21 results on '"Sode J"'
Search Results
2. Spectroscopy and modelling of catalyst nanoparticles using STEM-EELS
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Sode, J, Nicholls, R, Nellist, P, and Ozkaya, D
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Modeling ,Scanning transmission electron microscopy ,Electron energy loss spectroscopy - Abstract
This thesis concerns the oxygen reduction reaction (ORR) in the proton exchange membrane fuel cell (PEMFC) and aims to understand the interaction of oxygen with platinum-cobalt (PtCo) catalyst nanoparticles. The techniques employed are aberrated scanning transmission electron microscopy (STEM), electron energy loss spectroscopy (EELS) and modelling through density functional theory (DFT). The comparison of certain features in the experimental and simulated EEL spectra allows for selective optimisation in catalyst design. It is imperative to optimise the design of Pt-based alloys because Pt catalysts are costly. There is also an added advantage of manifold increase in catalytic activity with PtCo alloys in particular. In order to study the oxygen interaction, the focal point of study becomes the oxygen coverage on the surface of the PtCo alloys. This requires detailed characterisation at the nanoscale and as such, optical techniques are not ideal. Using HAADF STEM means high spatial resolution and Z-contrast, which is crucial to investigating light and heavy elements often seen in catalyst materials. However, due to the Z-dependence, elements as light as oxygen may not readily appear in the HAADF image of catalysts and therefore EELS becomes an important tool due to its large range of elemental sensitivity to chemical composition. The most logical starting point to investigate the oxygen coverage on the PtCo alloys is to find a link between the oxidation state of the metals and the oxygen binding in the alloys. The next step is to correlate detailed features in the oxygen and metals EEL spectra and explain them through modelling. DFT modelling is not enough to fully explain these features and hence atomic multiplet theory (AMT) is another tool used to corroborate experiment, particularly in the calculation of Co spectra. A methodology for the extraction of oxidation states using the white line ratio in the cobalt EEL signal (Co L2,3-edge) is developed. Specifically, the PtCo nanoparticles are separated into core and shell regions in order to highlight possible differences in the binding of oxygen on the surface compared to rest of the nanoparticle. In addition, the influence of size on the oxygen binding is also examined. The errors associated with this method as well as potential difficulties in its application are discussed. The experimental results are tied to observed features in the calculated Co and oxygen spectra from various environments using AMT and DFT. Combining spectroscopy and modelling, it is shown that the understanding of the oxygen interaction with the PtCo alloys only increases efficiency of catalyst design. This advantage acts as a stepping stone for other studies with such nanoscale specimens like nanoparticles in the catalyst research field.
- Published
- 2021
3. Associations between functional polymorphisms in the NFκB signaling pathway and response to anti-TNF treatment in Danish patients with inflammatory bowel disease
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Bank, S, Andersen, P S, Burisch, J, Pedersen, N, Roug, S, Galsgaard, J, Turino, S Y, Brodersen, J B, Rashid, S, Rasmussen, B K, Avlund, S, Olesen, T B, Hoffmann, H J, Thomsen, M K, Thomsen, VØ, Frydenberg, M, Nexø, B A, Sode, J, Vogel, U, and Andersen, V
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- 2014
- Full Text
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4. Genetically determined high activity of IL-12 and IL-18 in ulcerative colitis and TLR5 in Crohns disease were associated with non-response to anti-TNF therapy
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Bank, S., Andersen, P. S., Burisch, J., Pedersen, N., Roug, S., Galsgaard, J., Turino, S. Y., Brodersen, J. B., Rashid, S., Rasmussen, B. K., Avlund, S., Olesen, T. B., Hoffmann, H. J., Nexø, B. A., Sode, J., Vogel, U., Andersen, V., Bank, S., Andersen, P. S., Burisch, J., Pedersen, N., Roug, S., Galsgaard, J., Turino, S. Y., Brodersen, J. B., Rashid, S., Rasmussen, B. K., Avlund, S., Olesen, T. B., Hoffmann, H. J., Nexø, B. A., Sode, J., Vogel, U., and Andersen, V.
- Published
- 2018
5. Mitochondrial haplogroups in patients with rheumatoid arthritis with respect to biological treatment
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Duhn, P. H., Sode, J., Hagen, C., Christiansen, M., and Locht, H.
