214 results on '"Pomponi, Shirley A."'
Search Results
2. Sponsored Projects : The NOAA Office of Ocean Exploration and Research
- Author
-
Valette-Silver, Nathalie, Hammond, Stephen R., Cantelas, Frank, Beaverson, Chris, Copeland, Adrienne, Egan, Katharine, Netburn, Amanda N., Bohan, Margot, Jefferson, Yvette, Woodford, Joyce, Voss, Joshua, Pomponi, Shirley, Iken, Katrin, Smith, John R., Watling, Les, Summers, Natalie, Roark, E. Brendan, Morgan, Nicole, Lensing, Becca, France, Scott C., Dulai, Henrietta, Carter, Glenn S., Bingo, Sarah, Baco-Taylor, Amy, German, Christopher R., Johnsen, Sönke, Hall, Emily R., Culter, Jim, Beckler, Jordon, Talliefert, Martial, Stewart, Frank, Smith, Chris, Hamdan, Leila, Evans, Amanda, Kaiser, Carl L., Lindzey, Laura, Jakuba, Michael V., Partan, James W., and Dolan, Christopher
- Published
- 2020
3. Short macrocyclic peptides in sponge genomes
- Author
-
Lin, Zhenjian, primary, Agarwal, Vinayak, additional, Cong, Ying, additional, Pomponi, Shirley A., additional, and Schmidt, Eric W., additional
- Published
- 2024
- Full Text
- View/download PDF
4. Sponsored Projects : NOAA’s Office of Ocean Exploration and Research
- Author
-
Valette-Silver, Nathalie, Cantelas, Frank, Beaverson, Chris, Netburn, Amanda N., Murphy, James, Elliott, Kelley, Hammond, Stephen R., Jefferson, Yvette, Woodford, Joyce, Voss, Joshua, Pomponi, Shirley, Drazen, Jeffrey C., Church, Matthew, Dahlgren, Thomas, Durden, Jennifer, Glover, Adrian, Goetze, Erica, Leitner, Astrid, Smith, Craig R., Sweetman, Andrew, Pietruszka, Andrew T., Terrill, Eric J., Moline, Mark A., Lusardi, Wayne R., Carrell, Toni L., Hoyt, Joseph C., Bartlett, Doug, Plominsky, Alvaro Muñoz, Schmidt, Wilford, Rojas, Danilo, Smith, Ryan, Jimenez, Manuel, Roman, Christopher, Warren, Joe, Cordes, Erik, Seibel, Brad, Macelloni, Leonardo, Zhang, Likun, Rad, Parsa, and Zou, Zheguang
- Published
- 2019
5. Sponsored Projects : NOAA’s Office of Ocean Exploration and Research
- Author
-
Valette-Silver, Nathalie, Cantelas, Frank, Beaverson, Chris, Netburn, Amanda, Jefferson, Yvette, Woodford, Joyce, Hammond, Stephen, Pomponi, Shirley, Reed, John, Voss, Joshua, Hanisak, Dennis, Diaz, M. Cristina, David, Andrew, Drummond, Felicia, González-Díaz, Patricia, López, Linnet Busutil, Martínez-Daranas, Beatriz, Rojas, Dorka Cobián, Bright, John, Green, Russell, Keogh, Kelly, Ho, Bert, Embley, Robert, Merle, Susan, Raineault, Nicole A., Gee, Lindsay, Ruppel, Carolyn, Demopoulos, Amanda W.J., Prouty, Nancy, Canonico, Gabrielle, Bohan, Margot, Nizinski, Martha, Adams, Caitlin, McNeil, Craig, D’Asaro, Eric, Reed, Andrew, Altabet, Mark A., and Bourbonnais, Annie
- Published
- 2018
6. CAPSTONE : Exploring the US Marine Protected Areas in the Central and Western Pacific
- Author
-
NOAA Ship Okeanos Explorer EX1605 Expedition Team, Brooke, Samantha, Kelley, Christopher, Kosaki, Randall K., Parke, Michael, Parrish, Frank, Bowman, Amy, Potter, Jeremy, Wagner, Daniel, Tree, Jonathan, Kennedy, Brian R.C., Cantwell, Kasey, Amon, Diva J., Fryer, Patricia, Glickson, Deborah, Pomponi, Shirley A., Lobecker, Elizabeth, Elliott, Kelley, Sowers, Derek, Ford, Mike, Netburn, Amanda, Konter, Jasper, Cantelas, Frank, VanTilburg, Hans, Fabian, Gary, Kinney, Jeremy R., and Tully, Anthony
- Published
- 2017
7. Short macrocyclic peptides in sponge genomes.
- Author
-
Zhenjian Lin, Agarwal, Vinayak, Ying Cong, Pomponi, Shirley A., and Schmidt, Eric W.
- Subjects
CYCLIC peptides ,PEPTIDES ,SIGNAL peptides ,AMINO acid sequence ,POST-translational modification - Abstract
Sponges (Porifera) contain many peptide-specialized metabolites with potent biological activities and significant roles in shaping marine ecology. It is well established that symbiotic bacteria produce bioactive "sponge" peptides, both on the ribosome (RiPPs) and nonribosomally. Here, we demonstrate that sponges themselves also produce many bioactive macrocyclic peptides, such as phakellistatins and related proline-rich macrocyclic peptides (PRMPs). Using the Stylissa carteri sponge transcriptome, methods were developed to find sequences encoding 46 distinct RiPP-type core peptides, of which ten encoded previously identified PRMP sequences. With this basis set, the genome and transcriptome of the sponge Axinella corrugata was interrogated to find 35 PRMP precursor peptides encoding 31 unique core peptide sequences. At least 11 of these produced cyclic peptides that were present in the sponge and could be characterized by mass spectrometry, including stylissamides A-D and seven previously undescribed compounds. Precursor peptides were encoded in the A. corrugata genome, confirm-ing their animal origin. The peptides contained signal peptide sequences and highly repetitive recognition sequence-core peptide elements with up to 25 PRMP copies in a single precursor. In comparison to sponges without PRMPs, PRMP sponges are incredibly enriched in potentially secreted polypeptides, with >23,000 individual signal peptide encoding genes found in a single transcriptome. The similarities between PRMP biosynthetic genes and neuropeptides in terms of their biosynthetic logic suggest a fundamental biology linked to circular peptides, possibly indicating a widespread and underappreciated diversity of signaling peptide post-translational modifications across the animal kingdom. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
8. Quantitative Assessment of Marine Sponge Cells in vitro: Development of Improved Growth Medium
- Author
-
Pomponi, Shirley A.
- Published
- 2000
9. An annotated and illustrated identification guide to common mesophotic reef sponges (Porifera, Demospongiae, Hexactinellida, and Homoscleromorpha) inhabiting Flower Garden Banks National Marine Sanctuary and vicinities
- Author
-
Díaz, Maria Cristina, primary, Nuttall, Marissa, additional, Pomponi, Shirley A., additional, Rützler, Klaus, additional, Klontz, Sarah, additional, Adams, Christi, additional, Hickerson, Emma L., additional, and Schmahl, G. P., additional
- Published
- 2023
- Full Text
- View/download PDF
10. REEF WARS: MONITORING AND PREDICTING PHASE SHIFTS ON FLORIDA CORAL REEFS
- Author
-
Conkling, Megan (author), Pomponi, Shirley A. (Thesis advisor), Hindle, Tobin (Thesis advisor), Florida Atlantic University (Degree grantor), Department of Geosciences, Charles E. Schmidt College of Science, Conkling, Megan (author), Pomponi, Shirley A. (Thesis advisor), Hindle, Tobin (Thesis advisor), Florida Atlantic University (Degree grantor), Department of Geosciences, and Charles E. Schmidt College of Science
- Abstract
Reefs off the coast of Florida face threats from stressors associated with climate change which leads to phase shifts. Under rapid climate change, a clear understanding of how reefs and their benthic organisms respond is still lacking and needs to be investigated. Using in situ imagery, a sponge cell model, and long-term benthic biota surveys, the effects of climate change on reef dynamics were explored in this dissertation project. Results from the in situ imagery found that differences in spectral signatures are found between functional groups (i.e., corals, sponges, and algae) and different species from substrate. Results based on a sponge cell model and transcriptomics data have found a resilience of these sponges to the predicted thermal extremes. Results from benthic biota surveys suggested that depth and light attenuation have the largest influence on the predicted distribution of corals, sponges, and algae at Pulley Ridge. Climate change has been impacting reef benthic biota starting at the organismal scale up to the reef scale. This research demonstrates the importance of monitoring reefs at a finer scale and determining the thresholds and limits of benthic biota to projected thermal extremes to better inform resource managers to preserve these irreplaceable ecosystems., 2023, Includes bibliography., Degree granted: Dissertation (PhD)--Florida Atlantic University, 2023., Collection: FAU Electronic Theses and Dissertations Collection
- Published
- 2023
11. pH Regulation and Tissue Coordination Pathways Promote Calcium Carbonate Bioerosion by Excavating Sponges
- Author
-
Webb, Alice E., Pomponi, Shirley A., van Duyl, Fleur C., Reichart, Gert-Jan, and de Nooijer, Lennart J.
