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Let $\mathcal{H}$ be a graph class and $k\in\mathbb{N}$. We say a graph $G$ admits a \emph{$k$-identification to $\mathcal{H}$} if there is a partition $\mathcal{P}$ of some set $X\subseteq V(G)$ of size at most $k$ such that after identifying each part in $\mathcal{P}$ to a single vertex, the resulting graph belongs to $\mathcal{H}$. The graph parameter ${\sf id}_{\mathcal{H}}$ is defined so that ${\sf id}_{\mathcal{H}}(G)$ is the minimum $k$ such that $G$ admits a $k$-identification to $\mathcal{H}$, and the problem of \textsc{Identification to $\mathcal{H}$} asks, given a graph $G$ and $k\in\mathbb{N}$, whether ${\sf id}_{\mathcal{H}}(G)\le k$. If we set $\mathcal{H}$ to be the class $\mathcal{F}$ of acyclic graphs, we generate the problem \textsc{Identification to Forest}, which we show to be {\sf NP}-complete. We prove that, when parameterized by the size $k$ of the identification set, it admits a kernel of size $2k+1$. For our kernel we reveal a close relation of \textsc{Identification to Forest} with the \textsc{Vertex Cover} problem. We also study the combinatorics of the \textsf{yes}-instances of \textsc{Identification to $\mathcal{H}$}, i.e., the class $\mathcal{H}^{(k)}:=\{G\mid {\sf id}_{\mathcal{H}}(G)\le k\}$, {which we show to be minor-closed for every $k$} when $\mathcal{H}$ is minor-closed. We prove that the minor-obstructions of $\mathcal{F}^{(k)}$ are of size at most $2k+4$. We also prove that every graph $G$ such that ${\sf id}_{\mathcal{F}}(G)$ is sufficiently big contains as a minor either a cycle on $k$ vertices, or $k$ disjoint triangles, or the \emph{$k$-marguerite} graph, that is the graph obtained by $k$ disjoint triangles by identifying one vertex of each of them into the same vertex., Comment: 18 pages, 5 figures

Given integers $k,c > 0$, we say that a digraph $D$ is $(k,c)$-linked if for every pair of ordered sets $\{s_1, \ldots, s_k\}$ and $\{t_1, \ldots, t_k\}$ of vertices of $D$, there are $P_1, \ldots, P_k$ such that for $i \in [k]$ each $P_i$ is a path from $s_i$ to $t_i$ and every vertex of $D$ appears in at most $c$ of those paths. Thomassen [Combinatorica, 1991] showed that for every fixed $k \geq 2$ there is no integer $p$ such that every $p$-strong digraph is $(k,1)$-linked. Edwards et al. [ESA, 2017] showed that every digraph $D$ with directed treewidth at least some function $f(k)$ contains a large bramble of congestion $2$ and that every $(36k^3 + 2k)$-strong digraph containing a bramble of congestion $2$ and size roughly $188k^3$ is $(k,2)$-linked. Since the directed treewidth of a digraph has to be at least its strong connectivity, this implies that there is a function $L(k)$ such that every $L(k)$-strong digraph is $(k,2)$-linked. This result was improved by Campos et al. [ESA, 2023], who showed that any $k$-strong digraph containing a bramble of size at least $2k(c\cdot k -c + 2) + c(k-1)$ and congestion $c$ is $(k,c)$-linked. Regarding the bramble, although the given bound on $f(k)$ is very large, Masa\v{r}\'ik et al. [SIDMA, 2022] showed that directed treewidth $\mathcal{O}(k^{48}\log^{13} k)$ suffices if the congestion is relaxed to $8$. We first show how to drop the dependence on $c$, for even $c$, on the size of the bramble that is needed in the work of Campos et al. [ESA, 2023]. Then, by making two local changes in the proof of Masa\v{r}\'ik et al. [SIDMA, 2022] we show how to build in polynomial time a bramble of size $k$ and congestion $8$ assuming that a large obstruction to directed treewidth (namely, a path system) is given. Applying these results, we show that there is a polynomial function $g(k)$ such that every $g(k)$-strong digraph is $(k,8)$-linked.

A good edge-labeling (gel for short) of a graph $G$ is a function $\lambda: E(G) \to \mathbb{R}$ such that, for any ordered pair of vertices $(x, y)$ of $G$, there do not exist two distinct increasing paths from $x$ to $y$, where ``increasing'' means that the sequence of labels is non-decreasing. This notion was introduced by Bermond et al. [Theor. Comput. Sci. 2013] motivated by practical applications arising from routing and wavelength assignment problems in optical networks. Prompted by the lack of algorithmic results about the problem of deciding whether an input graph admits a gel, called GEL, we initiate its study from the viewpoint of parameterized complexity. We first introduce the natural version of GEL where one wants to use at most $c$ distinct labels, which we call $c$-GEL, and we prove that it is NP-complete for every $c \geq 2$ on very restricted instances. We then provide several positive results, starting with simple polynomial kernels for GEL and $c$-\GEL parameterized by neighborhood diversity or vertex cover. As one of our main technical contributions, we present an FPT algorithm for GEL parameterized by the size of a modulator to a forest of stars, based on a novel approach via a 2-SAT formulation which we believe to be of independent interest. We also present FPT algorithms based on dynamic programming for $c$-GEL parameterized by treewidth and $c$, and for GEL parameterized by treewidth and the maximum degree. Finally, we answer positively a question of Bermond et al. [Theor. Comput. Sci. 2013] by proving the NP-completeness of a problem strongly related to GEL, namely that of deciding whether an input graph admits a so-called UPP-orientation., Comment: 46 pages, 16 figures

Given a graph $G$ and a vertex set $X$, the annotated treewidth tw$(G,X)$ of $X$ in $G$ is the maximum treewidth of an $X$-rooted minor of $G$, i.e., a minor $H$ where the model of each vertex of $H$ contains some vertex of $X$. That way, tw$(G,X)$ can be seen as a measure of the contribution of $X$ to the tree-decomposability of $G$. We introduce the logic CMSO/tw as the fragment of monadic second-order logic on graphs obtained by restricting set quantification to sets of bounded annotated treewidth. We prove the following Algorithmic Meta-Theorem (AMT): for every non-trivial minor-closed graph class, model checking for CMSO/tw formulas can be done in quadratic time. Our proof works for the more general CMSO/tw+dp logic, that is CMSO/tw enhanced by disjoint-path predicates. Our AMT can be seen as an extension of Courcelle's theorem to minor-closed graph classes where the bounded-treewidth condition in the input graph is replaced by the bounded-treewidth quantification in the formulas. Our results yield, as special cases, all known AMTs whose combinatorial restriction is non-trivial minor-closedness.

For a fixed graph $H$, the $H$-SUBGRAPH HITTING problem consists in deleting the minimum number of vertices from an input graph to obtain a graph without any occurrence of $H$ as a subgraph. This problem can be seen as a generalization of VERTEX COVER, which corresponds to the case $H = K_2$. We initiate a study of $H$-SUBGRAPH HITTING from the point of view of characterizing structural parameterizations that allow for polynomial kernels, within the recently active framework of taking as the parameter the number of vertex deletions to obtain a graph in a "simple" class $C$. Our main contribution is to identify graph parameters that, when $H$-SUBGRAPH HITTING is parameterized by the vertex-deletion distance to a class $C$ where any of these parameters is bounded, and assuming standard complexity assumptions and that $H$ is biconnected, allow us to prove the following sharp dichotomy: the problem admits a polynomial kernel if and only if $H$ is a clique. These new graph parameters are inspired by the notion of $C$-elimination distance introduced by Bulian and Dawar [Algorithmica 2016], and generalize it in two directions. Our results also apply to the version of the problem where one wants to hit $H$ as an induced subgraph, and imply in particular, that the problems of hitting minors and hitting (induced) subgraphs have a substantially different behavior with respect to the existence of polynomial kernels under structural parameterizations., Comment: 58 pages, 7 figures