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human *rheumatoid arthritis *college *American *rheumatology *health practitioner *patient haplogroup population DAS28 European Parkinson disease control group blood sampling confidence interval mitochondrial haplogroup mutation gender haplotype rheumatic disease disease activity pathogenesis logistic regression analysis autoinflammatory disease data base clinical study diseases mitochondrial DNA rheumatoid factor immunoglobulin M DNA - Abstract
Background/Purpose: Throughout evolution mutations in mitochondrial DNA (mtDNA) have accumulated sequentially subdividing the human population into different haplogroups classificed from A-Z. Specific mtDNA haplogroups have been associated with the development of several conditions such as Alzheimer and Parkinsons diseases. RA is a chronic auto-inflammatory disorder in which the pathogenesis is not fully understood. We analyzed the distribution of mtDNA haplogroups in a cohort of patients with RA defined by disease activity, presence of rheumatoid factor, and biological or conventional treatment. We compared the distribution of mtDNA haplogroups in the RA-cohort with two historical control groups from the background population. Methods: Two-hundred nineteen consecutive patients with RA had mtDNA, isolated, sequenced and haplogroups were identified from blood samples. Patients were diagnosed according to the American College of Rheumatology (ACR)/European league against Rheumatism (EULAR) criteria. Demographic and clinical data (rheumatoid factor status, erosions, disease activity score 28-joints (DAS-28), biological/synthetic anti-rheumatic treatments were retrieved from the Danish nationwide database (DANBIO). Logistic regression analyses were performed to test for associations. Results: One-hundred eighty-four patients were eligible for analysis (29 were excluded due to rare non-European haplogroups, 6 had unknown haplogroups). Haplogroup frequencies were as follows: H (n= 88, 47.8%), U (n= 37, 20.1%), T (n= 22, 12.0%), J (n= 16, 8.7%), K (n= 11, 5.9%), HV (n= 6, 3.3%) and V (n= 4, 2.2%). In the overall RA-cohort the distribution of individual haplotypes was identical to the background population. None of the haplogroups were significantly associated with gender, anti-CCP, IgM RF or DAS-28. Macrohaplogroup HV was associated with administration of biological treatment (OR = 2.13; 95% Confidence Interval (CI): 1.13 - 4.07; p = 0.020). However, we found a trend towards fewer erosions in patients with haplogroup HV (OR = 0.54, 95% CI: 0.29 - 1.00, p = 0.051). Conclusion: The distribution of mtDNA haplogroups in the RA-cohort did not differ from the background population. However, there was a significant overrepresentation of individuals with haplogroup HV (OR 2.13) among patients undergoing biological treatment. When patients were grouped according to presence of radiographic erosion there was a trend pointing in the opposite direction. Erosive patients were less likely to belong to haplogroup HV (OR 0.54). When subjects were stratified according to DAS-28 level there were no significant associations with a certain haplogroup. We have shown that in a randomly selected cohort of patients with RA the HV mtDNA haplogroup may be overrepresented in a subgroup of patients, but no clear association with respect to diseases severity was observed.
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- 2015
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6. Confirmation of an IRAK3 polymorphism as a genetic marker predicting response to anti-TNF treatment in rheumatoid arthritis
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Sode, J, primary, Vogel, U, additional, Bank, S, additional, Andersen, P S, additional, Hetland, M L, additional, Locht, H, additional, Heegaard, N H H, additional, and Andersen, V, additional
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- 2016
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7. Genetically determined high activity of IL-12 and IL-18 in ulcerative colitis and TLR5 in Crohns disease were associated with non-response to anti-TNF therapy
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Bank, S, Andersen, P S, Burisch, J, Pedersen, N, Roug, S, Galsgaard, J, Turino, S Y, Brodersen, J B, Rashid, S, Rasmussen, B K, Avlund, S, Olesen, T B, Hoffmann, H J, Nexø, B A, Sode, J, Vogel, U, and Andersen, V
- Abstract
Anti-tumour necrosis factor-α (TNF-α) is used for treatment of severe cases of inflammatory bowel diseases (IBD), including Crohn’s disease (CD) and ulcerative colitis (UC). However, one-third of the patients do not respond to the treatment. A recent study indicated that genetically determined high activity of pro-inflammatory cytokines, including interleukin-1β (IL-1β), IL-6 and interferon gamma (IFN-γ), are associated with non-response to anti-TNF therapy. Using a candidate gene approach, 21 functional single-nucleotide polymorphisms (SNPs) in 14 genes in the Toll-like receptors, the inflammasome and the IFNG pathways were assessed in 482 and 256 prior anti-TNF naïve Danish patients with CD and UC, respectively. The results were analysed using logistic regression (adjusted for age and gender). Eight functional SNPs were associated with anti-TNF response either among patients with CD (TLR5 (rs5744174) and IFNGR2 (rs8126756)), UC (IL12B (rs3212217), IL18 (rs1946518), IFNGR1 (rs2234711), TBX21 (rs17250932) and JAK2 (rs12343867)) or in the combined cohort of patient with CD and UC (IBD) (NLRP3 (rs10754558), IL12B (rs3212217) and IFNGR1 (rs2234711)) (P<0.05). Only the association with heterozygous genotype of IL12B (rs3212217) (OR: 0.24, 95% CI: 0.11–0.53, P=0.008) among patients with UC withstood Bonferroni correction for multiple testing. In conclusion, Our results suggest that SNPs associated with genetically determined high activity of TLR5 among patients with CD and genetically determined high IL-12 and IL-18 levels among patients with UC were associated with non-response. Further studies will evaluate whether these genes may help stratifying patients according to the expected response to anti-TNF treatment.
