25 results on '"Ross NL"'
Search Results
2. A versatile platform for generating engineered extracellular vesicles with defined therapeutic properties.
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Dooley K, McConnell RE, Xu K, Lewis ND, Haupt S, Youniss MR, Martin S, Sia CL, McCoy C, Moniz RJ, Burenkova O, Sanchez-Salazar J, Jang SC, Choi B, Harrison RA, Houde D, Burzyn D, Leng C, Kirwin K, Ross NL, Finn JD, Gaidukov L, Economides KD, Estes S, Thornton JE, Kulman JD, Sathyanarayanan S, and Williams DE
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- Animals, Cell Communication, Drug Delivery Systems, Extracellular Vesicles genetics, Extracellular Vesicles metabolism, Female, HEK293 Cells, Humans, Membrane Proteins genetics, Mice, Neoplasm Proteins genetics, Nerve Tissue Proteins genetics, Repressor Proteins genetics, Extracellular Vesicles transplantation, Membrane Proteins metabolism, Neoplasm Proteins metabolism, Nerve Tissue Proteins metabolism, Proteins administration & dosage, Repressor Proteins metabolism
- Abstract
Extracellular vesicles (EVs) are an important intercellular communication system facilitating the transfer of macromolecules between cells. Delivery of exogenous cargo tethered to the EV surface or packaged inside the lumen are key strategies for generating therapeutic EVs. We identified two "scaffold" proteins, PTGFRN and BASP1, that are preferentially sorted into EVs and enable high-density surface display and luminal loading of a wide range of molecules, including cytokines, antibody fragments, RNA binding proteins, vaccine antigens, Cas9, and members of the TNF superfamily. Molecules were loaded into EVs at high density and exhibited potent in vitro activity when fused to full-length or truncated forms of PTGFRN or BASP1. Furthermore, these engineered EVs retained pharmacodynamic activity in a variety of animal models. This engineering platform provides a simple approach to functionalize EVs with topologically diverse macromolecules and represents a significant advance toward unlocking the therapeutic potential of EVs., Competing Interests: Declaration of interests All of the authors are current or former employees and shareholders of Codiak BioSciences. D.E.W. currently serves on the Board of Directors at Ovid Pharmaceuticals, AC Immune, and Cygnal Therapeutics., (Copyright © 2021 Codiak BioSciences, Inc. Published by Elsevier Inc. All rights reserved.)
- Published
- 2021
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3. ExoSTING, an extracellular vesicle loaded with STING agonists, promotes tumor immune surveillance.
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Jang SC, Economides KD, Moniz RJ, Sia CL, Lewis N, McCoy C, Zi T, Zhang K, Harrison RA, Lim J, Dey J, Grenley M, Kirwin K, Ross NL, Bourdeau R, Villiger-Oberbek A, Estes S, Xu K, Sanchez-Salazar J, Dooley K, Dahlberg WK, Williams DE, and Sathyanarayanan S
- Subjects
- Animals, Female, Mice, Mice, Inbred BALB C, Mice, Inbred C57BL, Extracellular Vesicles physiology, Immunologic Surveillance, Tumor Microenvironment physiology
- Abstract
Cyclic dinucleotide (CDN) agonists of the STimulator of InterferoN Genes (STING) pathway have shown immune activation and tumor clearance in pre-clinical models. However, CDNs administered intratumorally also promote STING activation leading to direct cytotoxicity of many cell types in the tumor microenvironment (TME), systemic inflammation due to rapid tumor extravasation of the CDN, and immune ablation in the TME. These result in a failure to establish immunological memory. ExoSTING, an engineered extracellular vesicle (EV) exogenously loaded with CDN, enhances the potency of CDN and preferentially activates antigen presenting cells in the TME. Following intratumoral injection, exoSTING was retained within the tumor, enhanced local Th1 responses and recruitment of CD8
+ T cells, and generated systemic anti-tumor immunity to the tumor. ExoSTING at therapeutically active doses did not induce systemic inflammatory cytokines, resulting in an enhanced therapeutic window. ExoSTING is a novel, differentiated therapeutic candidate that leverages the natural biology of EVs to enhance the activity of CDNs.- Published
- 2021
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4. New Insights about CuO Nanoparticles from Inelastic Neutron Scattering.
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Spencer EC, Kolesnikov AI, Woodfield BF, and Ross NL
- Abstract
Inelastic Neutron Scattering (INS) spectroscopy has provided a unique insight into the magnetodymanics of nanoscale copper (II) oxide (CuO). We present evidence for the propagation of magnons in the directions of the ordering vectors of both the commensurate and helically modulated incommensurate antiferromagnetic phases of CuO. The temperature dependency of the magnon spin-wave intensity (in the accessible energy-range of the experiment) conforms to the Bose population of states at low temperatures ( T ≤ 100 K), as expected for bosons, then intensity significantly increases, with maximum at about 225 K (close to T
N ), and decreases at higher temperatures. The obtained results can be related to gradual softening of the dispersion curves of magnon spin-waves and decreasing the spin gap with temperature approaching TN on heating, and slow dissipation of the short-range dynamic spin correlations at higher temperatures. However, the intensity of the magnon signal was found to be particle size dependent, and increases with decreasing particle size. This "reverse size effect" is believed to be related to either creation of single-domain particles at the nanoscale, or "superferromagnetism effect" and the formation of collective particle states.- Published
- 2019
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5. Mutagenesis Screen Identifies agtpbp1 and eps15L1 as Essential for T lymphocyte Development in Zebrafish.