- Published
- 2019
- Full Text
- View/download PDF
12. Breakthrough in Marine Invertebrate Cell Culture: Sponge Cells Divide Rapidly in Improved Nutrient Medium
- Author
-
Conkling, Megan, Hesp, Kylie, Munroe, Stephanie, Sandoval, Kenneth, Martens, Dirk E., Sipkema, Detmer, Wijffels, Rene H., and Pomponi, Shirley A.
- Published
- 2019
- Full Text
- View/download PDF
13. Phylomitogenomics bolsters the high-level classification of Demospongiae (phylum Porifera).
- Author
-
Lavrov, Dennis V., Diaz, Maria C., Maldonado, Manuel, Morrow, Christine C., Perez, Thierry, Pomponi, Shirley A., and Thacker, Robert W.
- Subjects
DEMOSPONGIAE ,SPONGES (Invertebrates) ,MOLECULAR clock ,TAPEWORMS ,CLASSIFICATION ,PALEOZOIC Era ,MOLECULAR phylogeny - Abstract
Class Demospongiae is the largest in the phylum Porifera (Sponges) and encompasses nearly 8,000 accepted species in three subclasses: Keratosa, Verongimorpha, and Heteroscleromorpha. Subclass Heteroscleromorpha contains ∼90% of demosponge species and is subdivided into 17 orders. The higher level classification of demosponges underwent major revision as the result of nearly three decades of molecular studies. However, because most of the previous molecular work only utilized partial data from a small number of nuclear and mitochondrial (mt) genes, this classification scheme needs to be tested by larger datasets. Here we compiled a mt dataset for 136 demosponge species—including 64 complete or nearly complete and six partial mt-genome sequences determined or assembled for this study—and used it to test phylogenetic relationships among Demospongiae in general and Heteroscleromorpha in particular. We also investigated the phylogenetic position of Myceliospongia araneosa, a highly unusual demosponge without spicules and spongin fibers, currently classified as Demospongiae incertae sedis, for which molecular data were not available. Our results support the previously inferred sister-group relationship between Heteroscleromorpha and Keratosa + Verongimorpha and suggest five main clades within Heteroscleromorpha: Clade C0 composed of order Haplosclerida; Clade C1 composed of Scopalinida, Sphaerocladina, and Spongillida; Clade C2 composed of Axinellida, Biemnida, Bubarida; Clade C3 composed of Tetractinellida; and Clade C4 composed of Agelasida, Clionaida, Desmacellida, Merliida, Suberitida, Poecilosclerida, Polymastiida, and Tethyida. The inferred relationships among these clades were (C0(C1(C2(C3+C4)))). Analysis of molecular data from M. araneosa placed it in the C3 clade as a sister taxon to the highly skeletonized tetractinellids Microscleroderma sp. and Leiodermatium sp. Molecular clock analysis dated divergences among the major clades in Heteroscleromorpha from the Cambrian to the Early Silurian, the origins of most heteroscleromorph orders in the middle Paleozoic, and the most basal splits within these orders around the Paleozoic to Mesozoic transition. Overall, the results of this study are mostly congruent with the accepted classification of Heteroscleromorpha, but add temporal perspective and new resolution to phylogenetic relationships within this subclass. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
14. Editorial: Deep-sea sponge ecosystems: Knowledge-based approach towards sustainable management and conservation
- Author
-
Xavier, Joana R., primary, Pomponi, Shirley A., additional, and Kenchington, Ellen L., additional
- Published
- 2023
- Full Text
- View/download PDF
15. An annotated and illustrated identification guide to common mesophotic reef sponges (Porifera, Demospongiae, Hexactinellida, and Homoscleromorpha) inhabiting Flower Garden Banks National Marine Sanctuary and vicinities
- Author
-
Diaz, Maria Cristina, Nuttall, Marissa, Pomponi, Shirley, Rützler, Klaus, Ward Klontz, Sarah, Adams, Christi, Hickerson, Emma, and Schmahl, George
- Subjects
Gulf of Mexico ,mesophotic reefs ,Algal reefs ,sponges ,biodiversity ,Porifera - Abstract
Sponges are recognized as a diverse and abundant component of mesophotic and deep-sea ecosystems worldwide. In Flower Garden Banks National Marine Sanctuary region within the northwestern Gulf of Mexico, sponges thrive among diverse biological and geological habitats between 16–200+ m deep (i.e., coral reefs and communities, algal nodules, and coralline algae reefs, mesophotic reefs, patch reefs, scarps, ridges, soft substrate, and rocky outcrops). A synoptic guide is presented, developed by studying common sponge species in the region, through direct sampling and in-situ photographic records. A total of 64 species is included: 60 are Demospongiae (14 orders), two are Hexactinellida (one order), and two are Homoscleromorpha (one order). Thirty-four taxa are identified to species and 13 were identified to have affinity with, but were not identical to, a known species. Fifteen taxa could only be identified to genus level, and the species remain as uncertain (incerta sedis), with the potential to represent new species or variants of known species. One specimen received only a family assignation. This study extends geographic or mesophotic occurrence data for eleven known species and includes several potentially new species. This work improves our knowledge of Gulf of Mexico sponge biodiversity and highlights the importance of the region for scientists and resource managers.
- Published
- 2023
16. Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model
- Author
-
Schuster, Astrid, Vargas, Sergio, Knapp, Ingrid S., Pomponi, Shirley A., Toonen, Robert J., Erpenbeck, Dirk, and Wörheide, Gert
- Published
- 2018
- Full Text
- View/download PDF
17. Sponge Hybridomas : Applications and Implications
- Author
-
Pomponi, Shirley A., Jevitt, Allison, Patel, Jignasa, and Diaz, M. Cristina
- Published
- 2013
18. ESTABLISHING A SPONGE HYBRIDOMA FOR THE IN VITRO PRODUCTION OF A MARINE NATURAL PRODUCT
- Author
-
Dougan, Cassady (author), Pomponi, Shirley A. (Thesis advisor), Florida Atlantic University (Degree grantor), Department of Marine Science and Oceanography, Charles E. Schmidt College of Science, Dougan, Cassady (author), Pomponi, Shirley A. (Thesis advisor), Florida Atlantic University (Degree grantor), Department of Marine Science and Oceanography, and Charles E. Schmidt College of Science
- Abstract
Marine sponges are one of the most prolific sources of chemical compounds with pharmaceutical importance. To establish a supply of such compounds large enough for clinical development, in vitro production methodology was investigated. Since all sponge cells do not divide in culture, it was hypothesized that the fusion of rapidly dividing cells of a sponge that does not produce any compounds of interest with cells of a nondividing but compound-producing sponge would result in a hybridoma that produces the compound of interest. In this study, hybridomas have been produced with cells of two marine sponges, Axinella corrugata, which produces the antitumor compound stevensine, and Geodia neptuni, which divides rapidly in a nutrient medium optimized for sponge cell culture. Successful hybridization and subsequent cell division and in vitro stevensine production may unlock the potential for sustainable mass production of other sponge-derived compounds., 2022, Includes bibliography., Degree granted: Thesis (MS)--Florida Atlantic University, 2022., Collection: FAU Electronic Theses and Dissertations Collection
- Published
- 2022
19. An annotated and illustrated identification guide to common mesophotic reef sponges (Porifera, Demospongiae, Hexactinellida, and Homoscleromorpha) inhabiting Flower Garden Banks National Marine Sanctuary and vicinities.
- Author
-
Cristina Díaz, Maria, Nuttall, Marissa, Pomponi, Shirley A., Rützler, Klaus, Klontz, Sarah, Adams, Christi, Hickerson, Emma L., and Schmahl, G. P.
