW) grassland clay topsoil and Broadbalk silty topsoil, fertilized inorganically (PKMg) or with farmyard manure (FYM). As expected, the FYM topsoil had greater porosity and greater water retention than PKMg topsoil, and the NW clay topsoil retained more water at each matric potential than the silty topsoils. Compaction had a clear effect on water retention at matric potentials wetter than -10 kPa for the PKMg and FYM soils, corresponding to voids greater than 30 mu m cylindrical diameter, whereas smaller voids appeared to be unaffected. The Pore-Cor void network model has been improved by including a Euler beta distribution to describe the sizes of the narrow interconnections, termed throats. The model revealed a change from bimodal to unimodal throat size distributions on compaction, as well as a reduction in sizes overall. It also matched the water retention curves more closely than van Genuchten fits and correctly predicted changes in saturated hydraulic conductivity better than those predicted by a prior statistical approach. However, the changes in hydraulic conductivity were masked by the stochastic variability of the model. Also, an artifact of the model, namely its inability to pack small features close together, caused incorrect increases in pore sizes on compaction. These deficiencies in the model demonstrate the need for an explicitly dual porous network model to account for the effects of compaction in soil.