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- 2018
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8. Confirmation of an IRAK3 polymorphism as a genetic marker predicting response to anti-TNF treatment in rheumatoid arthritis
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Sode, J, Vogel, U, Bank, S, Andersen, P S, Hetland, M L, Locht, H, Heegaard, N H H, and Andersen, V
- Abstract
Several genetic variants in Toll-like receptor (TLR) and nuclear factor (NF)-κB signalling pathways have been reported associated with responsiveness to tumour necrosis factor inhibitor (anti-TNF) treatment in rheumatoid arthritis (RA). The present study was undertaken to replicate these findings. In a retrospective case–case study including 1007 Danish anti-TNF-treated RA patients, we genotyped 7 previously reported associated single-nucleotide polymorphisms (SNPs) in these pathways. Furthermore, 5 SNPs previously reported by our group were genotyped in a subcohort (N=469). Primary analyses validated the IRAK3 rs11541076 variant as associated (odds ratio (OR)=1.33, 95% confidence interval (CI): 1.00–1.77, P-value=0.047) with a positive treatment response (EULAR (European League Against Rheumatism) good/moderate vs none response at 4±2 months), and found the NLRP3 rs461266 variant associated (OR=0.75, 95% CI: 0.60–0.94, P=0.014) with a negative treatment response. Meta-analyses combining data from previous studies suggested smaller effect sizes of associations between variant alleles of CHUK rs11591741, NFKBIB rs3136645 and rs9403 and a negative treatment response. In conclusion, this study validates rs11541076 in IRAK3, a negative regulator of TLR signalling, as a predictor of anti-TNF treatment response, and suggests true positive associations of previously reported SNPs within genes encoding activators/inhibitors of NF-κB (CHUK, MYD88, NFKBIB, and NLRP3).
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- 2018
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9. Is the weight loss of hyperbaric habitation a disorder of osmoregulation
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Raymond, L. W, Raymond, N. S, Frattiali, V. P, Sode, J, Leach, C. S, and Spaur, W. H
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Aerospace Medicine - Abstract
To examine the weight loss of hyperbaric helium-oxygen habitation, the exchange of liquids and calories was measured in six men who lived in this atmosphere for 32 d. The maximum pressure was 49.5 ATA. The men lost 3.7-10.1 kg, in spite of warm ambient (31-32 C) temperatures and adequate calories (2,737 kcal/d) provided for the sedentary ways of chamber living. Weight loss and a calculated fluid deficit were accompanied by significant hemoconcentration, shown by increases in serum proteins. These changes were followed by a rise in urinary aldosterone and vasopressin, but not thirst. Weight loss in hyperbaric atmospheres is probably multifactorial, but the data suggests an uncoupling of normal osmoregulation may have occured in the present set of subjects. This may have been due to altered lung mechanics, increased catecholamines, or effects of high pressure on cellular responses to vasopressin.
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- 1980
10. Satellite association and trisomy in thyrotoxicosis.
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Nankin, H R, Sode, J, and Ball, M F
