1,142 results on '"Salgia, Ravi"'
Search Results
2. Comprehensive investigation of long non-coding RNA HOTAIR polymorphisms and cancer risk: a current meta-analysis encompassing 96,458 participants
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Krishna, B. Madhu, Garg, Pankaj, Ramisetty, Sravani, Subbalakshmi, Ayalur Raghu, Kulkarni, Prakash, Salgia, Ravi, and Singhal, Sharad S.
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- 2024
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3. Spatial iTME analysis of KRAS mutant NSCLC and immunotherapy outcome
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Zhao, Dan, Li, Haiqing, Mambetsariev, Isa, Mirzapoiazova, Tamara, Chen, Chen, Fricke, Jeremy, Wheeler, Deric, Arvanitis, Leonidas, Pillai, Raju, Afkhami, Michelle, Chen, Bihong T., Sattler, Martin, Erhunmwunsee, Loretta, Massarelli, Erminia, Kulkarni, Prakash, Amini, Arya, Armstrong, Brian, and Salgia, Ravi
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- 2024
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4. Differential Distribution of Brain Metastases from Non-Small Cell Lung Cancer Based on Mutation Status
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Chen, Bihong T, Jin, Taihao, Ye, Ningrong, Chen, Sean W, Rockne, Russell C, Yoon, Stephanie, Mambetsariev, Isa, Daniel, Ebenezer, and Salgia, Ravi
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Biomedical and Clinical Sciences ,Clinical Sciences ,Oncology and Carcinogenesis ,Lung Cancer ,Clinical Research ,Lung ,Brain Disorders ,Brain Cancer ,Neurosciences ,Rare Diseases ,Cancer ,brain metastases ,lung cancer ,mutation status ,spatial distribution ,Psychology ,Cognitive Sciences ,Applied and developmental psychology ,Biological psychology - Abstract
Non-small cell lung cancer (NSCLC) has a high rate of brain metastasis. The purpose of this study was to assess the differential distribution of brain metastases from primary NSCLC based on mutation status. Brain MRI scans of patients with brain metastases from primary NSCLC were retrospectively analyzed. Brain metastatic tumors were grouped according to mutation status of their primary NSCLC and the neuroimaging features of these brain metastases were analyzed. A total of 110 patients with 1386 brain metastases from primary NSCLC were included in this study. Gray matter density at the tumor center peaked at ~0.6 for all mutations. The median depths of tumors were 7.9 mm, 8.7 mm and 9.1 mm for EGFR, ALK and KRAS mutation groups, respectively (p = 0.044). Brain metastases for the EGFR mutation-positive group were more frequently located in the left cerebellum, left cuneus, left precuneus and right precentral gyrus. In the ALK mutation-positive group, brain metastases were more frequently located in the right middle occipital gyrus, right posterior cingulate, right precuneus, right precentral gyrus and right parietal lobe. In the KRAS mutation-positive patient group, brain metastases were more frequently located in the posterior left cerebellum. Our study showed differential spatial distribution of brain metastases in patients with NSCLC according to their mutation status. Information regarding distribution of brain metastases is clinically relevant as it could be helpful to guide treatment planning for targeted therapy, and for predicting prognosis.
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- 2023
5. Teriflunomide/leflunomide synergize with chemotherapeutics by decreasing mitochondrial fragmentation via DRP1 in SCLC
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Mirzapoiazova, Tamara, Tseng, Liz, Mambetsariev, Bolot, Li, Haiqing, Lou, Chih-Hong, Pozhitkov, Alex, Ramisetty, Sravani Keerthi, Nam, Sangkil, Mambetsariev, Isa, Armstrong, Brian, Malhotra, Jyoti, Arvanitis, Leonidas, Nasser, Mohd Wasim, Batra, Surinder K., Rosen, Steven T., Wheeler, Deric L., Singhal, Sharad S., Kulkarni, Prakash, and Salgia, Ravi
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- 2024
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6. Chimeric antibody targeting unique epitope on onco-mucin16 reduces tumor burden in pancreatic and lung malignancies
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Shah, Ashu, Chaudhary, Sanjib, Lakshmanan, Imayavaramban, Aithal, Abhijit, Kisling, Sophia G., Sorrell, Claire, Marimuthu, Saravanakumar, Gautam, Shailendra K., Rauth, Sanchita, Kshirsagar, Prakash, Cox, Jesse L., Natarajan, Gopalakrishnan, Bhatia, Rakesh, Mallya, Kavita, Rachagani, Satyanarayana, Nasser, Mohd Wasim, Ganti, Apar Kishor, Salgia, Ravi, Kumar, Sushil, Jain, Maneesh, Ponnusamy, Moorthy P., and Batra, Surinder K.
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- 2023
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7. MicroRNA-1 attenuates the growth and metastasis of small cell lung cancer through CXCR4/FOXM1/RRM2 axis
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Khan, Parvez, Siddiqui, Jawed Akhtar, Kshirsagar, Prakash G., Venkata, Ramakanth Chirravuri, Maurya, Shailendra Kumar, Mirzapoiazova, Tamara, Perumal, Naveenkumar, Chaudhary, Sanjib, Kanchan, Ranjana Kumari, Fatima, Mahek, Khan, Md Arafat, Rehman, Asad Ur, Lakshmanan, Imayavaramban, Mahapatra, Sidharth, Talmon, Geoffrey A., Kulkarni, Prakash, Ganti, Apar K., Jain, Maneesh, Salgia, Ravi, Batra, Surinder Kumar, and Nasser, Mohd Wasim
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- 2023
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8. Predicting Survival Duration With MRI Radiomics of Brain Metastases From Non-small Cell Lung Cancer
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Chen, Bihong T, Jin, Taihao, Ye, Ningrong, Mambetsariev, Isa, Wang, Tao, Wong, Chi Wah, Chen, Zikuan, Rockne, Russell C, Colen, Rivka R, Holodny, Andrei I, Sampath, Sagus, and Salgia, Ravi
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Biomedical and Clinical Sciences ,Clinical Sciences ,Oncology and Carcinogenesis ,Lung ,Biomedical Imaging ,Clinical Research ,Cancer ,Lung Cancer ,Neurosciences ,4.2 Evaluation of markers and technologies ,4.1 Discovery and preclinical testing of markers and technologies ,Detection ,screening and diagnosis ,Good Health and Well Being ,radiomics ,machine learning ,survival ,lung cancer ,brain metastases ,brain MRI ,artificial intelligence ,Clinical sciences ,Oncology and carcinogenesis - Abstract
Background: Brain metastases are associated with poor survival. Molecular genetic testing informs on targeted therapy and survival. The purpose of this study was to perform a MR imaging-based radiomic analysis of brain metastases from non-small cell lung cancer (NSCLC) to identify radiomic features that were important for predicting survival duration. Methods: We retrospectively identified our study cohort via an institutional database search for patients with brain metastases from EGFR, ALK, and/or KRAS mutation-positive NSCLC. We segmented the brain metastatic tumors on the brain MR images, extracted radiomic features, constructed radiomic scores from significant radiomic features based on multivariate Cox regression analysis (p < 0.05), and built predictive models for survival duration. Result: Of the 110 patients in the cohort (mean age 57.51 ± 12.32 years; range: 22-85 years, M:F = 37:73), 75, 26, and 15 had NSCLC with EGFR, ALK, and KRAS mutations, respectively. Predictive modeling of survival duration using both clinical and radiomic features yielded areas under the receiver operative characteristic curve of 0.977, 0.905, and 0.947 for the EGFR, ALK, and KRAS mutation-positive groups, respectively. Radiomic scores enabled the separation of each mutation-positive group into two subgroups with significantly different survival durations, i.e., shorter vs. longer duration when comparing to the median survival duration of the group. Conclusion: Our data supports the use of radiomic scores, based on MR imaging of brain metastases from NSCLC, as non-invasive biomarkers for survival duration. Future research with a larger sample size and external cohorts is needed to validate our results.