- Subjects
MARINE parks & reserves ,CORAL reefs & islands ,FLOWER gardening ,DEMOSPONGIAE ,SPONGES (Invertebrates) ,REEFS ,ALGAL communities - Abstract
Sponges are recognized as a diverse and abundant component of mesophotic and deep-sea ecosystems worldwide. In Flower Garden Banks National Marine Sanctuary region within the northwestern Gulf of Mexico, sponges thrive among diverse biological and geological habitats between 16–200+ m deep (i.e., coral reefs and communities, algal nodules, and coralline algae reefs, mesophotic reefs, patch reefs, scarps, ridges, soft substrate, and rocky outcrops). A synoptic guide is presented, developed by studying common sponge species in the region, through direct sampling and in-situ photographic records. A total of 64 species is included: 60 are Demospongiae (14 orders), two are Hexactinellida (one order), and two are Homoscleromorpha (one order). Thirty-four taxa are identified to species and 13 were identified to have affinity with, but were not identical to, a known species. Fifteen taxa could only be identified to genus level, and the species remain as uncertain (incerta sedis), with the potential to represent new species or variants of known species. One specimen received only a family assignation. This study extends geographic or mesophotic occurrence data for eleven known species and includes several potentially new species. This work improves our knowledge of Gulf of Mexico sponge biodiversity and highlights the importance of the region for scientists and resource managers. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
20. Efforts to develop a cultured sponge cell line: revisiting an intractable problem
- Author
-
Grasela, James J., Pomponi, Shirley A., Rinkevich, Buki, and Grima, Jennifer
- Published
- 2012
21. Cell cycle analysis of primary sponge cell cultures
- Author
-
Schippers, Klaske J., Martens, Dirk E., Pomponi, Shirley A., and Wijffels, René H.
- Published
- 2011
22. An annotated and illustrated identification guide to common mesophotic reef sponges (Porifera, Demospongiae, Hexactinellida, and Homoscleromorpha) inhabiting Flower Garden Banks national marine sanctuary and vicinities
- Author
-
Diaz, Maria Cristina, Nuttall, Marissa, Pomponi, Shirley, Rützler, Klaus, Adams, Christi, Hickerson, Emma, Schmahl, George, and Ward Klontz, Sarah
- Subjects
Gulf of Mexico ,mesophotic reefs ,Biodiversity ,algal reefs ,sponges ,Porifera - Abstract
Sponges are recognized as a diverse and abundant component of mesophotic and deep-sea ecosystems worldwide. In Flower Garden Banks National Marine Sanctuary region within the northwestern Gulf of Mexico, sponges thrive among diverse biological and geological habitats between 16-200+ m deep (i.e., coral reefs and communities, algal nodule and coralline algae reefs, mesophotic reefs, patch reefs, scarps, ridges, soft substrate, and rocky outcrops). We present a synoptic guide developed by studying common sponge species in the region, through direct sampling and in situ photographic records. A total of 63 species are included: 60 are Demospongiae (14 orders), 2 are Hexactinellida (1 order), 2 are Homoscleromorpha (1 order). Thirty-nine taxa are identified to species and 11 were identified to have affinity with, but are not identical to, a known species. Thirteen taxa could only be identified to genus level at this time, and the species remain as uncertain (incerta sedis), with the potential to constitute new species or variants of known species. One specimen received only a family assignation. This study extends geographic or mesophotic occurrence data for 11 known species and includes several potentially new species. This work improves our knowledge of Gulf of Mexico sponge biodiversity and highlights the importance of the region for scientists and resource managers.
- Published
- 2022
- Full Text
- View/download PDF
23. High-Throughput Screening of a Marine Compound Library Identifies Anti-Cryptosporidium Activity of Leiodolide A
- Author
-
Bone Relat, Rachel M., primary, Winder, Priscilla L., additional, Bowden, Gregory D., additional, Guzmán, Esther A., additional, Peterson, Tara A., additional, Pomponi, Shirley A., additional, Roberts, Jill C., additional, Wright, Amy E., additional, and O’Connor, Roberta M., additional
- Published
- 2022
- Full Text
- View/download PDF
24. 3-D Culture of Marine Sponge Cells for Production of Bioactive Compounds
- Author
-
Urban-Gedamke, Elizabeth, primary, Conkling, Megan, additional, McCarthy, Peter J., additional, Wills, Paul S., additional, and Pomponi, Shirley A., additional
- Published
- 2021
- Full Text
- View/download PDF
25. The Rogar Revelle Commemorative Lecture: The Oceans and Human Health: The Discovery and Development of Marine-Derived Drugs
- Author
-
Pomponi, Shirley A.
- Published
- 2001
26. Flow Cytometry and Cell Sorting: A Technique for Analysis and Sorting of Aquatic Particles
- Author
-
Yentsch, Clarice M., Horan, Paul K., Muirhead, Katharine, Dortch, Quay, Haugen, Elin, Legendre, Louis, Murphy, Lynda S., Perry, Mary Jane, Phinney, David A., Pomponi, Shirley A., Spinrad, Richard W., Wood, Michelle, Yentsch, Charles S., and Zahuranec, Bernard J.
- Published
- 1983
27. Systematics of 'lithistid' tetractinellid demosponges from the Tropical Western Atlantic-implications for phylodiversity and bathymetric distribution
- Author
-
Schuster, Astrid, Pomponi, Shirley A., Pisera, Andrzej, Cárdenas, Paco, Kelly, Michelle, Wörheide, Gert, Erpenbeck, Dirk, Schuster, Astrid, Pomponi, Shirley A., Pisera, Andrzej, Cárdenas, Paco, Kelly, Michelle, Wörheide, Gert, and Erpenbeck, Dirk
- Abstract
Background: Among all present demosponges, lithistids represent a polyphyletic group with exceptionally well-preserved fossils dating back to the Cambrian. Knowledge of their recent diversity, particularly in the Tropical Western Atlantic Ocean (TWA) where they are common in deep waters, is scarce making any comparison between present and past major 'lithistid' faunas difficult. In addition, the lack of sufficient molecular and morphological data hamper any predictions on phylogenetic relationships or phylodiversity from this region. The Harbor Branch Oceanographic Institute (HBOI, Fort Pierce, Florida) holds the largest collection of TWA lithistid sponges worldwide, however, the majority remain to be taxonomically identified and revised. Principal Findings: In this study we provide sequences of 249 lithistid demosponges using two independent molecular markers (28S rDNA (C1-D2) and cox1 mtDNA). In addition, a morphological documentation of 70 lithistid specimens is provided in the database of the Sponge Barcoding Project (SBP). This integrated dataset represents the largest and most comprehensive of the TWA lithistids to date. The phylogenetic diversity of 'lithistid' demosponges in the Bahamas and Jamaica are high in comparison to other TWA regions; Theonellidae and Corallistidae dominate the fauna, while Neopeltidae and Macandrewiidae are rare. A proposed tetractinellid suborder, one undescribed genus and several undescribed species are recognized and the Pacific 'lithistid' genera, Herengeria and Awhiowhio, are reported from the TWA for the first time. The higher-taxa relationships of desma-bearing tetractinellids are discussed and topics for revision suggested. Conclusion: This first integrative approach of TWA 'lithistid' demosponges contributes to a better understanding of their phylogenetic affinities, diversity and bathymetric distribution patterns within the TWA. As in the Pacific, the TWA 'lithistid' demosponges dominate deep-water habitats. Deeper taxonom
- Published
- 2021
- Full Text
- View/download PDF
28. EVALUATION OF 3-D CULTURE METHODS FOR MARINE SPONGES
- Author
-
Urban-Gedamke, Elizabeth (author), Pomponi, Shirley A. (Thesis advisor), Florida Atlantic University (Degree grantor), Department of Marine Science and Oceanography, Charles E. Schmidt College of Science, Urban-Gedamke, Elizabeth (author), Pomponi, Shirley A. (Thesis advisor), Florida Atlantic University (Degree grantor), Department of Marine Science and Oceanography, and Charles E. Schmidt College of Science
- Abstract
Summary: Marine sponges are economically and environmentally valuable, but restoration, commercial, and biomedical demands exceed what wild populations and aquaculture can provide. In vitro culture of sponge cells is a promising alternative, but has remained elusive until recent breakthroughs involving improved nutrient medium M1 in two-dimensional culture. The advantages of three-dimensional over two-dimensional cell culture have been increasingly recognized. Here we report the successful 21-day culture of cells from the marine sponge Geodia neptuni using multiple three-dimensional cell culture methods: FibraCel© disks, thin hydrogel layers, gel micro droplets, and spheroid cell culture. These methods performed comparably to two-dimensional control cultures, and each method offers advantages for restoration or in vitro applications using sponge cells. Further optimization of these methods may lead to the ability to culture fully functioning sponges from dissociated, cryopreserved cells, which will reduce the need for wild harvest of sponge tissues for commercial, restoration, and biomedical purposes., 2021, Includes bibliography., Degree granted: Thesis (MS)--Florida Atlantic University, 2021., Collection: FAU Electronic Theses and Dissertations Collection
- Published
- 2021
29. Sponge-derived 18S rRNA genes
- Author
-
Hesp, Kylie, van der Heijden, Jans M.E., Munroe, Stephanie, Sipkema, Detmer, Martens, Dirk E., Wijffels, Rene H., Pomponi, Shirley A., Hesp, Kylie, van der Heijden, Jans M.E., Munroe, Stephanie, Sipkema, Detmer, Martens, Dirk E., Wijffels, Rene H., and Pomponi, Shirley A.