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- 1968
11. Epidemiology and clinical characteristics of biopsy-confirmed adult-onset IgA vasculitis in southern Sweden.
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Thalen M, Gisslander K, Segelmark M, Sode J, Jayne D, and Mohammad AJ
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- Male, Adult, Humans, Female, Child, Retrospective Studies, Sweden epidemiology, Immunoglobulin A, Biopsy, IgA Vasculitis diagnosis, IgA Vasculitis epidemiology, Vasculitis epidemiology, Renal Insufficiency, Chronic
- Abstract
Objective: Immunoglobulin A vasculitis (IgAV) is the most prevalent primary childhood vasculitis in Sweden, but is considerably rarer in adults. This study aims to describe the epidemiology, clinical characteristics and renal outcome of adult-onset IgAV in Skåne, Sweden., Methods: The study area consisted of Skåne, the southernmost region of Sweden, with a population ≥18 years of 990 464 on 31 December 2010. Adult patients assigned the International Classification of Diseases-10 code for IgAV (D69.0) from 2000 through 2019 were retrospectively identified in a population-based database. Medical records were reviewed to validate the diagnosis of IgAV and extract data. Only patients with clinical manifestations of IgAV and biopsy-confirmed disease were included. The annual incidence and point prevalence of biopsy-confirmed IgAV were estimated., Results: Fifty-nine patients (19 women) were classified as having adult-onset IgAV. The incidence was 3 per 1 000 000 and was higher among men than women (4 vs 2/1 000 000, p=0.004). Ninety-seven per cent of patients presented with non-thrombocytopenic purpura, 78% with renal involvement, 59% with arthritis/arthralgia and 39% with gastrointestinal symptoms. Fifteen per cent developed chronic kidney disease stage ≥G3 a and one patient progressed to end-stage kidney disease during follow-up., Conclusion: Adult-onset IgAV is rare in southern Sweden with the incidence higher in men than in women. IgAV frequently affects the kidneys and leads to chronic kidney disease in adults, although the long-term renal outcome appears favourable compared with other small-vessel vasculitides affecting the kidneys., Competing Interests: Competing interests: None declared., (© Author(s) (or their employer(s)) 2024. Re-use permitted under CC BY. Published by BMJ.)
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- 2024
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12. Genetically determined high activities of the TNF-alpha, IL23/IL17, and NFkB pathways were associated with increased risk of ankylosing spondylitis.
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Sode J, Bank S, Vogel U, Andersen PS, Sørensen SB, Bojesen AB, Andersen MR, Brandslund I, Dessau RB, Hoffmann HJ, Glintborg B, Hetland ML, Locht H, Heegaard NH, and Andersen V
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- Adult, Case-Control Studies, Denmark, Female, Gene Expression Regulation, Heterozygote, Homozygote, Humans, Interleukin-17 immunology, Interleukin-23 immunology, Male, Middle Aged, NF-kappa B immunology, Polymorphism, Single Nucleotide, Protein Tyrosine Phosphatase, Non-Receptor Type 22 genetics, Protein Tyrosine Phosphatase, Non-Receptor Type 22 immunology, Receptors, Interleukin genetics, Receptors, Interleukin immunology, Receptors, Tumor Necrosis Factor, Type I genetics, Receptors, Tumor Necrosis Factor, Type I immunology, Registries, Risk, Signal Transduction immunology, Spondylitis, Ankylosing immunology, Spondylitis, Ankylosing pathology, Toll-Like Receptor 1 genetics, Toll-Like Receptor 1 immunology, Toll-Like Receptor 4 genetics, Toll-Like Receptor 4 immunology, Tumor Necrosis Factor-alpha immunology, Genetic Predisposition to Disease, Interleukin-17 genetics, Interleukin-23 genetics, NF-kappa B genetics, Signal Transduction genetics, Spondylitis, Ankylosing genetics, Tumor Necrosis Factor-alpha genetics
- Abstract
Background: Ankylosing spondylitis (AS) results from the combined effects of susceptibility genes and environmental factors. Polymorphisms in genes regulating inflammation may explain part of the heritability of AS., Methods: Using a candidate gene approach in this case-control study, 51 mainly functional single nucleotide polymorphisms (SNPs) in genes regulating inflammation were assessed in 709 patients with AS and 795 controls. Data on the patients with AS were obtained from the DANBIO registry where patients from all of Denmark are monitored in routine care during treatment with conventional and biologic disease modifying anti-rheumatic drugs (bDMARDs). The results were analyzed using logistic regression (adjusted for age and sex)., Results: Nine polymorphisms were associated with risk of AS (p < 0.05). The polymorphisms were in genes regulating a: the TNF-α pathway (TNF -308 G > A (rs1800629), and - 238 G > A (rs361525); TNFRSF1A -609 G > T (rs4149570), and PTPN22 1858 G > A (rs2476601)), b: the IL23/IL17 pathway (IL23R G > A (rs11209026), and IL18-137 G > C (rs187238)), or c: the NFkB pathway (TLR1 743 T > C (rs4833095), TLR4 T > C (rs1554973), and LY96-1625 C > G (rs11465996)). After Bonferroni correction the homozygous variant genotype of TLR1 743 T > C (rs4833095) (odds ratios (OR): 2.59, 95% confidence interval (CI): 1.48-4.51, p = 0.04), and TNFRSF1A -609 G > T (rs4149570) (OR: 1.79, 95% CI: 1.31-2.41, p = 0.01) were associated with increased risk of AS and the combined homozygous and heterozygous variant genotypes of TNF -308 G > A (rs1800629) (OR: 0.56, 95% CI: 0.44-0.72, p = 0.0002) were associated with reduced risk of AS., Conclusion: We replicated associations between AS and the polymorphisms in TNF (rs1800629), TNFRSF1A (rs4149570), and IL23R (rs11209026). Furthermore, we identified novel risk loci in TNF (rs361525), IL18 (rs187238), TLR1 (rs4833095), TLR4 (rs1554973), and LY96 (rs11465996) that need validation in independent cohorts. The results suggest that genetically determined high activity of the TNF-α, IL23/IL17, and NFkB pathways increase risk of AS.