We revisit a graph width parameter that we dub bipartite treewidth, along with its associated graph decomposition that we call bipartite tree decomposition. Bipartite treewidth can be seen as a common generalization of treewidth and the odd cycle transversal number. Intuitively, a bipartite tree decomposition is a tree decomposition whose bags induce almost bipartite graphs and whose adhesions contain at most one vertex from the bipartite part of any other bag, while the width of such decomposition measures how far the bags are from being bipartite. Adapted from a tree decomposition originally defined by Demaine, Hajiaghayi, and Kawarabayashi [SODA 2010] and explicitly defined by Tazari [Th. Comp. Sci. 2012], bipartite treewidth appears to play a crucial role for solving problems related to odd-minors, which have recently attracted considerable attention. As a first step toward a theory for solving these problems efficiently, the main goal of this paper is to develop dynamic programming techniques to solve problems on graphs of small bipartite treewidth. For such graphs, we provide a number of para-NP-completeness results, FPT-algorithms, and XP-algorithms, as well as several open problems. In particular, we show that $K_t$-Subgraph-Cover, Weighted Vertex Cover/Independent Set, Odd Cycle Transversal, and Maximum Weighted Cut are $FPT$ parameterized by bipartite treewidth. We provide the following complexity dichotomy when $H$ is a 2-connected graph, for each of $H$-Subgraph-Packing, $H$-Induced-Packing, $H$-Scattered-Packing, and $H$-Odd-Minor-Packing problem: if $H$ is bipartite, then the problem is para-NP-complete parameterized by bipartite treewidth while, if $H$ is non-bipartite, then it is solvable in XP-time. We define 1-${\cal H}$-treewidth by replacing the bipartite graph class by any class ${\cal H}$. Most of the technology developed here works for this more general parameter., Comment: Presented in IPEC 2023

Given a digraph $D=(V,A)$ on $n$ vertices and a vertex $v\in V$, the cycle-degree of $v$ is the minimum size of a set $S \subseteq V(D) \setminus \{v\}$ intersecting every directed cycle of $D$ containing $v$. From this definition of cycle-degree, we define the $c$-degeneracy (or cycle-degeneracy) of $D$, which we denote by $\delta^*_c(D)$. It appears to be a nice generalisation of the undirected degeneracy. In this work, using this new definition of cycle-degeneracy, we extend several evidences for Cereceda's conjecture to digraphs. The $k$-dicolouring graph of $D$, denoted by $\mathcal{D}_k(D)$, is the undirected graph whose vertices are the $k$-dicolourings of $D$ and in which two $k$-dicolourings are adjacent if they differ on the colour of exactly one vertex. We show that $\mathcal{D}_k(D)$ has diameter at most $O_{\delta^*_c(D)}(n^{\delta^*_c(D) + 1})$ (respectively $O(n^2)$ and $(\delta^*_c(D)+1)n$) when $k$ is at least $\delta^*_c(D)+2$ (respectively $\frac{3}{2}(\delta^*_c(D)+1)$ and $2(\delta^*_c(D)+1)$). This improves known results on digraph redicolouring (Bousquet et al.). Next, we extend a result due to Feghali to digraphs, showing that $\mathcal{D}_{d+1}(D)$ has diameter at most $O_{d,\epsilon}(n(\log n)^{d-1})$ when $D$ has maximum average cycle-degree at most $d-\epsilon$. We then show that two proofs of Bonamy and Bousquet for undirected graphs can be extended to digraphs. The first one uses the digrundy number of a digraph and the second one uses the $\mathscr{D}$-width. Finally, we give a general theorem which makes a connection between the recolourability of a digraph $D$ and the recolourability of its underlying graph $UG(D)$. This result directly extends a number of results on planar graph recolouring to planar digraph redicolouring.

We present new min-max relations in digraphs between the number of paths satisfying certain conditions and the order of the corresponding cuts. We define these objects in order to capture, in the context of solving the half-integral linkage problem, the essential properties needed for reaching a large bramble of congestion two (or any other constant) from the terminal set. This strategy has been used ad-hoc in several articles, usually with lengthy technical proofs, and our objective is to abstract it to make it applicable in a simpler and unified way. We provide two proofs of the min-max relations, one consisting in applying Menger's Theorem on appropriately defined auxiliary digraphs, and an alternative simpler one using matroids, however with worse polynomial running time. As an application, we manage to simplify and improve several results of Edwards et al. [ESA 2017] and of Giannopoulou et al. [SODA 2022] about finding half-integral linkages in digraphs. Concerning the former, besides being simpler, our proof provides an almost optimal bound on the strong connectivity of a digraph for it to be half-integrally feasible under the presence of a large bramble of congestion two (or equivalently, if the directed tree-width is large, which is the hard case). Concerning the latter, our proof uses brambles as rerouting objects instead of cylindrical grids, hence yielding much better bounds and being somehow independent of a particular topology. We hope that our min-max relations will find further applications as, in our opinion, they are simple, robust, and versatile to be easily applicable to different types of routing problems in digraphs.

Let ${\cal G}$ be a minor-closed graph class and let $G$ be an $n$-vertex graph. We say that $G$ is a $k$-apex of ${\cal G}$ if $G$ contains a set $S$ of at most $k$ vertices such that $G\setminus S$ belongs to ${\cal G}$. Our first result is an algorithm that decides whether $G$ is a $k$-apex of ${\cal G}$ in time $2^{{\sf poly}(k)}\cdot n^2$, where ${\sf poly}$ is a polynomial function depending on ${\cal G}$. This algorithm improves the previous one, given by Sau, Stamoulis, and Thilikos [ICALP 2020], whose running time was $2^{{\sf poly}(k)}\cdot n^3$. The elimination distance of $G$ to ${\cal G}$, denoted by ${\sf ed}_{\cal G}(G)$, is the minimum number of rounds required to reduce each connected component of $G$ to a graph in ${\cal G}$ by removing one vertex from each connected component in each round. Bulian and Dawar [Algorithmica 2017] provided an FPT-algorithm, with parameter $k$, to decide whether ${\sf ed}_{\cal G}(G)\leq k$. However, its dependence on $k$ is not explicit. We extend the techniques used in the first algorithm to decide whether ${\sf ed}_{\cal G}(G)\leq k$ in time $2^{2^{2^{{\sf poly}(k)}}}\cdot n^2$. This is the first algorithm for this problem with an explicit parametric dependence in $k$. In the special case where ${\cal G}$ excludes some apex-graph as a minor, we give two alternative algorithms, running in time $2^{2^{{\cal O}(k^2\log k)}}\cdot n^2$ and $2^{{\sf poly}(k)}\cdot n^3$ respectively, where $c$ and ${\sf poly}$ depend on ${\cal G}$. As a stepping stone for these algorithms, we provide an algorithm that decides whether ${\sf ed}_{\cal G}(G)\leq k$ in time $2^{{\cal O}({\sf tw}\cdot k+{\sf tw}\log{\sf tw})}\cdot n$, where ${\sf tw}$ is the treewidth of $G$. Finally, we provide explicit upper bounds on the size of the graphs in the minor-obstruction set of the class of graphs ${\cal E}_k({\cal G})=\{G\mid{\sf ed}_{\cal G}(G)\leq k\}$., Comment: 75 pages. TheoretiCS journal article. Abstract abbreviated to fit arXiv limitation

The CONTRACTION(vc) problem takes as input a graph $G$ on $n$ vertices and two integers $k$ and $d$, and asks whether one can contract at most $k$ edges to reduce the size of a minimum vertex cover of $G$ by at least $d$. Recently, Lima et al. [JCSS 2021] proved, among other results, that unlike most of the so-called blocker problems, CONTRACTION(vc) admits an XP algorithm running in time $f(d) \cdot n^{O(d)}$. They left open the question of whether this problem is FPT under this parameterization. In this article, we continue this line of research and prove the following results: 1. CONTRACTION(vc) is W[1]-hard parameterized by $k + d$. Moreover, unless the ETH fails, the problem does not admit an algorithm running in time $f(k + d) \cdot n^{o(k + d)}$ for any function $f$. In particular, this answers the open question stated in Lima et al. [JCSS 2021] in the negative. 2. It is NP-hard to decide whether an instance $(G, k, d)$ of CONTRACTION(vc) is a yes-instance even when $k = d$, hence enhancing our understanding of the classical complexity of the problem. 3. CONTRACTION(vc) can be solved in time $2^{O(d)} \cdot n^{k - d + O(1)}$. This XP algorithm improves the one of Lima et al. [JCSS 2021], which uses Courcelle's theorem as a subroutine and hence, the $f(d)$-factor in the running time is non-explicit and probably very large. On the other hard, it shows that when $k=d$, the problem is FPT parameterized by $d$ (or by $k$)., Comment: 35 pages, 5 figures

