113 results on '"Paik D"'
Search Results
2. Retraction Note: An apoptosis-enhancing drug overcomes platinum resistance in a tumour-initiating subpopulation of ovarian cancer
- Author
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Janzen, D. M., Tiourin, E., Salehi, J. A., Paik, D. Y., Lu, J., Pellegrini, M., and Memarzadeh, S.
- Published
- 2020
- Full Text
- View/download PDF
3. Correction: Corrigendum: An apoptosis-enhancing drug overcomes platinum resistance in a tumour-initiating subpopulation of ovarian cancer
- Author
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Janzen, D. M., Tiourin, E., Salehi, J. A., Paik, D. Y., Lu, J., Pellegrini, M., and Memarzadeh, S.
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- 2016
- Full Text
- View/download PDF
4. RETRACTED ARTICLE: An apoptosis-enhancing drug overcomes platinum resistance in a tumour-initiating subpopulation of ovarian cancer
- Author
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Janzen, D. M., Tiourin, E., Salehi, J. A., Paik, D. Y., Lu, J., Pellegrini, M., and Memarzadeh, S.
- Published
- 2015
- Full Text
- View/download PDF
5. Bacillus-derived poly-γ-glutamic acid reciprocally regulates the differentiation of T helper 17 and regulatory T cells and attenuates experimental autoimmune encephalomyelitis
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Lee, K., Hwang, S., Paik, D. J., Kim, W. K., Kim, J. M., and Youn, J.
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- 2012
- Full Text
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6. Dielectric and piezoelectric properties of perovskite materials at cryogenic temperatures
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Paik, D.-S., Park, S.-E., Shrout, T. R., and Hackenberger, W.
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- 1999
- Full Text
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7. Theory of the elastic constants of the rare gas solids
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Paik, D. S.
- Subjects
530.412 - Abstract
Some general results for thermoelastic quantities are derived by considering a solid in different states of strained reference frames. It is shown that simple relationships hold between the nth order and the volume derivatives of (n-1)th order elastic constants. Explicit expressions for these results are obtained for a cubic solid. The contribution to thermoelastic properties of the inert gas solids Ne, A, Kr and Xe for long-range three-body forces of the form given by Axilrod and Teller are calculated. The second order elastic constants C[ij] and the third order elastic constants C[ijk] are calculated at the absolute zero assuming only two-body forces. The approach employed here was not the standard lattice dynamical methods. Instead, an Einstein model modified for anisotropic effects and including correlation as a perturbation was used. This model was found to be more flexible than the standard lattice dynamical approach. Where possible comparision with standard lattice dynamical methods was made. It is shown that although both, the three-body forces and the two-body zero-point effects violate the Cauchy relations they do so in opposite sense. In the case of some of the it is found that contributions due to three-body forces and two-body zero-point effects are often larger than the classical two-body contributions and differing in sign. The calculations of the C[ijk] have further shown that in a certain instance it is possible to distinguish between the contributions of the 3-body forces and the two-body zero-point effect, which is not possible in the case of the C[ij] A method is presented to calculate in a simple manner the contribution of the zero-point energy and the free-energy at finite teperatures to the elastic constants. In the case of the C[ij] where comparision with refined lattice dynamical method are available, good agreement is found. The method also enabled us to assess the many particle correlation effects.
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- 1978
8. Metallothionein suppresses collagen-induced arthritis via induction of TGF-β and down-regulation of proinflammatory mediators
- Author
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YOUN, J., HWANG, S.-H., RYOO, Z.-Y., LYNES, M. A., PAIK, D.-J., CHUNG, H.-S., and KIM, H.-Y.
