48 results on '"Paudyal S"'
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2. Peripartal rumination dynamics and health status in cows calving in hot and cool seasons
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Paudyal, S., Maunsell, F., Richeson, J., Risco, C., Donovan, A., and Pinedo, P.
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- 2016
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3. Effects of prolonged lock-up time on milk production and health of dairy cattle
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Papinchak, L., primary, Paudyal, S., additional, and Pineiro, J., additional
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- 2022
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4. Waiting time in the premilking holding pen and subsequent lying and walking behaviors of Holstein cows
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Manríquez, D., primary, Zúñiga, S., additional, Paudyal, S., additional, Solano, G., additional, and Pinedo, P.J., additional
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- 2022
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5. Lying and stepping behaviors around corrective or therapeutic claw trimming
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Paudyal, S., primary, Lombard, J.E., additional, Melendez, P., additional, Roman-Muniz, I.N., additional, Callan, R.J., additional, Maunsell, F., additional, and Pinedo, P., additional
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- 2021
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6. Using rumination time to manage health and reproduction in dairy cattle: a review
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Paudyal, S., primary
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- 2021
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7. BIM of transport infrastructure – practical aspects of data collection for DTM creation
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Gulin, V N, primary, Neretin, A A, additional, and Paudyal, S P, additional
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- 2020
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8. Use of milk electrical conductivity for the differentiation of mastitis causing pathogens in Holstein cows – ERRATUM
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Paudyal, S., primary, Melendez, P., additional, Manriquez, D., additional, Velasquez-Munoz, A., additional, Pena, G., additional, Roman-Muniz, I.N., additional, and Pinedo, P.J., additional
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- 2020
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9. Molecular phylogenetic analysis and generic delimitations in tribe Chiococceae (Cinchonoideae, Rubiaceae)
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Paudyal, S. K., Delprete, Piero, Neupane, S., and Motley, T. J.
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Neotropics ,Caribbean Region ,Pacific islands ,Amphi-Pacific distribution - Abstract
Tribe Chiococceae (Cinchonoideae, Rubiaceae) are morphologically diverse, ranging from subshrubs, erect or scandent shrubs, vines, treelets to tall trees, with an extreme variation in shape and size of corolla and several fruit types. The tribe also exhibits a case of amphi-Pacific distribution. Although previous studies have established the monophyly of the tribe, which is confirmed here, intergeneric and intrageneric relationships in Chiococceae were not well-resolved. This study presents the most comprehensive molecular phylogenetic study to date, including 27 genera and 125 species. Taxonomic affinities and evolutionary relationships discussed in this study are based on the phylogenetic tree generated by analysing molecular sequence data of two nuclear (ETS, ITS) and two plastid (petD, trnL-F) regions using Bayesian and maximum likelihood methods. Based on the present results, 30 genera are recognized in Chiococceae. Adolphoduckea, Coutareopsis, Motleyothamnus and Ramonadoxa are newly described. Ceuthocarpus, Morierina and Phyllacanthus are synonymized under Schmidtottia, Thiollierea and Catesbaea, respectively. Catesbaea, Salzmannia, Schmidtottia, Solenandra and Thiollierea are re-circumscribed. Nineteen new combinations are proposed.
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- 2018
10. Analytic Considerations and Design Basis for the IEEE Distribution Test Feeders
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Schneider, K. P., primary, Mather, B. A., additional, Pal, B. C., additional, Ten, C.-W., additional, Shirek, G. J., additional, Zhu, H., additional, Fuller, J. C., additional, Pereira, J. L. R., additional, Ochoa, L. F., additional, de Araujo, L. R., additional, Dugan, R. C., additional, Matthias, S., additional, Paudyal, S., additional, McDermott, T. E., additional, and Kersting, W., additional
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- 2018
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11. Effect of aluminized reflective hutch covers on calf health and performance
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Manriquez, D., primary, Valenzuela, H., additional, Paudyal, S., additional, Velasquez, A., additional, and Pinedo, P.J., additional
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- 2018
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12. Rumination time and monitoring of health disorders during early lactation
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Paudyal, S., primary, Maunsell, F.P., additional, Richeson, J.T., additional, Risco, C.A., additional, Donovan, D.A., additional, and Pinedo, P.J., additional
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- 2018
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13. Using molecular, morphological, and palynological evidence to transfer strumpfia maritima to the monotypic tribe Strumpfieae (Cinchonoideae, Rubiaceae), and a re-delimitation of the tribe Chiococceae
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Paudyal, S. K., Delprete, Piero, and Motley, T. J.
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Chiococceae ,phylogeny ,systematics ,tribal delimitation - Abstract
Strumpfia maritime is a morphologically unique member of the Rubiaceae that has held several taxonomic placements for a long time. In the most recent tribal delimitations within the subfamily Cinchonoideae, Strumpfia was included in the tribe Chiococceae, based solely on molecular phylogenetic positioning, despite the presence of significant morphological and palynological differences between Strumpfia and the other genera of the tribe. Previous studies refrained from including Strumpfia in the Chiococceae because of its numerous morphological and palynological differences, and the inclusion of Strumpfia creates a tribe without a single synapomorphy. Our study of genetic divergences among the tribes of the subfamily Cinchonoideae using trnL-F data, analyzed using both maximum parsimony and Bayesian inference, provides additional evidence for including Strumpfia in the monotypic tribe Strumpfieae.
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- 2014
14. Assessment of bacterial load in broiler chicken meat from the retail meat shops in Chitwan, Nepal
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Bhandari, N, primary, Nepali, DB, primary, and Paudyal, S, primary
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- 2013
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15. Study on the prevalence of Cryptosporidium in calves and HIV infected humans in the periphery of river basins of Kathmandu valley
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Paudyal, S, primary, Karna, SR, primary, Khatiwada, SJ, primary, Joshi, LR, primary, Tiwari, A, primary, and Shrestha, SP, primary
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- 2013
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16. Optimal Operation of Distribution Feeders in Smart Grids
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Paudyal, S., primary, Canizares, C. A., additional, and Bhattacharya, K., additional
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- 2011
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17. Early Feeding and Discontinuation of Intravenous Fluid After Laparoscopic Cholecystectomy.
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Shah, J. N., Maharjan, S. B., Manandhar, K., Paudyal, S., Shrestha, S., Shah, S., and Lamichane, D.