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Seiler C, Gebhart N, Zhang Y, Shinton SA, Li YS, Ross NL, Liu X, Li Q, Bilbee AN, Varshney GK, LaFave MC, Burgess SM, Balciuniene J, Balciunas D, Hardy RR, Kappes DJ, Wiest DL, and Rhodes J
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- Animals, Carboxypeptidases metabolism, Cell Differentiation, Gene Expression, Gene Knockdown Techniques, Hematopoiesis, Mutagenesis, Zebrafish genetics, Zebrafish Proteins metabolism, Carboxypeptidases genetics, T-Lymphocytes physiology, Zebrafish Proteins genetics
- Abstract
Genetic screens are a powerful tool to discover genes that are important in immune cell development and function. The evolutionarily conserved development of lymphoid cells paired with the genetic tractability of zebrafish make this a powerful model system for this purpose. We used a Tol2-based gene-breaking transposon to induce mutations in the zebrafish (Danio rerio, AB strain) genome, which served the dual purpose of fluorescently tagging cells and tissues that express the disrupted gene and provided a means of identifying the disrupted gene. We identified 12 lines in which hematopoietic tissues expressed green fluorescent protein (GFP) during embryonic development, as detected by microscopy. Subsequent analysis of young adult fish, using a novel approach in which single cell suspensions of whole fish were analyzed by flow cytometry, revealed that 8 of these lines also exhibited GFP expression in young adult cells. An additional 15 lines that did not have embryonic GFP+ hematopoietic tissue by microscopy, nevertheless exhibited GFP+ cells in young adults. RT-PCR analysis of purified GFP+ populations for expression of T and B cell-specific markers identified 18 lines in which T and/or B cells were fluorescently tagged at 6 weeks of age. As transposon insertion is expected to cause gene disruption, these lines can be used to assess the requirement for the disrupted genes in immune cell development. Focusing on the lines with embryonic GFP+ hematopoietic tissue, we identified three lines in which homozygous mutants exhibited impaired T cell development at 6 days of age. In two of the lines we identified the disrupted genes, agtpbp1 and eps15L1. Morpholino-mediated knockdown of these genes mimicked the T cell defects in the corresponding mutant embryos, demonstrating the previously unrecognized, essential roles of agtpbp1 and eps15L1 in T cell development.
- Published
- 2015
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6. Histone-targeted Polyplexes Avoid Endosomal Escape and Enter the Nucleus During Postmitotic Redistribution of ER Membranes.
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Ross NL, Munsell EV, Sabanayagam C, and Sullivan MO
- Abstract
Nonviral gene delivery is a promising therapeutic approach because of its safety and controllability, yet limited gene transfer efficacy is a common issue. Most nonviral strategies rely upon endosomal escape designs; however, endosomal escape is often uncorrelated with improved gene transfer and membranolytic structures are typically cytotoxic. Previously, we showed that histone-targeted polyplexes trafficked to the nucleus through an alternative route involving caveolae and the Golgi and endoplasmic reticulum (ER), using pathways similar to several pathogens. We hypothesized that the efficacy of these polyplexes was due to an increased utilization of native vesicular trafficking as well as regulation by histone effectors. Accordingly, using confocal microscopy and cellular fractionation, we determined that a key effect of histone-targeting was to route polyplexes away from clathrin-mediated recycling pathways by harnessing endomembrane transfer routes regulated by histone methyltransferases. An unprecedented finding was that polyplexes accumulated in Rab6-labeled Golgi/ER vesicles and ultimately shuttled directly into the nucleus during ER-mediated nuclear envelope reassembly. Specifically, super resolution microscopy and fluorescence correlation spectroscopy unequivocally indicated that the polyplexes remained associated with ER vesicles/membranes until mitosis, when they were redistributed into the nucleus. These novel findings highlight alternative mechanisms to subvert endolysosomal trafficking and harness the ER to enhance gene transfer.
- Published
- 2015
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7. Bonded radii and the contraction of the electron density of the oxygen atom by bonded interactions.
