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1. Regional spread of an atypical ESBL-producing Escherichia coli ST131H89 clone among different human and environmental reservoirs in Western Switzerland.

Author

Epi Infectieziekten Team 1, Medische Microbiologie, Infection & Immunity, JC onderzoeksprogramma Infectieziekten, Martischang, Romain, Seth-Smith, Helena, Verschuuren, Tess D, Héquet, Delphine, Gaïa, Nadia, François, Patrice, Fluit, Ad C, Kluytmans, Jan A J W, Seiffert, Salome N, Tacconelli, Evelina, Cherkaoui, Abdessalam, Harbarth, Stephan, Egli, Adrian, Kohler, Philipp, Epi Infectieziekten Team 1, Medische Microbiologie, Infection & Immunity, JC onderzoeksprogramma Infectieziekten, Martischang, Romain, Seth-Smith, Helena, Verschuuren, Tess D, Héquet, Delphine, Gaïa, Nadia, François, Patrice, Fluit, Ad C, Kluytmans, Jan A J W, Seiffert, Salome N, Tacconelli, Evelina, Cherkaoui, Abdessalam, Harbarth, Stephan, Egli, Adrian, and Kohler, Philipp

Published
2024

2. Regional spread of an atypical ESBL-producing Escherichia coli ST131H89 clone among different human and environmental reservoirs in Western Switzerland

Author

Martischang, Romain; https://orcid.org/0000-0001-5071-0893, Seth-Smith, Helena; https://orcid.org/0000-0002-6082-5114, Verschuuren, Tess D, Héquet, Delphine, Gaia, Nadia, François, Patrice, Fluit, Ad C; https://orcid.org/0000-0003-3432-0021, Kluytmans, Jan A J W, Seiffert, Salome N, Tacconelli, Evelina, Cherkaoui, Abdessalam; https://orcid.org/0000-0002-1801-5935, Harbarth, Stephan, Egli, Adrian; https://orcid.org/0000-0002-3564-8603, Kohler, Philipp; https://orcid.org/0000-0003-0427-8934, Martischang, Romain; https://orcid.org/0000-0001-5071-0893, Seth-Smith, Helena; https://orcid.org/0000-0002-6082-5114, Verschuuren, Tess D, Héquet, Delphine, Gaia, Nadia, François, Patrice, Fluit, Ad C; https://orcid.org/0000-0003-3432-0021, Kluytmans, Jan A J W, Seiffert, Salome N, Tacconelli, Evelina, Cherkaoui, Abdessalam; https://orcid.org/0000-0002-1801-5935, Harbarth, Stephan, Egli, Adrian; https://orcid.org/0000-0002-3564-8603, and Kohler, Philipp; https://orcid.org/0000-0003-0427-8934

Abstract

We describe the inter-regional spread of a novel ESBL-producing Escherichia coli subclone (ST131H89) in long-term care facility residents, general population, and environmental water sources in Western Switzerland between 2017 and 2020. The study highlights the importance of molecular surveillance for tracking emerging antibiotic-resistant pathogens in healthcare and community settings.

Published
2024

3. Regional spread of an atypical ESBL-producing Escherichia coli ST131H89 clone among different human and environmental reservoirs in Western Switzerland

Author

Martischang, Romain, primary, Seth-Smith, Helena, additional, Verschuuren, Tess D., additional, Héquet, Delphine, additional, Gaïa, Nadia, additional, François, Patrice, additional, Fluit, Ad C., additional, Kluytmans, Jan A. J. W., additional, Seiffert, Salome N., additional, Tacconelli, Evelina, additional, Cherkaoui, Abdessalam, additional, Harbarth, Stephan, additional, Egli, Adrian, additional, and Kohler, Philipp, additional

Published
2024
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5. Populations of extended-spectrum β-lactamase-producing Escherichia coli and Klebsiella pneumoniae are different in human-polluted environment and food items: a multicentre European study

Author

Martak, Daniel, Guther, Julia, Verschuuren, Tess D., Valot, Benoit, Conzelmann, Nadine, Bunk, Stefanie, Riccio, M. Eugenia, Salamanca, Elena, Meunier, Alexandre, Henriot, Charles P., Brossier, Caroline Pressacco, Bertrand, Xavier, Cooper, Ben S., Harbarth, Stephan, Tacconelli, Evelina, Fluit, Ad C., Rodriguez-Baño, Jesús, Kluytmans, Jan A.J.W., Peter, Silke, and Hocquet, Didier