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- 2012
18. Evaluating machine learning algorithms to predict lameness in dairy cattle.
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Neupane R, Aryal A, Haeussermann A, Hartung E, Pinedo P, and Paudyal S
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- Animals, Cattle, Female, Accelerometry methods, Gait physiology, Lameness, Animal diagnosis, Lameness, Animal physiopathology, Machine Learning, Cattle Diseases diagnosis, Cattle Diseases physiopathology, Algorithms, Dairying methods
- Abstract
Dairy cattle lameness represents one of the common concerns in intensive and commercial dairy farms. Lameness is characterized by gait-related behavioral changes in cows and multiple approaches are being utilized to associate these changes with lameness conditions including data from accelerometers, and other precision technologies. The objective was to evaluate the use of machine learning algorithms for the identification of lameness conditions in dairy cattle. In this study, 310 multiparous Holstein dairy cows from a herd in Northern Colorado were affixed with a leg-based accelerometer (Icerobotics® Inc, Edinburg, Scotland) to obtain the lying time (min/d), daily steps count (n/d), and daily change (n/d). Subsequently, study cows were monitored for 4 months and cows submitted for claw trimming (CT) were differentiated as receiving corrective claw trimming (CCT) or as being diagnosed with a lameness disorder and consequent therapeutic claw trimming (TCT) by a certified hoof trimmer. Cows not submitted to CT were considered healthy controls. A median filter was applied to smoothen the data by reducing inherent variability. Three different machine learning (ML) models were defined to fit each algorithm which included the conventional features (containing daily lying, daily steps, and daily change derived from the accelerometer), slope features (containing features extracted from each variable in Conventional feature), or all features (3 simple features and 3 slope features). Random forest (RF), Naive Bayes (NB), Logistic Regression (LR), and Time series (ROCKET) were used as ML predictive approaches. For the classification of cows requiring CCT and TCT, ROCKET classifier performed better with accuracy (> 90%), ROC-AUC (> 74%), and F1 score (> 0.61) as compared to other algorithms. Slope features derived in this study increased the efficiency of algorithms as the better-performing models included All features explored. However, further classification of diseases into infectious and non-infectious events was not effective because none of the algorithms presented satisfactory model accuracy parameters. For the classification of observed cow locomotion scores into severely lame and moderately lame conditions, the ROCKET classifier demonstrated satisfactory accuracy (> 0.85), ROC-AUC (> 0.68), and F1 scores (> 0.44). We conclude that ML models using accelerometer data are helpful in the identification of lameness in cows but need further research to increase the granularity and accuracy of classification., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2024 Neupane et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
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- 2024
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19. A Curious Case of Weakness: Antineutrophil Cytoplasmic Antibody-Associated Vasculitis Presenting With Muscle Weakness.
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Okoye OC, Paudyal S, Iriza SE, and Wilson J
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Disease manifestations of antineutrophil cytoplasmic antibody (ANCA)-associated vasculitis (AAV), a small vessel vasculitis with multisystemic effects, include respiratory, renal, nervous, gastrointestinal, and skin implications. Muscle weakness and inflammatory myopathy are rare manifestations of AAV. We report the case of a 77-year-old female with a medical history of hypothyroidism and osteoarthritis who presented with a two-month history of worsening muscle weakness (mainly proximal). She endorsed dysphagia, a 40-lb unintentional weight loss, and persistent sinusitis with middle ear effusions, requiring bilateral tympanostomy. The physical examination was notable for 2/5 muscle strength in her hip flexors and extensors, with 4/5 strength in other extremities. Lower extremity MRI showed diffuse intramuscular edema between fat planes and intramuscular septal regions. Erythrocyte sedimentation rate (70 mm/hr), C-reactive protein (141 mg/L), creatine kinase (690 U/L), and anti-myeloperoxidase (MPO) antibodies (>999 AU/mL) were elevated. A thigh biopsy revealed fibrinoid necrosis of small intramuscular arteries, confluent circumferential granulomatous vessel wall inflammation, and associated mild chronic inflammation, including occasional eosinophils and a few plasma cells. She was diagnosed with MPO-positive AAV. The patient was started on high-dose steroids (prednisone), with a taper on a disease-modifying agent, azathioprine, with significant improvement in symptoms over the next four months and complete resolution at 16-month follow-up. This patient's clinical presentation of predominant lower extremity weakness due to inflammatory myositis is an unusual manifestation of AAV. Clinicians should keep a broad differential diagnosis and consider the possibility of AAV, especially in cases of muscle weakness presenting as inflammatory myositis, in the absence of other clinical manifestations of systemic vasculitis or specific myositis serologies., Competing Interests: Human subjects: Consent was obtained or waived by all participants in this study. Conflicts of interest: In compliance with the ICMJE uniform disclosure form, all authors declare the following: Payment/services info: All authors have declared that no financial support was received from any organization for the submitted work. Financial relationships: All authors have declared that they have no financial relationships at present or within the previous three years with any organizations that might have an interest in the submitted work. Other relationships: All authors have declared that there are no other relationships or activities that could appear to have influenced the submitted work., (Copyright © 2024, Okoye et al.)
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- 2024
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20. Design thinking for engaged learning in animal science: lessons from five semesters of a senior capstone course.
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Brandão AP, Donaldson JP, Dunlap KA, Wiegert JG, Kao S, and Paudyal S
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This study presents a design-based research approach involving five iterations (semester) of implementing design thinking for engaged learning (DTEL) in an animal science capstone course. DTEL scaffolds design thinking into 10 stages for collaborative project-based learning to foster skills like problem solving and teamwork. Across five semesters (spring 2021 to spring 2023), student reflections ( n = 276) were analyzed to identify aspects that worked well or were challenging. Network analysis visualized relationships ( P < 0.05; Q > 0.4) between codes representing strengths, struggles, and alignment with principles from learning theories. Utilizing the relationships between strengths and theory-based principles to address struggles, resulted in changes to the design of the capstone course each iteration (time that the course was taught). The complexity of maps increased over iterations. Initially, struggles were prominent but decreased as responsive design refinements were made. Alignment of student experiences with principles from learning theories grew substantially from the first iteration to the last (theory-related nodes representing 11.4% vs. 24.4% in each network map, respectively), with learning theories also occupying more central positions in the last map (iteration five) compared to earlier ones (iterations one through four). These changes suggest student experiences increasingly aligned with principles of cognitive constructivism, social constructivism, constructionism, situated learning, and transformative learning. Design principles derived from the five-iteration study include: (1) allocating most time to hands-on lab work vs. lecture, (2) designating a coordinator faculty, (3) scaffolding for instructors unfamiliar with DTEL, (4) emphasizing consistency in processes over grades, and (5) intentionally developing teamwork skills. The study demonstrates the value of design-based research for iteratively refining and studying learning experiences to foster critical skills for undergraduate students in animal science., Competing Interests: The authors Alice Poggi Brandão; Jeffrey Glennon Wiegert; Sushil Paudyal and Kathrin Anson Dunlap served as instructors for Animal Science Capstone (ANSC 498), during the data collection period. None of the authors have any potential conflict of interest to disclose., (© The Author(s) 2024. Published by Oxford University Press on behalf of the American Society of Animal Science.)
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- 2024
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21. A Rare Case of Persistent Left Superior Vena Cava Coexisting With Valvulopathies and Complete Heart Block.
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Paudyal S, Thakur AK, Abdelkarim AZ, and Zakir FA
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Persistent left superior vena cava (PLSVC) is a rare congenital vascular anomaly that is often detected incidentally during cardiovascular imaging or interventions. Coexisting PLSVC with mitral regurgitation (MR), aortic stenosis (AS), aortic regurgitation (AR), and complete heart block (CHB) are exceptionally rare and have not been reported in the literature to our knowledge. We present the case of a 50-year-old male with PLSVC coexisting with severe MR, mild AS/AR, and CHB who successfully underwent permanent pacemaker (PPM) implantation and mitral valve replacement. Comprehensive diagnostic evaluation and tailored management strategies are crucial for achieving significant improvement in the patient's symptoms. The presence of PLSVC adds complexity to diagnosis and management, necessitating multidisciplinary collaboration for optimal patient care., Competing Interests: The authors have declared that no competing interests exist., (Copyright © 2023, Paudyal et al.)
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- 2023
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22. Cholesterol Granuloma in the Maxillary Sinus: A Rare Presentation Associated With an Odontogenic Cyst.