- Author
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Gibbs GV, Ross NL, Cox DF, Rosso KM, Iversen BB, and Spackman MA
- Abstract
The bonded radii for more than 700 bonded pairs of atoms, comprising more than 50 oxide crystals, extracted from experimental and theoretical electron density distributions, are averaged and compared with the ionic radii for first, second, and third row atoms. At odds with the assumption of a "fixed" ionic radius of 1.40 Å for the oxide anion, the bonded radius for the anion, r(b)(O), decreases systematically from 1.40 to 0.65 Å as the electron density distribution of the atom is progressively polarized and contracted by its bonded interactions. The radii for the more electropositive metal atoms agree with the ionic radii when the electron density distribution of the anion is largely unpolarized by its bonded interactions. However, those for the more electronegative metal atoms are progressively larger than the ionic radii as the electron density distribution of the anion is progressively polarized and contracted along the bond vectors with decreasing bond length. The progressive decrease of r(b)(O) indicates that the compilation of sets of ionic radii, based on a fixed radius for the oxide anion, is problematic and impacts the accuracy of the ionic radii for the metal atoms. The assumption of a "fixed" radius for the anion, made in the derivation of sets of radii, not only results in unrealistic negative ionic radii for the more electronegative atoms but also in ionic radii that are as much as 0.5 Å smaller than the bonded radii, particularly for the more electronegative M atoms. The lack of agreement between the ionic and the bonded radii for the more shared bonded interactions is ascribed to the progressive increase in the polarization and contraction of the electron density of the oxide anion by the bonded interactions with a concomitant decrease in the radius of the anion, a factor that was largely neglected in the compilation of the ionic radii for fluoride, oxide, sulfide, and nitride crystals. The close agreement of the bonded radii and procrystal bonded radii is consistent with the argument that the chemical forces that govern the electron density distributions and bonded radii are largely atomic in nature, resulting in comparable electron density distributions.
- Published
- 2013
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8. Insulin-like growth factor-1 promotes wound healing in estrogen-deprived mice: new insights into cutaneous IGF-1R/ERα cross talk.
- Author
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Emmerson E, Campbell L, Davies FC, Ross NL, Ashcroft GS, Krust A, Chambon P, and Hardman MJ
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- Animals, Cells, Cultured, Dermatitis drug therapy, Dermis cytology, Dermis immunology, Disease Models, Animal, Estrogen Receptor alpha genetics, Estrogens deficiency, Female, Fibroblasts cytology, Fibroblasts metabolism, Humans, Insulin-Like Growth Factor I pharmacology, Keratinocytes cytology, Keratinocytes metabolism, Macrophages, Peritoneal cytology, Macrophages, Peritoneal metabolism, Mice, Mice, Inbred C57BL, Mice, Mutant Strains, Ovariectomy, Receptor Cross-Talk drug effects, Receptor Cross-Talk physiology, Signal Transduction drug effects, Wound Healing drug effects, Dermatitis metabolism, Estrogen Receptor alpha metabolism, Insulin-Like Growth Factor I metabolism, Receptor, IGF Type 1 metabolism, Signal Transduction immunology, Wound Healing immunology
- Abstract
Although it is understood that endogenous IGF-1 is involved in the wound repair process, the effects of exogenous IGF-1 administration on wound repair remain largely unclear. In addition, the signaling links between IGF-1 receptor (IGF-1R) and estrogen receptors (ERs), which have been elucidated in other systems, have yet to be explored in the context of skin repair. In this study, we show that locally administered IGF-1 promotes wound repair in an estrogen-deprived animal model, the ovariectomized (Ovx) mouse, principally by dampening the local inflammatory response and promoting re-epithelialization. Using specific IGF-1R and ER antagonists in vivo, we reveal that IGF-1-mediated effects on re-epithelialization are directly mediated by IGF-1R. By contrast, the anti-inflammatory effects of IGF-1 are predominantly via the ERs, in particular ERα. Crucially, in ERα-null mice, IGF-1 fails to promote healing, and local inflammation is increased. Our findings illustrate the complex interactions between IGF-1 and estrogen in skin. The fact that IGF-1 may compensate for estrogen deficiency in wound repair, and potentially other contexts, is an important consideration for the treatment of postmenopausal pathology.
- Published
- 2012
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9. Bond paths and van der Waals interactions in orpiment, As2S3.
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Gibbs GV, Wallace AF, Zallen R, Downs RT, Ross NL, Cox DF, and Rosso KM
- Abstract
The calculated electron density distribution for orpiment, As(2)S(3), reveals that As-S, S-S, and As-As bond paths are associated with the experimental interlayer directed bonded interactions detected in a combined infrared and Raman study. The successful modeling of the infrared- and Raman-determined interlayer bonded interactions together with bond paths and the structuralization of a variety of inorganic molecules in terms of "key-lock" bond path mainstays support the argument that van der Waals forces in inorganic molecular crystals are directional.
- Published
- 2010
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10. Inelastic neutron scattering study of confined surface water on rutile nanoparticles.
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Spencer EC, Levchenko AA, Ross NL, Kolesnikov AI, Boerio-Goates J, Woodfield BF, Navrotsky A, and Li G
- Subjects
- Temperature, Thermodynamics, Vibration, Nanoparticles chemistry, Neutrons, Scattering, Radiation, Titanium chemistry, Water chemistry
- Abstract
The vibrational density of states (VDOS) for water confined on the surface of rutile-TiO(2) nanoparticles has been extracted from low temperature inelastic neutron scattering spectra. Two rutile-TiO(2) nanoparticle samples that differ in their respective levels of hydration, namely TiO(2) x 0.37 H(2)O (1) and TiO(2) x 0.22 H(2)O (2) have been studied. The temperature dependency of the heat capacities for the two samples has been quantified from the VDOS. The results from this study are compared with previously reported data for water confined on anatase-TiO(2) nanoparticles.