Published
2022
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6. Gut microbiome dynamics in index patients colonized with extended-spectrum beta-lactamase (ESBL)-producing Enterobacterales after hospital discharge and their household contacts

Author

MMB Research line 2, Infection & Immunity, Epi Infectieziekten Team 1, MMB, Medische Microbiologie, JC onderzoeksprogramma Infectieziekten, Top, Janetta, Verschuuren, Tess D., Viveen, Marco C., Riccio, M. Eugenia, Harbarth, Stephan, Kluytmans, Jan A.J.W., Willems, Rob J.L., Paganelli, Fernanda L., MMB Research line 2, Infection & Immunity, Epi Infectieziekten Team 1, MMB, Medische Microbiologie, JC onderzoeksprogramma Infectieziekten, Top, Janetta, Verschuuren, Tess D., Viveen, Marco C., Riccio, M. Eugenia, Harbarth, Stephan, Kluytmans, Jan A.J.W., Willems, Rob J.L., and Paganelli, Fernanda L.

Published
2023

7. Extended-spectrum beta-lactamase (ESBL)-producing and non-ESBL-producing Escherichia coli isolates causing bacteremia in the Netherlands (2014 - 2016) differ in clonal distribution, antimicrobial resistance gene and virulence gene content

Author

van Hout, Denise, Verschuuren, Tess D, Bruijning-Verhagen, Patricia C J, Bosch, Thijs, Schürch, Anita C, Willems, Rob J L, Bonten, Marc J M, Kluytmans, Jan A J W, van Hout, Denise, Verschuuren, Tess D, Bruijning-Verhagen, Patricia C J, Bosch, Thijs, Schürch, Anita C, Willems, Rob J L, Bonten, Marc J M, and Kluytmans, Jan A J W

Published
2020

8. Extended-spectrum beta-lactamase (ESBL)-producing and non-ESBL-producing Escherichia coli isolates causing bacteremia in the Netherlands (2014 - 2016) differ in clonal distribution, antimicrobial resistance gene and virulence gene content

Author

Epi Infectieziekten Team 1, Infection & Immunity, JC onderzoeksprogramma Infectieziekten, Child Health, MMB Research line 2, Epi Infectieziekten, MMB, van Hout, Denise, Verschuuren, Tess D, Bruijning-Verhagen, Patricia C J, Bosch, Thijs, Schürch, Anita C, Willems, Rob J L, Bonten, Marc J M, Kluytmans, Jan A J W, Epi Infectieziekten Team 1, Infection & Immunity, JC onderzoeksprogramma Infectieziekten, Child Health, MMB Research line 2, Epi Infectieziekten, MMB, van Hout, Denise, Verschuuren, Tess D, Bruijning-Verhagen, Patricia C J, Bosch, Thijs, Schürch, Anita C, Willems, Rob J L, Bonten, Marc J M, and Kluytmans, Jan A J W

Published
2020

9. Extended-spectrum beta-lactamase (ESBL)-producing and non-ESBL-producing Escherichia coli isolates causing bacteremia in the Netherlands (2014 – 2016) differ in clonal distribution, antimicrobial resistance gene and virulence gene content

Author

van Hout, Denise, primary, Verschuuren, Tess D., additional, Bruijning-Verhagen, Patricia C. J., additional, Bosch, Thijs, additional, Schürch, Anita C., additional, Willems, Rob J. L., additional, Bonten, Marc J. M., additional, and Kluytmans, Jan A. J. W., additional

Published
2020
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10. Design of the EPIGENEC Study: Assessing the EPIdemiology and GENetics of Escherichia coli in the Netherlands

Author

Hout, Denise van, Verschuuren, Tess D., Bruijning-Verhagen, Patricia C. J., Bosch, Thijs, Ascelijn Reuland, E., Fluit, Ad C., Schürch, Anita C., Willems, Rob J. L., de Greeff, Sabine C., Veen, Annemarie van ’t, Kluytmans, Jan A. J. W., and Bonten, Marc J. M.