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Abdelkarim AZ, Fereir A, Elzayat AM, Lozanoff S, and Paudyal S
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Cholesterol granuloma is a histopathological finding characterized by a mass of connective tissue and granulation tissue. It is primarily observed in the middle ear, mastoid process, or paranasal sinuses, with rare occurrences in the dental odontogenic region. A dentigerous cyst encloses the crown of an unerupted tooth by expanding its follicle and attaches to the neck of the tooth. Here, we report a 63-year-old female who presented to the dental clinic complaining of an ill-fitted denture. A panoramic radiograph showed a well-defined radiolucent lesion in the upper left maxillary sinus with an impacted third molar. Computed tomography revealed loss of the anterior and lateral sinus walls. The cyst was enucleated surgically. The final diagnosis was confirmed by histopathological examination, which revealed focal areas of cholesterol clefts in the cystic wall of the dentigerous cyst., Competing Interests: The authors have declared that no competing interests exist., (Copyright © 2023, Abdelkarim et al.)
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- 2023
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23. Moderate Stress Level among Patients Undergoing Hemodialysis in a Tertiary Care Centre.
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Dhungana M, Shrestha P, Pandey S, Paudyal S, and Agrawal KK
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- Humans, Female, Male, Tertiary Care Centers, Cross-Sectional Studies, Renal Dialysis, Research Design, Mental Disorders
- Abstract
Introduction: Stress is the response of body to any change. The end stage of renal disease and the process of haemodialysis treatment are long-term stressors that alter patients' well-being and everyday lifestyle. The aim of this study was to find out the prevalence of moderate stress levels among patients undergoing hemodialysis in a tertiary care centre., Methods: A descriptive cross-sectional study was conducted among patients undergoing hemodialysis from 1 October 2021 to 30 September 2022. Ethical clearance from the Institutional Review Committee. Patients undergoing maintenance haemodialysis for at least 3 months were included in the study. Convenience sampling method was used. The point estimate was calculated at a 95% Confidence Interval., Results: Among 118 patients, 82 (69.49%) (61.18-77.80, 95% Confidence Interval) had moderate stress levels, out of which 51 (62.20%) were male and 31 (37.80%) were female., Conclusions: The prevalence of moderate stess level was found to be higher than other studies done in similar settings., Keywords: hemodialysis; prevalence; psychiatric disorders.
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- 2023
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24. Laparoscopic Appendectomy versus Open Appendectomy in Acute Appendicitis.
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Nepal YJ, Paudyal S, Shah S, and Giri N
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- Humans, Appendectomy, Prospective Studies, Nepal, Acute Disease, Pain, Postoperative, Postoperative Complications, Appendicitis, Laparoscopy
- Abstract
Background: Appendectomy is the most common emergency surgical procedure performed. Appendectomy is performed by either open or laparoscopic methods. However, there is lack of consensus regarding the most appropriate method. This study aimed to compare the outcomes of laparoscopic and open appendectomy in the treatment of acute appendicitis., Methods: Fifty-two patients undergoing appendectomy were analyzed in this prospective comparative study, with 26 patients each in laparoscopic and open group. The outcomes were measured in terms of operative time, postoperative pain at 4, 6 and 12 hours, length of hospital stay, postoperative complications according to modified Clavien Dindo classification and cost analysis., Results: Laparoscopic group had longer time after completion of surgery till exit from operation theatre (30 min in laparoscopic and 20 min in open, p<0.01) and significantly higher cost (Nrs. 26295 for laparoscopic and Nrs. 19575 for open, p<0.01) than open appendectomy. Operative time, time from entering operation theatre till being kept in operation table, time from being kept in operation table till initiation of anesthesia, postoperative pain at 4,6 and 12 hours and postoperative complications were insignificant in both groups., Conclusions: The results suggest that laparoscopic appendectomy group had longer recovery time after operation and was costlier than open appendectomy. Thus, the decision of the operative procedure can be based on the patient's preference.
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- 2023
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25. Suicidal Attempt among Psychiatry Patients Presented to the Department of Emergency of a Tertiary Care Centre: A Descriptive Cross-sectional Study.
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Jha P, Subedi S, Paudyal S, and Panta PP
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- Female, Humans, Male, Cross-Sectional Studies, Suicidal Ideation, Tertiary Care Centers, Suicide, Attempted psychology, Psychiatry
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Introduction: More than 700, 000 people die due to suicide every year. Suicide is the fourth leading cause of death among 15-29 year-olds. A total of 77% of global suicides occur in low- and middle-income countries. There is an increasing number of suicide all over the world. There is limited data regarding this issue. The available data are based on police reports or on specific populations. The aim of this study was to find out the prevalence of suicidal attempts among psychiatry patients presented to the Department of Emergency of a tertiary care centre., Methods: A Descriptive cross-sectional study was done in a tertiary care centre from January 2019 to July 2020 after taking Ethical approval from the same institute. Beck Suicide Intent Scale, MINI-7, IPDE and PLESS were used to assess suicidal intent, psychiatric comorbidities, personality disorder and life stress event scores respectively. Bronfenbrenner's Social Ecological Model was used to access various stressors. Point estimate and 95% Confidence Interval were calculated., Results: The Prevalence of suicidal attempts among psychiatry patients in the emergency department was 265 (24.50%), (21.66-26.74, 95% Confidence Interval). The majority were females 135 (51%). The majority attempted at home 238 (89.81%). Poisoning was the most common mode of attempting suicide., Conclusions: The Prevalence of suicidal attempts among psychiatry patients was higher than in the other studies done in similar settings., Keywords: comorbidity; cross-sectional studies; prevalence; psychosocial factors; suicide attempt.
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- 2023
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26. Synchronous Primary Adenocarcinoma of Distal Common Bile Duct and Gall bladder.
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Bohara TP, Paudyal S, Chaudhary P, and Joshi MR
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- Humans, Gallbladder, Nepal, Common Bile Duct pathology, Bile Duct Neoplasms pathology, Adenocarcinoma diagnosis, Adenocarcinoma surgery, Adenocarcinoma pathology
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Synchronous primary cancer of the gall bladder and distal common bile duct is rare. There are only few case reports and case series available of these synchronous cancers. Management of this tumor is individualized in these case reports and series based upon the presentation. We present a case of a patient who had multifocal adenocarcinoma involving distal common bile duct and gall bladder. Keywords: Distal common bile duct cancer; gall bladder cancer; synchronous primary.
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- 2022
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27. Interfacial behavior of Proteinase K enzyme at air-saline subphase.
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Paudyal S, Sigdel G, Shah SK, Sharma SK, Grubb JD, Micic M, Caseli L, and Leblanc RM
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- Endopeptidase K, Protein Structure, Secondary, Spectrometry, Fluorescence, Spectrophotometry, Infrared, Surface Properties, Water chemistry
- Abstract
This study investigates the interfacial behavior of the proteinase K enzyme at air-water interface. Adsorption of enzyme on the surface was induced using saline subphase. The surface packing and stability of the enzyme was investigated using of surface pressure-area (π-A) and surface potential-area (ΔV-A) isotherms. Proteinase K enzyme forms film at air-aqueous interface and demonstrates good stability as shown through compression-decompression cycle experiments. To characterize the surface assembly morphology of the interfacial enzymes UV-vis and fluorescence spectroscopic techniques were used. The data revealed that the enzyme Langmuir monolayer has good homogeneity with no evidence of aggregates during compression. The secondary structure of the enzyme at interface was determined to be α-helix using p-polarized infrared-reflection absorption spectroscopy. This was confirmed through Circular dichroism spectra of the enzyme Langmuir-Blodgett (LB) film which showed that the major conformation present were α-helices., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2022 Elsevier Inc. All rights reserved.)