- Published
- 2009
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11. Role of directed van der Waals bonded interactions in the determination of the structures of molecular arsenate solids.
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Gibbs GV, Wallace AF, Cox DF, Dove PM, Downs RT, Ross NL, and Rosso KM
- Abstract
Bond paths, local energy density properties, and Laplacian, L(r) = -wedge(2)rho(r), composite isosurfaces of the electron density distributions were calculated for the intramolecular and intermolecular bonded interactions for molecular solids of As(2)O(3) and AsO(2) composition, an As(2)O(5) crystal, a number of arsenate molecules, and the arsenic metalloid, arsenolamprite. The directed intermolecular van der Waals As-O, O-O, and As-As bonded interactions are believed to serve as mainstays between the individual molecules in each of the molecular solids. As-O bond paths between the bonded atoms connect Lewis base charge concentrations and Lewis acid charge depletion domains, whereas the O-O and As-As paths connect Lewis base pair and Lewis acid pair domains, respectively, giving rise to sets of intermolecular directed bond paths. The alignment of the directed bond paths results in the periodic structures adopted by the arsenates. The arrangements of the As atoms in the claudetite polymorphs of As(2)O(3) and the As atoms in arsenolamprite are similar. Like the As(2)O(3) polymorphs, arsenolamprite is a molecular solid connected by relatively weak As-As intermolecular directed van der Waals bond paths between the layers of stronger As-As intramolecular bonded interactions. The bond critical point and local energy density properties of the intermolecular As-As bonded interactions in arsenolamprite are comparable with the As-As interactions in claudetite I. As such, the structure of claudetite I can be viewed as a stuffed derivative of the arsenolamprite structure with O atoms between pairs of As atoms comprising the layers of the structure. The cubic structure adopted by the arsenolite polymorph can be understood in terms of sets of directed acid-base As-O and base-base O-O pair domains and bond paths that radiate from the tetrahedral faces of its constituent molecules, serving as face-to-face key-lock mainstays in forming a periodic tetrahedral array of molecules rather than one based on some variant of close packing. The relatively dense structure and the corrugation of the layers in claudetite I can also be understood in terms of directed van der Waals As-O bonded interactions. Our study not only provides a new basis for understanding the crystal chemistry and the structures of the arsenates, but it also calls for a reappraisal of the concept of van der Waals bonded interactions, how the structures of molecular solids are viewed, and how the molecules in these solids are bonded in a periodic structure.
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- 2009
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12. Experimental bond critical point and local energy density properties determined for Mn-O, Fe-O, and Co-O bonded interactions for tephroite, Mn2SiO4, fayalite, Fe2SiO4, and Co2SiO4 olivine and selected organic metal complexes: comparison with properties calculated for non-transition and transition metal M-O bonded interactions for silicates and oxides.
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Gibbs GV, Downs RT, Cox DF, Rosso KM, Ross NL, Kirfel A, Lippmann T, Morgenroth W, and Crawford TD
- Abstract
Bond critical point (bcp) and local energy density properties for the electron density (ED) distributions, calculated with first-principle quantum mechanical methods for divalent transition metal Mn-, Co-, and Fe-containing silicates and oxides are compared with experimental model ED properties for tephroite, Mn 2SiO 4, fayalite, Fe 2SiO 4, and Co 2SiO 4 olivine, each determined with high-energy synchrotron single-crystal X-ray diffraction data. Trends between the experimental bond lengths, R(M-O), (M = Mn, Fe, Co), and the calculated bcp properties are comparable with those observed for non-transition M-O bonded interactions. The bcp properties, local total energy density, H( r c), and bond length trends determined for the Mn-O, Co-O, and Fe-O interactions are also comparable. A comparison is also made with model experimental bcp properties determined for several Mn-O, Fe-O, and Co-O bonded interactions for selected organometallic complexes and several oxides. Despite the complexities of the structures of the organometallic complexes, the agreement between the calculated and model experimental bcp properties is fair to good in several cases. The G( r c)/rho( r c) versus R(M-O) trends established for non-transition metal M-O bonded interactions hold for the transition metal M-O bonded interactions with G( r c)/rho( r c) increasing in value as H( r c) becomes progressively more negative in value, indicating an increasing shared character of the interaction as G( r c)/rho( r c) increases in value. As observed for the non-transition metal M-O bonded interactions, the Laplacian, nabla (2)rho( r c), increases in value as rho( r c) increases and as H( r c) decreases and becomes progressive more negative in value. The Mn-O, Fe-O, and Co-O bonded interactions are indicated to be of intermediate character with a substantial component of closed-shell character compared with Fe-S and Ni-S bonded interactions, which show greater shared character based on the | V( r c)|/ G( r c) bond character indicator. The atomic charges conferred on the transition metal atoms for the three olivines decrease with increasing atomic number from Mn to Fe to Co as the average M-O bond lengths decrease from 2.219 to 2.168 to 2.128 A, respectively.