We introduce a novel model-theoretic framework inspired from graph modification and based on the interplay between model theory and algorithmic graph minors. The core of our framework is a new compound logic operating with two types of sentences, expressing graph modification: the modulator sentence, defining some property of the modified part of the graph, and the target sentence, defining some property of the resulting graph. In our framework, modulator sentences are in counting monadic second-order logic (CMSOL) and have models of bounded treewidth, while target sentences express first-order logic (FOL) properties along with minor-exclusion. Our logic captures problems that are not definable in first-order logic and, moreover, may have instances of unbounded treewidth. Also, it permits the modeling of wide families of problems involving vertex/edge removals, alternative modulator measures (such as elimination distance or $\mathcal{G}$-treewidth), multistage modifications, and various cut problems. Our main result is that, for this compound logic, model-checking can be done in quadratic time. All derived algorithms are constructive and this, as a byproduct, extends the constructibility horizon of the algorithmic applications of the Graph Minors theorem of Robertson and Seymour. The proposed logic can be seen as a general framework to capitalize on the potential of the irrelevant vertex technique. It gives a way to deal with problem instances of unbounded treewidth, for which Courcelle's theorem does not apply. The proof of our meta-theorem combines novel combinatorial results related to the Flat Wall theorem along with elements of the proof of Courcelle's theorem and Gaifman's theorem. We finally prove extensions where the target property is expressible in FOL+DP, i.e., the enhancement of FOL with disjoint-paths predicates.

We study three problems introduced by Bang-Jensen and Yeo [Theor. Comput. Sci. 2015] and by Bang-Jensen, Havet, and Yeo [Discret. Appl. Math. 2016] about finding disjoint "balanced" spanning rooted substructures in graphs and digraphs, which generalize classic packing problems. Namely, given a positive integer $k$, a digraph $D=(V,A)$, and a root $r \in V$, we consider the problem of finding two arc-disjoint $k$-safe spanning $r$-arborescences and the problem of finding two arc-disjoint $(r,k)$-flow branchings. We show that both these problems are FPT with parameter $k$, improving on existing XP algorithms. The latter of these results answers a question of Bang-Jensen, Havet, and Yeo [Discret. Appl. Math. 2016]. Further, given an integer $k$, a graph $G=(V,E)$, and $r \in V$, we consider the problem of finding two arc-disjoint $(r,k)$-safe spanning trees. We show that this problem is also FPT with parameter $k$, again improving on a previous XP algorithm. Our main technical contribution is to prove that the existence of such spanning substructures is equivalent to the existence of substructures with size and maximum (out-)degree both bounded by a (linear or quadratic) function of $k$, which may be of independent interest., Comment: 20 pages, 1 figure

For a finite collection of graphs ${\cal F}$, the ${\cal F}$-M-DELETION problem consists in, given a graph $G$ and an integer $k$, decide whether there exists $S \subseteq V(G)$ with $|S| \leq k$ such that $G \setminus S$ does not contain any of the graphs in ${\cal F}$ as a minor. We are interested in the parameterized complexity of ${\cal F}$-M-DELETION when the parameter is the treewidth of $G$, denoted by $tw$. Our objective is to determine, for a fixed ${\cal F}$, the smallest function $f_{{\cal F}}$ such that ${\cal F}$-M-DELETION can be solved in time $f_{{\cal F}}(tw) \cdot n^{O(1)}$ on $n$-vertex graphs. We provide lower bounds under the ETH on $f_{{\cal F}}$ for several collections ${\cal F}$. We first prove that for any ${\cal F}$ containing connected graphs of size at least two, $f_{{\cal F}}(tw)= 2^{\Omega(tw)}$, even if the input graph $G$ is planar. Our main contribution consists of superexponential lower bounds for a number of collections ${\cal F}$, inspired by a reduction of Bonnet et al.~[IPEC, 2017]. In particular, we prove that when ${\cal F}$ contains a single connected graph $H$ that is either $P_5$ or is not a minor of the banner (that is, the graph consisting of a $C_4$ plus a pendent edge), then $f_{{\cal F}}(tw)= 2^{\Omega(tw \cdot \log tw)}$. This is the third of a series of articles on this topic, and the results given here together with other ones allow us, in particular, to provide a tight dichotomy on the complexity of $\{H\}$-M-DELETION, in terms of $H$, when $H$ is connected., Comment: 41 pages, 20 figures. arXiv admin note: substantial text overlap with arXiv:1907.04442, arXiv:1704.07284

For a finite collection of graphs ${\cal F}$, the ${\cal F}$-M-DELETION (resp. ${\cal F}$-TM-DELETION) problem consists in, given a graph $G$ and an integer $k$, decide whether there exists $S \subseteq V(G)$ with $|S| \leq k$ such that $G \setminus S$ does not contain any of the graphs in ${\cal F}$ as a minor (resp. topological minor). We are interested in the parameterized complexity of both problems when the parameter is the treewidth of $G$, denoted by $tw$, and specifically in the cases where ${\cal F}$ contains a single connected planar graph $H$. We present algorithms running in time $2^{O(tw)} \cdot n^{O(1)}$, called single-exponential, when $H$ is either $P_3$, $P_4$, $C_4$, the paw, the chair, and the banner for both $\{H\}$-M-DELETION and $\{H\}$-TM-DELETION, and when $H=K_{1,i}$, with $i \geq 1$, for $\{H\}$-TM-DELETION. Some of these algorithms use the rank-based approach introduced by Bodlaender et al. [Inform Comput, 2015]. This is the second of a series of articles on this topic, and the results given here together with other ones allow us, in particular, to provide a tight dichotomy on the complexity of $\{H\}$-M-DELETION in terms of $H$., Comment: 36 pages, 2 figures

Let $\mathcal{G}$ be a minor-closed graph class. We say that a graph $G$ is a $k$-apex of $\mathcal{G}$ if $G$ contains a set $S$ of at most $k$ vertices such that $G\setminus S$ belongs to $\mathcal{G}.$ We denote by $\mathcal{A}_k (\mathcal{G})$ the set of all graphs that are $k$-apices of $\mathcal{G}.$ We prove that every graph in the obstruction set of $\mathcal{A}_k (\mathcal{G}),$ i.e., the minor-minimal set of graphs not belonging to $\mathcal{A}_k (\mathcal{G}),$ has size at most $2^{2^{2^{2^{\mathsf{poly}(k)}}}},$ where $\mathsf{poly}$ is a polynomial function whose degree depends on the size of the minor-obstructions of $\mathcal{G}.$ This bound drops to $2^{2^{\mathsf{poly}(k)}}$ when $\mathcal{G}$ excludes some apex graph as a minor., Comment: 48 pages and 12 figures. arXiv admin note: text overlap with arXiv:2004.12692

We introduce a supporting combinatorial framework for the Flat Wall Theorem. In particular, we suggest two variants of the theorem and we introduce a new, more versatile, concept of wall homogeneity as well as the notion of regularity in flat walls. All proposed concepts and results aim at facilitating the use of the irrelevant vertex technique in future algorithmic applications., Comment: arXiv admin note: text overlap with arXiv:2004.12692