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- 2022
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28. Pathways to mental health care in Nepal: a 14-center nationwide study.
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Gupta AK, Joshi S, Kafle B, Thapa R, Chapagai M, Nepal S, Niraula A, Paudyal S, Sapkota P, Poudel R, Gurung BS, Pokhrel P, Jha R, Pandit S, Thapaliya S, Shrestha S, Volpe U, and Sartorius N
- Abstract
Background: Pathways to care studies are feasible and tested means of finding the actual routes taken by patients before reaching proper care. In view of the predominance of nonprofessional service providers and the lack of previous large studies on pathways in Nepal, this multicenter study is needed. The aim of the study was to trace the various pathways and carers involved in mental health care; assess clinical variables such as the duration of untreated illness, clinical presentation and treatment; and compare geographically and culturally diverse landscapes., Methods: This was a cross-sectional, convenience sampling study performed at 14 centers where new cases were being taken. The World Health Organization Study of the Pathways-to-Care Schedule was applied. The Nepali version of the encounter form was used. The data were collected between 17 September and 16 October 2020 and were analyzed using the Statistical Package for the Social Sciences (SPSS). Additionally, perspectives from local investigators were collected and discussed., Results: Most of the first carers were native/religious faith healers (28.2%), followed by psychiatrists (26%). The median duration for the first psychiatric consultation was 3 weeks. The duration of untreated illness was 30.72 ± 80.34 (median: 4) weeks, and the time taken for this journey was 94.99 ± 274.58 (median: 30) min. The longest delay from the onset of illness to psychiatric care was for epilepsy {90.0 ± 199.0 (median: 25.5)} weeks, followed by neurotic illness {22.89 ± 73.45 (median: 2)} and psychotic illness {10.54 ± 18.28 (median: 2)} weeks. Overall, most patients with severe mental illnesses (SMIs) had their first contact with faithhealers (49%), then met with medical doctors (13%) or psychiatrists (28%). Marked differences in clinical presentation surfaced when hilly centers were compared with the Terai belt., Conclusions: Faith healers, general practitioners and hospital doctors are major carers, and the means of educating them for proper referral can be considered. The investigators see several hindrances and opportunities in the studied pathways. The employment of more mental health professionals and better mental health advocacy, public awareness programs and school education are suggested strategies to improve proper mental health care., (© 2021. The Author(s).)
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- 2021
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29. Corrigendum to "Interfacial behavior of Lactate Oxidase at Air-Subphase interface". [J. Colloid Interface Sci. 589 (2021) 173-178].
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Ferreira M, Sharma SK, Paudyal S, and Leblanc RM
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- 2021
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30. Effect of peripartal administration of mycobacterium cell wall fraction on health and fertility of Holstein cows under organic-certified management.
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Solano-Suárez G, Caixeta LS, Masic A, Manríquez D, Hatamoto-Zervoudakis L, Paudyal S, Velasquez-Munoz A, Velez J, and Pinedo PJ
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- Animals, Cattle, Cell Wall, Female, Fertility, Lactation, Milk, Postpartum Period, Pregnancy, Reproduction, Cattle Diseases epidemiology, Mycobacterium
- Abstract
The main objective of this study was to evaluate the effect of peripartal administration of a commercially available nonspecific immune stimulant (mycobacterium cell wall fraction; MCWF [Amplimune, NovaVive Inc., Napanee, ON, Canada]) on the incidence of disease during early lactation and subsequent fertility of dairy cows. A second objective was to characterize the dynamics of circulating white blood cells (WBC) and metabolic markers following treatment administration. Cows in an United States Department of Agriculture (USDA) organic-certified dairy herd were blocked by parity and, based on sequential calving dates, randomly assigned to receive two injections (5 mL s.c.) of either a placebo (saline solution) as a control (CON; n = 71) or MCWF (n = 65) at enrollment (7 d before expected calving) and within 24 h after calving. Blood samples were collected from a subsample of the study population (MCWF = 16; CON = 18) for WBC count at enrollment, at day 2 post enrollment, and at days 1, 3, 7, and 14 after calving. Serum fatty acids, beta-hydroxybutyrate, and Ca concentrations were determined at days 1 and 7 postpartum (MCWF = 21; CON = 21). Main outcome variables included incidence risk of peripartal and early lactation health disorders and pregnancy at first artificial insemination (AI), at 100, and at 150 days in milk (DIM). In addition, the average daily milk yield up to 90 DIM and death and live culling before 305 DIM were compared. Treatment effects were assessed using multivariable logistic regression, time-to-event analyses, and repeated measures analysis of variance (ANOVA). A treatment effect on the incidence risk of some of the health disorders in the study was established. Incidence risk of metritis and clinical mastitis <28 DIM was smaller in MCWF than in CON cows (36.9% vs. 50.7% and 6.3% vs. 19.7%, respectively). On the contrary, the incidence risk of respiratory disease <28 DIM was smaller in CON (0%) than in MCWF (7.7%). Reproductive performance of multiparous cows was affected by MCWF administration: pregnancy at first AI and pregnancy at 100 and 150 DIM were greater in MCWF than in CON (35.6% vs. 19.2%; 51.1% vs. 25.0%; and 64.4% vs. 40.4%, respectively). Overall, median intervals from calving to pregnancy were 90 vs. 121 d in MCWF and CON cows, respectively. No treatment effects on the dynamics of circulating WBC or in postpartum metabolic status were established. No differences for milk yield or for the proportion of cows that survived up to 305 DIM were determined, although cows in MCWF left the herd earlier than cows in CON. In conclusion, incidence risks of metritis and mastitis in early lactation were smaller in cows receiving MCWF, whereas the incidence risk of respiratory disease was smaller in CON. Fertility significantly improved in MCWF compared with CON cows. As this study was performed in an organic-certified dairy, specific health and reproductive management practices may affect the external validity of the current findings., (© The Author(s) 2021. Published by Oxford University Press on behalf of the American Society of Animal Science. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)
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- 2021
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31. Low Cluster of Differentiation 4+ T Cell Count in People Living with HIV/AIDS Undergoing Antiretroviral Therapy Visiting a Reference Laboratory: A Descriptive Cross-sectional Study.
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Kandel S, Khadka S, Lamsal M, Jha B, Paudyal S, Gautam S, Poudel S, Sharma M, and Amatya J
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- CD4 Lymphocyte Count, Cell Count, Cell Differentiation, Cross-Sectional Studies, Female, Humans, Laboratories, Male, Acquired Immunodeficiency Syndrome, HIV Infections drug therapy, HIV Infections epidemiology
- Abstract
Introduction: Human Immunodeficiency Virus is a lentivirus that causes human immunodeficiency virus infection and over time, acquired immunodeficiency syndrome. Cluster of Differentiation 4+ T cell count of people living with this infection play a vital role to determine infection progression and necessary treatment changes. This study was conducted to find out the prevalence of low Cluster of Differentiation 4+ T Cell Count in the People Living with human immunodeficiency virus/ acquired immunodeficiency syndrome., Methods: A descriptive cross-sectional study was conducted between June to August 2018 in the Human Immunodeficiency virus and Hepatitis Reference Unit of National Public Health Laboratory, Ministry of Health and Population Teku. Ethical approval was taken (Reference Number 2912) and a total of 550 seropositive cases of Human Immunodeficiency Virus-1 undergoing antiretroviral therapy were studied. Convenient sampling technique was used. Data was analysed by Statistical Package for the Social Sciences., Results: Seventeen (3.1%) of patients had Cluster of Differentiation 4+ T cell counts below 100 cells/mm3 of blood. The mean Cluster of Differentiation 4+ T cell count was 509.3 cells/mm3 of blood. Of the total samples, 280 (50.9%) were males, 268 (48.7%) were females, and the rest 2 (0.4%) were of other gender., Conclusions: Majority of people living with human immunodeficiency virus/ acquired immunodeficiency syndrome were found immune-competent.