- Published
- 2008
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13. Shared and closed-shell O-O interactions in silicates.
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Gibbs GV, Downs RT, Cox DF, Ross NL, Boisen MB Jr, and Rosso KM
- Abstract
Bond paths of maximum electron density spanning O-O edges shared between equivalent or quasiequivalent MOn (n > 4) coordination polyhedra are not uncommon electron density features displayed by silicates. On the basis of the positive values for the local electronic energy density, H(rc), at the bond critical points, rc, they qualify as weak "closed-shell" interactions. As observed for M-O bonded interactions (M = first and second row metal atoms), the electron density, rho(rc), and the Laplacian of the electron density increase in a regular way as the separation between the O atoms, R(O-O), decreases. A simple model, based on R(O-O) and the distances of the Si atoms from the midpoint between adjacent pairs of O atoms, partitions the O-O bond paths in the high-pressure silica polymorph coesite into two largely disjoint domains, one with and one without bond paths. The occurrence of O-O bond paths shared in common between equivalent coordination polyhedra suggests that they may be grounded in some cases on factors other than bonded interactions, particularly since they are often displayed by inert procrystal representations of the electron density. In these cases, it can be argued that the accumulation of the electron density along the paths has its origin, at least in part, in the superposition of the peripheral electron density distributions of the metal M atoms occupying the edge-sharing polyhedra. On the other hand, the accumulation of electron density along the paths may stabilize a structure by shielding the adjacent M atoms in the edge-sharing polyhedra. For closed-shell Li-O, Na-O, and Mg-O interactions, H(rc) is positive and increases as the value of rho(rc) increases, unlike the "shared" Be-O, B-O, C-O, Al-O, Si-O, P-O, and S-O interactions, where H(rc) is negative and decreases as rho(rc) increases. The H(rc) values for the weak closed-shell O-O interactions also increase as rho(rc) increases, as observed for the closed-shell M-O interactions. On the basis of the bond critical point properties and the negative H(rc) value, the O-O interaction comprising the O2 molecule in silica III qualifies as a shared interaction.
- Published
- 2008
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14. Dynamics of water confined on a TiO2 (anatase) surface.
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Levchenko AA, Kolesnikov AI, Ross NL, Boerio-Goates J, Woodfield BF, Li G, and Navrotsky A
- Abstract
Inelastic neutron scattering has been employed to probe the vibrational density of states of water confined by an oxide surface, namely, nanoparticles of the anatase polymorph of TiO2. The heat capacity of confined water has been measured by adiabatic calorimetry and compared with values derived from the vibrational density of states. Both inelastic neutron scattering and calorimetry demonstrate restricted mobility and lower heat capacity and entropy of confined water as compared to the bulk.
- Published
- 2007
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15. Theoretical electron density distributions for Fe- and Cu-sulfide earth materials: a connection between bond length, bond critical point properties, local energy densities, and bonded interactions.
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Gibbs GV, Cox DF, Rosso KM, Ross NL, Downs RT, and Spackman MA
- Abstract
Bond critical point and local energy density properties together with net atomic charges were calculated for theoretical electron density distributions, rho(r), generated for a variety of Fe and Cu metal-sulfide materials with high- and low-spin Fe atoms in octahedral coordination and high-spin Fe atoms in tetrahedral coordination. The electron density, rho(rc), the Laplacian, triangle down2rho(rc), the local kinetic energy, G(rc), and the oxidation state of Fe increase as the local potential energy density, V(rc), the Fe-S bond lengths, and the coordination numbers of the Fe atoms decrease. The properties of the bonded interactions for the octahedrally coordinated low-spin Fe atoms for pyrite and marcasite are distinct from those for high-spin Fe atoms for troilite, smythite, and greigite. The Fe-S bond lengths are shorter and the values of rho(rc) and triangle down2rho(rc) are larger for pyrite and marcasite, indicating that the accumulation and local concentration of rho(r) in the internuclear region are greater than those involving the longer, high-spin Fe-S bonded interactions. The net atomic charges and the bonded radii calculated for the Fe and S atoms in pyrite and marcasite are also smaller than those for sulfides with high-spin octahedrally coordinated Fe atoms. Collectively, the Fe-S interactions are indicated to be intermediate in character with the low-spin Fe-S interactions having greater shared character than the high-spin interactions. The bond lengths observed for chalcopyrite together with the calculated bond critical point properties are consistent with the formula Cu+Fe3+S2. The bond length is shorter and the rho(rc) value is larger for the FeS4 tetrahedron displayed by metastable greigite than those displayed by chalcopyrite and cubanite, consistent with a proposal that the Fe atom in greigite is tetravalent. S-S bond paths exist between each of the surface S atoms of adjacent slabs of FeS6 octahedra comprising the layer sulfide smythite, suggesting that the neutral Fe3S4 slabs are linked together and stabilized by the pathways of electron density comprising S-S bonded interactions. Such interactions not only exist between the S atoms for adjacent S8 rings in native sulfur, but their bond critical point properties are similar to those displayed by the metal sulfides.