A blocking set in a graph $G$ is a subset of vertices that intersects every maximum independent set of $G$. Let ${\sf mmbs}(G)$ be the size of a maximum (inclusion-wise) minimal blocking set of $G$. This parameter has recently played an important role in the kernelization of Vertex Cover parameterized by the distance to a graph class ${\cal F}$. Indeed, it turns out that the existence of a polynomial kernel for this problem is closely related to the property that ${\sf mmbs}({\cal F})=\sup_{G \in {\cal F}}{\sf mmbs}(G)$ is bounded by a constant, and thus several recent results focused on determining ${\sf mmbs}({\cal F})$ for different classes ${\cal F}$. We consider the parameterized complexity of computing ${\sf mmbs}$ under various parameterizations, such as the size of a maximum independent set of the input graph and the natural parameter. We provide a panorama of the complexity of computing both ${\sf mmbs}$ and ${\sf mmhs}$, which is the size of a maximum minimal hitting set of a hypergraph, a closely related parameter. Finally, we consider the problem of computing ${\sf mmbs}$ parameterized by treewidth, especially relevant in the context of kernelization. Given the "counting" nature of ${\sf mmbs}$, it does not seem to be expressible in monadic second-order logic, hence its tractability does not follow from Courcelle's theorem. Our main technical contribution is a fixed-parameter tractable algorithm for this problem., Comment: 39 pages, 5 figures

In the Maximum Minimal Vertex Cover (MMVC) problem, we are given a graph $G$ and a positive integer $k$, and the objective is to decide whether $G$ contains a minimal vertex cover of size at least $k$. Motivated by the kernelization of MMVC with parameter $k$, our main contribution is to introduce a simple general framework to obtain kernelization lower bounds for a certain type of kernels for optimization problems, which we call lop-kernels. Informally, this type of kernels is required to preserve large optimal solutions in the reduced instance, and captures the vast majority of existing kernels in the literature. As a consequence of this framework, we show that the trivial quadratic kernel for MMVC is essentially optimal, answering a question of Boria et al. [Discret. Appl. Math. 2015], and that the known cubic kernel for Maximum Minimal Feedback Vertex Set is also essentially optimal. We present further applications for Tree Deletion Set and for Maximum Independent Set on $K_t$-free graphs. Back to the MMVC problem, given the (plausible) non-existence of subquadratic kernels for MMVC on general graphs, we provide subquadratic kernels on $H$-free graphs for several graphs $H$, such as the bull, the paw, or the complete graphs, by making use of the Erd\"os-Hajnal property. Finally, we prove that MMVC does not admit polynomial kernels parameterized by the size of a minimum vertex cover of the input graph, even on bipartite graphs, unless ${\sf NP} \subseteq {\sf coNP} / {\sf poly}$., Comment: 37 pages, 2 figures

The Grid Theorem of Robertson and Seymour [JCTB, 1986], is one of the most important tools in the field of structural graph theory, finding numerous applications in the design of algorithms for undirected graphs. An analogous version of the Grid Theorem in digraphs was conjectured by Johnson et al. [JCTB, 2001], and proved by Kawarabayashi and Kreutzer [STOC, 2015]. Namely, they showed that there is a function $f(k)$ such that every digraph of directed tree-width at least $f(k)$ contains a cylindrical grid of size $k$ as a butterfly minor and stated that their proof can be turned into an XP algorithm, with parameter $k$, that either constructs a decomposition of the appropriate width, or finds the claimed large cylindrical grid as a butterfly minor. In this paper, we adapt some of the steps of the proof of Kawarabayashi and Kreutzer to improve this XP algorithm into an FPT algorithm. Towards this, our main technical contributions are two FPT algorithms with parameter $k$. The first one either produces an arboreal decomposition of width $3k-2$ or finds a haven of order $k$ in a digraph $D$, improving on the original result for arboreal decompositions by Johnson et al. The second algorithm finds a well-linked set of order $k$ in a digraph $D$ of large directed tree-width. As tools to prove these results, we show how to solve a generalized version of the problem of finding balanced separators for a given set of vertices $T$ in FPT time with parameter $|T|$, a result that we consider to be of its own interest., Comment: 36 pages, 14 figures

A target set selection model is a graph $G$ with a threshold function $\tau:V\to \mathbb{N}$ upper-bounded by the vertex degree. For a given model, a set $S_0\subseteq V(G)$ is a target set if $V(G)$ can be partitioned into non-empty subsets $S_0,S_1,\dotsc,S_t$ such that, for $i \in \{1, \ldots, t\}$, $S_i$ contains exactly every vertex $v$ having at least $\tau(v)$ neighbors in $S_0\cup\dots\cup S_{i-1}$. We say that $t$ is the activation time $t_{\tau}(S_0)$ of the target set $S_0$. The problem of, given such a model, finding a target set of minimum size has been extensively studied in the literature. In this article, we investigate its variant, which we call TSS-time, in which the goal is to find a target set $S_0$ that maximizes $t_{\tau}(S_0)$. That is, given a graph $G$, a threshold function $\tau$ in $G$, and an integer $k$, the objective of the TSS-time problem is to decide whether $G$ contains a target set $S_0$ such that $t_{\tau}(S_0)\geq k$. Let $\tau^* = \max_{v \in V(G)} \tau(v)$. Our main result is the following dichotomy about the complexity of TSS-time when $G$ belongs to a minor-closed graph class ${\cal C}$: if ${\cal C}$ has bounded local treewidth, the problem is FPT parameterized by $k$ and $\tau^{\star}$; otherwise, it is NP-complete even for fixed $k=4$ and $\tau^{\star}=2$. We also prove that, with $\tau^*=2$, the problem is NP-hard in bipartite graphs for fixed $k=5$, and from previous results we observe that TSS-time is NP-hard in planar graphs and W[1]-hard parameterized by treewidth. Finally, we present a linear-time algorithm to find a target set $S_0$ in a given tree maximizing $t_{\tau}(S_0)$., Comment: 27 pages, 12 figures

Given a graph $G$ and a digraph $D$ whose vertices are the edges of $G$, we investigate the problem of finding a spanning tree of $G$ that satisfies the constraints imposed by $D$. The restrictions to add an edge in the tree depend on its neighborhood in $D$. Here, we generalize previously investigated problems by also considering as input functions $\ell$ and $u$ on $E(G)$ that give a lower and an upper bound, respectively, on the number of constraints that must be satisfied by each edge. The produced feasibility problem is denoted by \texttt{G-DCST}, while the optimization problem is denoted by \texttt{G-DCMST}. We show that \texttt{G-DCST} is NP-complete even under strong assumptions on the structures of $G$ and $D$, as well as on functions $\ell$ and $u$. On the positive side, we prove two polynomial results, one for \texttt{G-DCST} and another for \texttt{G-DCMST}, and also give a simple exponential-time algorithm along with a proof that it is asymptotically optimal under the \ETH. Finally, we prove that other previously studied constrained spanning tree (\textsc{CST}) problems can be modeled within our framework, namely, the \textsc{Conflict CST}, the \textsc{Forcing CS, the \textsc{At Least One/All Dependency CST}, the \textsc{Maximum Degree CST}, the \textsc{Minimum Degree CST}, and the \textsc{Fixed-Leaves Minimum Degree CST}., Comment: 28 pages, 6 figures

For a graph invariant $\pi$, the Contraction($\pi$) problem consists in, given a graph $G$ and two positive integers $k,d$, deciding whether one can contract at most $k$ edges of $G$ to obtain a graph in which $\pi$ has dropped by at least $d$. Galby et al. [ISAAC 2019, MFCS 2019] recently studied the case where $\pi$ is the size of a minimum dominating set. We focus on graph invariants defined as the minimum size of a vertex set that hits all the occurrences of graphs in a collection ${\cal H}$ according to a fixed containment relation. We prove co-NP-hardness results under some assumptions on the graphs in ${\cal H}$, which in particular imply that Contraction($\pi$) is co-NP-hard even for fixed $k=d=1$ when $\pi$ is the size of a minimum feedback vertex set or an odd cycle transversal. In sharp contrast, we show that when $\pi$ is the size of a minimum vertex cover, the problem is in XP parameterized by $d$., Comment: 19 pages, 2 figures