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- 2021
9. Targeting ITGB4/SOX2-driven lung cancer stem cells using proteasome inhibitors
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Guo, Linlin, Mohanty, Atish, Singhal, Sharad, Srivastava, Saumya, Nam, Arin, Warden, Charles, Ramisetty, Sravani, Yuan, Yate-Ching, Cho, Hyejin, Wu, Xiwei, Li, Aimin, Vohra, Manik, Saladi, Srinivas Vinod, Wheeler, Deric, Arvanitis, Leonidas, Massarelli, Erminia, Kulkarni, Prakash, Zeng, Yiming, and Salgia, Ravi
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- 2023
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10. Intrinsically disordered proteins and conformational noise: The hypothesis a decade later
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Kulkarni, Prakash, Salgia, Ravi, and Rangarajan, Govindan
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- 2023
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11. Radiomic prediction of mutation status based on MR imaging of lung cancer brain metastases
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Chen, Bihong T, Jin, Taihao, Ye, Ningrong, Mambetsariev, Isa, Daniel, Ebenezer, Wang, Tao, Wong, Chi Wah, Rockne, Russell C, Colen, Rivka, Holodny, Andrei I, Sampath, Sagus, and Salgia, Ravi
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Biomedical and Clinical Sciences ,Clinical Sciences ,Oncology and Carcinogenesis ,Brain Cancer ,Lung Cancer ,Lung ,Rare Diseases ,Brain Disorders ,Cancer ,Clinical Research ,Biomedical Imaging ,Detection ,screening and diagnosis ,4.2 Evaluation of markers and technologies ,4.1 Discovery and preclinical testing of markers and technologies ,Good Health and Well Being ,Adult ,Aged ,Algorithms ,Anaplastic Lymphoma Kinase ,Area Under Curve ,Brain Neoplasms ,DNA Mutational Analysis ,ErbB Receptors ,Female ,Humans ,Lung Neoplasms ,Magnetic Resonance Imaging ,Male ,Middle Aged ,Mutation ,Neoplasm Metastasis ,Prognosis ,Proto-Oncogene Proteins p21(ras) ,Retrospective Studies ,Radiomics ,Predictive modeling ,Lung cancer ,Brain metastases ,Biomedical Engineering ,Cognitive Sciences ,Nuclear Medicine & Medical Imaging ,Clinical sciences - Abstract
Lung cancer metastases comprise most of all brain metastases in adults and most brain metastases are diagnosed by magnetic resonance (MR) scans. The purpose of this study was to conduct an MR imaging-based radiomic analysis of brain metastatic lesions from patients with primary lung cancer to classify mutational status of the metastatic disease. We retrospectively identified lung cancer patients with brain metastases treated at our institution between 2009 and 2017 who underwent genotype testing of their primary lung cancer. Brain MR Images were used for segmentation of enhancing tumors and peritumoral edema, and for radiomic feature extraction. The most relevant radiomic features were identified and used with clinical data to train random forest classifiers to classify the mutation status. Of 110 patients in the study cohort (mean age 57.51 ± 12.32 years; M: F = 37:73), 75 had an EGFR mutation, 21 had an ALK translocation, and 15 had a KRAS mutation. One patient had both ALK translocation and EGFR mutation. Majority of radiomic features most relevant for mutation classification were textural. Model building using both radiomic features and clinical data yielded more accurate classifications than using either alone. For classification of EGFR, ALK, and KRAS mutation status, the model built with both radiomic features and clinical data resulted in area-under-the-curve (AUC) values based on cross-validation of 0.912, 0.915, and 0.985, respectively. Our study demonstrated that MR imaging-based radiomic analysis of brain metastases in patients with primary lung cancer may be used to classify mutation status. This approach may be useful for devising treatment strategies and informing prognosis.
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- 2020
12. Differentiating Peripherally-Located Small Cell Lung Cancer From Non-small Cell Lung Cancer Using a CT Radiomic Approach
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Chen, Bihong T, Chen, Zikuan, Ye, Ningrong, Mambetsariev, Isa, Fricke, Jeremy, Daniel, Ebenezer, Wang, George, Wong, Chi Wah, Rockne, Russell C, Colen, Rivka R, Nasser, Mohd W, Batra, Surinder K, Holodny, Andrei I, Sampath, Sagus, and Salgia, Ravi
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Biomedical and Clinical Sciences ,Oncology and Carcinogenesis ,Lung Cancer ,Lung ,Cancer ,Clinical Research ,Biomedical Imaging ,Good Health and Well Being ,small cell lung cancer ,non-small cell lung cancer ,computed tomography radiomics ,non-linear classifier ,artificial neural network ,Clinical sciences ,Oncology and carcinogenesis - Abstract
Lung cancer can be classified into two main categories: small cell lung cancer (SCLC) and non-small cell lung cancer (NSCLC), which are different in treatment strategy and survival probability. The lung CT images of SCLC and NSCLC are similar such that their subtle differences are hardly visually discernible by the human eye through conventional imaging evaluation. We hypothesize that SCLC/NSCLC differentiation could be achieved via computerized image feature analysis and classification in feature space, as termed a radiomic model. The purpose of this study was to use CT radiomics to differentiate SCLC from NSCLC adenocarcinoma. Patients with primary lung cancer, either SCLC or NSCLC adenocarcinoma, were retrospectively identified. The post-diagnosis pre-treatment lung CT images were used to segment the lung cancers. Radiomic features were extracted from histogram-based statistics, textural analysis of tumor images and their wavelet transforms. A minimal-redundancy-maximal-relevance method was used for feature selection. The predictive model was constructed with a multilayer artificial neural network. The performance of the SCLC/NSCLC adenocarcinoma classifier was evaluated by the area under the receiver operating characteristic curve (AUC). Our study cohort consisted of 69 primary lung cancer patients with SCLC (n = 35; age mean ± SD = 66.91± 9.75 years), and NSCLC adenocarcinoma (n = 34; age mean ± SD = 58.55 ± 11.94 years). The SCLC group had more male patients and smokers than the NSCLC group (P < 0.05). Our SCLC/NSCLC classifier achieved an overall performance of AUC of 0.93 (95% confidence interval = [0.85, 0.97]), sensitivity = 0.85, and specificity = 0.85). Adding clinical data such as smoking history could improve the performance slightly. The top ranking radiomic features were mostly textural features. Our results showed that CT radiomics could quantitatively represent tumor heterogeneity and therefore could be used to differentiate primary lung cancer subtypes with satisfying results. CT image processing with the wavelet transformation technique enhanced the radiomic features for SCLC/NSCLC classification. Our pilot study should motivate further investigation of radiomics as a non-invasive approach for early diagnosis and treatment of lung cancer.
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- 2020
13. The gut microbiome and response to immune checkpoint inhibitors: preclinical and clinical strategies
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Gong, Jun, Chehrazi-Raffle, Alexander, Placencio-Hickok, Veronica, Guan, Michelle, Hendifar, Andrew, and Salgia, Ravi
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Nursing ,Health Sciences ,Genetics ,Human Genome ,Cancer ,4.1 Discovery and preclinical testing of markers and technologies ,Detection ,screening and diagnosis ,Gut microbiome ,Commensal bacteria ,Biomarkers ,PD-1 ,PD-L1 ,CTLA-4 ,Immune checkpoint inhibitors - Abstract
There is growing interest in identifying predictive biomarkers for inhibitors of programmed cell death protein 1 receptor (PD-1), programmed death ligand 1 (PD-L1), and cytotoxic T-lymphocyte associated protein 4 (CTLA-4). Given the links between the stool microbiota, anticancer immunosurveillance, and general health, the composition of the gut microbiome has recently undergone investigation as a biomarker for immunotherapy. In this review, we highlight published results from preclinical and clinical studies to date supporting a relationship between the gut microbiome and antitumor efficacy of immune checkpoint inhibitors. Despite the promising and hypothesis-generating findings that have been produced in this arena to date, there remain some inconsistencies amongst present data that may need to be resolved to contribute to further development. Among these, a better understanding of the immunomodulatory function of the microbiome, standardization in sampling, sequencing techniques, and data analysis, and ensuring uniformity across various aspects of study design are warranted in conducting future prospective studies seeking to validate the gut microbiome as a potential biomarker of response to checkpoint blockade.
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- 2019
14. Integration of artificial intelligence in lung cancer: Rise of the machine
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Ladbury, Colton, Amini, Arya, Govindarajan, Ameish, Mambetsariev, Isa, Raz, Dan J., Massarelli, Erminia, Williams, Terence, Rodin, Andrei, and Salgia, Ravi
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- 2023
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15. Leveraging Cancer Phenotypic Plasticity for Novel Treatment Strategies
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Ramisetty, Sravani, primary, Subbalakshmi, Ayalur Raghu, additional, Pareek, Siddhika, additional, Mirzapoiazova, Tamara, additional, Do, Dana, additional, Prabhakar, Dhivya, additional, Pisick, Evan, additional, Shrestha, Sagun, additional, Achuthan, Srisairam, additional, Bhattacharya, Supriyo, additional, Malhotra, Jyoti, additional, Mohanty, Atish, additional, Singhal, Sharad S., additional, Salgia, Ravi, additional, and Kulkarni, Prakash, additional
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- 2024
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16. Monitoring and Determining Mitochondrial Network Parameters in Live Lung Cancer Cells.
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Mirzapoiazova, Tamara, Li, Haiqing, Nathan, Anusha, Srivstava, Saumya, Nasser, Mohd W, Lennon, Frances, Armstrong, Brian, Mambetsariev, Isa, Chu, Peiguo G, Achuthan, Srisairam, Batra, Surinder K, Kulkarni, Prakash, and Salgia, Ravi
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dynamics ,fractals ,imaging ,lung cancer ,mitochondria ,morphology ,scanning electron microscopy ,Clinical Sciences - Abstract
Mitochondria are dynamic organelles that constantly fuse and divide, forming dynamic tubular networks. Abnormalities in mitochondrial dynamics and morphology are linked to diverse pathological states, including cancer. Thus, alterations in mitochondrial parameters could indicate early events of disease manifestation or progression. However, finding reliable and quantitative tools for monitoring mitochondria and determining the network parameters, particularly in live cells, has proven challenging. Here, we present a 2D confocal imaging-based approach that combines automatic mitochondrial morphology and dynamics analysis with fractal analysis in live small cell lung cancer (SCLC) cells. We chose SCLC cells as a test case since they typically have very little cytoplasm, but an abundance of smaller mitochondria compared to many of the commonly used cell types. The 2D confocal images provide a robust approach to quantitatively measure mitochondrial dynamics and morphology in live cells. Furthermore, we performed 3D reconstruction of electron microscopic images and show that the 3D reconstruction of the electron microscopic images complements this approach to yield better resolution. The data also suggest that the parameters of mitochondrial dynamics and fractal dimensions are sensitive indicators of cellular response to subtle perturbations, and hence, may serve as potential markers of drug response in lung cancer.