- Abstract
Characterization of eukaryotic diversity in marine sponges, characterization of eukaryotic diversity in marine sponges
- Published
- 2021
30. Systematics of ‘lithistid’ tetractinellid demosponges from the Tropical Western Atlantic—implications for phylodiversity and bathymetric distribution
- Author
-
Schuster, Astrid, primary, Pomponi, Shirley A., additional, Pisera, Andrzej, additional, Cárdenas, Paco, additional, Kelly, Michelle, additional, Wörheide, Gert, additional, and Erpenbeck, Dirk, additional
- Published
- 2021
- Full Text
- View/download PDF
31. The Early Evolution of the Phosphagen Kinases—Insights from Choanoflagellate and Poriferan Arginine Kinases
- Author
-
Conejo, Maria, Bertin, Matt, Pomponi, Shirley A., and Ellington, W. Ross
- Published
- 2008
- Full Text
- View/download PDF
32. Conservation and Phylogeny of a Novel Family of Non-Hox Genes of the Antp Class in Demospongiae (Porifera)
- Author
-
Richelle-Maurer, Evelyn, Boury-Esnault, Nicole, Itskovich, Valeria B., Manuel, Michaël, Pomponi, Shirley A., Van de Vyver, Gisèle, and Borchiellini, Carole
- Published
- 2006
- Full Text
- View/download PDF
33. CRISPR/Cas12a-Mediated Gene Editing in Geodia barretti Sponge Cell Culture
- Author
-
Hesp, Kylie, Flores Alvarez, John L., Alexandru, Ana Maria, van der Linden, Jip, Martens, Dirk E., Wijffels, Rene H., Pomponi, Shirley A., Hesp, Kylie, Flores Alvarez, John L., Alexandru, Ana Maria, van der Linden, Jip, Martens, Dirk E., Wijffels, Rene H., and Pomponi, Shirley A.
- Abstract
Sponges and their associated microorganisms are the most prolific source of marine natural products, and many attempts have been made at creating a marine sponge cell line to produce these products efficiently. However, limited knowledge on the nutrients sponge cells require to grow and poor genetic accessibility have hampered progress toward this goal. Recently, a new sponge-specific nutrient medium M1 has been shown to stimulate sponge cells in vitro to divide rapidly. In this study, we demonstrate for the first time that sponge cells growing in M1 can be genetically modified using a CRISPR/Cas12a gene editing system. A short sequence of scrambled DNA was inserted using a single-stranded oligodeoxynucleotide donor template to disrupt the 2′,5′-oligoadenylate synthetase gene of cells from the boreal deep-sea sponge Geodia barretti. A blue fluorescent marker gene appeared to be inserted in an intron of the same gene and expressed by a small number of G. barretti cells. Our results represent an important step toward developing an optimized continuous sponge cell line to produce bioactive compounds.
- Published
- 2020
34. HBMMD: an enhanced database of the microorganisms associated with deeper water marine invertebrates
- Author
-
Gunasekera, Aravinda S., Sfanos, Karen S., Harmody, Dedra K., Pomponi, Shirley A., McCarthy, Peter J., and Lopez, Jose V.
- Published
- 2005
- Full Text
- View/download PDF
35. Antiplasmodial Compounds from Deep-Water Marine Invertebrates
- Author
-
Wright, Amy E., primary, Collins, Jennifer E., additional, Roberts, Bracken, additional, Roberts, Jill C., additional, Winder, Priscilla L., additional, Reed, John K., additional, Diaz, Maria Cristina, additional, Pomponi, Shirley A., additional, and Chakrabarti, Debopam, additional
- Published
- 2021
- Full Text
- View/download PDF
36. Quantitative assessment of marine sponge cells in vitro: Development of improved growth medium
- Author
-
Willoughby, Robin and Pomponi, Shirley A.
- Published
- 2000
- Full Text
- View/download PDF
37. CRISPR/Cas12a-Mediated Gene Editing in Geodia barretti Sponge Cell Culture
- Author
-
Hesp, Kylie, primary, Flores Alvarez, John L., additional, Alexandru, Ana-Maria, additional, van der Linden, Jip, additional, Martens, Dirk E., additional, Wijffels, Rene H., additional, and Pomponi, Shirley A., additional
- Published
- 2020
- Full Text
- View/download PDF
38. Systematics of ‘lithistid’ tetractinellid demosponges from the Tropical Western Atlantic – implications for phylodiversity and bathymetric distribution
- Author
-
Schuster, Astrid, Pomponi, Shirley A, Pisera, Andrzej, Cárdenas, Paco, Kelly, Michelle, Wörheide, Gert, and Erpenbeck, Dirk
- Subjects
0106 biological sciences ,Tetractinellida ,Horizon 2020 ,0303 health sciences ,Deep-sea Sponge Grounds Ecosystems of the North Atlantic: an integrated approach towards their preservation and sustainable exploitation ,Grant Agreement No 679849 ,16. Peace & justice ,010603 evolutionary biology ,01 natural sciences ,lithistid demosponges ,03 medical and health sciences ,Tropical Western Atlantic ,SponGES ,Integrative taxonomy ,14. Life underwater ,European Union (EU) ,030304 developmental biology - Abstract
Background:Among all present demosponges, lithistids represent a polyphyletic group with exceptionally well preserved fossils dating back to the Cambrian. Knowledge of their recent diversity, particularly in the Tropical Western Atlantic Ocean (TWA) where they are common in deep waters, is scarce making any comparison between present and past major ‘lithistid’ faunas difficult. In addition, the lack of sufficient molecular and morphological data hamper any predictions on phylogenetic relationships or phylodiversity from this region. The Harbor Branch Oceanographic Institute (HBOI, Fort Pierce, Florida) holds the largest collection of TWA lithistid sponges worldwide, however, the majority remain to be taxonomically identified and revised. Methods/Principal Findings:In this study we provide sequences of 249 lithistid demosponges using two independent molecular markers (28S rDNA (C1-D2) and cox1 mtDNA). In addition, a morphological documentation of 70 lithistid specimens is provided in the database of the Sponge Barcoding Project (SBP). This integrated dataset represents the largest and most comprehensive of the TWA lithistids to date. The phylogenetic diversity of ‘lithistid’ demosponges in the Bahamas and Jamaica are high in comparison to other TWA regions; Theonellidae and Corallistidae dominate the fauna, while Neopeltidae and Macandrewiidae are rare. A new tetractinellid suborder, one new genus and several new species are recognized and the Pacific ‘lithistid’ genera,HerengeriaandAwhiowhio, are reported from the TWA for the first time. The higher-taxa relationships of desma-bearing tetractinellids are discussed and topics for revision suggested. Conclusion:This first integrative approach of TWA ‘lithistid’ demosponges contributes to a better understanding of their phylogenetic affinities, diversity and bathymetric distribution patterns within the TWA. As in the Pacific, the TWA ‘lithistid’ demosponges dominate deep-water habitats. Deeper taxonomic investigations will undoubtedly contribute to a better comparison between present major ‘lithistid’ faunas and their fossil record in the Mesozoic.
- Published
- 2019
- Full Text
- View/download PDF
39. Glass Sponges and Bilaterian Animals Share Derived Mitochondrial Genomic Features: A Common Ancestry or Parallel Evolution?
- Author
-
Haen, Karri M., Lang, B. Franz, Pomponi, Shirley A., and Lavrov, Dennis V.
- Published
- 2007
40. pH Regulation and Tissue Coordination Pathways Promote Calcium Carbonate Bioerosion by Excavating Sponges
- Author
-
non-UU output of UU-AW members, Stratigraphy and paleontology, Webb, Alice E., Pomponi, Shirley A., van Duyl, Fleur C., Reichart, Gert-Jan, de Nooijer, Lennart J., non-UU output of UU-AW members, Stratigraphy and paleontology, Webb, Alice E., Pomponi, Shirley A., van Duyl, Fleur C., Reichart, Gert-Jan, and de Nooijer, Lennart J.