- Published
- 2007
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16. Electron density distributions calculated for the nickel sulfides millerite, vaesite, and heazlewoodite and nickel metal: a case for the importance of ni-ni bond paths for electron transport.
- Author
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Gibbs GV, Downs RT, Prewitt CT, Rosso KM, Ross NL, and Cox DF
- Abstract
Bond paths and the bond critical point properties (the electron density (rho) and the Hessian of rho at the bond critical points (bcp's)) have been calculated for the bonded interactions comprising the nickel sulfide minerals millerite, NiS, vaesite, NiS(2), and heazlewoodite, Ni(3)S(2), and Ni metal. The experimental Ni-S bond lengths decrease linearly as the magnitudes of the properties each increases in value. Bond paths exist between the Ni atoms in heazlewoodite and millerite for the Ni-Ni separations that match the shortest separation in Ni metal, an indicator that the Ni atoms are bonded. The bcp properties of the bonded interactions in Ni metal are virtually the same as those in heazlewoodite and millerite. Ni-Ni bond paths are absent in vaesite where the Ni-Ni separations are 60% greater than those in Ni metal. The bcp properties for the Ni-Ni bonded interactions scatter along protractions of the Ni-S bond length-bcp property trends, suggesting that the two bonded interactions have similar characteristics. Ni-Ni bond paths radiate throughout Ni metal and the metallic heazlewoodite structures as continuous networks whereas the Ni-Ni paths in millerite, a p,d-metal displaying ionic and covalent features, are restricted to isolated Ni(3) rings. Electron transport in Ni metal and heazlewoodite is pictured as occurring along the bond paths, which behave as networks of atomic size wires that radiate in a contiguous circuit throughout the two structures. Unlike heazlewoodite, the electron transport in millerite is pictured as involving a cooperative hopping of the d-orbital electrons from the Ni(3) rings comprising Ni(3)S(9) clusters to Ni(3) rings in adjacent clusters via the p-orbitals on the interconnecting S atoms. Vaesite, an insulator at low temperatures and a doped semiconductor at higher temperatures, lacks Ni-Ni bond paths. The net charges conferred on the Ni and S atoms are about a quarter of their nominal charges for the atoms in millerite and vaesite with the net charge on Ni increasing with increasing Ni-S bond length. Reduced net charges are observed on the Ni atoms in heazlewoodite and are related to its Ni-Ni metal bonded interactions and to the greater covalent character of its bonds. Local energy density and bond critical point properties of the electron density distributions indicate that the Ni-S and Ni-Ni bonded interactions are intermediate in character between ionic and covalent.
- Published
- 2005
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17. Comparison of the electron localization function and deformation electron density maps for selected earth materials.
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Gibbs GV, Cox DF, Ross NL, Crawford TD, Downs RT, and Burt JB
- Abstract
The electron localization function (ELF) and experimental and theoretical deformation electron density maps are compared for several earth materials and one representative molecule. The number and arrangement of the localized one-electron probability density domains generated in a mapping of the ELF correspond to the number and arrangement of the localized electron density domains generated in a mapping of the deformation electron density distribution, a correspondence that suggests that the two fields are homeomorphically related. As a homeomorphic relationship has been established previously between the Laplacian of the electron density distribution and the ELF, the relationship suggests that the deformation electron density distribution is also homeomorphically related to the Laplacian of the distribution.
- Published
- 2005
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18. Triplication of several PAR1 genes and part of the Homo sapiens specific Yp11.2/Xq21.3 region of homology in a 46,X,t(X;Y)(p22.33;p11.2) male with schizophrenia.
- Author
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Ross NL, Yang J, Sargent CA, Boucher CA, Nanko S, Wadekar R, Williams NA, Affara NA, and Crow TJ
- Subjects
- Asian People genetics, Base Sequence, Cell Line, Transformed, Chromosome Breakage genetics, Cloning, Molecular, Gene Amplification genetics, Humans, In Situ Hybridization, Fluorescence, Japan, Male, Microsatellite Repeats genetics, Molecular Sequence Data, Polymerase Chain Reaction, Radiation Hybrid Mapping, Restriction Mapping, Schizophrenia complications, Sequence Tagged Sites, Sex Chromosome Disorders complications, Genes, Duplicate genetics, Schizophrenia genetics, Sequence Homology, Nucleic Acid, Sex Chromosome Disorders genetics, Translocation, Genetic genetics, X Chromosome genetics, Y Chromosome genetics
- Published
- 2001
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19. Enhancement of cation diffusion rates across the 410-kilometer discontinuity in Earth's mantle
- Author
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Chakraborty S, Knoche R, Schulze H, Rubie DC, Dobson D, Ross NL, and Angel RJ
- Abstract
Rates of cation diffusion (magnesium, iron, and nickel) have been determined in olivine and its high-pressure polymorph, wadsleyite, at 9 to 15 gigapascals and 1100 degrees to 1400 degreesC for compositions that are relevant to Earth's mantle. Diffusion in olivine becomes strongly dependent on composition at high pressure. In wadsleyite, diffusion is one to two orders of magnitude faster than in olivine, depending on temperature. Homogenization of mantle heterogeneities (chemical mixing) and mineral transformations involving a magnesium-iron exchange will therefore occur considerably faster in the transition zone than at depths of less than 410 kilometers.