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- 2018
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13. Mitochondrial haplogroups in patients with rheumatoid arthritis: No association with disease and disease manifestations.
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Duhn PH, Sode J, Hagen CM, Christiansen M, and Locht H
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- Adult, Aged, Aged, 80 and over, Female, Humans, Male, Middle Aged, Prospective Studies, Arthritis, Rheumatoid genetics, DNA, Mitochondrial genetics, Haplotypes
- Abstract
Objective: To describe the distribution of specific mitochondrial DNA (mtDNA) haplogroups (hgs) in a cohort of patients with rheumatoid arthritis (RA)., Methods: Two-hundred nineteen consecutive patients with RA had mtDNA isolated from their blood, sequenced and haplotyped. Patients were diagnosed according to the American College of Rheumatology (ACR)/European league against Rheumatism (EULAR) criteria. Demographic and clinical data were retrieved from the Danish nationwide database (DANBIO). Logistic regression analyses were performed to test for associations., Results: One-hundred eighty-four patients were eligible for analysis. Haplogroup frequencies were: H (n = 88; 47.8%), U (n = 37; 20.1%), T (n = 22; 12.0%), J (n = 16; 8.7%), K (n = 11; 5.9%), HV (n = 6; 3.3%) and V (n = 4; 2.2%). The distribution of individual hgs was identical to the background population. Radiographic erosions were significantly associated with hg clusters JT (OR = 2.37, 95% confidence interval (CI): 1.07-5.53, p = 0.038). Significantly fewer patients from hg cluster JT received biological treatment (OR = 0.17, 95% CI: 0.03-0.87, p = 0.038). Albeit, none of these associations were significant when corrected for multiple tests., Conclusion: There was no significant association between mtDNA hgs and presence of RA or disease manifestations. There was an, albeit insignificant, overrepresentation of patients with hg JT among patients with erosive disease; however, slightly fewer patients in the JT group were treated with biological drugs.
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- 2017
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14. Polymorphisms in the Toll-Like Receptor and the IL-23/IL-17 Pathways Were Associated with Susceptibility to Inflammatory Bowel Disease in a Danish Cohort.
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Bank S, Andersen PS, Burisch J, Pedersen N, Roug S, Galsgaard J, Ydegaard Turino S, Brodersen JB, Rashid S, Kaiser Rasmussen B, Avlund S, Bastholm Olesen T, Hoffmann HJ, Andersen Nexø B, Sode J, Vogel U, and Andersen V
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- Cohort Studies, Colitis, Ulcerative genetics, Crohn Disease genetics, Female, Genetic Association Studies, Humans, Inflammatory Bowel Diseases epidemiology, Interleukin-17 genetics, Interleukin-17 metabolism, Interleukin-23 genetics, Interleukin-23 metabolism, Linkage Disequilibrium, Logistic Models, Male, Metabolic Networks and Pathways genetics, Polymorphism, Single Nucleotide, Genetic Predisposition to Disease, Inflammatory Bowel Diseases genetics, Toll-Like Receptors genetics
- Abstract
Background: The inflammatory bowel diseases (IBD), Crohn's disease (CD) and ulcerative colitis (UC), result from the combined effects of susceptibility genes and environmental factors. Previous studies have shown that polymorphisms in the Toll-like receptor (TLR), the apoptosis, the IL-23/IL-17 and the interferon gamma (IFNG) pathways are associated with risk of both CD and UC., Methods: Using a candidate gene approach, 21 functional single nucleotide polymorphisms (SNPs) in 15 genes were assessed in a clinical homogeneous group of severely diseased ethnic Danish patients consisting of 624 patients with CD, 411 patients with UC and 795 controls. The results were analysed using logistic regression., Results: The polymorphisms TLR5 (rs5744174) and IL12B (rs6887695) were associated with risk of CD, and TLR1 (rs4833095) and IL18 (rs187238) were associated with risk of both CD and UC (p<0.05). After Bonferroni correction for multiple testing, the homozygous variant genotype of TLR1 743 T>C (rs4833095) was associated with increased risk CD (OR: 3.15, 95% CI: 1.59-6.26, p = 0.02) and CD and UC combined (OR: 2.96, 95% CI: 1.64-5.32, p = 0.005)., Conclusion: Our results suggest that genetically determined high activity of TLR1 and TLR5 was associated with increased risk of both CD and UC and CD, respectively. This supports that the host microbial composition or environmental factors in the gut are involved in risk of IBD. Furthermore, genetically determined high activity of the IL-23/IL-17 pathway was associated with increased risk of CD and UC. Overall, our results support that genetically determined high inflammatory response was associated with increased risk of both CD and UC.