We study the kernelization complexity of structural parameterizations of the Vertex Cover problem. Here, the goal is to find a polynomial-time preprocessing algorithm that can reduce any instance $(G,k)$ of the Vertex Cover problem to an equivalent one, whose size is polynomial in the size of a pre-determined complexity parameter of $G$. A long line of previous research deals with parameterizations based on the number of vertex deletions needed to reduce $G$ to a member of a simple graph class $\mathcal{F}$, such as forests, graphs of bounded tree-depth, and graphs of maximum degree two. We set out to find the most general graph classes $\mathcal{F}$ for which Vertex Cover parameterized by the vertex-deletion distance of the input graph to $\mathcal{F}$, admits a polynomial kernelization. We give a complete characterization of the minor-closed graph families $\mathcal{F}$ for which such a kernelization exists. We introduce a new graph parameter called bridge-depth, and prove that a polynomial kernelization exists if and only if $\mathcal{F}$ has bounded bridge-depth. The proof is based on an interesting connection between bridge-depth and the size of minimal blocking sets in graphs, which are vertex sets whose removal decreases the independence number., Comment: Author-accepted version of SIDMA publication

Let ${\cal G}$ be a minor-closed graph class. We say that a graph $G$ is a $k$-apex of ${\cal G}$ if $G$ contains a set $S$ of at most $k$ vertices such that $G\setminus S$ belongs to ${\cal G}$. We denote by ${\cal A}_k ({\cal G})$ the set of all graphs that are $k$-apices of ${\cal G}.$ In the first paper of this series we obtained upper bounds on the size of the graphs in the minor-obstruction set of ${\cal A}_k ({\cal G})$, i.e., the minor-minimal set of graphs not belonging to ${\cal A}_k ({\cal G}).$ In this article we provide an algorithm that, given a graph $G$ on $n$ vertices, runs in $2^{{\sf poly}(k)}\cdot n^3$-time and either returns a set $S$ certifying that $G \in {\cal A}_k ({\cal G})$, or reports that $G \notin {\cal A}_k ({\cal G})$. Here ${\sf poly}$ is a polynomial function whose degree depends on the maximum size of a minor-obstruction of ${\cal G}.$ In the special case where ${\cal G}$ excludes some apex graph as a minor, we give an alternative algorithm running in $2^{{\sf poly}(k)}\cdot n^2$-time., Comment: 37 pages, 3 figures

We investigate a number of coloring problems restricted to bipartite graphs with bounded diameter. First, we investigate the $k$-List Coloring, List $k$-Coloring, and $k$-Precoloring Extension problems on bipartite graphs with diameter at most $d$, proving NP-completeness in most cases, and leaving open only the List $3$-Coloring and $3$-Precoloring Extension problems when $d=3$. Some of these results are obtained through a proof that the Surjective $C_6$-Homomorphism problem is NP-complete on bipartite graphs with diameter at most four. Although the latter result has been already proved [Vikas, 2017], we present ours as an alternative simpler one. As a byproduct, we also get that $3$-Biclique Partition is NP-complete. An attempt to prove this result was presented in [Fleischner, Mujuni, Paulusma, and Szeider, 2009], but there was a flaw in their proof, which we identify and discuss here. Finally, we prove that the $3$-Fall Coloring problem is NP-complete on bipartite graphs with diameter at most four, and prove that NP-completeness for diameter three would also imply NP-completeness of $3$-Precoloring Extension on diameter three, thus closing the previously mentioned open cases. This would also answer a question posed in [Kratochv\'il, Tuza, and Voigt, 2002]., Comment: 21 pages, 9 figures

For a fixed graph $H$, the $H$-IS-Deletion problem asks, given a graph $G$, for the minimum size of a set $S \subseteq V(G)$ such that $G\setminus S$ does not contain $H$ as an induced subgraph. Motivated by previous work about hitting (topological) minors and subgraphs on bounded treewidth graphs, we are interested in determining, for a fixed graph $H$, the smallest function $f_H(t)$ such that $H$-IS-Deletion can be solved in time $f_H(t) \cdot n^{O(1)}$ assuming the Exponential Time Hypothesis (ETH), where $t$ and $n$ denote the treewidth and the number of vertices of the input graph, respectively. We show that $f_H(t) = 2^{O(t^{h-2})}$ for every graph $H$ on $h \geq 3$ vertices, and that $f_H(t) = 2^{O(t)}$ if $H$ is a clique or an independent set. We present a number of lower bounds by generalizing a reduction of Cygan et al. [MFCS 2014] for the subgraph version. In particular, we show that when $H$ deviates slightly from a clique, the function $f_H(t)$ suffers a sharp jump: if $H$ is obtained from a clique of size $h$ by removing one edge, then $f_H(t) = 2^{\Theta(t^{h-2})}$. We also show that $f_H(t) = 2^{\Omega(t^{h})}$ when $H=K_{h,h}$, and this reduction answers an open question of Mi. Pilipczuk [MFCS 2011] about the function $f_{C_4}(t)$ for the subgraph version. Motivated by Cygan et al. [MFCS 2014], we also consider the colorful variant of the problem, where each vertex of $G$ is colored with some color from $V(H)$ and we require to hit only induced copies of $H$ with matching colors. In this case, we determine, under the ETH, the function $f_H(t)$ for every connected graph $H$ on $h$ vertices: if $h\leq 2$ the problem can be solved in polynomial time; if $h\geq 3$, $f_H(t) = 2^{\Theta(t)}$ if $H$ is a clique, and $f_H(t) = 2^{\Theta(t^{h-2})}$ otherwise., Comment: 26 pages, 3 figures

We study the complexity of the problems of finding, given a graph $G$, a largest induced subgraph of $G$ with all degrees odd (called an odd subgraph), and the smallest number of odd subgraphs that partition $V(G)$. We call these parameters ${\sf mos}(G)$ and $\chi_{{\sf odd}}(G)$, respectively. We prove that deciding whether $\chi_{{\sf odd}}(G) \leq q$ is polynomial-time solvable if $q \leq 2$, and NP-complete otherwise. We provide algorithms in time $2^{O({\sf rw})} \cdot n^{O(1)}$ and $2^{O(q \cdot {\sf rw})} \cdot n^{O(1)}$ to compute ${\sf mos}(G)$ and to decide whether $\chi_{{\sf odd}}(G) \leq q$ on $n$-vertex graphs of rank-width at most ${\sf rw}$, respectively, and we prove that the dependency on rank-width is asymptotically optimal under the ETH. Finally, we give some tight bounds for these parameters on restricted graph classes or in relation to other parameters., Comment: 24 pages, 8 figures

In the Directed Disjoint Paths problem, we are given a digraph $D$ and a set of requests $\{(s_1, t_1), \ldots, (s_k, t_k)\}$, and the task is to find a collection of pairwise vertex-disjoint paths $\{P_1, \ldots, P_k\}$ such that each $P_i$ is a path from $s_i$ to $t_i$ in $D$. This problem is NP-complete for fixed $k=2$ and W[1]-hard with parameter $k$ in DAGs. A few positive results are known under restrictions on the input digraph, such as being planar or having bounded directed tree-width, or under relaxations of the problem, such as allowing for vertex congestion. Positive results are scarce, however, for general digraphs. In this article we propose a novel global congestion metric for the problem: we only require the paths to be "disjoint enough", in the sense that they must behave properly not in the whole graph, but in an unspecified part of size prescribed by a parameter. Namely, in the Disjoint Enough Directed Paths problem, given an $n$-vertex digraph $D$, a set of $k$ requests, and non-negative integers $d$ and $s$, the task is to find a collection of paths connecting the requests such that at least $d$ vertices of $D$ occur in at most $s$ paths of the collection. We study the parameterized complexity of this problem for a number of choices of the parameter, including the directed tree-width of $D$. Among other results, we show that the problem is W[1]-hard in DAGs with parameter $d$ and, on the positive side, we give an algorithm in time $\mathcal{O}(n^{d+2} \cdot k^{d\cdot s})$ and a kernel of size $d \cdot 2^{k-s}\cdot \binom{k}{s} + 2k$ in general digraphs. This latter result has consequences for the Steiner Network problem: we show that it is FPT parameterized by the number $k$ of terminals and $p$, where $p = n - q$ and $q$ is the size of the solution., Comment: 25 pages, 9 figures