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- 2019
17. Phenotypic Switching of Naïve T Cells to Immune-Suppressive Treg-Like Cells by Mutant KRAS.
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Kalvala, Arjun, Wallet, Pierre, Yang, Lu, Wang, Chongkai, Li, Haiqing, Nam, Arin, Nathan, Anusha, Mambetsariev, Isa, Poroyko, Valeriy, Gao, Hanlin, Chu, Peiguo, Sattler, Martin, Bild, Andrea, Manuel, Edwin R, Lee, Peter P, Jolly, Mohit Kumar, Kulkarni, Prakash, and Salgia, Ravi
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FOXP3 ,KRAS ,Tregs ,cell-extrinsic ,lung cancer ,phenotypic switching ,Clinical Sciences - Abstract
Oncogenic (mutant) Ras protein Kirsten rat sarcoma viral oncogene homolog (KRAS) promotes uncontrolled proliferation, altered metabolism, and loss of genome integrity in a cell-intrinsic manner. Here, we demonstrate that CD4+ T cells when incubated with tumor-derived exosomes from mutant (MT) KRAS non-small-cell lung cancer (NSCLC) cells, patient sera, or a mouse xenograft model, induce phenotypic conversion to FOXP3+ Treg-like cells that are immune-suppressive. Furthermore, transfecting T cells with MT KRAS cDNA alone induced phenotypic switching and mathematical modeling supported this conclusion. Single-cell sequencing identified the interferon pathway as the mechanism underlying the phenotypic switch. These observations highlight a novel cytokine-independent, cell-extrinsic role for KRAS in T cell phenotypic switching. Thus, targeting this new class of Tregs represents a unique therapeutic approach for NSCLC. Since KRAS is the most frequently mutated oncogene in a wide variety of cancers, the findings of this investigation are likely to be of broad interest and have a large scientific impact.
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- 2019
18. EPHA2 mutations with oncogenic characteristics in squamous cell lung cancer and malignant pleural mesothelioma.
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Tan, Yi-Hung Carol, Srivastava, Saumya, Won, Brian M, Kanteti, Rajani, Arif, Qudsia, Husain, Aliya N, Li, Hubert, Vigneswaran, Wickii T, Pang, Ka-Ming, Kulkarni, Prakash, Sattler, Martin, Vaidehi, Nagarajan, Mambetsariev, Isa, Kindler, Hedy L, Wheeler, Deric L, and Salgia, Ravi
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Biochemistry and Cell Biology ,Genetics ,Oncology and Carcinogenesis - Abstract
Squamous cell carcinoma (SCC) and malignant pleural mesothelioma (MPM) are thoracic malignancies with very poor prognosis and limited treatment options. It is an established fact that most of the solid tumors have overexpression of EPHA2 receptor tyrosine kinase. EPHA2 is known to exhibit opposing roles towards cancer progression. It functions in inhibiting cancer survival and migration via a ligand and tyrosine kinase dependent signaling (Y772). Whereas it is known to promote tumor progression and cell migration through a ligand-independent signaling (S897). We analyzed the expression profile and mutational status of the ephrin receptor A2 (EPHA2) in SCC and MPM cell lines and primary patient specimens. The EPHA2 receptor was found to be either overexpressed, mutated or amplified in SCC and MPM. In particular, the EPHA2 mutants A859D and T647M were interesting to explore, A859D Y772 dead mutant exhibited lower levels of phosphorylation at Y772 compared to T647M mutant. Molecular Dynamics simulations studies suggested that differential changes in conformation might form the structural basis for differences in the level of EPHA2 activation. Consequently, A859D mutant cells exhibited increased proliferation as well as cell migration compared to controls and T647M mutant. Kinomics analysis demonstrated that the STAT3 and PDGF pathways were upregulated whereas signaling through CBL was suppressed. Considered together, the present work has uncovered the oncogenic characteristics of EPHA2 mutations in SSC and MPM reinstating the dynamics of different roles of EPHA2 in cancer. This study also suggests that a combination of doxazosin and other EPHA2 inhibitors directed to inhibit the pertinent signaling components may be a novel therapeutic strategy for MPM and Non-small cell lung cancer patients who have either EPHA2 or CBL alterations.
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- 2019
19. Small Cell Lung Cancer Therapeutic Responses Through Fractal Measurements: From Radiology to Mitochondrial Biology.
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Mambetsariev, Isa, Mirzapoiazova, Tamara, Lennon, Frances, Jolly, Mohit Kumar, Li, Haiqing, Nasser, Mohd W, Vora, Lalit, Kulkarni, Prakash, Batra, Surinder K, and Salgia, Ravi
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fractal dimension ,lacunarity ,mitochondria ,radiology ,small cell lung cancer ,Clinical Sciences - Abstract
Small cell lung cancer (SCLC) is an aggressive neuroendocrine disease with an overall 5 year survival rate of ~7%. Although patients tend to respond initially to therapy, therapy-resistant disease inevitably emerges. Unfortunately, there are no validated biomarkers for early-stage SCLC to aid in early detection. Here, we used readouts of lesion image characteristics and cancer morphology that were based on fractal geometry, namely fractal dimension (FD) and lacunarity (LC), as novel biomarkers for SCLC. Scanned tumors of patients before treatment had a high FD and a low LC compared to post treatment, and this effect was reversed after treatment, suggesting that these measurements reflect the initial conditions of the tumor, its growth rate, and the condition of the lung. Fractal analysis of mitochondrial morphology showed that cisplatin-treated cells showed a discernibly decreased LC and an increased FD, as compared with control. However, treatment with mdivi-1, the small molecule that attenuates mitochondrial division, was associated with an increase in FD as compared with control. These data correlated well with the altered metabolic functions of the mitochondria in the diseased state, suggesting that morphological changes in the mitochondria predicate the tumor's future ability for mitogenesis and motogenesis, which was also observed on the CT scan images. Taken together, FD and LC present ideal tools to differentiate normal tissue from malignant SCLC tissue as a potential diagnostic biomarker for SCLC.
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- 2019
20. Structural and Dynamical Order of a Disordered Protein: Molecular Insights into Conformational Switching of PAGE4 at the Systems Level.
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Lin, Xingcheng, Kulkarni, Prakash, Bocci, Federico, Schafer, Nicholas P, Roy, Susmita, Tsai, Min-Yeh, He, Yanan, Chen, Yihong, Rajagopalan, Krithika, Mooney, Steven M, Zeng, Yu, Weninger, Keith, Grishaev, Alex, Onuchic, José N, Levine, Herbert, Wolynes, Peter G, Salgia, Ravi, Rangarajan, Govindan, Uversky, Vladimir, Orban, John, and Jolly, Mohit Kumar
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Humans ,Antigens ,Neoplasm ,Protein Conformation ,Molecular Dynamics Simulation ,Intrinsically Disordered Proteins ,PAGE4 ,conformational plasticity ,intrinsically disordered proteins ,order–disorder transition ,phosphorylation ,order-disorder transition ,Biochemistry and Cell Biology - Abstract
Folded proteins show a high degree of structural order and undergo (fairly constrained) collective motions related to their functions. On the other hand, intrinsically disordered proteins (IDPs), while lacking a well-defined three-dimensional structure, do exhibit some structural and dynamical ordering, but are less constrained in their motions than folded proteins. The larger structural plasticity of IDPs emphasizes the importance of entropically driven motions. Many IDPs undergo function-related disorder-to-order transitions driven by their interaction with specific binding partners. As experimental techniques become more sensitive and become better integrated with computational simulations, we are beginning to see how the modest structural ordering and large amplitude collective motions of IDPs endow them with an ability to mediate multiple interactions with different partners in the cell. To illustrate these points, here, we use Prostate-associated gene 4 (PAGE4), an IDP implicated in prostate cancer (PCa) as an example. We first review our previous efforts using molecular dynamics simulations based on atomistic AWSEM to study the conformational dynamics of PAGE4 and how its motions change in its different physiologically relevant phosphorylated forms. Our simulations quantitatively reproduced experimental observations and revealed how structural and dynamical ordering are encoded in the sequence of PAGE4 and can be modulated by different extents of phosphorylation by the kinases HIPK1 and CLK2. This ordering is reflected in changing populations of certain secondary structural elements as well as in the regularity of its collective motions. These ordered features are directly correlated with the functional interactions of WT-PAGE4, HIPK1-PAGE4 and CLK2-PAGE4 with the AP-1 signaling axis. These interactions give rise to repeated transitions between (high HIPK1-PAGE4, low CLK2-PAGE4) and (low HIPK1-PAGE4, high CLK2-PAGE4) cell phenotypes, which possess differing sensitivities to the standard PCa therapies, such as androgen deprivation therapy (ADT). We argue that, although the structural plasticity of an IDP is important in promoting promiscuous interactions, the modulation of the structural ordering is important for sculpting its interactions so as to rewire with agility biomolecular interaction networks with significant functional consequences.