- Published
- 2021
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32. Interfacial behavior of Lactate Oxidase at Air-Subphase interface.
- Author
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Ferreira M, Sharma SK, Paudyal S, and Leblanc RM
- Subjects
- Circular Dichroism, Mixed Function Oxygenases, Pressure, Protein Structure, Secondary, Surface Properties
- Abstract
This article investigates the main aspects of the surface chemistry properties of the lactate oxidase (LacOx) enzyme monolayer at the air-subphase interface. Surface chemistry study determined the important properties like the surface packing and stability of the formed layer, whereas the spectroscopic experiments provided information regarding its secondary structure conformation of the enzyme. We have demonstrated that the LacOx in the monolayer form remained active for extended time period. In accordance to the data obtained from the isotherm it was also found that LacOx forms a stable monolayer that does not aggregate at the air-subphase interface. The stability of the monolayer at the air-subphase interface was studied by using compression-decompression cycles which revealed the stability with no significant evidence of aggregates or irreversible domains. This was further confirmed by UV-vis absorption and fluorescence measurements. Spectra from circular dichroism (CD) showed that the LB film retains the characteristic of an α-helix conformation., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2021 Elsevier Inc. All rights reserved.)
- Published
- 2021
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33. A rare case of ovarian ectopic pregnancy with IUD in situ: A case report from Nepal.
- Author
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Koirala S, Balla P, Pokhrel A, Koirala S, Pant S, and Paudyal S
- Abstract
High index of suspicion of ectopic (much likely ovarian) pregnancy should be considered if a woman with IUD in situ presents with abdominal pain, vaginal bleeding, and positive urine pregnancy test., Competing Interests: The authors declare that they have no conflict of interest regarding the publication of this case report., (© 2020 The Authors. Clinical Case Reports published by John Wiley & Sons Ltd.)
- Published
- 2020
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34. Haploinsufficiency of cohesin protease, Separase, promotes regeneration of hematopoietic stem cells in mice.
- Author
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Kumar P, Cheng H, Paudyal S, Nakamura LV, Zhang N, Li JT, Sasidharan R, Jeong M, and Pati D
- Abstract
Cohesin recently emerged as a new regulator of hematopoiesis and leukemia. In addition to cohesin, whether proteins that regulate cohesin's function have any direct role in hematopoiesis and hematologic diseases have not been fully examined. Separase, encoded by the ESPL1 gene, is an important regulator of cohesin's function. Canonically, protease activity of Separase resolves sister chromatid cohesion by cleaving cohesin subunit-Rad21 at the onset of anaphase. Using a Separase haploinsufficient mouse model, we have uncovered a novel role of Separase in hematopoiesis. We report that partial disruption of Separase distinctly alters the functional characteristics of hematopoietic stem/progenitor cells (HSPCs). Although analyses of peripheral blood and bone marrow of Espl1
+/Hyp mice broadly displayed unperturbed hematopoietic parameters during normal hematopoiesis, further probing of the composition of early hematopoietic cells in Espl1+/Hyp bone marrow revealed a mild reduction in the frequencies of the Lin- Sca1+ Kit- (LSK) or LSK CD48+ CD150- multipotent hematopoietic progenitors population without a significant change in either long-term or short-term hematopoietic stem cells (HSCs) subsets at steady state. Surprisingly, however, we found that Separase haploinsufficiency promotes regeneration activity of HSCs in serial in vivo repopulation assays. In vitro colony formation assays also revealed an enhanced serial replating capacity of hematopoietic progenitors isolated from Espl1+/Hyp mice. Microarray analysis of differentially expressed genes showed that Separase haploinsufficiency in HSCs (SP-KSL) leads to enrichment of gene signatures that are upregulated in HSCs compared to committed progenitors and mature cells. Taken together, our findings demonstrate a key role of Separase in promoting hematopoietic regeneration of HSCs., (© 2020 AlphaMed Press.)- Published
- 2020
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35. Performance Evaluation of Probabilistic Methods Based on Bootstrap and Quantile Regression to Quantify PV Power Point Forecast Uncertainty.
- Author
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Wen Y, AlHakeem D, Mandal P, Chakraborty S, Wu YK, Senjyu T, Paudyal S, and Tseng TL
- Abstract
This paper presents two probabilistic approaches based on bootstrap method and quantile regression (QR) method to estimate the uncertainty associated with solar photovoltaic (PV) power point forecasts. Solar PV output power forecasts are obtained using a hybrid intelligent model, which is composed of a data filtering technique based on wavelet transform (WT) and a soft computing model (SCM) based on radial basis function neural network (RBFNN) that is optimized by particle swarm optimization (PSO) algorithm. The point forecast capability of the proposed hybrid WT+RBFNN+PSO intelligent model is examined and compared with other hybrid models as well as individual SCM. The performance of the proposed bootstrap method in the form of probabilistic forecasts is compared with the QR method by generating different prediction intervals (PIs). Numerical tests using real data demonstrate that the point forecasts obtained from the proposed hybrid intelligent model can be effectively used to quantify PV power uncertainty. The performance of these two uncertainty quantification methods is assessed through reliability.
- Published
- 2020
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36. Tyrosinase enzyme Langmuir monolayer: Surface chemistry and spectroscopic study.
- Author
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Paudyal S, Sharma SK, da Silva RLCG, Mintz KJ, Liyanage PY, Al-Youbi AO, Bashammakh AS, El-Shahawi MS, and Leblanc RM
- Subjects
- Spectrometry, Fluorescence, Spectrophotometry, Ultraviolet, Surface Properties, Fungal Proteins chemistry, Membranes, Artificial, Monophenol Monooxygenase chemistry
- Abstract
This study investigates the surface chemistry properties of the tyrosinase enzyme Langmuir monolayer at air-aqueous interface using sodium chloride in the subphase to induce the surface activity of the enzyme. Investigation of surface packing and stability of the tyrosinase Langmuir monolayer were performed using surface chemistry experiments while spectroscopic analysis was done to study enzyme conformation. It was found that the tyrosinase enzyme forms a fluid film at air-aqueous interface with good stability as shown by compression-decompression cycles experiments and stability measurements at various surface pressures. UV-vis absorption and fluorescence measurements at different surface pressures revealed that the Langmuir monolayer has good homogeneity with no evidence of aggregates during compression. To gain insight on the conformation of tyrosinase Langmuir monolayer p-polarized infrared-reflection absorption spectroscopy was used. It was found that at high surface pressures the predominant secondary structures were β-sheets while at lower surface pressure both α -helices and β-sheets were present. The circular dichroism spectra were obtained by transferring the Langmuir monolayer at 10 mN.m
-1 to a solid quartz support (Langmuir-Blodgett film, LB film), which showed that the major conformation present were α-helices. Images from the immobilized LB films were obtained using atomic force microscopy which showed homogenous and regular deposition with a mean thickness ranging from 3 to 4 nm., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2019 Elsevier Inc. All rights reserved.)- Published
- 2020
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- View/download PDF
37. Surface chemistry and spectroscopic studies of the native phenylalanine dehydrogenase Langmuir monolayer at the air/aqueous NaCl interface.