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- 2015
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15. Genetic Variations in Pattern Recognition Receptor Loci Are Associated with Anti-TNF Response in Patients with Rheumatoid Arthritis.
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Sode J, Vogel U, Bank S, Andersen PS, Hetland ML, Locht H, Heegaard NH, and Andersen V
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- Adalimumab therapeutic use, Adult, Aged, Alleles, Arthritis, Rheumatoid drug therapy, Etanercept therapeutic use, Female, Gene Frequency, Genetic Association Studies, Genetic Loci, Humans, Inflammasomes genetics, Infliximab therapeutic use, Interferon-gamma genetics, Linkage Disequilibrium, Male, Middle Aged, NLR Proteins, Retrospective Studies, Treatment Outcome, Adaptor Proteins, Signal Transducing genetics, Antirheumatic Agents therapeutic use, Apoptosis Regulatory Proteins genetics, Arthritis, Rheumatoid genetics, Polymorphism, Single Nucleotide, Toll-Like Receptors genetics
- Abstract
Objectives: To determine whether genetic variation within genes related to the Toll-like receptor, inflammasome and interferon-γ pathways contributes to the differences in treatment response to tumour necrosis factor inhibitors (anti-TNF) in patients with rheumatoid arthritis (RA)., Methods: In a retrospective case-case study, we assessed 23 functional single nucleotide polymorphisms (SNPs) in 15 genes. We included 538 anti-TNF naïve Danish RA patients from the nationwide DANBIO database. Multivariable logistic regression analyses were performed to detect associations (p-value<0.05) between genotypes and European League Against Rheumatism (EULAR) treatment responses. False Discovery Rate corrections for multiple testing (q-value) and stratified analyses were performed to investigate association with individual therapies and IgM-rheumatoid factor (RF) status., Results: Six of twenty successfully genotyped polymorphisms were nominally associated with EULAR treatment response. Three of these were in weak to moderate linkage disequilibrium with polymorphisms previously reported associated with anti-TNF treatment response. TLR5(rs5744174) variant allele carriers (odds ratio(OR) = 1.7(1.1-2.5),p = 0.010,q = 0.46) and TLR1(rs4833095) homozygous variant carriers (OR = 2.8(1.1-7.4),p = 0.037,q = 0.46) had higher odds for a positive treatment response. NLRP3(rs10754558) variant allele carriers (odds ratio(OR) = 0.6(0.4-1.0),p = 0.045,q = 0.46) were more likely to have a negative treatment response. The association in TLR5(rs5744174) remained significant after correction for multiple comparisons among patients negative for RF (OR = 6.2(2.4-16.3),p = 0.0002,q = 0.024). No other association withstood correction for multiple testing. Post hoc analyses showed that change in Patient Global score on a visual analogue scale (VAS) and change in pain VAS were the main factors responsible for the association., Conclusions: We reproduced previously reported associations between genetic variation in the TLR10/1/6 gene cluster, TLR5, and NLRP3 loci and response to anti-TNF treatment in RA. Changes in VAS pain and patient global scores were the main contributors to the association found for TLR5. Furthermore, we identified other candidate genes that require replication in independent cohorts.
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- 2015
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16. Polymorphisms in the inflammatory pathway genes TLR2, TLR4, TLR9, LY96, NFKBIA, NFKB1, TNFA, TNFRSF1A, IL6R, IL10, IL23R, PTPN22, and PPARG are associated with susceptibility of inflammatory bowel disease in a Danish cohort.