For a fixed finite collection of graphs ${\cal F}$, the ${\cal F}$-M-DELETION problem asks, given an $n$-vertex input graph $G,$ for the minimum number of vertices that intersect all minor models in $G$ of the graphs in ${\cal F}$. by Courcelle Theorem, this problem can be solved in time $f_{{\cal F}}(tw)\cdot n^{O(1)},$ where $tw$ is the treewidth of $G$, for some function $f_{{\cal F}}$ depending on ${\cal F}$ In a recent series of articles, we have initiated the programme of optimizing asymptotically the function $f_{{\cal F}}$. Here we provide an algorithm showing that $f_{{\cal F}}(tw) = 2^{O(tw\cdot \log tw)}$ for every collection ${\cal F}$. Prior to this work, the best known function $f_{{\cal F}}$ was double-exponential in $tw$. In particular, our algorithm vastly extends the results of Jansen et al. [SODA 2014] for the particular case ${\cal F}=\{K_5,K_{3,3}\}$ and of Kociumaka and Pilipczuk [Algorithmica 2019] for graphs of bounded genus, and answers an open problem posed by Cygan et al. [Inf Comput 2017]. We combine several ingredients such as the machinery of boundaried graphs in dynamic programming via representatives, the Flat Wall Theorem, Bidimensionality, the irrelevant vertex technique, treewidth modulators, and protrusion replacement. Together with our previous results providing single-exponential algorithms for particular collections ${\cal F}$ [Theor Comput Sci 2020] and general lower bounds [J Comput Syst Sci 2020], our algorithm yields the following complexity dichotomy when ${\cal F} = \{H\}$ contains a single connected graph $H,$ assuming the Exponential Time Hypothesis: $f_H(tw)=2^{\Theta(tw)}$ if $H$ is a contraction of the chair or the banner, and $f_H(tw)=2^{\Theta(tw\cdot \log tw)}$ otherwise., Comment: 51 pages, 17 figures

A matching cut is a partition of the vertex set of a graph into two sets $A$ and $B$ such that each vertex has at most one neighbor in the other side of the cut. The MATCHING CUT problem asks whether a graph has a matching cut, and has been intensively studied in the literature. Motivated by a question posed by Komusiewicz et al. [IPEC 2018], we introduce a natural generalization of this problem, which we call $d$-CUT: for a positive integer $d$, a $d$-cut is a bipartition of the vertex set of a graph into two sets $A$ and $B$ such that each vertex has at most $d$ neighbors across the cut. We generalize (and in some cases, improve) a number of results for the MATCHING CUT problem. Namely, we begin with an NP-hardness reduction for $d$-CUT on $(2d+2)$-regular graphs and a polynomial algorithm for graphs of maximum degree at most $d+2$. The degree bound in the hardness result is unlikely to be improved, as it would disprove a long-standing conjecture in the context of internal partitions. We then give FPT algorithms for several parameters: the maximum number of edges crossing the cut, treewidth, distance to cluster, and distance to co-cluster. In particular, the treewidth algorithm improves upon the running time of the best known algorithm for MATCHING CUT. Our main technical contribution, building on the techniques of Komusiewicz et al. [IPEC 2018], is a polynomial kernel for $d$-CUT for every positive integer $d$, parameterized by the distance to a cluster graph. We also rule out the existence of polynomial kernels when parameterizing simultaneously by the number of edges crossing the cut, the treewidth, and the maximum degree. Finally, we provide an exact exponential algorithm slightly faster than the naive brute force approach running in time $O^*(2^n)$., Comment: 24 pages, 8 figures

An edge coloring of the n-vertex complete graph K_n is a Gallai coloring if it does not contain any rainbow triangle, that is, a triangle whose edges are colored with three distinct colors. We prove that the number of Gallai colorings of K_n with at most three colors is at most 7(n+1)*2^{n choose 2}, which improves the best known upper bound of \frac{3}{2} * (n-1)! * 2^{(n-1) choose 2} in [Discrete Mathematics, 2017]., Comment: 17 pages, 9 pages of appendix, 7 figures

Given a graph $G$, a proper $k$-coloring of $G$ is a partition $c = (S_i)_{i\in [1,k]}$ of $V(G)$ into $k$ stable sets $S_1,\ldots, S_{k}$. Given a weight function $w: V(G) \to \mathbb{R}^+$, the weight of a color $S_i$ is defined as $w(i) = \max_{v \in S_i} w(v)$ and the weight of a coloring $c$ as $w(c) = \sum_{i=1}^{k}w(i)$. Guan and Zhu [Inf. Process. Lett., 1997] defined the weighted chromatic number of a pair $(G,w)$, denoted by $\sigma(G,w)$, as the minimum weight of a proper coloring of $G$. The problem of determining $\sigma(G,w)$ has received considerable attention during the last years, and has been proved to be notoriously hard: for instance, it is NP-hard on split graphs, unsolvable on $n$-vertex trees in time $n^{o(\log n)}$ unless the ETH fails, and W[1]-hard on forests parameterized by the size of a largest tree. In this article we provide some positive results for the problem, by considering its so-called dual parameterization: given a vertex-weighted graph $(G,w)$ and an integer $k$, the question is whether $\sigma(G,w) \leq \sum_{v \in V(G)} w(v) - k$. We prove that this problem is FPT by providing an algorithm running in time $9^k \cdot n^{O(1)}$, and it is easy to see that no algorithm in time $2^{o(k)} \cdot n^{O(1)}$ exists under the ETH. On the other hand, we present a kernel with at most $(2^{k-1}+1) (k-1)$ vertices, and we rule out the existence of polynomial kernels unless ${\sf NP} \subseteq {\sf coNP} / {\sf poly}$, even on split graphs with only two different weights. Finally, we identify some classes of graphs on which the problem admits a polynomial kernel, in particular interval graphs and subclasses of split graphs, and in the latter case we present lower bounds on the degrees of the polynomials., Comment: 13 pages

The input of the Maximum Colored Cut problem consists of a graph $G=(V,E)$ with an edge-coloring $c:E\to \{1,2,3,\ldots , p\}$ and a positive integer $k$, and the question is whether $G$ has a nontrivial edge cut using at least $k$ colors. The Colorful Cut problem has the same input but asks for a nontrivial edge cut using all $p$ colors. Unlike what happens for the classical Maximum Cut problem, we prove that both problems are NP-complete even on complete, planar, or bounded treewidth graphs. Furthermore, we prove that Colorful Cut is NP-complete even when each color class induces a clique of size at most 3, but is trivially solvable when each color induces a $K_2$. On the positive side, we prove that Maximum Colored Cut is fixed-parameter tractable when parameterized by either $k$ or $p$, by constructing a cubic kernel in both cases., Comment: 15 pages, 6 figures

Given a simple graph $G$, a weight function $w:E(G)\rightarrow \mathbb{N} \setminus \{0\}$, and an orientation $D$ of $G$, we define $\mu^-(D) = \max_{v \in V(G)} w_D^-(v)$, where $w^-_D(v) = \sum_{u\in N_D^{-}(v)}w(uv)$. We say that $D$ is a weighted proper orientation of $G$ if $w^-_D(u) \neq w^-_D(v)$ whenever $u$ and $v$ are adjacent. We introduce the parameter weighted proper orientation number of $G$, denoted by $\overrightarrow{\chi}(G,w)$, which is the minimum, over all weighted proper orientations $D$ of $G$, of $\mu^-(D)$. When all the weights are equal to 1, this parameter is equal to the proper orientation number of $G$, which has been object of recent studies and whose determination is NP-hard in general, but polynomial-time solvable on trees. Here, we prove that the equivalent decision problem of the weighted proper orientation number (i.e., $\overrightarrow{\chi}(G,w) \leq k$?) is (weakly) NP-complete on trees but can be solved by a pseudo-polynomial time algorithm whose running time depends on $k$. Furthermore, we present a dynamic programming algorithm to determine whether a general graph $G$ on $n$ vertices and treewidth at most ${\sf tw}$ satisfies $\overrightarrow{\chi}(G,w) \leq k$, running in time $O(2^{{\sf tw}^2}\cdot k^{3{\sf tw}}\cdot {\sf tw} \cdot n)$, and we complement this result by showing that the problem is W[1]-hard on general graphs parameterized by the treewidth of $G$, even if the weights are polynomial in $n$., Comment: 14 pages, 3 figures

