7 results on '"Shattuck, Milena R."'
Search Results
2. Evolution of vertebral numbers in primates, with a focus on hominoids and the last common ancestor of hominins and panins
- Author
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Spear, Jeffrey K., primary, Grabowski, Mark, additional, Sekhavati, Yeganeh, additional, Costa, Christina E., additional, Goldstein, Deanna M., additional, Petrullo, Lauren A., additional, Peterson, Amy L., additional, Lee, Amanda B., additional, Shattuck, Milena R., additional, Gómez-Olivencia, Asier, additional, and Williams, Scott A., additional
- Published
- 2023
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- View/download PDF
3. Ecology, longevity and naked mole-rats: confounding effects of sociality?
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Williams, Scott A. and Shattuck, Milena R.
- Published
- 2015
4. Arboreality has allowed for the evolution of increased longevity in mammals
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Shattuck, Milena R., Williams, Scott A., and Walker, Alan
- Published
- 2010
5. Evolutionary relationships of Macaca fascicularis fascicularis (Raffles 1821) (Primates: Cercopithecidae) from Singapore revealed by Bayesian analysis of mitochondrial DNA sequences
- Author
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Schillaci, Michael A., Klegarth, Amy R., Switzer, William M., Shattuck, Milena R., Lee, Benjamin P. Y-H., and Hollocher, Hope
- Subjects
Biodiversity ,Taxonomy - Abstract
Schillaci, Michael A., Klegarth, Amy R., Switzer, William M., Shattuck, Milena R., Lee, Benjamin P. Y-H., Hollocher, Hope (2017): Evolutionary relationships of Macaca fascicularis fascicularis (Raffles 1821) (Primates: Cercopithecidae) from Singapore revealed by Bayesian analysis of mitochondrial DNA sequences. Raffles Bulletin of Zoology 65: 3-19, DOI: http://doi.org/10.5281/zenodo.5355786, {"references":["Abdul-Latiff MAB, Ruslin F, Fui VV, Abu M-H, Rovie-Ryan JJ, Abdul-Patah P, Lakim M, Roos C, Yaakop S & Md-Zain BM (2014a) Phylogenetic relationships of Malaysia's longtailed macaques, Macaca fascicularis, based on cytochrome b sequences. Zookeys, 407: 121-139.","Abdul-Latiff MAB, Ruslin F, Faiq H, Hairul MS, Rovie-Ryan JJ, Abdul-Patah P, Yaakop S & Md-Zain BM (2014b) Continental monophyly and molecular divergence of peninsular Malaysia's Macaca fascicularis fascicularis. BioMed Research International Volume 2014, Article ID 897682, 18 pp.","Abegg C & Thierry B (2002) Macaque evolution and dispersal in insular South-east Asia. Biological Journal of the Linnean Society, 75: 555-576.","Alba DM, Delson E, Carnevale G, Colombero S, Delfino M, Giuntelli P, Pavia M & Pavia G (2014) First joint record of Mesopithecus and cf. Macaca in the Miocene of Europe. Journal of Human Evolution, 67: 1-18.","Badhan A, Eichstaedt CA, Almond NM, Knapp LA & Rose NJ (2015) Analysis of full-length mitochondrial DNA D-loop sequences from Macaca fascicularis of different geographical origin reveals novel haplotypes. Journal of Medical Primatology, 44: 125-136.","Bandelt H-J, Forster P & Rohl A (1999) Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution, 16: 37-48.","Bird MI, Fifield LK, Teh TS, Chang CH, Shirlaw N & Lambeck K (2007) An inflection in the rate of early mid-Holocene eustatic sea-level rise: a new sea-level curve from Singapore. Estuarine, Coastal and Shelf Science, 71: 523-536.","Blancher A, Bonhomme M, Crouau-Roy B, Terao K, Kitano T & Saitou N (2008) Mitochondrial DNA sequence phylogeny of 4 populations of the widely distributed cynomolgus macaque (Macaca fascicularis fascicularis) Journal of Heredity, 99: 254-264.","Bonhomme M, Blancher A, Cuartero S, Chikhi L & Crouau-Roy B (2008) Origin and number of founders in an introduced insular primate: estimation from nuclear genetic data. Molecular Ecology, 17: 1009-1019.","Bouckaert R, Heled J, Kuhnert D, Vaughan T, Wu CH, Xie D, Suchard MA, Rambaut A & Drummond AJ (2014) BEAST 2: a software platform for Bayesian evolutionary analysis. PLoS Computational Biology, 10(4), e1003537.","Buhay JE (2009) \"COI-like\" sequences are becoming problematic in molecular systematic and DNA barcoding studies. Journal of Crustacean