- Published
- 2019
21. Combination systemic therapies with immune checkpoint inhibitors in pancreatic cancer: overcoming resistance to single‐agent checkpoint blockade
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Gong, Jun, Hendifar, Andrew, Tuli, Richard, Chuang, Jeremy, Cho, May, Chung, Vincent, Li, Daneng, and Salgia, Ravi
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Nursing ,Health Sciences ,Rare Diseases ,Digestive Diseases ,Cancer ,Orphan Drug ,Pancreatic Cancer ,6.1 Pharmaceuticals ,Evaluation of treatments and therapeutic interventions ,Development of treatments and therapeutic interventions ,5.1 Pharmaceuticals ,Pancreatic cancer ,Checkpoint inhibitor ,Combination therapy ,Immuno-oncology ,Clinical trials - Abstract
Immune checkpoint inhibitors have demonstrated broad single-agent antitumor activity and a favorable safety profile that render them attractive agents to combine with other systemic anticancer therapies. Pancreatic cancer has been fairly resistant to monotherapy blockade of programmed cell death protein 1 receptor, programmed death ligand 1, and cytotoxic T-lymphocyte associated protein 4. However, there is a growing body of preclinical evidence to support the rational combination of checkpoint inhibitors and various systemic therapies in pancreatic cancer. Furthermore, early clinical evidence has begun to support the feasibility and efficacy of checkpoint inhibitor-based combination therapy in advanced pancreatic cancer. Despite accumulating preclinical and clinical data, there remains several questions as to the optimal dosing and timing of administration of respective agents, toxicity of combination strategies, and mechanisms by which immune resistance to single-agent checkpoint blockade are overcome. Further development of biomarkers is also important in the advancement of combination systemic therapies incorporating checkpoint blockade in pancreatic cancer. Results from an impressive number of ongoing prospective clinical trials are eagerly anticipated and will seek to validate the viability of combination immuno-oncology strategies in pancreatic cancer.
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- 2018
22. Development of PD-1 and PD-L1 inhibitors as a form of cancer immunotherapy: a comprehensive review of registration trials and future considerations
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Gong, Jun, Chehrazi-Raffle, Alexander, Reddi, Srikanth, and Salgia, Ravi
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Biomedical and Clinical Sciences ,Oncology and Carcinogenesis ,Immunology ,Clinical Trials and Supportive Activities ,Prevention ,Immunization ,Cancer ,Brain Disorders ,Vaccine Related ,Clinical Research ,5.1 Pharmaceuticals ,Development of treatments and therapeutic interventions ,Antibodies ,Monoclonal ,Humans ,Immunotherapy ,Neoplasms ,Programmed Cell Death 1 Receptor ,Registries ,PD-1 inhibitor ,PD-L1 inhibitor ,Clinical trials ,Biomarkers ,Immune checkpoint ,Hyperprogressors ,Treatment beyond progression ,Microbiome ,Immune-related toxicity ,Oncology and carcinogenesis - Abstract
Early preclinical evidence provided the rationale for programmed cell death 1 (PD-1) and programmed death ligand 1 (PD-L1) blockade as a potential form of cancer immunotherapy given that activation of the PD-1/PD-L1 axis putatively served as a mechanism for tumor evasion of host tumor antigen-specific T-cell immunity. Early-phase studies investigating several humanized monoclonal IgG4 antibodies targeting PD-1 and PD-L1 in advanced solid tumors paved way for the development of the first PD-1 inhibitors, nivolumab and pembrolizumab, approved by the Food and Drug Administration (FDA) in 2014. The number of FDA-approved agents of this class is rapidly enlarging with indications for treatment spanning across a spectrum of malignancies. The purpose of this review is to highlight the clinical development of PD-1 and PD-L1 inhibitors in cancer therapy to date. In particular, we focus on detailing the registration trials that have led to FDA-approved indications of anti-PD-1 and anti-PD-L1 therapies in cancer. As the number of PD-1/PD-L1 inhibitors continues to grow, predictive biomarkers, mechanisms of resistance, hyperprogressors, treatment duration and treatment beyond progression, immune-related toxicities, and clinical trial design are key concepts in need of further consideration to optimize the anticancer potential of this class of immunotherapy.
- Published
- 2018
23. Effective osimertinib treatment in a patient with discordant T790 M mutation detection between liquid biopsy and tissue biopsy
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Mambetsariev, Isa, Vora, Lalit, Yu, Kim Wai, and Salgia, Ravi
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Biomedical and Clinical Sciences ,Clinical Sciences ,Oncology and Carcinogenesis ,Lung Cancer ,Rare Diseases ,Lung ,Clinical Research ,Cancer ,Good Health and Well Being ,Acrylamides ,Alleles ,Amino Acid Substitution ,Aniline Compounds ,Antineoplastic Agents ,Biomarkers ,Tumor ,Biopsy ,Carcinoma ,Non-Small-Cell Lung ,ErbB Receptors ,Humans ,Liquid Biopsy ,Lung Neoplasms ,Magnetic Resonance Angiography ,Male ,Middle Aged ,Mutation ,Neoplasms ,Piperazines ,Protein Kinase Inhibitors ,Tomography ,X-Ray Computed ,Case report ,Dose ,EGFR T790 M-positive NSCLC ,Liquid biopsy ,Osimertinib ,Progression ,Public Health and Health Services ,Oncology & Carcinogenesis ,Oncology and carcinogenesis ,Epidemiology - Abstract
BackgroundWe report the successful treatment of the patient with osimertinib 80 mg/day following disease progression and a discordance in the detection of a mechanism of resistance epithelial growth factor receptor (EGFR) T790 M between liquid biopsy and tissue biopsy methods.Case presentationA 57-year-old Hispanic male patient initially diagnosed with an EGFR 19 deletion positive lung adenocarcinoma and clinically responded to initial erlotinib treatment. The patient subsequently progressed on erlotinib 150 mg/day and repeat biopsies both tissue and liquid were sent for next-generation sequencing (NGS). A T790 M EGFR mutation was detected in the blood sample using a liquid biopsy technique, but the tissue biopsy failed to show a T790 M mutation in a newly biopsied tissue sample. He was then successfully treated with osimertinib 80 mg/day, has clinically and radiologically responded, and remains on osimertinib treatment after 10 months.ConclusionsSecond-line osimertinib treatment, when administered at 80 mg/day, is both well tolerated and efficacious in a patient with previously erlotinib treated lung adenocarcinoma and a T790 M mutation detected by liquid biopsy.
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- 2018
24. AXL regulates neuregulin1 expression leading to cetuximab resistance in head and neck cancer
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Iida, Mari, McDaniel, Nellie K., Kostecki, Kourtney L., Welke, Noah B., Kranjac, Carlene A., Liu, Peng, Longhurst, Colin, Bruce, Justine Y., Hong, Seungpyo, Salgia, Ravi, and Wheeler, Deric L.
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- 2022
- Full Text
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25. Next-Generation Immunotherapy: Advancing Clinical Applications in Cancer Treatment.
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Garg, Pankaj, Pareek, Siddhika, Kulkarni, Prakash, Horne, David, Salgia, Ravi, and Singhal, Sharad S.