- Published
- 2019
41. Genetic algorithm as an optimization tool for the development of sponge cell culture media
- Author
-
Munroe, Stephanie, Sandoval, Kenneth, Martens, Dirk E., Sipkema, Detmer, Pomponi, Shirley A., Munroe, Stephanie, Sandoval, Kenneth, Martens, Dirk E., Sipkema, Detmer, and Pomponi, Shirley A.
- Abstract
Sponges are rich sources of novel natural products. Production in cell cultures may be an option for supply of these compounds but there are currently no sponge cell lines. Because there is a lack of understanding about the precise conditions and nutritional requirements that are necessary to sustain sponge cells in vitro, there has yet to be a defined, sponge-specific nutrient medium. This study utilized a genetic algorithm approach to optimize the amino acid composition of a commercially available basal cell culture medium in order to increase the metabolic activity of cells of the marine sponge Dysidea etheria. Four generations of the algorithm were carried out in vitro in wet lab conditions and an optimal medium combination was selected for further evaluation. When compared to the basal medium control, there was a twofold increase in metabolic activity. The genetic algorithm approach can be used to optimize other components of culture media to efficiently optimize chosen parameters without the need for detailed knowledge on all possible interactions.
- Published
- 2019
42. Diversity of tryptophan halogenases in sponges of the genus Aplysina
- Author
-
Gutleben, Johanna, Koehorst, Jasper J., McPherson, Kyle, Pomponi, Shirley, Wijffels, René H., Smidt, Hauke, Sipkema, Detmer, Gutleben, Johanna, Koehorst, Jasper J., McPherson, Kyle, Pomponi, Shirley, Wijffels, René H., Smidt, Hauke, and Sipkema, Detmer
- Abstract
Marine sponges are a prolific source of novel enzymes with promising biotechnological potential. Especially halogenases, which are key enzymes in the biosynthesis of brominated and chlorinated secondary metabolites, possess interesting properties towards the production of pharmaceuticals that are often halogenated. In this study we used a polymerase chain reaction (PCR)-based screening to simultaneously examine and compare the richness and diversity of putative tryptophan halogenase protein sequences and bacterial community structures of six Aplysina species from the Mediterranean and Caribbean seas. At the phylum level, bacterial community composition was similar amongst all investigated species and predominated by Actinobacteria, Chloroflexi, Cyanobacteria, Gemmatimonadetes, and Proteobacteria. We detected four phylogenetically diverse clades of putative tryptophan halogenase protein sequences, which were only distantly related to previously reported halogenases. The Mediterranean species Aplysina aerophoba harbored unique halogenase sequences, of which the most predominant was related to a sponge-associated Psychrobacter-derived sequence. In contrast, the Caribbean species shared numerous novel halogenase sequence variants and exhibited a highly similar bacterial community composition at the operational taxonomic unit (OTU) level. Correlations of relative abundances of halogenases with those of bacterial taxa suggest that prominent sponge symbiotic bacteria, including Chloroflexi and Actinobacteria, are putative producers of the detected enzymes and may thus contribute to the chemical defense of their host.
- Published
- 2019
43. A new bis(indole) alkaloid from a deep-water marine sponge of the genus Spongosorites
- Author
-
Wright, Amy E., Pomponi, Shirley A., Cross,Sue S., and McCarthy, Peter
- Subjects
Alkaloids -- Analysis ,Sponges -- Research ,Antineoplastic agents -- Research ,Anti-infective agents -- Research ,Indole -- Research ,Biological sciences ,Chemistry - Abstract
A deep-water sponge of the Spongosorites genus yields a unique bis(indole) alkaloid, dragmacidin d. Spectroscopic analysis establishes its formula as C25H21BrN7O2. Dragmacidin d is unique among related sponge metabolites. It is the first bis(indole) alkaloid found with a C-4 alkyl group at the ring, the first dragmacidin with a2-aminoimidazole function and the first to have the 2(1H)-pyrazinone spacer. More important, dragmacidin d exhibits a wide range of antimicrobial activity, including inhibition of E. coli, B. subtilis and P. aeruginosa. It is also effective against the feline leukemia virus and human lung tumor cell lines.
- Published
- 1992
44. Polydiscamide A: a new bioactive depsipeptide from the marine sponge Discodermia sp
- Author
-
Gulavita, Nanda K., Gunasekera, Sarath P., Pomponi, Shirley A., and Robinson, Elise V.
- Subjects
Peptides -- Separation ,Sponges -- Research ,Biological sciences ,Chemistry - Abstract
The Caribbean marine sponge Discodermia sp. yields polydiscamide A, a discodermin depsipeptide that inhibits the growth of the human lung cancer A549. Spectroscopic, chemical degradation and analogue studies reveal a structure composed of 13 amino acids, including a unique 3-methylisoleucine. The side-chain phenylalanine is replaced by p-bromophenylalanine. The lactone ring has five instead of six amino acids. Valine and proline replace the leucine, threonine and sarcosine in the ring. Except for asparagine, which exhibits a D configuration, the common amino acids show the same absolute configuration as in other discodermins.
- Published
- 1992
45. Discorhabdella ruetzleri Díaz & Pomponi 2018, n. sp
- Author
-
Díaz, M. Cristina and Pomponi, Shirley A.
- Subjects
Discorhabdella ,Crambeidae ,Poecilosclerida ,Animalia ,Demospongiae ,Biodiversity ,Discorhabdella ruetzleri ,Taxonomy ,Porifera - Abstract
Discorhabdella ruetzleri n. sp. (Figure 2) Material collected: Holotype HBOM 003:02021 (sample 10 – V – 15 – 2 – 021). Type locality: Gulf of Mexico, north Pulley Ridge, 80 m deep, on a ledge. Mohawk ROV dive 149. Collected by John Reed. Coordinates: latitude 25 0 16.8990 N, longitude 83 0 37.7850 W. Etymology: the species is named in honor of Dr. Klaus Rützler, our mentor and an important contributor to the knowledge of sponges from the Caribbean and world-wide. External morphology: thinly encrusting (1–3 mm) with amorphous, bulgy protuberances (Fig. 2A). Surface prominently hispid microscopically. Orange reddish color alive; white in spirit. Spicules: long principal tylostyles to subtylostyles with predominantly smooth tyles, and less abundant slightly tuberose tyles in a ratio of 7:1 (Fig. 2B); principal subtylostyles measure 470– 598 –810 x 5 –10.5–13 µm in length and width; small ectosomal substylostyles with smooth elongated tyles (260– 300 –340 x 3–4 –7.55 µm), sigmas (12–18 x – 29.6 – 40 x 2.5 – 5 – 7.5 µm, with spiny heads 7.5 – 15 – 20 µm wide (Fig. 2C, D); some pseudoastrose acanthostyles with a smoothly elongated apical spine, others with spiny areas distal from the terminal end of the apical spine (Fig. 2C, E); several smaller smooth forms of the acanthostyles are considered early growth forms of this spicule category. Extremely thin microspined oxea (15–18 µm Skeleton: The skeletal arrangement consists of a hymedesmoid arrangement of a single layer of large principal tylostyles to subtylostyles, which pierce the sponge surface. The tyles of the principal megascleres are embedded in a spongin layer that is also echinated by densely packed pseudoastrose acanthostyles; ectosomal smooth subtylostyles are around and between the principal choanosomal subtylostyles. Sigmas and microxea are abundant in the ectosome. Two isochelae observed in the choanosme in one transversal section. Remarks: Pseudoastrose acanthostyles typical of genus, and with the apical spine described for D. hindei Boury-Esnault, Pansini & Uriz, 1992 and D. urizae Maldonado, Carmona, Van Soest, & Pomponi 2001 are abundant in this species (Fig. 2C). The species presents skeletal similarities to D. urizae and D. littoralis, the two species described from the eastern Pacific side of Panama. D. ruetzleri n. sp. is very similar in skeletal composition to D. urizae Maldonado et al. 2001, a dark red thin crust originally collected on a boulder between 53 – 75 m deep in the Gulf of Chiriqui, off the Pacific coast of Panama, and later collected from the Gulf of California at 344 m (Aguilar-Camacho et al. 2012). The main difference between D. ruetzleri n. sp. and D. urizae is the predominance of smooth tylostyles (both ectosomal and choanosomal) in D. ruetzleri n. sp. versus the predominant and strongly tuberose tyles of D. urizae principal choanosomal tylostyles. The species are futher distinguished by the thickness of the principal tylostyles and the considerably smaller microoxea in D. ruetzleri n. sp. (Table 1). The discretely spined microxea of D. urizae and the shape and size of the pseudoastrose acanthostyles, with the spinose bulgy tyle and shortened spined base are very similar to D. ruetzleri n. sp., suggesting a potential common origin of these two species. D. littoralis Maldonado et al. 2001 from the eastern Pacific lacks isochela, while in D. ruetzleri n. sp. they are very rare but observed in one skeletal section. The smooth subtylostyles of D. littoralis share similarity with the subtylostyles of D. ruetzleri n. sp. The color in D. urizae is described as dark red, and D. littoralis is bright red orange, while for D. ruetzleri n. sp. the color is orange reddish that in spirit becomes completely white.