- Author
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da Silva RLCG, Sharma SK, Paudyal S, Mintz KJ, Caseli L, and Leblanc RM
- Abstract
This study investigates the main aspects of the surface behavior of the native phenylalanine dehydrogenase (PheDH) enzyme at the air/aqueous interface employing a saline subphase to induce the enzyme surface activity. Surface chemistry experiments were performed in order to determine the surface packing and stability of the formed layer, while spectroscopic experiments provided information regarding its secondary structure conformation. It was found that the PheDH enzyme forms a fluid film, which is quite homogeneous throughout its entire compression, being stable for long periods of time with no significant evidence of aggregates or irreversible domains during interfacial compression/decompression processes. The main secondary structures of the interfacial PheDH film were accessed via in situ reflectance-absorbance infrared spectroscopy, indicating a majority presence of α-helices, which were maintained after the film transfer to solid muscovite supports. The immobilized films presented a homogeneous and regular deposition, with controlled roughness and a mean thickness in the range of 8-10 nm., (Copyright © 2019 Elsevier Inc. All rights reserved.)
- Published
- 2020
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38. A Female with Right-Sided Thoracic Kidney with Bochdalek Hernia: A Case Report.
- Author
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Daha SK, Karn A, Shrestha N, Shrestha N, Paudyal S, and Giri N
- Subjects
- Adult, Cholecystitis complications, Cholecystitis surgery, Cholecystolithiasis complications, Cholecystolithiasis surgery, Female, Hernias, Diaphragmatic, Congenital complications, Hernias, Diaphragmatic, Congenital surgery, Humans, Thorax, Tomography, X-Ray Computed, Ultrasonography, Urogenital Abnormalities complications, Urogenital Abnormalities surgery, Cholecystectomy, Laparoscopic, Cholecystitis diagnostic imaging, Cholecystolithiasis diagnostic imaging, Hernias, Diaphragmatic, Congenital diagnostic imaging, Herniorrhaphy, Incidental Findings, Kidney abnormalities, Urogenital Abnormalities diagnostic imaging
- Abstract
The thoracic kidney is the rarest form of an ectopic kidney that usually present on the left thorax and twice more common in males. No case has been reported from Nepal and very few cases are reported worldwide. We report a 24 years-old female with right thoracic kidney with Bochdalek hernia diagnosed incidentally. We have included clinico-radiological and surgical findings of the case with a review of the literature. Keywords: Bochdalek hernia; ectopic kidney; thoracic kidney.
- Published
- 2019
39. Conjugation of Carbon Dots with β-Galactosidase Enzyme: Surface Chemistry and Use in Biosensing.
- Author
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Sharma SK, Micic M, Li S, Hoar B, Paudyal S, Zahran EM, and Leblanc RM
- Subjects
- Carbon chemistry, Enzyme Stability, Quantum Dots chemistry, Spectroscopy, Fourier Transform Infrared, Surface Properties, Biosensing Techniques, Nanoparticles chemistry, beta-Galactosidase chemistry
- Abstract
Nanoparticles have been conjugated to biological systems for numerous applications such as self-assembly, sensing, imaging, and therapy. Development of more reliable and robust biosensors that exhibit high response rate, increased detection limit, and enhanced useful lifetime is in high demand. We have developed a sensing platform by the conjugation of β-galactosidase, a crucial enzyme, with lab-synthesized gel-like carbon dots (CDs) which have high luminescence, photostability, and easy surface functionalization. We found that the conjugated enzyme exhibited higher stability towards temperature and pH changes in comparison to the native enzyme. This enriched property of the enzyme was distinctly used to develop a stable, reliable, robust biosensor. The detection limit of the biosensor was found to be 2.9 × 10
-4 M, whereas its sensitivity was 0.81 µA·mmol-1 ·cm-2 . Further, we used the Langmuir monolayer technique to understand the surface properties of the conjugated enzyme. It was found that the conjugate was highly stable at the air/subphase interface which additionally reinforces the suitability of the use of the conjugated enzyme for the biosensing applications.- Published
- 2019
- Full Text
- View/download PDF
40. Effect of a mechanical grooming brush on the behavior and health of recently weaned heifer calves.
- Author
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Velasquez-Munoz A, Manriquez D, Paudyal S, Solano G, Han H, Callan R, Velez J, and Pinedo P
- Subjects
- Animals, Female, Grooming, Housing, Animal, Social Behavior, Animal Husbandry instrumentation, Behavior, Animal, Cattle physiology
- Abstract
Background: Calf stress at weaning and during transition to group pens represents a concern in dairy operations. Favoring natural behaviors, such as grooming, may help on reducing this challenge. Our objective was to evaluate the effect of a mechanical grooming brush on behavior and health of recently weaned calves, after transferring from individual to group housing. Two treatment groups (control [CON, n = 81]; automated brush [AB, n = 81]) were compared enrolling Holstein heifers (94 ± 7 d old) that were monitored for 20 days. Four cohorts, considering one CON and one AB group (19-20 calves/pen/cohort) were enrolled sequentially. Each calf was weighed, clinically evaluated, and affixed with a 3-D accelerometer sensor attached to the ear at enrolment. Continuous measurements (min/h) were generated for the following behaviors: Not-active, active, highly active, eating, and ruminating. Cameras for continuous video recording were installed in each pen, and calves were weighted at the last day of the study (d 20). Behavioral data were summarized as daily averages (min/h). Data was examined using repeated measures analysis for nested factors, with day as the time unit., Results: Overall, calves had their first interaction with the brush within 2.5 days with a mean (SE) of 7 (±9.6) h after being transferred to group pens. A significant effect was determined for the interaction day by treatment on the time spent not-active and eating. Average not-active time was greater in CON compared to AB (22.8 ± 0.82 min/h vs. 21.7 ± 0.82 min/h), while eating time was greater in AB compared with CON (7.01 ± 0.40 min/h vs. 6.43 ± 0.40 min/h). Treatment groups had a similar weight gain and time to the first disease., Conclusions: We concluded that the use of a mechanical brush influenced behavior, reducing not-active time, while increasing eating time. The consequences of this change in activity require further investigation.
- Published
- 2019
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41. Effect of prebiotic supplementation with stabilized rice bran in milk of pre-weaned organic Holstein calves.