- Abstract
Next-generation immunotherapies have revolutionized cancer treatment, offering hope for patients with hard-to-treat tumors. This review focuses on the clinical applications and advancements of key immune-based therapies, including immune checkpoint inhibitors, CAR-T cell therapy, and new cancer vaccines designed to harness the immune system to combat malignancies. A prime example is the success of pembrolizumab in the treatment of advanced melanoma, underscoring the transformative impact of these therapies. Combination treatments, integrating immunotherapy with chemotherapy, radiation, and targeted therapies, are demonstrating synergistic benefits and improving patient outcomes. This review also explores the evolving role of personalized immunotherapy, guided by biomarkers, genomic data, and the tumor environment, to better target individual tumors. Although significant progress has been made, challenges such as resistance, side effects, and high treatment costs persist. Technological innovations, including nanotechnology and artificial intelligence, are explored as future enablers of these therapies. The review evaluates key clinical trials, breakthroughs, and the emerging immune-modulating agents and advanced delivery systems that hold great promise for enhancing treatment efficacy, reducing toxicity, and expanding access to immunotherapy. In conclusion, this review highlights the ongoing advancements in immunotherapy that are reshaping cancer care, with future strategies poised to overcome current challenges and further extend therapeutic reach. [ABSTRACT FROM AUTHOR]
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- 2024
- Full Text
- View/download PDF
26. Protein conformational dynamics and phenotypic switching
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Kulkarni, Prakash, Achuthan, Srisairam, Bhattacharya, Supriyo, Jolly, Mohit Kumar, Kotnala, Sourabh, Leite, Vitor B. P., Mohanty, Atish, Orban, John, Roy, Susmita, Rangarajan, Govindan, and Salgia, Ravi
- Published
- 2021
- Full Text
- View/download PDF
27. A pharmacodynamic study of sirolimus and metformin in patients with advanced solid tumors
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Sehdev, Amikar, Karrison, Theodore, Zha, Yuanyuan, Janisch, Linda, Turcich, Michelle, Cohen, Ezra EW, Maitland, Michael, Polite, Blase N, Gajewski, Thomas F, Salgia, Ravi, Pinto, Navin, Bissonnette, Marc B, Fleming, Gini F, Ratain, Mark J, and Sharma, Manish R
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Biomedical and Clinical Sciences ,Clinical Sciences ,Cancer ,Clinical Trials and Supportive Activities ,Clinical Research ,Evaluation of treatments and therapeutic interventions ,6.1 Pharmaceuticals ,Adolescent ,Adult ,Aged ,Aged ,80 and over ,Antineoplastic Combined Chemotherapy Protocols ,Biomarkers ,Tumor ,Drug Synergism ,Female ,Humans ,Leukocytes ,Mononuclear ,Male ,Metformin ,Middle Aged ,Neoplasms ,Phosphorylation ,Pilot Projects ,Ribosomal Protein S6 Kinases ,70-kDa ,Sirolimus ,TOR Serine-Threonine Kinases ,Young Adult ,P70S6K and mTOR ,Pharmacodynamics ,Solid tumors ,Pharmacology and Pharmaceutical Sciences ,Oncology & Carcinogenesis ,Oncology and carcinogenesis ,Pharmacology and pharmaceutical sciences - Abstract
BackgroundSirolimus is a mammalian target of rapamycin (mTOR) inhibitor. Metformin may potentiate mTOR inhibition by sirolimus while mitigating its adverse effects. We conducted a pilot study to test this hypothesis.MethodsPatients with advanced solid tumor were treated with sirolimus for 7 days followed by randomization to either sirolimus with metformin (Arm A) or sirolimus (Arm B) until day 21. From day 22 onwards, all patients received sirolimus and metformin. The primary aim was to compare the change in phospho-p70S6K (pp70S6K) in peripheral blood mononuclear cells (PBMC) from day 8 to day 22 using a two-sample t test. Secondary aims were objective response rate, toxicity, and other serum pharmacodynamic biomarkers (e.g., fasting glucose, triglycerides, insulin, C-peptide, IGF-1, IGF-1R, IGF-BP, and leptin).Results24 patients were enrolled, with 18 evaluable for the primary endpoint. There was no significant difference in mean change in pp70S6K in arm A vs. arm B (- 0.12 vs. - 0.16; P = 0.64). Similarly, there were no significant differences in other serum pharmacodynamic biomarkers. There were no partial responses. There were no dose-limiting or unexpected toxicities.ConclusionsAdding metformin to sirolimus, although well tolerated, was not associated with significant changes in pp70S6K in PBMC or other serum pharmacodynamic biomarkers.ImpactCombining metformin with sirolimus did not improve mTOR inhibition.
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- 2018
28. Prostate-Associated Gene 4 (PAGE4): Leveraging the Conformational Dynamics of a Dancing Protein Cloud as a Therapeutic Target.
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Salgia, Ravi, Jolly, Mohit Kumar, Dorff, Tanya, Lau, Clayton, Weninger, Keith, Orban, John, and Kulkarni, Prakash
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ADT ,Cancer/Testis Antigen ,IAD ,PAGE4 ,prostate cancer ,symptomatic BPH ,Clinical Sciences - Abstract
Prostate cancer (PCa) is a leading cause of mortality and morbidity globally. While genomic alterations have been identified in PCa, in contrast to some other cancers, use of such information to personalize treatment is still in its infancy. Here, we discuss how PAGE4, a protein which appears to act both as an oncogenic factor as well as a metastasis suppressor, is a novel therapeutic target for PCa. Inhibiting PAGE4 may be a viable strategy for low-risk PCa where it is highly upregulated. Conversely, PAGE4 expression is downregulated in metastatic PCa and, therefore, reinstituting its sustained expression may be a promising option to subvert or attenuate androgen-resistant PCa. Thus, fine-tuning the levels of PAGE4 may represent a novel approach for personalized medicine in PCa.
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- 2018
29. Phase 1 Study of Accelerated Hypofractionated Radiation Therapy With Concurrent Chemotherapy for Stage III Non-Small Cell Lung Cancer: CALGB 31102 (Alliance).
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Urbanic, James J, Wang, Xiaofei, Bogart, Jeffrey A, Stinchcombe, Thomas E, Hodgson, Lydia, Schild, Steven E, Bazhenova, Lyudmila, Hahn, Olwen, Salgia, Ravi, and Vokes, Everett E
- Subjects
Humans ,Carcinoma ,Non-Small-Cell Lung ,Lung Neoplasms ,Hemoptysis ,Radiation Pneumonitis ,Paclitaxel ,Carboplatin ,Antineoplastic Combined Chemotherapy Protocols ,Area Under Curve ,Cohort Studies ,Maximum Tolerated Dose ,Aged ,Middle Aged ,Female ,Male ,Consolidation Chemotherapy ,Radiation Dose Hypofractionation ,Progression-Free Survival ,Clinical Research ,Lung Cancer ,Cancer ,Patient Safety ,Lung ,6.5 Radiotherapy and other non-invasive therapies ,Evaluation of treatments and therapeutic interventions ,6.2 Cellular and gene therapies ,6.1 Pharmaceuticals ,Other Physical Sciences ,Clinical Sciences ,Oncology and Carcinogenesis ,Oncology & Carcinogenesis - Abstract
PurposeTo investigate the safety of accelerated hypofractionated radiation therapy (AHRT) with concurrent chemotherapy (CT) for inoperable stage III non-small cell lung cancer (NSCLC).Patients and methodsThe primary objectives were to define the maximally tolerable course of accelerated radiation therapy and to describe toxicities of therapy. Total radiation therapy remained at 60 Gy. The number of once-daily fractions in each successive cohort was reduced as follows: cohort 1, 60 Gy in 27 fractions; cohort 2, 60 Gy in 24 fractions; cohort 3, 60 Gy in 22 fractions; and cohort 4, 60 Gy in 20 fractions. Concurrent treatment consisted of weekly carboplatin area under the curve (AUC) 2 and paclitaxel 45 mg/m2. Consolidation treatment consisted of carboplatin AUC 6 and paclitaxel 200 mg/m2 every weeks × 2 cycles. Maximum tolerated dose: Of 6 patients/cohort, ≤2 patients experienced grade ≥3 toxicity, and ≤1 patient experienced grade ≥4 toxicity.Results22 patients were accrued; of those, 21 patients were evaluable between July 2012 and May 2014. Grade 5 toxicity occurred in 3 patients: 1 patient in cohort 2 (hemoptysis), 2 patients in cohort 3 (hemoptysis, pneumonitis). The maximum tolerated dose (MTD) was defined by cohort 2 (60 Gy in 2.5 Gy/fraction). Time to grade 5 toxicity was 9 months, 6 months, and 9 months after the start of treatment. The median follow-up time was 23.0 months (range, 7.6-30.6 months) in living patients, the median overall survival was 19.3 months (95% confidence interval [CI] 9.3-34.0 months), and the median progression-free survival was 12.2 months (95% CI 6.1-22.5 months).ConclusionsOnly modest hypofractionation was achievable as a result of long-term toxicities. Nevertheless, the MTD of 60 Gy given at 2.5 Gy/fraction allows completion of RT in 20% fewer treatments than conventional therapy. Further investigation of AHRT may help to better define the therapeutic index.
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- 2018
30. B-Cell-Specific Diversion of Glucose Carbon Utilization Reveals a Unique Vulnerability in B Cell Malignancies
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Xiao, Gang, Chan, Lai N, Klemm, Lars, Braas, Daniel, Chen, Zhengshan, Geng, Huimin, Zhang, Qiuyi Chen, Aghajanirefah, Ali, Cosgun, Kadriye Nehir, Sadras, Teresa, Lee, Jaewoong, Mirzapoiazova, Tamara, Salgia, Ravi, Ernst, Thomas, Hochhaus, Andreas, Jumaa, Hassan, Jiang, Xiaoyan, Weinstock, David M, Graeber, Thomas G, and Müschen, Markus
- Subjects
Cancer ,Aetiology ,2.1 Biological and endogenous factors ,Animals ,B-Lymphocytes ,Carbon ,Cell Line ,Tumor ,Cell Survival ,Glucose ,Glucosephosphate Dehydrogenase ,Glycolysis ,Humans ,Ikaros Transcription Factor ,Mice ,Mice ,Inbred C57BL ,Mice ,Inbred NOD ,Oxidative Stress ,PAX5 Transcription Factor ,Pentose Phosphate Pathway ,Precursor Cell Lymphoblastic Leukemia-Lymphoma ,Protein Phosphatase 2 ,Proto-Oncogene Proteins c-bcl-2 ,Transcription ,Genetic ,B cell malignancies ,G6PD ,PP2A ,glucose metabolism ,lineage-specific vulnerability ,redox homeostasis ,transcriptional repression ,Biological Sciences ,Medical and Health Sciences ,Developmental Biology - Abstract
B cell activation during normal immune responses and oncogenic transformation impose increased metabolic demands on B cells and their ability to retain redox homeostasis. While the serine/threonine-protein phosphatase 2A (PP2A) was identified as a tumor suppressor in multiple types of cancer, our genetic studies revealed an essential role of PP2A in B cell tumors. Thereby, PP2A redirects glucose carbon utilization from glycolysis to the pentose phosphate pathway (PPP) to salvage oxidative stress. This unique vulnerability reflects constitutively low PPP activity in B cells and transcriptional repression of G6PD and other key PPP enzymes by the B cell transcription factors PAX5 and IKZF1. Reflecting B-cell-specific transcriptional PPP-repression, glucose carbon utilization in B cells is heavily skewed in favor of glycolysis resulting in lack of PPP-dependent antioxidant protection. These findings reveal a gatekeeper function of the PPP in a broad range of B cell malignancies that can be efficiently targeted by small molecule inhibition of PP2A and G6PD.