- Published
- 2018
- Full Text
- View/download PDF
46. Discorhabdella ruetzleri D��az & Pomponi 2018, n. sp
- Author
-
D��az, M. Cristina and Pomponi, Shirley A.
- Subjects
Discorhabdella ,Crambeidae ,Poecilosclerida ,Animalia ,Demospongiae ,Biodiversity ,Discorhabdella ruetzleri ,Taxonomy ,Porifera - Abstract
Discorhabdella ruetzleri n. sp. (Figure 2) Material collected: Holotype HBOM 003:02021 (sample 10 ��� V ��� 15 ��� 2 ��� 021). Type locality: Gulf of Mexico, north Pulley Ridge, 80 m deep, on a ledge. Mohawk ROV dive 149. Collected by John Reed. Coordinates: latitude 25 0 16.8990 N, longitude 83 0 37.7850 W. Etymology: the species is named in honor of Dr. Klaus R��tzler, our mentor and an important contributor to the knowledge of sponges from the Caribbean and world-wide. External morphology: thinly encrusting (1���3 mm) with amorphous, bulgy protuberances (Fig. 2A). Surface prominently hispid microscopically. Orange reddish color alive; white in spirit. Spicules: long principal tylostyles to subtylostyles with predominantly smooth tyles, and less abundant slightly tuberose tyles in a ratio of 7:1 (Fig. 2B); principal subtylostyles measure 470��� 598 ���810 x 5 ���10.5���13 ��m in length and width; small ectosomal substylostyles with smooth elongated tyles (260��� 300 ���340 x 3���4 ���7.55 ��m), sigmas (12���18 x ��� 29.6 ��� 40 x 2.5 ��� 5 ��� 7.5 ��m, with spiny heads 7.5 ��� 15 ��� 20 ��m wide (Fig. 2C, D); some pseudoastrose acanthostyles with a smoothly elongated apical spine, others with spiny areas distal from the terminal end of the apical spine (Fig. 2C, E); several smaller smooth forms of the acanthostyles are considered early growth forms of this spicule category. Extremely thin microspined oxea (15���18 ��m Skeleton: The skeletal arrangement consists of a hymedesmoid arrangement of a single layer of large principal tylostyles to subtylostyles, which pierce the sponge surface. The tyles of the principal megascleres are embedded in a spongin layer that is also echinated by densely packed pseudoastrose acanthostyles; ectosomal smooth subtylostyles are around and between the principal choanosomal subtylostyles. Sigmas and microxea are abundant in the ectosome. Two isochelae observed in the choanosme in one transversal section. Remarks: Pseudoastrose acanthostyles typical of genus, and with the apical spine described for D. hindei Boury-Esnault, Pansini & Uriz, 1992 and D. urizae Maldonado, Carmona, Van Soest, & Pomponi 2001 are abundant in this species (Fig. 2C). The species presents skeletal similarities to D. urizae and D. littoralis, the two species described from the eastern Pacific side of Panama. D. ruetzleri n. sp. is very similar in skeletal composition to D. urizae Maldonado et al. 2001, a dark red thin crust originally collected on a boulder between 53 ��� 75 m deep in the Gulf of Chiriqui, off the Pacific coast of Panama, and later collected from the Gulf of California at 344 m (Aguilar-Camacho et al. 2012). The main difference between D. ruetzleri n. sp. and D. urizae is the predominance of smooth tylostyles (both ectosomal and choanosomal) in D. ruetzleri n. sp. versus the predominant and strongly tuberose tyles of D. urizae principal choanosomal tylostyles. The species are futher distinguished by the thickness of the principal tylostyles and the considerably smaller microoxea in D. ruetzleri n. sp. (Table 1). The discretely spined microxea of D. urizae and the shape and size of the pseudoastrose acanthostyles, with the spinose bulgy tyle and shortened spined base are very similar to D. ruetzleri n. sp., suggesting a potential common origin of these two species. D. littoralis Maldonado et al. 2001 from the eastern Pacific lacks isochela, while in D. ruetzleri n. sp. they are very rare but observed in one skeletal section. The smooth subtylostyles of D. littoralis share similarity with the subtylostyles of D. ruetzleri n. sp. The color in D. urizae is described as dark red, and D. littoralis is bright red orange, while for D. ruetzleri n. sp. the color is orange reddish that in spirit becomes completely white., Published as part of D��az, M. Cristina & Pomponi, Shirley A., 2018, New Poecilosclerida from mesophotic coral reefs and the deep-sea escarpment in the Pulley Ridge region, eastern Gulf of Mexico: Discorhabdella ruetzleri n. sp. (Crambeidae) and Hymedesmia (Hymedesmia) vaceleti n. sp. (Hymedesmiidae), pp. 229-237 in Zootaxa 4466 (1) on pages 232-234, DOI: 10.11646/zootaxa.4466.1.17, http://zenodo.org/record/1442092, {"references":["Boury-Esnault, N., Pansini, M. & Uriz, M. J. (1992) A new Discorhabdella (Porifera, Demospongiae), a new Tethyan relict of pre-Messinian biota. Journal of Natural History, 26, 1 - 7. https: // doi. org / 10.1080 / 00222939200770011","Maldonado, M., Carmona, M. C., Van Soest, R. W. M. & Pomponi, S. A. (2001) First record of the sponge genera Crambe and Discorhabdella for the eastern Pacific, with description of three new species. Journal of Natural History, 35 (9), 1261 - 1276. https: // doi. org / 10.1080 / 002229301750384293","Aguilar-Camacho, J. M. & Carballo, J. L. (2012) New and little-known Poecilosclerid sponges from the Mexican Pacific Ocean. Zoological Studies, 51 (7), 1139 - 1153."]}
- Published
- 2018
- Full Text
- View/download PDF
47. Callyspongia (Callyspongia) pedroi Busutil & Garc��a-Hern��ndez & D��az & Pomponi 2018, sp. nov
- Author
-
Busutil, Linnet, Garc��a-Hern��ndez, Mar��a R., D��az, M. Cristina, and Pomponi, Shirley A.