- Published
- 1999
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20. Structure and properties of a herpesvirus of turkeys recombinant in which US1, US10 and SORF3 genes have been replaced by a lacZ expression cassette.
- Author
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Zelník V, Tyers P, Smith GD, Liang C, and Ross NL
- Subjects
- Animals, Antibodies, Viral biosynthesis, Base Sequence, Cells, Cultured, Chick Embryo, Chickens, Cloning, Molecular, DNA Primers, Gene Expression Regulation, Viral, Herpesviridae physiology, Molecular Sequence Data, Mutagenesis, Insertional, Plasmids, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins immunology, Recombinant Fusion Proteins metabolism, Turkeys virology, Virus Replication, Genes, Viral, Herpesviridae genetics, Lac Operon
- Abstract
In the process of generating an insertional mutant of herpesvirus of turkeys (HVT) expressing lacZ at the protein kinase (PK) locus, we isolated a recombinant which contained an intact PK gene but the short unique regions US1, US10 and SORF3 had been deleted and replaced by the lacZ cassette. Moreover, the virus contained duplicate copies of gD, gI and gE in an opposite orientation flanking lacZ, US2 and PK which were contiguous. These results are of interest in relation to the flexibility of the short unique segment (Us) and of the inverted repeats flanking Us of the alpha-herpesviruses. The recombinant expressed beta-galactosidase and was genetically stable in vitro and in vivo. Chickens inoculated with the virus developed antibodies to HVT antigens and to beta-galactosidase but the replication of the recombinant in vivo was impaired in comparison to parental HVT as shown by a reduction in the proportion of infected lymphocytes.
- Published
- 1995
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21. Characterization of proteins encoded by the short unique region of herpesvirus of turkeys by in vitro expression.
- Author
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Zelník V, Ross NL, and Pastorek J
- Subjects
- Animals, Base Sequence, Cloning, Molecular, Gammaherpesvirinae metabolism, Herpesvirus 2, Gallid genetics, Protein Biosynthesis, Protein Kinases metabolism, Protein Processing, Post-Translational, RNA, Viral biosynthesis, Transcription, Genetic, Viral Proteins biosynthesis, Viral Proteins isolation & purification, Gammaherpesvirinae genetics, Genome, Viral, Open Reading Frames, Turkeys virology
- Abstract
Nine open reading frames mapping in the short unique (US) region of the genome of herpesvirus of turkeys (HVT) were expressed by in vitro transcription and translation. The observed M(r)s of US10, SORF3 and US2 were as predicted from the sequence but there were discrepancies between the observed and predicted M(r)s of US1, protein kinase, gI, gD and gE. These could be accounted for in most cases by post-translational and co-translational processing. Analysis of the synthesized products at different time points provided evidence for post-translational modification of HVT protein kinase. Translation in the presence of microsomal membranes resulted in co-translational processing of HVT gD, gI and gE by glycosylation and signal peptide cleavage.
- Published
- 1994
- Full Text
- View/download PDF
22. Identification and sequence analysis of the homologues of the herpes simplex virus type 1 glycoprotein H in Marek's disease virus and the herpesvirus of turkeys.
- Author
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Scott SD, Smith GD, Ross NL, and Binns MM
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Molecular Sequence Data, Sequence Analysis, Sequence Homology, Amino Acid, Sequence Homology, Nucleic Acid, Genes, Viral genetics, Herpesviridae genetics, Herpesvirus 2, Gallid genetics, Turkeys microbiology, Viral Envelope Proteins genetics
- Abstract
The glycoprotein H (gH) genes of two avian herpesviruses, Marek's disease virus and the herpesvirus of turkeys, have been cloned and sequenced and the coding regions found to be of 2439 and 2424 nucleotides respectively. The predicted primary polypeptide products of these open reading frames are 813 and 808 amino acids and correspond to Mrs of 90,800 and 91,100. Both amino acid sequences exhibit characteristic glycoprotein features such as hydrophobic signal and anchor sequences and potential sites for N-linked glycosylation. Polypeptide sequence comparison to the other eight available gH sequences revealed more similarity to the alphaherpesvirus subgroup than to either beta- or gammaherpesviruses.
- Published
- 1993
- Full Text
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23. Nucleotide and predicted amino acid sequences of the Marek's disease virus and turkey herpesvirus thymidine kinase genes; comparison with thymidine kinase genes of other herpesviruses.