- Published
- 2018
31. A phase I open-label dose-escalation study of the anti-HER3 monoclonal antibody LJM716 in patients with advanced squamous cell carcinoma of the esophagus or head and neck and HER2-overexpressing breast or gastric cancer
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Reynolds, Kerry Lynn, Bedard, Philippe L, Lee, Se-Hoon, Lin, Chia-Chi, Tabernero, Josep, Alsina, Maria, Cohen, Ezra, Baselga, José, Blumenschein, George, Graham, Donna M, Garrido-Laguna, Ignacio, Juric, Dejan, Sharma, Sunil, Salgia, Ravi, Seroutou, Abdelkader, Tian, Xianbin, Fernandez, Rose, Morozov, Alex, Sheng, Qing, Ramkumar, Thiruvamoor, Zubel, Angela, and Bang, Yung-Jue
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Breast Cancer ,Clinical Research ,Clinical Trials and Supportive Activities ,Cancer ,Rare Diseases ,6.1 Pharmaceuticals ,Evaluation of treatments and therapeutic interventions ,6.2 Cellular and gene therapies ,Adult ,Aged ,Antineoplastic Agents ,Immunological ,Bayes Theorem ,Breast Neoplasms ,Carcinoma ,Squamous Cell ,Dose-Response Relationship ,Drug ,Esophageal Neoplasms ,Female ,Head and Neck Neoplasms ,Humans ,Male ,Maximum Tolerated Dose ,Middle Aged ,Receptor ,ErbB-2 ,Receptor ,ErbB-3 ,Squamous Cell Carcinoma of Head and Neck ,Stomach Neoplasms ,Phase I ,HER3 ,HER2 ,Monoclonal antibody ,LJM716 ,Receptor ,erbB-2 ,Receptor ,erbB-3 ,Oncology and Carcinogenesis ,Public Health and Health Services ,Oncology & Carcinogenesis - Abstract
BackgroundHuman epidermal growth factor receptor 3 (HER3) is important in maintaining epidermal growth factor receptor-driven cancers and mediating resistance to targeted therapy. A phase I study of anti-HER3 monoclonal antibody LJM716 was conducted with the primary objective to identify the maximum tolerated dose (MTD) and/or recommended dose for expansion (RDE), and dosing schedule. Secondary objectives were to characterize safety/tolerability, pharmacokinetics, pharmacodynamics, and preliminary antitumor activity.MethodsThis open-label, dose-finding study comprised dose escalation, followed by expansion in patients with squamous cell carcinoma of the head and neck or esophagus, and HER2-overexpressing metastatic breast cancer or gastric cancer. During dose escalation, patients received LJM716 intravenous once weekly (QW) or every two weeks (Q2W), in 28-day cycles. An adaptive Bayesian logistic regression model was used to guide dose escalation and establish the RDE. Exploratory pharmacodynamic tumor studies evaluated modulation of HER3 signaling.ResultsPatients received LJM716 3-40 mg/kg QW and 20 mg/kg Q2W (54 patients; 36 patients at 40 mg/kg QW). No dose-limiting toxicities (DLTs) were reported during dose-escalation. One patient experienced two DLTs (diarrhea, hypokalemia [both grade 3]) in the expansion phase. The RDE was 40 mg/kg QW, providing drug levels above the preclinical minimum effective concentration. One patient with gastric cancer had an unconfirmed partial response; 17/54 patients had stable disease, two lasting >30 weeks. Down-modulation of phospho-HER3 was observed in paired tumor samples.ConclusionsLJM716 was well tolerated; the MTD was not reached, and the RDE was 40 mg/kg QW. Further development of LJM716 is ongoing.Trial registrationClinicaltrials.gov registry number NCT01598077 (registered on 4 May, 2012).
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- 2017
32. Leveraging deep learning algorithms for synthetic data generation to design and analyze biological networks
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Achuthan, Srisairam, Chatterjee, Rishov, Kotnala, Sourabh, Mohanty, Atish, Bhattacharya, Supriyo, Salgia, Ravi, and Kulkarni, Prakash
- Published
- 2022
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33. MerTK Drives Proliferation and Metastatic Potential in Triple-Negative Breast Cancer
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Iida, Mari, primary, Crossman, Bridget E., additional, Kostecki, Kourtney L., additional, Glitchev, Christine E., additional, Kranjac, Carlene A., additional, Crow, Madisen T., additional, Adams, Jillian M., additional, Liu, Peng, additional, Ong, Irene, additional, Yang, David T., additional, Kang, Irene, additional, Salgia, Ravi, additional, and Wheeler, Deric L., additional
- Published
- 2024
- Full Text
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34. A novel HLA-DQB2::MET gene fusion variant in lung adenocarcinoma with prolonged response to tepotinib: a case report
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Dias e Silva, Douglas, primary, Mambetsariev, Isa, additional, Fricke, Jeremy, additional, Babikian, Razmig, additional, Dingal, Shaira Therese, additional, Mazdisnian, Farhad, additional, Badie, Behnam, additional, Arvanitis, Leonidas, additional, Afkhami, Michelle, additional, Villalona-Calero, Miguel, additional, and Salgia, Ravi, additional
- Published
- 2024
- Full Text
- View/download PDF
35. Comprehending phenotypic plasticity in cancer and evolution
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Kulkarni, Prakash, primary and Salgia, Ravi, additional
- Published
- 2024
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36. Durvalumab for Stage III EGFR-Mutated NSCLC After Definitive Chemoradiotherapy
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Aredo, Jacqueline V., Mambetsariev, Isa, Hellyer, Jessica A., Amini, Arya, Neal, Joel W., Padda, Sukhmani K., McCoach, Caroline E., Riess, Jonathan W., Cabebe, Elwyn C., Naidoo, Jarushka, Abuali, Tariq, Salgia, Ravi, Loo, Billy W., Jr., Diehn, Maximilian, Han, Summer S., and Wakelee, Heather A.
- Published
- 2021
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37. Integrating Clinical and Translational Research Networks-Building Team Medicine.
- Author
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Salgia, Ravi, Kulkarni, Prakash, and Salgia, Ravi
- Subjects
Medicine ,COVID-19 ,Early Recovery After Surgery (ERAS) ,HER2-directed therapy ,PARP inhibitor ,academic and community oncology ,academic cancer center ,actionable mutations ,adjuvant chemotherapy ,bladder cancer ,breast cancer ,cancer care plans ,cancer center ,cancer clinical trials ,cancer genetics ,cancer genomics ,cancer prevention ,clinical research ,clinical trials ,colorectal cancer ,community ,community oncology ,community practice ,concurrent chemoradiation therapy ,driver mutations ,epithelial ovarian cancer ,ethnicity ,fast-and-frugal trees ,feeding tube dependency ,frontline treatment ,genetics counseling ,geriatric oncology ,human papillomavirus ,immunotherapy ,integrated cancer care ,low-dose CT scans ,lung cancer ,lung cancer screening ,maintenance therapy ,minorities ,n/a ,national guidelines for screening and prevention ,next-generation sequencing ,non-small cell lung cancer ,older adults ,oncology medical home ,oncology pathways ,oropharyngeal cancer ,personalized medicine ,pharmaceutical aids to smoking cessation ,precisian medicine ,precision medicine ,race ,receptor tyrosine kinases ,recruitment ,renal cell carcinoma ,research ,small cell lung cancer ,smoking cessation ,supportive care pathways ,surgical debulking ,surgical pathways ,team medicine ,team science ,team-based care ,team-based medicine ,testing rates ,tobacco control ,translational research ,urothelial carcinoma ,value-based cancer care ,value-based care - Abstract
Summary: Medical centers are widely recognized as vital components of the healthcare system. However, academic medical centers are differentiated from their community counterparts by their mission, which typically focuses on clinical care, education, and research. Nonetheless, community clinics/hospitals fill a critical need and play a complementary role serving as the primary sites for health care in most communities. Furthermore, it is now increasingly recognized that in addition to physicians, physician-scientists, and other healthcare-related professionals, basic research scientists also contribute significantly to the emerging inter- and cross-disciplinary, team-oriented culture of translational science. Therefore, approaches that combine the knowledge, skills, experience, expertise, and visions of clinicians in academic medical centers and their affiliated community centers and hospitals, together with basic research scientists, are critical in shaping the emerging culture of translational research so that patients from the urban as well as suburban settings can avail the benefits of the latest developments in science and medicine. 'Integrating Clinical and Translational Research Networks-Building Team Medicine' is an embodiment of this ethos at the City of Hope National Medical Center in Duarte, California. It includes a series of papers authored by teams of leading clinicians, basic research scientists, and translational researchers. The authors discuss how engaging and collaborating with community-based practices, where the majority of older patients with cancer receive their care, can ensure that these patients receive the highest-quality, evidence-based care. Based on our collective experience at City of Hope, we would like to stress that the success of academic-community collaborative programs not only depends on the goodwill and vision of the participants but also on the medical administration, academic leadership, and policymakers who define the principles and rules by which cooperation within the health care industry occurs. We trust that our experience embodied in this singular compendium will serve as a 'Rosetta Stone' for other institutions and practitioners.