Let $W_t$ denote the wheel on $t+1$ vertices. We prove that for every integer $t \geq 3$ there is a constant $c=c(t)$ such that for every integer $k\geq 1$ and every graph $G$, either $G$ has $k$ vertex-disjoint subgraphs each containing $W_t$ as minor, or there is a subset $X$ of at most $c k \log k$ vertices such that $G-X$ has no $W_t$ minor. This is best possible, up to the value of $c$. We conjecture that the result remains true more generally if we replace $W_t$ with any fixed planar graph $H$., Comment: 15 pages, 1 figure

For two positive integers $k$ and $\ell$, a $(k \times \ell)$-spindle is the union of $k$ pairwise internally vertex-disjoint directed paths with $\ell$ arcs between two vertices $u$ and $v$. We are interested in the (parameterized) complexity of several problems consisting in deciding whether a given digraph contains a subdivision of a spindle, which generalize both the Maximum Flow and Longest Path problems. We obtain the following complexity dichotomy: for a fixed $\ell \geq 1$, finding the largest $k$ such that an input digraph $G$ contains a subdivision of a $(k \times \ell)$-spindle is polynomial-time solvable if $\ell \leq 3$, and NP-hard otherwise. We place special emphasis on finding spindles with exactly two paths and present FPT algorithms that are asymptotically optimal under the ETH. These algorithms are based on the technique of representative families in matroids, and use also color-coding as a subroutine. Finally, we study the case where the input graph is acyclic, and present several algorithmic and hardness results., Comment: 20 pages, 7 figures

An $(r, \ell)$-partition of a graph $G$ is a partition of its vertex set into $r$ independent sets and $\ell$ cliques. A graph is $(r, \ell)$ if it admits an $(r, \ell)$-partition. A graph is well-covered if every maximal independent set is also maximum. A graph is $(r,\ell)$-well-covered if it is both $(r,\ell)$ and well-covered. In this paper we consider two different decision problems. In the $(r,\ell)$-Well-Covered Graph problem ($(r,\ell)$WCG for short), we are given a graph $G$, and the question is whether $G$ is an $(r,\ell)$-well-covered graph. In the Well-Covered $(r,\ell)$-Graph problem (WC$(r,\ell)$G for short), we are given an $(r,\ell)$-graph $G$ together with an $(r,\ell)$-partition of $V(G)$ into $r$ independent sets and $\ell$ cliques, and the question is whether $G$ is well-covered. We classify most of these problems into P, coNP-complete, NP-complete, NP-hard, or coNP-hard. Only the cases WC$(r,0)$G for $r\geq 3$ remain open. In addition, we consider the parameterized complexity of these problems for several choices of parameters, such as the size $\alpha$ of a maximum independent set of the input graph, its neighborhood diversity, its clique-width, or the number $\ell$ of cliques in an $(r, \ell)$-partition. In particular, we show that the parameterized problem of deciding whether a general graph is well-covered parameterized by $\alpha$ can be reduced to the WC$(0,\ell)$G problem parameterized by $\ell$. In addition, we prove that both problems are coW[2]-hard but can be solved in XP-time., Comment: 24 pages, 2 figures

For a finite collection of graphs ${\cal F}$, the ${\cal F}$-M-DELETION problem consists in, given a graph $G$ and an integer $k$, deciding whether there exists $S \subseteq V(G)$ with $|S| \leq k$ such that $G \setminus S$ does not contain any of the graphs in ${\cal F}$ as a minor. We are interested in the parameterized complexity of ${\cal F}$-M-DELETION when the parameter is the treewidth of $G$, denoted by $tw$. Our objective is to determine, for a fixed ${\cal F}$, the smallest function $f_{{\cal F}}$ such that {${\cal F}$-M-DELETION can be solved in time $f_{{\cal F}}(tw) \cdot n^{O(1)}$ on $n$-vertex graphs. We prove that $f_{{\cal F}}(tw) = 2^{2^{O(tw \cdot\log tw)}}$ for every collection ${\cal F}$, that $f_{{\cal F}}(tw) = 2^{O(tw \cdot\log tw)}$ if ${\cal F}$ contains a planar graph, and that $f_{{\cal F}}(tw) = 2^{O(tw)}$ if in addition the input graph $G$ is planar or embedded in a surface. We also consider the version of the problem where the graphs in ${\cal F}$ are forbidden as topological minors, called ${\cal F}$-TM-DELETION. We prove similar results for this problem, except that in the last two algorithms, instead of requiring ${\cal F}$ to contain a planar graph, we need it to contain a subcubic planar graph. This is the first of a series of articles on this topic., Comment: 36 pages

Given a graph $G$, a proper $k$-coloring of $G$ is a partition $c = (S_i)_{i\in [1,k]}$ of $V(G)$ into $k$ stable sets $S_1,\ldots, S_{k}$. Given a weight function $w: V(G) \to \mathbb{R}^+$, the weight of a color $S_i$ is defined as $w(i) = \max_{v \in S_i} w(v)$ and the weight of a coloring $c$ as $w(c) = \sum_{i=1}^{k}w(i)$. Guan and Zhu [Inf. Process. Lett., 1997] defined the weighted chromatic number of a pair $(G,w)$, denoted by $\sigma(G,w)$, as the minimum weight of a proper coloring of $G$. For a positive integer $r$, they also defined $\sigma(G,w;r)$ as the minimum of $w(c)$ among all proper $r$-colorings $c$ of $G$. The complexity of determining $\sigma(G,w)$ when $G$ is a tree was open for almost 20 years, until Ara\'ujo et al. [SIAM J. Discrete Math., 2014] recently proved that the problem cannot be solved in time $n^{o(\log n)}$ on $n$-vertex trees unless the Exponential Time Hypothesis (ETH) fails. The objective of this article is to provide hardness results for computing $\sigma(G,w)$ and $\sigma(G,w;r)$ when $G$ is a tree or a forest, relying on complexity assumptions weaker than the ETH. Namely, we study the problem from the viewpoint of parameterized complexity, and we assume the weaker hypothesis $FPT \neq W[1]$. Building on the techniques of Ara\'ujo et al., we prove that when $G$ is a forest, computing $\sigma(G,w)$ is $W[1]$-hard parameterized by the size of a largest connected component of $G$, and that computing $\sigma(G,w;r)$ is $W[2]$-hard parameterized by $r$. Our results rule out the existence of $FPT$ algorithms for computing these invariants on trees or forests for many natural choices of the parameter., Comment: 14 pages, 4 figures

For a (possibly infinite) fixed family of graphs F, we say that a graph G overlays F on a hypergraph H if V(H) is equal to V(G) and the subgraph of G induced by every hyperedge of H contains some member of F as a spanning subgraph.While it is easy to see that the complete graph on |V(H)| overlays F on a hypergraph H whenever the problem admits a solution, the Minimum F-Overlay problem asks for such a graph with the minimum number of edges.This problem allows to generalize some natural problems which may arise in practice. For instance, if the family F contains all connected graphs, then Minimum F-Overlay corresponds to the Minimum Connectivity Inference problem (also known as Subset Interconnection Design problem) introduced for the low-resolution reconstruction of macro-molecular assembly in structural biology, or for the design of networks.Our main contribution is a strong dichotomy result regarding the polynomial vs. NP-hard status with respect to the considered family F. Roughly speaking, we show that the easy cases one can think of (e.g. when edgeless graphs of the right sizes are in F, or if F contains only cliques) are the only families giving rise to a polynomial problem: all others are NP-complete.We then investigate the parameterized complexity of the problem and give similar sufficient conditions on F that give rise to W[1]-hard, W[2]-hard or FPT problems when the parameter is the size of the solution.This yields an FPT/W[1]-hard dichotomy for a relaxed problem, where every hyperedge of H must contain some member of F as a (non necessarily spanning) subgraph.