- Subjects
Haplosclerida ,Callyspongia pedroi ,Animalia ,Demospongiae ,Biodiversity ,Callyspongia ,Callyspongiidae ,Taxonomy ,Porifera - Abstract
Callyspongia (Callyspongia) pedroi sp. nov. (Figs. 1a���e, 2a���d) Material examined. Holotype: ANC 0 2.034, Cuba, Joint Cuba ��� U.S. Expedition R/ V F.G. Walton Smith, site C��� 12A, Faro Roncali (W coast, Cuba), 21.868604�� N 84.962657�� W, depth 62.5 m, mesophotic coral reef, 22 May 2017, Collectors: M. C. D��az & L. Busutil. Description. External morphology: Delicate cylindrical branches (3���6 mm in diameter, 10���14 cm long) that rarely anastomose, smooth surface to the naked eye, microconulose when observed microscopically (Fig. 1a���e). No distinct base, but specimens attach to the substrate at a few points. Oscules 1���3 mm in diameter (Fig. 1d���e), oval and flush with the surface, separated by 3���4 mm, arranged in rows on one side of the branch. The diameter at the tips sharply decreases, ending always in a pointed, bent end. Color light reddish to pink externally, tan internally. Tan in alcohol. Smooth surface, but rough to the touch. Soft, flimsy in consistency. No sand or foreign material on the surface. Subdermal round cavities (0.5���1 mm), abundant throughout the body, are evident to the naked eye (Fig. 1d). Spicules: Fusiform oxeas (Fig. 2d), 60��� 82.4 ���100 x 1.25��� 2.5 ���5 ��m. Skeleton: Ectosome and choanosome have well���developed primary and secondary tangential fibers (Fig. 2a��� c); no tertiaries can be distinguished. Primary fibers (20���40 ��m in diameter); secondary fibers (10���15 ��m in diameter). In the ectosome, large meshes (120���425 ��m in diameter) and smaller meshes (50���350 ��m). In the choanosome, a longitudinal section of the branch shows a peripheral condensation of the skeleton, with regular and condensed meshes at the surface that become more variable towards the interior of the branch. Meshes are angular, with various shapes ranging from triangular, to square or polygonal. Large primary meshes range from 200���500 ��m diameter, while smaller secondary meshes are 40���330 ��m. All fibers are cored, primaries with 1���6 spicules, and secondaries with 1���3 spicules (Fig. 2c). The presence of a peripheral condensation of the reticulation, and overall skeletal morphology indicates the closeness of this species with the subgenus Callyspongia Duchassaing & Michelotti, 1864. Distribution and ecology. Northwest, west, southwest, southeast and northeast coasts of Cuba (Table 2), mesophotic coral reef, depth range 44.4���102.4 m. At site C���50 (Table 1, depth 91.1 m) another specimen of similar size (12 cm long) and pink in color, similar to the holotype (Fig. 1b), was observed but not collected. Remarks. Based on external morphology, primarily the delicate nature of the branches, Callyspongia (C.) pedroi sp. nov. is similar to Callyspongia arcesiosa De Laubenfels, 1936 and Callyspongia (C.) densasclera Lehnert & Van Soest, 1999. However, Callyspongia (C.) pedroi sp. nov. differs from Callyspongia arcesiosa by the larger size of its fibers, and the diameter of the meshes that are at least double in size. The spicules of Callyspongia (C.) pedroi sp. nov. are 30% of the size of the spicules of Callyspongia (C.) densasclera, which is also described as having an abnormally dense conglomeration of spicules (measuring 184���232 x 6.5���8 ��m) in the fibers, a fact not observed for Callyspongia (C.) pedroi sp. nov. Callyspongia (C.) densasclera has hastate oxeas, occasionally styles, while in Callyspongia (C.) pedroi sp. nov., oxeas are always fusiform (Tables 3, 4)., Published as part of Busutil, Linnet, Garc��a-Hern��ndez, Mar��a R., D��az, M. Cristina & Pomponi, Shirley A., 2018, Mesophotic sponges of the genus Callyspongia (Demospongiae, Haplosclerida) from Cuba, with the description of two new species in Zootaxa 4466 (1), DOI: 10.11646/zootaxa.4466.1.9, http://zenodo.org/record/1442124, {"references":["Duchassaing de Fonbressin, P. & Michelotti, G. (1864) Spongiaires de la mer Caraibe. Natuurkundige Uerhandelingen van de Hollandsche Maatschappij der Wetenschappen te Haarlem, 21 (2), 1 - 124.","De Laubenfels, M. W. (1936) A discussion of the sponge fauna of the Dry Tortugas, in particular, and the West Indies in general, with material for a revision of the families and orders of the Porifera. Carnegie Institution of Washington Publication, 467 (Tortugas Laboratory Paper 30), 1 - 225.","Lehnert, H. & Van Soest, R. W. M. (1999) More North Jamaican deep fore - reef sponges. Beaufortia, 49 (12), 141 - 169."]}
- Published
- 2018
- Full Text
- View/download PDF
48. Hymedesmia (Hymedesmia) vaceleti D��az & Pomponi 2018, n. sp
- Author
-
D��az, M. Cristina and Pomponi, Shirley A.
- Subjects
Poecilosclerida ,Animalia ,Demospongiae ,Biodiversity ,Hymedesmiidae ,Hymedesmia vaceleti ,Hymedesmia ,Taxonomy ,Porifera - Abstract
Hymedesmia (Hymedesmia) vaceleti n. sp. (Figure 3) Material collected: Holotype HBOM 0 0 3:0 2020 (sample 19 ��� IX ��� 11 ��� 1 ��� 007). Type locality: Gulf of Mexico, south of Pulley Ridge, 773 m deep, escarpment, on sediment. Collected by John Reed and Shirley Pomponi. Coordinates: latitude 24 0 39.600 N, longitude 83o55.0420 W. Etymology: The species is named in honor of Dr. Jean Vacelet, our mentor and an important contributor to the knowledge of sponge systematics and ecology from the Mediterranean, the Indian Ocean and the Caribbean. External morphology: Blue, with irregular whitish spots, thin crust (1 mm thick), forming small patches (1 ��� 4 cm 2), growing over snails, sides of solitary corals, and calcareous tubes (Fig. 3A). Surface smooth and shiny. Discretely microhispid microscopically. Spicules: Large acanthostyles (280 ������ 345 ��� 400 x 10 ��� 10.3 ��� 12.5 ��m), with inflated head and large tuberculated spines (30 ��� 35 ��m diameter) (Fig. 3C); smaller acanthostyles (100 ��� 137 ��� 150 x 7.5 ��� 9 ��� 10 ��m) with spiny heads (12.5 ��� 15 ��m in diameter) microspined all along (Fig. 3D); tornotes with stongyloid to styloid morphology (370 ��� 461 ��� 540 x 7.5 ��� 8 ��� 10 ��m) (Fig. 3B); abundant arcuate isochela 45 ��� 60 ��m long, and a thick flattened shaft 5 ��� 10 ��m thick (Fig. 3E ��� F). Skeleton: An hymedesmioid arrangement of large and small acanthostyles, that stand singly erect on a strong spongin basal layer, and tornotes that are strewn in the choanosome and in the ectosome (Fig. 3C). Remarks: The combination of an intense blue color, large tornotes (> 400 ��m in length), and the size of the acanthostyles differentiate H. (H.) vaceleti n.sp. from other Hymedesmia spp. from the western Atlantic (Table 2). The closest species among the previously described Hymedesmia (Table 2) is H. (H.) nummota De Laubenfels 1936, a thin pale gray crust (0.5 ��� 2 mm thick), with an irregularly lumpy surface growing on a piece of dead coral, collected in deep water (1047 m) off the coast of Florida (between Dry Tortugas and Cuba). The other seven species of Hymedesmia currently described from the western Atlantic have considerably smaller and thinner tornotes (H. (H). nummota differ in size ranges from those in H. (H.) vaceleti n. sp. The size of the two types of acanthotylostyles of H. (H.) nummota are triple the length of those in H. (H.) vaceleti n. sp., while the tornote strongyloids of H. (H.)vaceleti n. sp. can be 100 ��m smaller than those in H. (H.) nummota. The size range of tornotes is very conserved and a significant character that distinguishes the different species of Hymedesmia from the western Atlantic (Van Soest, 2009). Therefore, taking into account the tremendous disparity in the size of acanthotylostyles and the distinct blue color of H. (H.) vaceleti, we consider these differences sufficient evidence to classify the Pulley Ridge specimen as a different species from H.(H.) nummota., Published as part of D��az, M. Cristina & Pomponi, Shirley A., 2018, New Poecilosclerida from mesophotic coral reefs and the deep-sea escarpment in the Pulley Ridge region, eastern Gulf of Mexico: Discorhabdella ruetzleri n. sp. (Crambeidae) and Hymedesmia (Hymedesmia) vaceleti n. sp. (Hymedesmiidae), pp. 229-237 in Zootaxa 4466 (1) on page 234, DOI: 10.11646/zootaxa.4466.1.17, http://zenodo.org/record/1442092, {"references":["De Laubenfels, M. W. (1936) A discussion of the sponge fauna of the Dry Tortugas in particular and the West Indies in general, with material for a revision of the families and orders of the Porifera. Carnegie Institute of Washington, 467 (30), 1 - 225.","Van Soest, R. W. M. (2009) New sciophilous sponges from the Caribbean (Porifera: Demospongiae). Zootaxa, 2107, 1 - 40."]}
- Published
- 2018
- Full Text
- View/download PDF
49. Callyspongia (Cladochalina) alcoladoi Busutil & Garc��a-Hern��ndez & D��az & Pomponi 2018, sp. nov
- Author
-
Busutil, Linnet, Garc��a-Hern��ndez, Mar��a R., D��az, M. Cristina, and Pomponi, Shirley A.