38. Differential responsiveness of MET inhibition in non-small-cell lung cancer with altered CBL.
- Author
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Tan, Yi-Hung Carol, Mirzapoiazova, Tamara, Won, Brian M, Zhu, Li, Srivastava, Minu K, Vokes, Everett E, Husain, Aliya N, Batra, Surinder K, Sharma, Sherven, and Salgia, Ravi
- Subjects
Animals ,Humans ,Mice ,Carcinoma ,Non-Small-Cell Lung ,Lung Neoplasms ,Neoplasm Metastasis ,Disease Models ,Animal ,RNA ,Small Interfering ,Antineoplastic Agents ,Protein Kinase Inhibitors ,Xenograft Model Antitumor Assays ,Cell Movement ,Cell Survival ,Gene Expression ,RNA Interference ,Phosphorylation ,Drug Resistance ,Neoplasm ,Mutation ,Proto-Oncogene Proteins c-met ,Proto-Oncogene Proteins c-cbl ,Gene Knockdown Techniques ,Proteolysis ,ErbB Receptors ,Carcinoma ,Non-Small-Cell Lung ,Disease Models ,Animal ,Drug Resistance ,Neoplasm ,RNA ,Small Interfering - Abstract
Casitas B-lineage lymphoma (CBL) is an E3 ubiquitin ligase and a molecule of adaptor that we have shown is important for non-small-cell lung cancer (NSCLC). We investigated if MET is a target of CBL and if enhanced in CBL-altered NSCLC. We showed that CBL wildtype cells have lower MET expression than CBL mutant cells. Ubiquitination of MET was also decreased in CBL mutant cells compared to wildtype cells. Mutant cells were also more sensitive to MET inhibitor SU11274 than wild-type cells. sh-RNA-mediated knockdown of CBL enhanced cell motility and colony formation in NSCLC cells, and these activities were inhibited by SU11274. Assessment of the phospho-kinome showed decreased phosphorylation of pathways involving MET, paxillin, EPHA2, and VEGFR. When CBL was knocked down in the mutant cell line H1975 (erlotinib-resistant), it became sensitive to MET inhibition. Our findings suggest that CBL status is a potential positive indicator for MET-targeted therapeutics in NSCLC.
- Published
- 2017
39. Prognostic and predictive value of circulating tumor cells and CXCR4 expression as biomarkers for a CXCR4 peptide antagonist in combination with carboplatin-etoposide in small cell lung cancer: exploratory analysis of a phase II study
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Salgia, Ravi, Weaver, R Waide, McCleod, Michael, Stille, John R, Yan, S Betty, Roberson, Stephanie, Polzer, John, Flynt, Amy, Raddad, Eyas, Peek, Victoria L, Wijayawardana, Sameera R, Um, Suzane L, Gross, Steve, Connelly, Mark C, Morano, Carrie, Repollet, Madeline, Sanders, Renouard, Baeten, Kurt, D’Haese, David, and Spigel, David R
- Subjects
Biomedical and Clinical Sciences ,Oncology and Carcinogenesis ,Immunology ,Cancer ,Clinical Research ,Lung Cancer ,Lung ,4.1 Discovery and preclinical testing of markers and technologies ,4.2 Evaluation of markers and technologies ,Detection ,screening and diagnosis ,Antineoplastic Agents ,Antineoplastic Combined Chemotherapy Protocols ,Biomarkers ,Tumor ,Carboplatin ,Cell Count ,Disease-Free Survival ,Etoposide ,Humans ,Kaplan-Meier Estimate ,Lung Neoplasms ,Neoplastic Cells ,Circulating ,Peptides ,Cyclic ,Prognosis ,Receptors ,CXCR4 ,Small Cell Lung Carcinoma ,CXCR4 expression ,Carboplatin-etoposide ,Circulating tumor cells ,LY2510924 ,Small cell lung cancer ,Pharmacology and Pharmaceutical Sciences ,Oncology & Carcinogenesis ,Oncology and carcinogenesis ,Pharmacology and pharmaceutical sciences - Abstract
Background Circulating tumor cells (CTCs) and chemokine (C-X-C motif) receptor 4 (CXCR4) expression in CTCs and tumor tissue were evaluated as prognostic or predictive markers of CXCR4 peptide antagonist LY2510924 plus carboplatin-etoposide (CE) versus CE in extensive-stage disease small cell lung cancer (ED-SCLC). Methods This exploratory analysis of a phase II study evaluated CXCR4 expression in baseline tumor tissue and peripheral blood CTCs and in post-treatment CTCs. Optimum cutoff values were determined for CTC counts and CXCR4 expression in tumors and CTCs as predictors of survival outcome. Kaplan-Meier estimates and hazard ratios were used to determine biomarker prognostic and predictive values. Results There was weak positive correlation at baseline between CXCR4 expression in tumor tissue and CTCs. Optimum cutoff values were H-score ≥ 210 for CXCR4+ tumor, ≥7% CTCs with CXCR4 expression (CXCR4+ CTCs), and ≥6 CTCs/7.5 mL blood. Baseline H-score for CXCR4+ tumor was not prognostic of progression-free survival (PFS) or overall survival (OS). Baseline CXCR4+ CTCs ≥7% was prognostic of shorter PFS. CTCs ≥6 at baseline and cycle 2, day 1 were prognostic of shorter PFS and OS. None of the biomarkers at their respective optimum cutoffs was predictive of treatment response of LY2510924 plus CE versus CE. Conclusions In patients with ED-SCLC, baseline CXCR4 expression in tumor tissue was not prognostic of survival or predictive of LY2510924 treatment response. Baseline CXCR4+ CTCs ≥7% was prognostic of shorter PFS. CTC count ≥6 at baseline and after 1 cycle of treatment were prognostic of shorter PFS and OS.
- Published
- 2017
40. Essential role of the histone lysine demethylase KDM4A in the biology of malignant pleural mesothelioma (MPM)
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Lapidot, Moshe, Case, Abigail E., Weisberg, Ellen L., Meng, Chengcheng, Walker, Sarah R., Garg, Swati, Ni, Wei, Podar, Klaus, Hung, Yin P., Carrasco, Ruben D., Knott, Aine, Gokhale, Prafulla C., Sharma, Sunil, Pozhitkov, Alex, Kulkarni, Prakash, Frank, David A., Salgia, Ravi, Griffin, James D., Saladi, Srinivas V., Bueno, Raphael, and Sattler, Martin
- Published
- 2021
- Full Text
- View/download PDF
41. Post-crizotinib management of effective ceritinib therapy in a patient with ALK-positive non-small cell lung cancer
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Won, Brian, Mambetsariev, Isa, and Salgia, Ravi
- Subjects
Biomedical and Clinical Sciences ,Clinical Sciences ,Oncology and Carcinogenesis ,Cancer ,Lung ,Rare Diseases ,Lung Cancer ,Digestive Diseases ,6.1 Pharmaceuticals ,Evaluation of treatments and therapeutic interventions ,Aged ,Anaplastic Lymphoma Kinase ,Carcinoma ,Non-Small-Cell Lung ,Crizotinib ,Female ,Gene Fusion ,High-Throughput Nucleotide Sequencing ,Humans ,Lung Neoplasms ,Pyrazoles ,Pyridines ,Pyrimidines ,Receptor Protein-Tyrosine Kinases ,Sulfones ,Treatment Outcome ,eIF-2 Kinase ,ALK-positive NSCLC ,Case report ,Ceritinib ,Dose ,Gastrointestinal tolerance ,Public Health and Health Services ,Oncology & Carcinogenesis ,Oncology and carcinogenesis ,Epidemiology - Abstract
BackgroundWe report the re-biopsied diagnosis of a patient with anaplastic lymphoma receptor tyrosine kinase (ALK)-positive lung adenocarcinoma successfully treated with ceritinib 450 mg/day taken with food following disease progression and gastrointestinal intolerance to crizotinib.Case presentationA 74-year old female patient initially diagnosed with ALK-negative lung adenocarcinoma responded to initial standard chemotherapy. The patient was subsequently re-tested by next generation sequencing (NGS) and found to have ALK EIF2AK3-ALK fusion, and responded to crizotinib, but ultimately progressed and showed intolerance to this ALK inhibitor. She was then successfully treated with ceritinib 450 mg/day taken with food, has not suffered from any further gastrointestinal side-effects, and remains on ceritinib treatment after 12 months.ConclusionsSecond-line ceritinib treatment, when administered at 450 mg/day with food, is both well tolerated and efficacious in a patient with previously treated lung adenocarcinoma who had discontinued crizotinib due to disease progression and gastrointestinal adverse effects (AEs).
- Published
- 2016
42. The improbable targeted therapy: KRAS as an emerging target in non-small cell lung cancer (NSCLC)
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Salgia, Ravi, Pharaon, Rebecca, Mambetsariev, Isa, Nam, Arin, and Sattler, Martin
- Published
- 2021
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43. Phenotypic Plasticity and Cancer: A System Biology Perspective.