- Author
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Velasquez-Munoz A, Manriquez D, Paudyal S, Han H, Callan R, Ryan EP, and Pinedo P
- Subjects
- Animal Feed, Animals, Diarrhea prevention & control, Diarrhea veterinary, Eating, Feces chemistry, Immunoglobulin A analysis, Weight Gain, Animals, Newborn growth & development, Cattle growth & development, Dietary Fiber, Dietary Supplements, Oryza, Prebiotics
- Abstract
Background: The first month of life possess significant challenges for dairy calves due to high susceptibility to digestive diseases. The objective of this study was to evaluate the effect of prebiotic supplementation with stabilized rice bran (SRB) in milk on health, immunity, and performance of pre-weaned organic dairy calves. Holstein heifer calves (n = 90) were enrolled at 6 ± 1 days old and monitored for 28 days, from July to August 2017. Calves were randomly assigned to a control (CTR; n = 45) or a treatment group (SRB; n = 45). The CTR group received milk alone and the SRB group received 120 g of SRB per day in milk to achieve a 10% w/w dose of the total calories. Daily health evaluations were conducted to score health status and disease severity (healthy, slightly affected, moderately or severely sick) of calves, through integrated assessment of diarrhea, dehydration, attitude, and milk intake. Body weights and fecal IgA quantification were completed on the first and last day of the study., Results: Overall, weight gain and fecal IgA concentrations were not affected by the dietary addition of SRB. The total number of calf-days classified as healthy or sick were not different between treatment groups. Similarly, the number of calf-days categorized as slightly affected, moderately sick, or severely sick did not differ between treatment groups. Time to event analyses indicated a tendency for a treatment effect in the time to the first moderate case of diarrhea (P = 0.08), as well as in the time to recovery from diarrhea (P = 0.052), favoring control calves., Conclusions: These results indicated that the dietary addition of SRB in milk did not have an effect in health, immunity or performance of pre-weaned dairy calves.
- Published
- 2019
- Full Text
- View/download PDF
42. Relationships among quarter milk leukocyte proportions and cow and quarter-level variables under different intramammary infection statuses.
- Author
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Paudyal S, Pena G, Melendez P, Roman-Muniz IN, and Pinedo PJ
- Abstract
The use of milk leukocyte differential ( MLD ) test has been proposed as a complement to somatic cell count ( SCC ) to assess the presence and the severity of intramammary infection. However, detailed information regarding the behavior of MLD under different physiological or pathological stages of the cow is nonexistent. The objective was to analyze the association between milk leukocyte proportions provided by a commercial automated MLD test and multiple cow and quarter-level variables. The study population consisted of 104 Holstein cows (32 primiparous and 72 multiparous) in one farm. Cows were categorized by days in milk as early (<50 DIM; n =29), middle (50-250 DIM; n =25), and late lactation (>250 DIM; n = 50). Milk from 416 quarters was collected and analyzed for lymphocytes ( LYM ), neutrophils ( NEU ), and macrophages ( MAC ) counts using an automated milk fluorescence microscopy system. Concurrently, a sterile composite milk sample was collected from each cow for pathogen identification through microbiological culture. Culture results were classified as no growth ( NOG ), gram-negative ( GN ), gram-positive ( GP ), or other ( OTH ). Milk leukocyte proportions varied depending on the level of total leukocyte counts ( TLC ; P < 0.001). Similarly, leukocyte ratios (NEU:LYM, NEU:MAC, and phagocyte:LYM) were different for multiple TLC categories ( P < 0.05). There was no association between parity number and MLD; however, cows in early lactation had the greatest proportions of NEU and LYM. Leukocyte ratios varied depending on parity number and stage of lactation. Cows in the medium milk-yield category had the smallest proportions of NEU and LYM, and there was significant variation in leukocyte ratios, depending on the level of milk yield. In healthy quarters, MLD were not associated with quarter position; however, the NEU:MAC ratio was greater in rear quarters than in front quarters. In quarters with TLC >100,000, NEU% was greater in rear quarters than in front quarters ( P = 0.03). For quarters with pathogen growth, TLC was greatest for GN followed by OTH and GP ( P < 0.001). Milk LD depended on the isolated pathogen group, although the magnitudes of the differences were small. Although the changes in the proportions of leukocytes in milk were associated with categories of TLC, levels of milk yield, and mastitis-causing pathogen groups, the deviations were small in magnitude. Additional research is necessary to determine the potential applications for this methodology., (© The Author(s) 2018. Published by Oxford University Press on behalf of the American Society of Animal Science.)
- Published
- 2018
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- View/download PDF
43. The prevalence of Escherichia coli O157:H7 fecal shedding in feedlot pens is affected by the water-to-cattle ratio: A randomized controlled trial.
- Author
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Beauvais W, Gart EV, Bean M, Blanco A, Wilsey J, McWhinney K, Bryan L, Krath M, Yang CY, Manriquez Alvarez D, Paudyal S, Bryan K, Stewart S, Cook PW, Lahodny G Jr, Baumgarten K, Gautam R, Nightingale K, Lawhon SD, Pinedo P, and Ivanek R
- Subjects
- Animals, Cattle, Colony Count, Microbial, Multivariate Analysis, Real-Time Polymerase Chain Reaction, Risk Factors, Weather, Drinking Water microbiology, Escherichia coli O157 isolation & purification, Feces microbiology
- Abstract
Escherichia coli O157:H7 fecal shedding in feedlot cattle is common and is a public health concern due to the risk of foodborne transmission that can result in severe, or even fatal, disease in people. Despite a large body of research, few practical and cost-effective farm-level interventions have been identified. In this study, a randomized controlled trial was conducted to assess the effect of reducing the level of water in automatically refilling water-troughs on fecal shedding of E. coli O157:H7 in feedlot cattle. Pens in a feedlot in the Texas Panhandle were randomly allocated as control (total number: 17) or intervention (total number: 18) pens. Fecal samples (2,759 in total) were collected both at baseline and three weeks after the intervention, and tested for the presence of E. coli O157:H7 using immunomagnetic bead separation and selective culture. There was a strong statistical association between sampling date and the likelihood of a fecal sample testing positive for E. coli O157:H7. Pen was also a strong predictor of fecal prevalence. Despite accounting for this high level of clustering, a statistically significant association between reduced water levels in the trough and increased prevalence of E. coli O157:H7 in the feces was observed (Odds Ratio = 1.6; 95% Confidence Interval: 1.2-2.0; Likelihood Ratio Test: p = 0.02). This is the first time that such an association has been reported, and suggests that increasing water-trough levels may be effective in reducing shedding of E. coli O157:H7 in cattle feces, although further work would be needed to test this hypothesis. Controlling E. coli O157:H7 fecal shedding at the pre-harvest level may lead to a reduced burden of human foodborne illness attributed to this pathogen in beef.
- Published
- 2018
- Full Text
- View/download PDF
44. Evolution of woody life form on tropical mountains in the tribe Spermacoceae (Rubiaceae).
- Author
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Neupane S, Lewis PO, Dessein S, Shanks H, Paudyal S, and Lens F
- Subjects
- Biological Evolution, Ecosystem, Phylogeny, Rubiaceae anatomy & histology, Rubiaceae classification, Wood anatomy & histology, Wood classification, Wood genetics, Rubiaceae genetics
- Abstract
Premise of the Study: Spermacoceae are mainly an herbaceous group in the Rubiaceae. However, a few lineages are woody and are found in a diverse range of habitat types. Three of the largest woody lineages ( Arcytophyllum , Hedyotis , and Kadua ) are characterized by their distribution in the moist tropical mountains and have disjunct distribution patterns with respect to their closest relatives. In this study, we explore the cases of derived woodiness in these three lineages and their diversification dynamics in the tropical mountains of Asia, the Pacific, and the Americas., Methods: By combining phylogenetic results with wood anatomical studies, we estimated timing of origin of the three woody groups, inferred their ancestral traits and ancestral distribution ranges, analyzed their associations with the tropical upland habitat, and elucidated their diversification across tropical mountains., Key Results: The three woody clades originated and diversified from herbaceous ancestors in close association with the tropical upland habitat during the Miocene. The ancestral range for Asian-Pacific Hedyotis is Africa/Madagascar and continental Asia for Pacific Kadua . The complex geological history of tropical Asia allowed Hedyotis to diversify faster and create narrow endemics near oceans in the highlands of the Western Ghats in India, Sri Lanka, Southeast Asia including southeastern China, and New Guinea., Conclusions: The three major woody clades in Spermacoceae have gained their woodiness independently from one another, subsequent to colonization by their ancestors from a different geographic environment. The evolution and diversification along the tropical mountain orogeny is strongly linked with the formation of woody habit and many narrow endemic species., (© 2017 Botanical Society of America.)