Biology, 29: 96-110.","Bunlungsup S, Imai H, Hamada Y, Matsudaira K & Malaivijitnond S (2016a) Mitochondrial DNA and two Y-chromosome genes of common long-tailed macaques (Macaca fascicularis fascicularis) throughout Thailand and vicinity. American Journal of Primatology, (in press) doi 10.1002/ajp22596.","Bunlungsup S, Imai H, Hamada Y, Gumert MD, San AM & Malaivijitnond S (2016b) Morphological characteristics and genetic diversity of Burmese long- tailed Macaques (Macaca fascicularis aurea). American Journal of Primatology, 78: 441-455.","Darriba D, Taboada GL, Doallo R & Posada D (2012) jModelTest 2: more models, new heuristics and parallel computing. Nature Methods, 9: 772.","Delson E (1980) Fossil macaques, phyletic relationships and a scenario of deployment. In: Lindberg DG (ed.) The Macaques: Studies in ecology, behavior and evolution. van Nostrand Rheinhold, New York. Pp. 10-30.","ESRI® (2015) ArcGIS Desktop: Release 10.3. Redlands, CA: Environmental Systems Research Institute. http://www.esri.com/ software/arcgis/arcgisonline. (Accessed 16 November 2016).","Fooden J (1976) Provisional classifications and key to living species of macaques (Primates: Macaca). Folia Primatologica, 25: 225-236.","Fooden J (1995) Systematic review of southeast Asian longtail macaques, Macaca fascicularis (Raffles, 1821). Fieldiana Zoology, 81: 1-206.","Fooden J (2006) Comparative review of fascicularis-group species of macaques (Primates: Macaca). Fieldiana Zoology, 107: 1-43.","Hasan MK, Feeroz MM, Jones- Engel L, Engel GA, Kanthaswamy S & Smith DG (2014) Diversity and molecular phylogeny of mitochondrial DNA of rhesus macaques (Macaca mulatta) in Bangladesh. American Journal of Primatology, 76: 1094-1104.","Harihara S, Saitou N, Hirai M, Aoto N, Terao K, Cho F, Honjo S & Omoto K (1988) Differentiation of mitochondrial DNA types in Macaca fascicularis. Primates, 29: 117-127.","Harrison T, Krigbaum J & Manser J (2006) Primate biogeography and ecology on the Sunda Shelf Islands: a paleontological and zooarchaeological perspective. In: Lehman SM & Fleagle JG (eds.) Primate Biogeography. Springer, New York. Pp. 331-372.","Ho SY, Phillips MJ, Cooper A & Drummond AJ (2005) Time dependency of molecular rate estimates and systematic overestimation of recent divergence times. Molecular Biology and Evolution, 22(7): 1561-1568.","Hooijer DA (1962) Quaternary langurs and macaques from the Malay archipelago. Zoologische Verhandelingen Uitgegeven door het Rijksmuseum van Natuurlijke Historie te Leiden, 55: 1-64.","Ingman M, Kaessmann H, Paabo S & Gyllensten U (2000) Mitochondrial genome variation and the origin of modern humans. Nature, 408: 708-713.","Joordens JCA, d'Errico F, Wesselingh FP, Munro S, de Vos J, Wallinga J, Ankjaergaard C, Reimann T, Wijbrans JR, Kuiper KF, Mucher HJ, Coqueugniot H, Prie V, Joosten I, van Os B, Schulp AS, Panuel M, van der Haas V, Lustenhouwer W, Reijmer JJG & Roebroeks W (2015) Homo erectus at Trinil on Java used shells for tool production and engraving. Nature, 518: 228-231.","Katoh K, Misawa K, Kuma K-I & Miyata T (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research, 30: 3059-3066.","Kawamoto Y, Ischak TM & Supriatna J (1984) Genetic variations within and between troops of the crab-eating macaque (Macaca fascicularis) on Sumatra, Java, Bali, Lombok and Sumbawa, Indonesia. Primates, 25: 131-159.","Kawamoto Y, Kawamoto S, Matsubayashi K, Nozawa K, Watanabe T, Stanley M-A & Perwitasari-Farajallah D (2008) Genetic diversity of long-tailed macaques (Macaca fascicularis) on the island of Mauritius: an assessment of nuclear and mitochondrial DNA polymorphisms. Journal of Medical Primatology, 37: 45-54.","Kondo M, Kawamoto Y, Nozawa K, Matsubayashi K, Watanabe T, Griffiths O & Stanley M-A (1993) Population genetics of crab-eating macaques (Macaca fascicularis) on the island of Mauritius. American Journal of Primatology, 29: 167-182.","Knaus BJ, Cronn R, Liston A, Pilgrim K & Schwartz M K (2011) Mitochondrial genome sequences illuminate maternal lineages of conservation concern in a rare carnivore. BMC Ecology, 11(1): 10.","Lawler SH, Sussman RW & Taylor LL (1995) Mitochondrial DNA of the Mauritian macaques (Macaca