- Author
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Bank S, Skytt Andersen P, Burisch J, Pedersen N, Roug S, Galsgaard J, Ydegaard Turino S, Brodersen JB, Rashid S, Kaiser Rasmussen B, Avlund S, Bastholm Olesen T, Jürgen Hoffmann H, Kragh Thomsen M, Ostergaard Thomsen V, Frydenberg M, Andersen Nexø B, Sode J, Vogel U, and Andersen V
- Subjects
- Adult, Aged, Case-Control Studies, Female, Humans, Male, Middle Aged, Inflammatory Bowel Diseases genetics, Interleukins genetics, NF-kappa B genetics, PPAR gamma genetics, Polymorphism, Single Nucleotide, Protein Tyrosine Phosphatase, Non-Receptor Type 22 genetics, Toll-Like Receptors genetics
- Abstract
Background: The inflammatory bowel diseases (IBD), Crohn's disease (CD) and ulcerative colitis (UC), result from the combined effects of susceptibility genes and environmental factors. Polymorphisms in genes regulating inflammation may explain part of the genetic heritage., Methods: Using a candidate gene approach, 39 mainly functional single nucleotide polymorphisms (SNPs) in 26 genes regulating inflammation were assessed in a clinical homogeneous group of severely diseased patients consisting of 624 patients with CD, 411 patients with UC and 795 controls. The results were analysed using logistic regression., Results: Sixteen polymorphisms in 13 genes involved in regulation of inflammation were associated with risk of CD and/or UC (p ≤ 0.05). The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL6R (rs4537545), IL23R (rs11209026) and PTPN22 (rs2476601) were associated with risk of CD and the polymorphisms TLR2 (rs1816702), TLR4 (rs1554973 and rs12377632), TLR9 (rs352139), LY96 (rs11465996), NFKBIA (rs696), TNFA (rs1800629), TNFRSF1A (rs4149570), IL10 (rs3024505), IL23R (rs11209026), PTPN22 (rs2476601) and PPARG (rs1801282) were associated with risk of UC. When including all patients (IBD) the polymorphisms TLR2 (rs4696480 and rs1816702), TLR4 (rs1554973 and rs12377632), TLR9 (rs187084), TNFRSF1A (rs4149570), IL6R (rs4537545), IL10 (rs3024505), IL23R (rs11209026) and PTPN22 (rs2476601) were associated with risk. After Bonferroni correction for multiple testing, both the homozygous and the heterozygous variant genotypes of IL23R G>A(rs11209026) (OR(CD,adj): 0.38, 95% CI: 0.21-0.67, p = 0.03; OR(IBD,adj) 0.43, 95% CI: 0.28-0.67, p = 0.007) and PTPN22 1858 G>A(rs2476601) (OR(CD,unadj) 0.54, 95% CI: 0.41-0.72, p = 7*10-4; OR(IBD,unadj): 0.61, 95% CI: 0.48-0.77, p = 0.001) were associated with reduced risk of CD., Conclusion: The biological effects of the studied polymorphisms suggest that genetically determined high inflammatory response was associated with increased risk of CD. The many SNPs found in TLRs suggest that the host microbial composition or environmental factors in the gut are involved in risk of IBD in genetically susceptible individuals.
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- 2014
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17. Anti-TNF treatment response in rheumatoid arthritis patients is associated with genetic variation in the NLRP3-inflammasome.