- Published
- 2017
- Full Text
- View/download PDF
45. A case report of PVOD patient combined with pulmonary embolism: Anticoagulation or not?
- Author
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Yuan X, Hou X, Guo W, Jiang H, Zheng J, Paudyal S, and Lyu Y
- Subjects
- Aged, Humans, Male, Pulmonary Embolism prevention & control, Pulmonary Veno-Occlusive Disease diagnosis, Pulmonary Veno-Occlusive Disease drug therapy, Anticoagulants therapeutic use, Pulmonary Embolism etiology, Pulmonary Veno-Occlusive Disease complications, Warfarin therapeutic use
- Abstract
Rationale: Pulmonary veno-occlusive disease (PVOD) is a rare form of pulmonary arterial hypertension (PAH). Oral anticoagulation is confined to patients with idiopathic PAH (IPAH), but no oral anticoagulation has been recommended for PVOD, because occult pulmonary hemorrhage was a common finding in PVOD., Patient Concerns: We report a case of PVOD, who was misdiagnosed as IPAH for 5 years with worsening dyspnea and two episodes of pulmonary embolism (PE)., Diagnoses: He was confirmed as PVOD combined with PE by biopsy of the explanted lung specimen., Interventions: He took oral anticoagulation, warfarin, to treat his first-time PE in July 2010, and his disease was kept stable for about 4 years, until he discontinued the anticoagulation therapy by himself sometime in 2014. Later on, a life-threatening PE recurred in January 2015, so he resumed the anticoagulation therapy., Outcomes: Fortunately, the bilateral sequential lung transplantation that was performed in July 2015 in time saved his life. He has been living well without dyspnea and the echocardiography showed the normalizations of the once increased pulmonary arterial pressure and the once enlarged right ventricle of his heart. In addition, to the best of my knowledge, he was the first PVOD patient receiving lung transplantation in China., Lessons: We recommend that PVOD patients combined with PE should be treated with anticoagulation therapy indefinitely to prevent the recurrence of life-threatening PE until they get a chance for lung transplantation.
- Published
- 2017
- Full Text
- View/download PDF
46. Mechanism of Ribonuclease III Catalytic Regulation by Serine Phosphorylation.
- Author
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Gone S, Alfonso-Prieto M, Paudyal S, and Nicholson AW
- Subjects
- Bacteriophage T7 enzymology, Hydrolysis, Kinetics, Molecular Dynamics Simulation, Phosphorylation, Protein Kinases metabolism, RNA metabolism, Escherichia coli enzymology, Escherichia coli Proteins metabolism, Protein Processing, Post-Translational, Ribonuclease III metabolism, Serine metabolism
- Abstract
Ribonuclease III (RNase III) is a conserved, gene-regulatory bacterial endonuclease that cleaves double-helical structures in diverse coding and noncoding RNAs. RNase III is subject to multiple levels of control, reflective of its global regulatory functions. Escherichia coli (Ec) RNase III catalytic activity is known to increase during bacteriophage T7 infection, reflecting the expression of the phage-encoded protein kinase, T7PK. However, the mechanism of catalytic enhancement is unknown. This study shows that Ec-RNase III is phosphorylated on serine in vitro by purified T7PK, and identifies the targets as Ser33 and Ser34 in the N-terminal catalytic domain. Kinetic experiments reveal a 5-fold increase in kcat and a 1.4-fold decrease in Km following phosphorylation, providing a 7.4-fold increase in catalytic efficiency. Phosphorylation does not change the rate of substrate cleavage under single-turnover conditions, indicating that phosphorylation enhances product release, which also is the rate-limiting step in the steady-state. Molecular dynamics simulations provide a mechanism for facilitated product release, in which the Ser33 phosphomonoester forms a salt bridge with the Arg95 guanidinium group, thereby weakening RNase III engagement of product. The simulations also show why glutamic acid substitution at either serine does not confer enhancement, thus underscoring the specific requirement for a phosphomonoester.
- Published
- 2016
- Full Text
- View/download PDF
47. Fluffy Periostitis Induced by Voriconazole.
- Author
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Paudyal S, Dummer S, Battu P, Taylor S, Sharma S, and Carbone L
- Subjects
- Aged, Humans, Humerus diagnostic imaging, Male, Periostitis diagnostic imaging, Radiography, Antifungal Agents adverse effects, Periostitis chemically induced, Voriconazole adverse effects
- Published
- 2015
- Full Text
- View/download PDF
48. Routine use of antibiotic prophylaxis in low-risk laparoscopic cholecystectomy is unnecessary: a randomized clinical trial.
- Author
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Shah JN, Maharjan SB, and Paudyal S
- Subjects
- Adolescent, Adult, Aged, Child, Female, Humans, Male, Middle Aged, Surgical Wound Infection epidemiology, Treatment Outcome, Young Adult, Anti-Bacterial Agents therapeutic use, Antibiotic Prophylaxis, Cefazolin therapeutic use, Cholecystectomy, Laparoscopic, Preoperative Care methods, Surgical Wound Infection prevention & control
- Abstract
Background: Laparoscopic cholecystectomy uses smaller incision and trocars that lessen the contamination and exposure of wound, resulting in less infection. However, the antibiotic prophylaxis is still widely practiced, like in our institute, a continuation of the era of open surgery. Recent studies reveal no advantage of routine use of antibiotic, and there is growing consensus against it. Besides cost, antibiotic increases emergence of multidrug resistance. Because of the controversies, we conducted this clinical trial., Methods: This randomized clinical trial, conducted from October 1, 2009 to September 31, 2010 at Patan Hospital, included 154 patients in prophylactic antibiotic group (GrAP) with cefazolin 1 g IV as per existing practice and 156 in no antibiotic group (GrAPn). Symptomatic laparoscopic cholecystectomy patients of American Society of Anesthesiologist (ASA) 1 and 2 (without diabetes) were included. Patients with complicated gall stones (cholangitis, choledocholithiasis, and pancreatitis) and who required conversion were excluded. Wound was observed during follow-up within 1 week. Data on patient characteristics, use of antibiotic, bile spillage, and postoperative wound infection were entered in predesigned proforma. Microsoft Excel was used to analyze the data., Results: In total, 310 patients were eligible for analysis, 154 in GrAP and 156 in GrAPn. Both groups were comparable in patient demographic and clinical characteristics such as average age (40.3 vs. 41.6 years) and sex (female 77.6% vs. 78.6%). Overall wound infection occurred in 4.8% (15/310). There was no significant difference in wound infections among the two groups (p = 0.442): GrAP 3.9% and GrAPn 5.8%. There was no mortality in this series., Conclusion: Routine preoperative antibiotic prophylaxis is not necessary in low-risk symptomatic gallstone patients undergoing laparoscopic cholecystectomy., (Copyright © 2012. Published by Elsevier B.V.)
- Published
- 2012
- Full Text
- View/download PDF
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