- Subjects
Haplosclerida ,Animalia ,Demospongiae ,Biodiversity ,Callyspongia alcoladoi ,Callyspongia ,Callyspongiidae ,Taxonomy ,Porifera - Abstract
Callyspongia (Cladochalina) alcoladoi sp. nov. (Figs. 3a���e, 4a���d) Material examined. Holotype: ANC 0 2.035, Cuba, Joint Cuba ��� U.S. Expedition R/V F.G. Walton Smith, site C��� 53B, Punta del Fraile (NW Punta Mais��, Eastern tip of Cuba), 20.323166�� N 74.232412�� W, depth 51.5 m, mesophotic coral reef, 5 June 2017, Collectors: M.C. D��az & L. Busutil. Description. External morphology: Delicate, smooth ropey and cylindrical branches (3���8 mm in diameter, 20��� 30 cm long), profusely branching and anastomosing, with a few spiny projections (2���4 mm wide, 2���4 cm long) that occasionally arise from the branches. The diameter is variable along the length of the branches, sharply decreasing at the tips, ending always in pointed ends (Fig. 3a���e). No distinct base, but specimens fixed to the substrate in two or three points. Oscules (1���2 mm in diameter) round and slightly sunken in relation to the surface (Fig. 3d���e), located in rows on one side of the branch, at variable positions (0.2���2 cm apart). Color gray-pinkish externally, tan internally. Tan in alcohol. Very smooth surface, visually and to the touch. Firm but compressible in consistency. No sand or foreign material on the surface. Abundant subdermal round cavities (0.25���0.8 mm) throughout the sponge are visible to the naked eye (Fig. 3d). Spicules: Oxeas (Fig. 4d), mostly mucronate, few fusiform, 67.6��� 73.3 ��� 85 x 1.5��� 2.3 ���3 ��m. Skeleton: Ectosome well���developed primary, secondary and tertiary tangential reticulation (Fig. 4 a���c). Primary fibers (30���150 ��m in diameter), secondary fibers (15���30 ��m) and tertiary fibers (8���16 ��m), with primary meshes (80���250 ��m), secondary meshes (70���210 ��m) and tertiary meshes (30���70 ��m). In the choanosome, a longitudinal section of the branch shows primary fibers (30���110 ��m in diameter) that run longitudinally along the branches and are connected by secondary fibers (8���25 ��m). Primaries occasionally anastomose forming wide, large meshes (60���500 ��m), while secondary or smaller, more abundant meshes (40���200 ��m) occur within them. Meshes are angular with various shapes ranging from triangular, to square or polygonal. Only primary and secondary fibers are cored, primaries with 1���6 spicules, and secondaries with 1���2 spicules (Fig. 4c). The pronounced development of a tertiary reticulation in the ectosome suggests the inclusion of this species in the subgenus Cladochalina Carter, 1885, despite the smooth surface of this species. Distribution and ecology. East wall of Bah��a de Cochinos (S coast of Cuba) and Punta del Fraile (NW Punta Mais��, Eastern tip of Cuba)(Table 2), mesophotic coral reef, depth range: 51.5���73.4 m. A larger specimen (approx. 1 m long) highly ramified and yellowish in color (Fig. 3b) was observed but not collected. Remarks. Callyspongia (C.) alcoladoi sp. nov. does not represent the typical Cladochalina, which is characterized, by having the primaries forming bundles or fibrofascicles, and usually have species with spinose surface projections (i.e. mention here a couple of common Cladochalina species with spiny projections). However, the highly developed tertiary reticulation in the ectosome (typical among Cladochalina species), and the lack of a peripheral condensation in the reticle typical of the subgenus Callyspongia support the closer similarity of Callyspongia (C.) alcoladoi sp. nov. to this subgenus. The occasional spinose projections observed in Callyspongia (C.) alcoladoi sp. nov. may represent certain similarity to the spinose projections found in Cladochalina species. A comparative molecular study is necessary to validate the phylogenetic value of the current subgenera classification and the evolutionary relationships within the Callyspongia genus. Callyspongia (C.) pedroi sp. nov., Callyspongia (C.) alcoladoi sp. nov. and Callyspongia (C.) strongylophora Hartman, 1955 have similar characteristics, such as lack of a distinct base, and branches with oscules arranged in rows. However, Callyspongia (C.) strongylophora forms a tangled mass of irregularly anastomosing and dividing branches, with strongylote spicules, while the other two species are branching, rarely anastomosing, and have oxeas as spicules (Tables 3, 4). Callyspongia (C.) alcoladoi sp. nov. and Callyspongia (C.) scutica Van Soest, 2017 are close in morphology, due to their smooth surface and pointed ends of the branches, but Callyspongia (C.) scutica branches are often somewhat flattened, with a tendency to have the branches in one plane, while Callyspongia (C.) alcoladoi sp. nov. has cylindrical branches, and branches in multiple planes. Furthermore, the primaries of Callyspongia (C.) alcoladoi sp. nov. in the ectosome are much thicker than those ones of Callyspongia (C.) scutica, and the fusiform oxeas are much larger in Callyspongia (C.) scutica (Tables 3, 4). Etymology. Both species are dedicated to Dr. Pedro M. Alcolado, who dedicated his life to the study of marine sponges and made important contributions to the knowledge of Caribbean sponge taxonomy and ecology., Published as part of Busutil, Linnet, Garc��a-Hern��ndez, Mar��a R., D��az, M. Cristina & Pomponi, Shirley A., 2018, Mesophotic sponges of the genus Callyspongia (Demospongiae, Haplosclerida) from Cuba, with the description of two new species in Zootaxa 4466 (1), DOI: 10.11646/zootaxa.4466.1.9, http://zenodo.org/record/1442124, {"references":["Hartman, W. D. (1955) A Collection of Sponges from the West Coast of the Yucatan Peninsula with Descriptions of Two New Species. Bulletin of Marine Science of the Gulf and Caribbean, 5 (3), 161 - 189.","Van Soest, R. W. M. (2017) Sponges of the Guyana Shelf. Zootaxa, 4217 (1), 1 - 225. https: // doi. org / 10.11646 / zootaxa. 4217.1.1"]}
- Published
- 2018
- Full Text
- View/download PDF
50. Callyspongia Duchassaing & Michelotti 1864
- Author
-
Busutil, Linnet, García-Hernández, María R., Díaz, M. Cristina, and Pomponi, Shirley A.
- Subjects
Haplosclerida ,Animalia ,Demospongiae ,Biodiversity ,Callyspongia ,Callyspongiidae ,Taxonomy ,Porifera - Abstract
Genus Callyspongia Duchassaing & Michelotti, 1864 Type species: Callyspongia fallax Duchassaing & Michelotti, 1864 (by subsequent designation; Burton 1934). Diagnosis: Growth form varying greatly, from massive to ramose, lamellate, foliaceous to infundibuliform, tubular or lobate, repent or erect. Ectosomal skeleton a tangential network formed by secondary and, in places, finer tertiary fibers (triple mesh ectosomal layer), or less ramified and with regular size of mesh (single mesh ectosomal layer). Choanosomal skeleton, a well���developed network of primary longitudinal fibers, fasciculated or non��� fasciculated, spongin sheath always present. Primary fibers ramified to form secondary and tertiary fine fibers and a tertiary choanosomal network, or non���ramified, connected by short, parallel, non���ramified, secondary fibers. There may be a peripheral condensation of the choanosomal skeleton (Desqueyroux��� Fa��ndez & Valentine 2002)., Published as part of Busutil, Linnet, Garc��a-Hern��ndez, Mar��a R., D��az, M. Cristina & Pomponi, Shirley A., 2018, Mesophotic sponges of the genus Callyspongia (Demospongiae, Haplosclerida) from Cuba, with the description of two new species in Zootaxa 4466 (1), DOI: 10.11646/zootaxa.4466.1.9, http://zenodo.org/record/1442124, {"references":["Duchassaing de Fonbressin, P. & Michelotti, G. (1864) Spongiaires de la mer Caraibe. Natuurkundige Uerhandelingen van de Hollandsche Maatschappij der Wetenschappen te Haarlem, 21 (2), 1 - 124.","Burton, M. (1934) Sponges. Scientific Reports of the Great Barrier Reef Expedition 1928 - 29, 4 (14), 513 - 621.","Desqueyroux-Faundez, R. & Valentine, C. (2002) Family Callyspongiidae de Laubenfels, 1936. In: Hooper, J. N. A. & Van Soest, R. W. M. (Eds.), Systema Porifera, a guide to the Classification of sponges. Uol. I. Kluwer Academic / Plenum Publishers, New York, pp. 835 - 851. https: // doi. org / 10.1007 / 978 - 1 - 4615 - 0747 - 5 _ 90"]}
- Published
- 2018
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.