- Author
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Scott SD, Ross NL, and Binns MM
- Subjects
- Amino Acid Sequence, Base Sequence, DNA, Viral genetics, Herpesviridae enzymology, Herpesvirus 2, Gallid enzymology, Molecular Sequence Data, Genes, Viral, Herpesviridae genetics, Herpesvirus 2, Gallid genetics, Thymidine Kinase genetics, Viral Structural Proteins genetics
- Abstract
In this paper we present the nucleotide sequences of the thymidine kinase (TK) genes of two avian herpesviruses: a highly oncogenic strain of Marek's disease virus (MDV strain RB1B) and its serologically related vaccine virus, the herpesvirus of turkeys (HVT strain Fc-126). The predicted coding regions of the two genes are 1029 and 1050 nucleotides respectively, corresponding to polypeptides of 343 and 350 amino acids in length. Putative nucleotide- and nucleoside-binding sites have been identified within the two predicted amino acid sequences. The MDV and HVT TK amino acid sequences exhibit 58.2% amino acid identity. Comparison with other available herpesvirus TK sequences reveals a greater homology to those of the alphaherpesviruses than to those of the gammaherpesviruses. No overall homology was found when compared with the chicken cytoplasmic TK sequence.
- Published
- 1989
- Full Text
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24. Persistence and expression of Marek's disease virus DNA in tumour cells and peripheral nerves studied by in situ hybridization.
- Author
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Ross NL, DeLorbe W, Varmus HE, Bishop JM, Brahic M, and Haase A
- Subjects
- Animals, Cell Line, Cell Nucleus analysis, Chick Embryo, Cloning, Molecular, Cytoplasm analysis, Fibroblasts, Lymphocytes, Nucleic Acid Hybridization, RNA, Viral analysis, Chickens microbiology, DNA, Viral analysis, Herpesvirus 2, Gallid analysis, Marek Disease microbiology, Peripheral Nerves microbiology
- Abstract
We have used cloned fragments of Marek's disease virus (MDV) DNA and in situ hybridization to search for virus DNA and study its expression in infected chick embryo fibroblasts (CEF), lymphoblastoid cell lines, tumours and neural lesions. DNA from the HPRS 16/att strain of MDV was cleaved with EcoRI endonuclease and several fragments were cloned in Escherichia coli using the vector PBR322. Seven fragments ranging in size from 2.6 to 11 kbp representing approx. 25% of the MDV genome were labelled in vitro and annealed to EcoRI digests of DNA from infected cells and tumours following separation and transfer according to the Southern blotting procedure. Most of the selected MDV DNA fragments hybridized to fragments of corresponding sizes in EcoRI digests of DNA from cell lines and tumours and failed to hybridize to digests of uninfected chick cell DNA. In situ hydridization using 3H-labelled DNA with specific activity of 10(8) d/min/microgram as probe showed intranuclear MDV DNA in infected CEF, in every cell of two lymphoblastoid cell lines and in the majority of infiltrating or proliferating lymphoid cells found in type 'A' lesions of grossly enlarged peripheral nerves. Both intranuclear and cytoplasmic RNA were detected in cells that contained virus DNA. However, comparatively little virus RNA appears to be transcribed in cell lines and in infected tissues from the regions of virus DNA (25% of genome) used as probe in this study. Our results favour the hypothesis that the accumulation of lymphoid cells in nerves is not the result of an inflammatory response to infected nerve cells but is rather the consequence of proliferating transformed cells.
- Published
- 1981
- Full Text
- View/download PDF
25. Gene sequence and mapping data from Marek's disease virus and herpesvirus of turkeys: implications for herpesvirus classification.
- Author
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Buckmaster AE, Scott SD, Sanderson MJ, Boursnell ME, Ross NL, and Binns MM
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Cloning, Molecular, DNA Restriction Enzymes, Deoxyribonuclease BamHI, Herpesviridae classification, Herpesvirus 2, Gallid classification, Molecular Sequence Data, Nucleic Acid Hybridization, Sequence Homology, Nucleic Acid, Software, Turkeys, DNA, Viral genetics, Herpesviridae genetics, Herpesvirus 2, Gallid genetics
- Abstract
Purified DNAs from Marek's disease virus (MDV) and the herpesvirus of turkeys (HVT) were randomly sheared and cloned into the M13 bacteriophage. Two-hundred and ten MDV and 130 HVT clones were sequenced to give representative samples of the genome sequences. The predicted amino acid sequences from these gammaherpes-viruses were compared to known sequences from other herpesviruses using computer analysis. Thirty-five MDV and 24 HVT genes were identified by comparison with varicella-zoster virus (VZV), an alphaherpesvirus. However, only 14 MDV and seven HVT genes, giving generally lower homology scores, were found by comparison with Epstein-Barr virus (EBV), a gammaherpesvirus, indicating that MDV and HVT sequences bear greater similarity to VZV than to EBV sequences. A number of sequences were mapped by hybridizing labelled M13 clones to Southern blots of restriction fragments of MDV or HVT DNA. The results were consistent with the MDV and HVT genomes being collinear with VZV.
- Published
- 1988
- Full Text
- View/download PDF
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