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Sode J, Vogel U, Bank S, Andersen PS, Thomsen MK, Hetland ML, Locht H, Heegaard NH, and Andersen V
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- Antirheumatic Agents pharmacology, Antirheumatic Agents therapeutic use, Arthritis, Rheumatoid pathology, Female, Humans, Male, Middle Aged, NLR Family, Pyrin Domain-Containing 3 Protein, Signal Transduction drug effects, Smoking adverse effects, Treatment Outcome, Arthritis, Rheumatoid drug therapy, Arthritis, Rheumatoid genetics, Carrier Proteins genetics, Inflammasomes genetics, Molecular Targeted Therapy, Polymorphism, Single Nucleotide, Tumor Necrosis Factor-alpha metabolism
- Abstract
Objective: Many patients with rheumatoid arthritis (RA) benefit from tumor necrosis factor-α blocking treatment (anti-TNF), but about one third do not respond. The objective of this study was to replicate and extend previously found associations between anti-TNF treatment response and genetic variation in the TNF-, NF-κB- and pattern recognition receptor signalling pathways., Methods: Forty-one single nucleotide polymorphisms (SNPs), including 34 functional, in 28 genes involved in inflammatory pathways were assessed in 538 anti-TNF naive Danish RA patients with clinical data. Multivariable logistic regression analyses were performed to test associations between genotypes and treatment response at 3-6 months using the European League Against Rheumatism (EULAR) response criterion. American College of Rheumatology treatment response (ACR50) and relative change in 28-joint disease activity score (relDAS28) were used as secondary outcomes. Subgroup analyses were stratified according to smoking status, type of anti-TNF drug and IgM-Rheumatoid Factor (IgM-RF) status. False discovery rate (FDR) controlling was used to adjust for multiple testing., Results: Statistically significant associations with EULAR response were found for two SNPs in NLRP3(rs4612666) (OR (odds ratio) for good/moderate response = 0.64 (95% confidence interval: 0.44-0.95), p = 0.025, q = 0.95) and INFG(rs2430561) (OR = 0.40 (0.21-0.76), p = 0.005, q = 0.18) and among IgM-RF positive patients for TNFRS1A(rs4149570) (0.59 (0.36-0.98), p = 0.040, q = 0.76). Current smokers who carried the NLRP3(rs4612666) variant allele were less likely to benefit from anti-TNF treatment (OR = 0.24 (0.10-0.56), p = 0.001, q = 0.04)., Conclusions: In a population of Danish RA patients, we confirm the NLRP3 gene as associated with EULAR anti-TNF response as previously reported. The NLRP3 variant (T) allele is associated with lower treatment response, in particular among current smokers. Furthermore, we find that a functional polymorphism in the interferon-γ gene is associated with anti-TNF response. All findings should be tested by replication in independent validation cohorts and augmented by assessing cytokine levels and activities of the relevant gene products.
- Published
- 2014
- Full Text
- View/download PDF
18. Plasma testosterone, luteinizing hormone, and follicle-stimulating hormone after vasectomy.
- Author
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Johnsonbaugh RE, O'Connell K, Engel SB, Edson M, and Sode J
- Subjects
- Adult, Anesthesia, Local, Humans, Male, Radioimmunoassay, Time Factors, Follicle Stimulating Hormone blood, Luteinizing Hormone blood, Testosterone blood, Vasectomy
- Abstract
Plasma testosterone, LH, and FSH were measured in 24 healthy subjects prior to and after bilateral vasectomy. No significant changes were noted in any of the hormones 42 and 87 days after surgery; this indicated that normal testicular function persisted during the period of study.
- Published
- 1975
19. Hypogastrinemia in patients with lower esophageal sphincter incompetence.
- Author
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Lipshutz WH, Gaskins RD, Lukash WM, and Sode J
- Subjects
- Adult, Gastric Acidity Determination, Glycine pharmacology, Humans, Middle Aged, Pressure, Sodium Hydroxide pharmacology, Gastrins blood, Gastroesophageal Reflux blood
- Published
- 1974
20. The lack of influence of hemodilution perfusion on alterations in total body potassium.
- Author
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Clark RE, Beasley WE 3rd, Sode J, and Mills M
- Subjects
- Adolescent, Adult, Aged, Alkalosis etiology, Body Surface Area, Body Weight, Child, Erythrocyte Count, Erythrocytes analysis, Female, Heart Diseases surgery, Hematocrit, Humans, Male, Methods, Middle Aged, Osmolar Concentration, Perfusion, Potassium blood, Potassium urine, Potassium Isotopes, Thoracic Surgery, Thorax surgery, Whole-Body Counting, Plasma Substitutes, Potassium metabolism
- Published
- 1973
21. Carbohydrate metabolism in the baboon subjected to gram-negative (E. coli) septicemia. I. Hyperglycemia with depressed plasma insulin concentrations.
- Author
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Cryer PE, Herman CM, and Sode J
- Subjects
- 17-Hydroxycorticosteroids blood, Animals, Aspartate Aminotransferases blood, Blood Proteins analysis, Blood Urea Nitrogen, Carbon Dioxide blood, Catecholamines urine, Escherichia coli Infections blood, Escherichia coli Infections complications, Escherichia coli Infections physiopathology, Growth Hormone blood, Hematocrit, Insulin blood, Insulin Secretion, Male, Papio, Potassium blood, Sepsis blood, Sepsis complications, Sepsis physiopathology, Shock, Septic metabolism, Statistics as Topic, Thyroxine blood, Escherichia coli Infections metabolism, Hyperglycemia etiology, Insulin metabolism, Sepsis metabolism
- Published
- 1971
- Full Text
- View/download PDF
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