Subjects
microbiology, bacterial infections and mycoses
Abstract

Background: Infections caused by E. coli cause considerable disease burden and range from frequently occurring and relatively innocent urinary tract infection (UTI) to severe bloodstream infection (BSI). The incidence of infections caused by ESBL-producing E. coli (ESBL-PEc) is increasing, justifying surveillance and development of preventive strategies in several domains. Faecal carriage is universal and believed to be the most important reservoir for E. coli from which infections can originate. It is currently unknown to what extent Dutch E. coli carriage strains in the community reflect isolates causing disease. In this study, we will perform comparative genomics to infer the population structures of human-derived ESBL-PEc from community- and hospital-acquired infections and from community-based faecal carriage samples in the Netherlands. Furthermore, we will describe the molecular epidemiology of E. coli isolates causing invasive disease (BSI). Methods: This study uses four different microbiological data sources: 1) ESBL-PEc from patients with community-acquired UTI tested in primary care between May and November 2017, 2) ESBL-PEc from urine cultures obtained from patients hospitalized between January 2014 and December 2016, 3) E. coli from blood cultures obtained from patients hospitalized between January 2014 and December 2016, and 4) ESBL-PEc from faecal samples collected in a national population- prevalence study performed between January 2014 and January 2017. Clinical epidemiological data was collected from all patients and all isolates were subjected to whole genome sequencing. Discussion: The EPIGENEC study (EPIdemiology and GENetics of E. coli) will describe the molecular epidemiology of E. coli BSI and assess the genomic population structure of ESBL-PEc strains from community-acquired and nosocomial infections, and of ESBL-PEc reflecting community-based faecal carriage. Information from these studies may assist in optimizing surveillance strategies and determining targets and potential impact of future new preventive measures.

Published
2019

11. Corrigendum : Mlplasmids: A user-friendly tool to predict plasmid-and chromosome-derived sequences for single species, (Microbial Genomics), (2018), 4, 10.1099/mgen.0.000224

Author

Arredondo-Alonso, Sergio, Rogers, Malbert R.C., Braat, Johanna C., Verschuuren, Tess D., Top, Janetta, Corander, Jukka, Willems, Rob J.L., and Schürch, Anita C.

Subjects
Medicine(all), Published Erratum, Journal Article
Abstract

There was an error in the Funding information section in the published article. The Funding information section should include the following sentence: ‘This study was supported by the Joint Programming Initiative in Antimicrobial Resistance (JPIAMR Third call, STARCS, JPIAMR2016-AC16/00039 to SA, RJLW).’ The author apologizes for any inconvenience caused.

Published
2019

12. Corrigendum: Mlplasmids: A user-friendly tool to predict plasmid-and chromosome-derived sequences for single species, (Microbial Genomics), (2018), 4, 10.1099/mgen.0.000224

Author

MMB Research line 2, MMB, Epi Infectieziekten Team 1, JC onderzoeksprogramma Infectieziekten, Infection & Immunity, Arredondo-Alonso, Sergio, Rogers, Malbert R.C., Braat, Johanna C., Verschuuren, Tess D., Top, Janetta, Corander, Jukka, Willems, Rob J.L., Schürch, Anita C., MMB Research line 2, MMB, Epi Infectieziekten Team 1, JC onderzoeksprogramma Infectieziekten, Infection & Immunity, Arredondo-Alonso, Sergio, Rogers, Malbert R.C., Braat, Johanna C., Verschuuren, Tess D., Top, Janetta, Corander, Jukka, Willems, Rob J.L., and Schürch, Anita C.

Published
2019

14. mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species

Author

MMB Research line 2, MMB, Epi Infectieziekten Team 1, JC onderzoeksprogramma Infectieziekten, Infection & Immunity, Arredondo-Alonso, Sergio, Rogers, Malbert R.C., Braat, Johanna C., Verschuuren, Tess D., Top, Janetta, Corander, Jukka, Willems, Rob J.L., Schürch, Anita C., MMB Research line 2, MMB, Epi Infectieziekten Team 1, JC onderzoeksprogramma Infectieziekten, Infection & Immunity, Arredondo-Alonso, Sergio, Rogers, Malbert R.C., Braat, Johanna C., Verschuuren, Tess D., Top, Janetta, Corander, Jukka, Willems, Rob J.L., and Schürch, Anita C.

Published
2018

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