We study the minimum diameter spanning tree problem under the reload cost model (DIAMETER-TREE for short) introduced by Wirth and Steffan (2001). In this problem, given an undirected edge-colored graph $G$, reload costs on a path arise at a node where the path uses consecutive edges of different colors. The objective is to find a spanning tree of $G$ of minimum diameter with respect to the reload costs. We initiate a systematic study of the parameterized complexity of the DIAMETER-TREE problem by considering the following parameters: the cost of a solution, and the treewidth and the maximum degree $\Delta$ of the input graph. We prove that DIAMETER-TREE is para-NP-hard for any combination of two of these three parameters, and that it is FPT parameterized by the three of them. We also prove that the problem can be solved in polynomial time on cactus graphs. This result is somehow surprising since we prove DIAMETER-TREE to be NP-hard on graphs of treewidth two, which is best possible as the problem can be trivially solved on forests. When the reload costs satisfy the triangle inequality, Wirth and Steffan (2001) proved that the problem can be solved in polynomial time on graphs with $\Delta = 3$, and Galbiati (2008) proved that it is NP-hard if $\Delta = 4$. Our results show, in particular, that without the requirement of the triangle inequality, the problem is NP-hard if $\Delta = 3$, which is also best possible. Finally, in the case where the reload costs are polynomially bounded by the size of the input graph, we prove that DIAMETER-TREE is in XP and W[1]-hard parameterized by the treewidth plus $\Delta$., Comment: 29 pages, 6 figures

A matching in a graph is uniquely restricted if no other matching covers exactly the same set of vertices. This notion was defined by Golumbic, Hirst, and Lewenstein and studied in a number of articles. Our contribution is twofold. We provide approximation algorithms for computing a uniquely restricted matching of maximum size in some bipartite graphs. In particular, we achieve a ratio of $9/5$ for subcubic bipartite graphs, improving over a $2$-approximation algorithm proposed by Mishra. Furthermore, we study the uniquely restricted chromatic index of a graph, defined as the minimum number of uniquely restricted matchings into which its edge set can be partitioned. We provide tight upper bounds in terms of the maximum degree and characterize all extremal graphs. Our constructive proofs yield efficient algorithms to determine the corresponding edge colorings., Comment: 23 pages, 11 figures

During the last years, several algorithmic meta-theorems have appeared (Bodlaender et al. [FOCS 2009], Fomin et al. [SODA 2010], Kim et al. [ICALP 2013]) guaranteeing the existence of linear kernels on sparse graphs for problems satisfying some generic conditions. The drawback of such general results is that it is usually not clear how to derive from them constructive kernels with reasonably low explicit constants. To fill this gap, we recently presented [STACS 2014] a framework to obtain explicit linear kernels for some families of problems whose solutions can be certified by a subset of vertices. In this article we enhance our framework to deal with packing problems, that is, problems whose solutions can be certified by collections of subgraphs of the input graph satisfying certain properties. ${\mathcal F}$-Packing is a typical example: for a family ${\mathcal F}$ of connected graphs that we assume to contain at least one planar graph, the task is to decide whether a graph $G$ contains $k$ vertex-disjoint subgraphs such that each of them contains a graph in ${\mathcal F}$ as a minor. We provide explicit linear kernels on sparse graphs for the following two orthogonal generalizations of ${\mathcal F}$-Packing: for an integer $\ell \geq 1$, one aims at finding either minor-models that are pairwise at distance at least $\ell$ in $G$ ($\ell$-${\mathcal F}$-Packing), or such that each vertex in $G$ belongs to at most $\ell$ minors-models (${\mathcal F}$-Packing with $\ell$-Membership). Finally, we also provide linear kernels for the versions of these problems where one wants to pack subgraphs instead of minors., Comment: 43 pages, 4 figures

In the last years, kernelization with structural parameters has been an active area of research within the field of parameterized complexity. As a relevant example, Gajarsk{\`y} et al. [ESA 2013] proved that every graph problem satisfying a property called finite integer index admits a linear kernel on graphs of bounded expansion and an almost linear kernel on nowhere dense graphs, parameterized by the size of a $c$-treedepth modulator, which is a vertex set whose removal results in a graph of treedepth at most $c$, where $c \geq 1$ is a fixed integer. The authors left as further research to investigate this parameter on general graphs, and in particular to find problems that, while admitting polynomial kernels on sparse graphs, behave differently on general graphs. In this article we answer this question by finding two very natural such problems: we prove that Vertex Cover admits a polynomial kernel on general graphs for any integer $c \geq 1$, and that Dominating Set does not for any integer $c \geq 2$ even on degenerate graphs, unless $\text{NP} \subseteq \text{coNP}/\text{poly}$. For the positive result, we build on the techniques of Jansen and Bodlaender [STACS 2011], and for the negative result we use a polynomial parameter transformation for $c\geq 3$ and an OR-cross-composition for $c = 2$. As existing results imply that Dominating Set admits a polynomial kernel on degenerate graphs for $c = 1$, our result provides a dichotomy about the existence of polynomial kernels for Dominating Set on degenerate graphs with this parameter., Comment: 23 pages, 3 figures

In an edge-colored graph, the cost incurred at a vertex on a path when two incident edges with different colors are traversed is called reload or changeover cost. The "Minimum Changeover Cost Arborescence" (MINCCA) problem consists in finding an arborescence with a given root vertex such that the total changeover cost of the internal vertices is minimized. It has been recently proved by G\"oz\"upek et al. [TCS 2016] that the problem is FPT when parameterized by the treewidth and the maximum degree of the input graph. In this article we present the following results for the MINCCA problem: - the problem is W[1]-hard parameterized by the treedepth of the input graph, even on graphs of average degree at most 8. In particular, it is W[1]-hard parameterized by the treewidth of the input graph, which answers the main open problem of G\"oz\"upek et al. [TCS 2016]; - it is W[1]-hard on multigraphs parameterized by the tree-cutwidth of the input multigraph; - it is FPT parameterized by the star tree-cutwidth of the input graph, which is a slightly restricted version of tree-cutwidth. This result strictly generalizes the FPT result given in G\"oz\"upek et al. [TCS 2016]; - it remains NP-hard on planar graphs even when restricted to instances with at most 6 colors and 0/1 symmetric costs, or when restricted to instances with at most 8 colors, maximum degree bounded by 4, and 0/1 symmetric costs., Comment: 25 pages, 11 figures

We focus on counting the number of labeled graphs on $n$ vertices and treewidth at most $k$ (or equivalently, the number of labeled partial $k$-trees), which we denote by $T_{n,k}$. So far, only the particular cases $T_{n,1}$ and $T_{n,2}$ had been studied. We show that $$ \left(c \cdot \frac{k\cdot 2^k \cdot n}{\log k} \right)^n \cdot 2^{-\frac{k(k+3)}{2}} \cdot k^{-2k-2}\ \leq\ T_{n,k}\ \leq\ \left(k \cdot 2^k \cdot n\right)^n \cdot 2^{-\frac{k(k+1)}{2}} \cdot k^{-k}, $$ for $k > 1$ and some explicit absolute constant $c > 0$. The upper bound is an immediate consequence of the well-known number of labeled $k$-trees, while the lower bound is obtained from an explicit algorithmic construction. It follows from this construction that both bounds also apply to graphs of pathwidth and proper-pathwidth at most $k$., Comment: 12 pages, 3 figures

In phylogenetics, a central problem is to infer the evolutionary relationships between a set of species $X$; these relationships are often depicted via a phylogenetic tree -- a tree having its leaves univocally labeled by elements of $X$ and without degree-2 nodes -- called the "species tree". One common approach for reconstructing a species tree consists in first constructing several phylogenetic trees from primary data (e.g. DNA sequences originating from some species in $X$), and then constructing a single phylogenetic tree maximizing the "concordance" with the input trees. The so-obtained tree is our estimation of the species tree and, when the input trees are defined on overlapping -- but not identical -- sets of labels, is called "supertree". In this paper, we focus on two problems that are central when combining phylogenetic trees into a supertree: the compatibility and the strict compatibility problems for unrooted phylogenetic trees. These problems are strongly related, respectively, to the notions of "containing as a minor" and "containing as a topological minor" in the graph community. Both problems are known to be fixed-parameter tractable in the number of input trees $k$, by using their expressibility in Monadic Second Order Logic and a reduction to graphs of bounded treewidth. Motivated by the fact that the dependency on $k$ of these algorithms is prohibitively large, we give the first explicit dynamic programming algorithms for solving these problems, both running in time $2^{O(k^2)} \cdot n$, where $n$ is the total size of the input., Comment: 18 pages, 1 figure