fascicularis): an example of the founder effect. American Journal of Physical Anthropology, 96: 133-141.","Liedigk R, Kolleck J, Boker KO, Meijaard E, Md-Zain BM, Abdul- Latiff MAB, Ampeng A, Lakim M, Abdul-Patah P, Tosi AJ, Brameier M, Zinner D & Roos C (2015) Mitogenomic phylogeny of the common long-tailed macaque (Macaca fascicularis fascicularis). BMC Genomics, 16(1): 222.","Leonard JA, den Tex RJ, Hawkins MTR, Munoz- Fuentes V, Thorington R & Maldonado JE (2015) Phylogeography of vertebrates on the Sunda Shelf: a multi- species comparison. Journal of Biogeography, 42: 871-879.","Lopez JV, Yuhki N, Masuda R, Modi W & O'Brien SJ (1994) Numt, a recent transfer and tandem amplification of mitochondrial DNA to the nuclear genome of the domestic cat. Journal of Molecular Evolution, 39: 174-190.","Perwitasari-Farajallah D, Kawamoto Y, Kyes RC, Lelana RPA & Sajuthi D (2001) Genetic characterization of long-tailed macaques (Macaca fascicularis) on Tabuan Island, Indonesia. Primates, 42: 141-152.","Pozzi L, Hodgson JA, Burrell AS, Sterner KN, Raaum RL & Disotell TR (2014) Primate phylogenetic relationships and divergence dates inferred from complete mitochondrial genomes. Molecular Phylogenetics and Evolution, 75: 165-183.","Raffles TS (1821) XVII. Descriptive catalogue of a zoological collection, made on account of the honourable East India Company, in the island of Sumatra and its vicinity, under the direction of sir Thomas Stamford Raffles, Lieutenant- Governor of Fort Marlborough; with additional notices illustrative of the natural history of those countries. Transactions of the Linnean Society of London, 13(1): 239-274.","Schillaci MA, Jones- Engel L, Lee BPY-H, Fuentes A, Aggimarangsee N, Engel GA & Sutthipat T (2007) Morphology and somatometric growth of long- tailed macaques (Macaca fascicularis fascicularis) in Singapore. Biological Journal of the Linnean Society, 92: 675-694.","Schillaci MA, Saravia S, Lee BPY-H & Matheson C (2011) Preliminary report on mitochondrial DNA variation in Macaca fascicularis from Singapore. Raffles Bulletin of Zoology, 59: 101-108.","Schmidt HA, Strimmer K, Vingron M & von Haeseler A (2002) TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics, 18: 502-504.","Sha JCM, Gumert MD, Lee BPY-H, Fuentes A, Rajathurai S, Chan S & Jones-Engel L (2009) Status of the long-tailed macaque Macaca fascicularis in Singapore and implications for management. Biodiversity and Conservation, 18: 2909-2926.","Shiina T, Tanaka K, Katsuyama Y, Otabe K, Sakamoto K, Kurata M, Nomura M, Yamanaka H, Nakagawa H, Inoko H & Ota M (2010) Mitochondrial DNA diversity among three subpopulations of cynomolgus macaques (Macaca fascicularis) originating from the Indochinese region. Experimental Animals, 59: 567-578.","Smith DG, McDonough JW & George DA (2007) Mitochondrial DNA variation within and among regional populations of longtail macaques (Macaca fascicularis) in relation to other species of the fascicularis group of macaques. American Journal of Primatology, 69: 182-198.","Smith DG, Ng J, George D, Trask JS, Houghton P, Singh B, Villano J & Kanthaswamy S (2014) A genetic comparison of two alleged subspecies of Philippine cynomolgus macaques. American Journal of Physical Anthropology, 155: 136-148.","Stevison LS & Kohn MH (2008) Determining genetic background in captive stocks of cynomolgus macaques (Macaca fascicularis). Journal of Medical Primatology, 37: 311-317.","Stremme H (1911) Die Saugetiere mit Ausnahme der proboscidier. In: Selenka L & Blanckenhorn MLP (eds.) Die Pithecanthropusschichten auf Java. Wilhelm Engelmann, Leipzig. Pp. 82-150.","Sussman RW & Tattersall I (1981) Behavior and ecology of Macaca fascicularis in Mauritius: a preliminary study. Primates, 22: 192-205.","Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123: 585-595.","Takai, M, Zhang Y, Kono RT & Jin C (2014) Changes in the composition of the Pleistocene primate fauna in southern China. Quaternary International 354: 75-85. http://dx.doi.org/10.1016/j. quaint.2014.02.021. (Accessed 28 November 2016).","Tamura K, Stecher G, Peterson D, Filipski A & Kumar S (2013) MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Molecular Biology and