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Subbalakshmi, Ayalur Raghu, Ramisetty, Sravani, Mohanty, Atish, Pareek, Siddhika, Do, Dana, Shrestha, Sagun, Khan, Ajaz, Talwar, Neel, Tan, Tingting, Vishnubhotla, Priya, Singhal, Sharad S., Salgia, Ravi, and Kulkarni, Prakash
- Subjects
M cells ,EPITHELIAL-mesenchymal transition ,EPITHELIAL cell tumors ,CANCER stem cells ,PHENOTYPIC plasticity - Abstract
Epithelial-to-mesenchymal transition (EMT) is a major axis of phenotypic plasticity not only in diseased conditions such as cancer metastasis and fibrosis but also during normal development and wound healing. Yet-another important axis of plasticity with metastatic implications includes the cancer stem cell (CSCs) and non-CSC transitions. However, in both processes, epithelial (E) and mesenchymal (M) phenotypes are not merely binary states. Cancer cells acquire a spectrum of phenotypes with traits, properties, and markers of both E and M phenotypes, giving rise to intermediary hybrid (E/M) phenotypes. E/M cells play an important role in tumor initiation, metastasis, and disease progression in multiple cancers. Furthermore, the hybrid phenotypes also play a major role in causing therapeutic resistance in cancer. Here, we discuss how a systems biology perspective on the problem, which is implicit in the 'Team Medicine' approach outlined in the theme of this Special Issue of The Journal of Clinical Medicine and includes an interdisciplinary team of experts, is more likely to shed new light on EMT in cancer and help us to identify novel therapeutics and strategies to target phenotypic plasticity in cancer. [ABSTRACT FROM AUTHOR]
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- 2024
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44. Advances in Non-Small Cell Lung Cancer: Current Insights and Future Directions.
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Garg, Pankaj, Singhal, Sulabh, Kulkarni, Prakash, Horne, David, Malhotra, Jyoti, Salgia, Ravi, and Singhal, Sharad S.
- Subjects
NON-small-cell lung carcinoma ,ONCOLYTIC virotherapy ,THERAPEUTICS ,DIAGNOSIS ,NANOTECHNOLOGY - Abstract
The leading cause of cancer deaths worldwide is attributed to non-small cell lung cancer (NSCLC), necessitating a continual focus on improving the diagnosis and treatment of this disease. In this review, the latest breakthroughs and emerging trends in managing NSCLC are highlighted. Major advancements in diagnostic methods, including better imaging technologies and the utilization of molecular biomarkers, are discussed. These advancements have greatly enhanced early detection and personalized treatment plans. Significant improvements in patient outcomes have been achieved by new targeted therapies and immunotherapies, providing new hope for individuals with advanced NSCLC. This review discusses the persistent challenges in accessing advanced treatments and their associated costs despite recent progress. Promising research into new therapies, such as CAR-T cell therapy and oncolytic viruses, which could further revolutionize NSCLC treatment, is also highlighted. This review aims to inform and inspire continued efforts to improve outcomes for NSCLC patients globally, by offering a comprehensive overview of the current state of NSCLC treatment and future possibilities. [ABSTRACT FROM AUTHOR]
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- 2024
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45. Emerging Therapeutic Strategies to Overcome Drug Resistance in Cancer Cells.
- Author
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Garg, Pankaj, Malhotra, Jyoti, Kulkarni, Prakash, Horne, David, Salgia, Ravi, and Singhal, Sharad S.
- Subjects
THERAPEUTIC use of antineoplastic agents ,TUMOR genetics ,DRUG resistance in cancer cells ,GENOMICS ,T cells ,SURVIVAL rate ,IMMUNOTHERAPY ,CELLULAR therapy ,CELL lines ,IMMUNE checkpoint inhibitors ,TUMORS ,GENETIC mutation - Abstract
Simple Summary: This review explores the challenges of drug resistance in cancer treatment and discusses innovative strategies to overcome them. Researchers aim to understand how cancer cells develop resistance to therapies and explore new ways to improve treatment outcomes. They investigate advanced genomic technologies, immunotherapies like CAR-T cells, and targeted therapies that specifically attack cancer cells. By identifying these mechanisms and developing novel approaches, this research aims to enhance the effectiveness of cancer treatments and improve patient survival rates. Insights gained could lead to significant advancements in how we combat drug resistance in cancer, offering hope for better outcomes in the future. The rise of drug resistance in cancer cells presents a formidable challenge in modern oncology, necessitating the exploration of innovative therapeutic strategies. This review investigates the latest advancements in overcoming drug resistance mechanisms employed by cancer cells, focusing on emerging therapeutic modalities. The intricate molecular insights into drug resistance, including genetic mutations, efflux pumps, altered signaling pathways, and microenvironmental influences, are discussed. Furthermore, the promising avenues offered by targeted therapies, combination treatments, immunotherapies, and precision medicine approaches are highlighted. Specifically, the synergistic effects of combining traditional cytotoxic agents with molecularly targeted inhibitors to circumvent resistance pathways are examined. Additionally, the evolving landscape of immunotherapeutic interventions, including immune checkpoint inhibitors and adoptive cell therapies, is explored in terms of bolstering anti-tumor immune responses and overcoming immune evasion mechanisms. Moreover, the significance of biomarker-driven strategies for predicting and monitoring treatment responses is underscored, thereby optimizing therapeutic outcomes. For insights into the future direction of cancer treatment paradigms, the current review focused on prevailing drug resistance challenges and improving patient outcomes, through an integrative analysis of these emerging therapeutic strategies. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
46. Nanoengineering Solutions for Cancer Therapy: Bridging the Gap between Clinical Practice and Translational Research.
- Author
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Garg, Pankaj, Pareek, Siddhika, Kulkarni, Prakash, Salgia, Ravi, and Singhal, Sharad S.
- Subjects
TRANSLATIONAL research ,NANOTECHNOLOGY ,CANCER treatment ,DRUG efficacy ,EARLY detection of cancer - Abstract
Nanoengineering has emerged as a progressive method in cancer treatment, offering precise and targeted delivery of therapeutic agents while concurrently reducing overall toxicity. This scholarly article delves into the innovative strategies and advancements in nanoengineering that bridge the gap between clinical practice and research in the field of cancer treatment. Various nanoengineered platforms such as nanoparticles, liposomes, and dendrimers are scrutinized for their capacity to encapsulate drugs, augment drug efficacy, and enhance pharmacokinetics. Moreover, the article investigates research breakthroughs that drive the progression and enhancement of nanoengineered remedies, encompassing the identification of biomarkers, establishment of preclinical models, and advancement of biomaterials, all of which are imperative for translating laboratory findings into practical medical interventions. Furthermore, the integration of nanotechnology with imaging modalities, which amplify cancer detection, treatment monitoring, and response assessment, is thoroughly examined. Finally, the obstacles and prospective directions in nanoengineering, including regulatory challenges and issues related to scalability, are examined. This underscores the significance of fostering collaboration among various entities in order to efficiently translate nanoengineered interventions into enhanced cancer therapies and patient management. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
47. Activation of EPHA2-ROBO1 Heterodimer by SLIT2 Attenuates Non-canonical Signaling and Proliferation in Squamous Cell Carcinomas
- Author
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Srivastava, Saumya, Pang, Ka Ming, Iida, Mari, Nelson, Michael S., Liu, Jiayi, Nam, Arin, Wang, Jiale, Mambetsariev, Isa, Pillai, Raju, Mohanty, Atish, McDaniel, Nellie, Behal, Amita, Kulkarni, Prakash, Wheeler, Deric L., and Salgia, Ravi
- Published
- 2020
- Full Text
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48. A Non-genetic Mechanism Involving the Integrin β4/Paxillin Axis Contributes to Chemoresistance in Lung Cancer
- Author
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Mohanty, Atish, Nam, Arin, Pozhitkov, Alex, Yang, Lu, Srivastava, Saumya, Nathan, Anusha, Wu, Xiwei, Mambetsariev, Isa, Nelson, Michael, Subbalakshmi, A.R., Guo, Linlin, Arvanitis, Leonidas D., Nasser, Mohd W., Batra, Surinder K., Orban, John, Jolly, Mohit Kumar, Massarelli, Erminia, Kulkarni, Prakash, and Salgia, Ravi
- Published
- 2020
- Full Text
- View/download PDF
49. RNA-based therapies: A cog in the wheel of lung cancer defense
- Author
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Khan, Parvez, Siddiqui, Jawed Akhtar, Lakshmanan, Imayavaramban, Ganti, Apar Kishor, Salgia, Ravi, Jain, Maneesh, Batra, Surinder Kumar, and Nasser, Mohd Wasim
- Published
- 2021
- Full Text
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50. Evolution of core archetypal phenotypes in progressive high grade serous ovarian cancer
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Nath, Aritro, Cosgrove, Patrick A., Mirsafian, Hoda, Christie, Elizabeth L., Pflieger, Lance, Copeland, Benjamin, Majumdar, Sumana, Cristea, Mihaela C., Han, Ernest S., Lee, Stephen J., Wang, Edward W., Fereday, Sian, Traficante, Nadia, Salgia, Ravi, Werner, Theresa, Cohen, Adam L., Moos, Philip, Chang, Jeffrey T., Bowtell, David D. L., and Bild, Andrea H.
- Published
- 2021
- Full Text
- View/download PDF
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