Evolution, 30: 2725-2729.","Tosi AJ & Coke CS (2007) Comparative phylogenetics offer new insights into biogeographic history of Macaca fascicularis and the origin of the Mauritian macaques. Molecular Phylogenetics and Evolution, 42: 498-504.","Tosi AJ, Morales JC & Melnick DJ (2002) Y-chromosome and mitochondrial markers in Macaca fascicularis indicate introgression with Indochinese M. mulatta and a biogeographic barrier in the Isthmus of Kra. International Journal of Primatology, 23: 161-178.","Tosi AJ, Morales JC & Melnick DJ (2003) Parental, maternal, and biparental molecular markers provide unique windows onto the evolutionary history of macaque monkeys. Evolution, 57: 1419-1435.","Wheeler DL, Church DM, Federhen S, Lash AE, Madden TL, Pontius JU, Schuler GD, Schriml LM, Sequeira E, Tatusova TA & Wagner L (2003) Database resources of the National Center for Biotechnology. Nucleic Acids Research, 31: 28-33."]}
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- 2017
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6. Patterns of Admixture and Population Structure in Native Populations of Northwest North America
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Verdu, Paul, primary, Pemberton, Trevor J., additional, Laurent, Romain, additional, Kemp, Brian M., additional, Gonzalez-Oliver, Angelica, additional, Gorodezky, Clara, additional, Hughes, Cris E., additional, Shattuck, Milena R., additional, Petzelt, Barbara, additional, Mitchell, Joycelynn, additional, Harry, Harold, additional, William, Theresa, additional, Worl, Rosita, additional, Cybulski, Jerome S., additional, Rosenberg, Noah A., additional, and Malhi, Ripan S., additional
- Published
- 2014
- Full Text
- View/download PDF
7. Patterns of genetic variation and the role of selection in HTR1A and HTR1B in macaques (Macaca).
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Shattuck, Milena R., Satkoski-Trask, Jessica, Deinard, Amos, Tito, Raul Y., Smith, David G., Melnick, Don J., and Malhi, Ripan S.
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SEROTONIN , *MACAQUES , *MEDICAL research , *SEROTONIN receptors , *BIOLOGICAL divergence , *HUMAN genetic variation - Abstract
Background Research has increasingly highlighted the role of serotonin in behavior. However, few researchers have examined serotonin in an evolutionary context, although such research could provide insight into the evolution of important behaviors. The genus Macaca represents a useful model to address this, as this genus shows a wide range of behavioral variation. In addition, many genetic features of the macaque serotonin system are similar to those of humans, and as common models in biomedical research, knowledge of the genetic variation and evolution of serotonin functioning in macaques are particularly relevant for studies of human evolution. Here, we examine the role of selection in the macaque serotonin system by comparing patterns of genetic variation for two genes that code for two types of serotonin receptors - HTR1A and HTR1B - across five species of macaques. Results The pattern of variation is significantly different for HTR1A compared to HTR1B. Specifically, there is an increase in between-species variation compared to within-species variation for HTR1A. Phylogenetic analyses indicate that portions of HTR1A show an elevated level of nonsynonymous substitutions. Together these analyses are indicative of positive selection acting on HTR1A, but not HTR1B. Furthermore, the haplotype network for HTR1A is inconsistent with the species tree, potentially due to both deep coalescence and selection. Conclusions The results of this study indicate distinct evolutionary histories for HTR1A and HTR1B, with HTR1A showing evidence of selection and a high level of divergence among species, a factor which may have an impact on biomedical research that uses these species as models. The wide genetic variation of HTR1A may also explain some of the species differences in behavior, although further studies on the phenotypic effect of the sequenced polymorphisms are needed to confirm this. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
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