- Published
- 2002
9. Corrigendum: Common variants at 19p13 are associated with susceptibility to ovarian cancer
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Bolton, KL, Tyrer, J, Song, H, Ramus, SJ, Notaridou, M, Jones, C, Sher, T, Gentry-Maharaj, A, Wozniak, E, Tsai, Y-Y, Weidhaas, J, Paik, D, Van Den Berg, DJ, Stram, DO, Pearce, CL, Wu, AH, Brewster, W, Anton-Culver, H, Ziogas, A, Narod, SA, Levine, DA, Kaye, SB, Brown, R, Paul, J, Flanagan, J, Sieh, W, McGuire, V, Whittemore, AS, Campbell, I, Gore, ME, Lissowska, J, Yang, HP, Medrek, K, Gronwald, J, Lubinski, J, Jakubowska, A, Le, ND, Cook, LS, Kelemen, LE, Brooks-Wilson, A, Massuger, LFAG, Kiemeney, LA, Aben, KKH, van Altena, AM, Houlston, R, Tomlinson, I, Palmieri, RT, Moorman, PG, Schildkraut, J, Iversen, ES, Phelan, C, Vierkant, RA, Cunningham, JM, Goode, EL, Fridley, BL, Kruger-Kjaer, S, Blaeker, J, Hogdall, E, Hogdall, C, Gross, J, Karlan, BY, Ness, RB, Edwards, RP, Odunsi, K, Moyisch, KB, Baker, JA, Modugno, F, Heikkinenen, T, Butzow, R, Nevanlinna, H, Leminen, A, Bogdanova, N, Antonenkova, N, Doerk, T, Hillemanns, P, Dürst, M, Runnebaum, I, Thompson, PJ, Carney, ME, Goodman, MT, Lurie, G, Wang-Gohrke, S, Hein, R, Chang-Claude, J, Rossing, MA, Cushing-Haugen, KL, Doherty, J, Chen, C, Rafnar, T, Besenbacher, S, Sulem, P, Stefansson, K, Birrer, MJ, Terry, KL, Hernandez, D, Cramer, DW, Vergote, I, Amant, F, Lambrechts, D, Despierre, E, Fasching, PA, Beckmann, MW, Thiel, FC, Ekici, AB, Chen, X, Australian Ovarian Cancer Study Group, Johnatty, SE, Webb, PM, Beesley, J, Chanock, S, Garcia-Closas, M, Sellers, T, Easton, DF, Berchuck, A, Chenevix-Trench, G, Pharoah, PDP, and Gayther, SA
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Australian Ovarian Cancer Study Group - Published
- 2016
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10. Improvement of surface texture on the hot dip galvanized and galvannealed steel sheets
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Hong, M.-H., Tark, H.-J., Park, J.-S., and Paik, D.-J.
- Abstract
Customers of hot dip galvanized and/or galvannealed steel sheets for automotive are more and moredemanding on high surface quality, paintability and press-formability. The roll texture for temper-rolling incontinuous galvanizing line should be very precisely treated to give a special roughness, which can betransferred to the Zn-coating surfaces during temper-rolling. Among the various texturing methods, in thepresent study, we adopted a newly developed TCT (TopoCrom Texturing) technology and both roll roughness(high/low Ra) and Cr structures (Open/Closed types) are tested. The products applying TCT had a uniformand dense roughness pattern and surface characteristics is also compared with the conventionally used EDT(electron discharge texturing) treatment. It should be noted that TCT technology on commercial galvannealingcoating surface is firstly used and the best condition was Ra=1.2 ?m with closed type; the roughness valuedecreases about 35% compared to the conventionally used EDT. On the other hand, in hot-dip galvanized steelsheets, the best condition was Ra=3.0 ?m with closed type. The friction coefficient was significantly improvedby the effect of the formation of oil pockets on the hot-dip galvanized steel sheet.
- Published
- 2013
11. Establishment of two cell lines from hamster buccal pouch tumors induced by topical 7,12-dimethylbenz(a)anthracene and topical DMBA in conjunction with herpes simplex virus infection
- Author
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Park, N. -H., Hudnall, S. D., Paik, D. I., and Stock, A. D.
- Published
- 1988
- Full Text
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12. Common variants at 19p13 are associated with susceptibility to ovarian cancer
- Author
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Bolton, KL, Tyrer, J, Song, H, Ramus, SJ, Notaridou, M, Jones, C, Sher, T, Gentry-Maharaj, A, Wozniak, E, Tsai, YY, Weidhaas, J, Paik, D, Van Den Berg, DJ, Stram, DO, Pearce, CL, Wu, AH, Brewster, W, Anton-Culver, H, Ziogas, A, Narod, SA, Levine, DA, Kaye, SB, Brown, R, Paul, J, Flanagan, J, Sieh, W, McGuire, V, Whittemore, AS, Campbell, I, Gore, ME, Lissowska, J, Yang, HP, Medrek, K, Gronwald, J, Lubinski, J, Jakubowska, A, Le, ND, Cook, LS, Kelemen, LE, Brook-Wilson, A, Massuger, LFAG, Kiemeney, LA, Aben, KKH, Van Altena, AM, Houlston, R, Tomlinson, I, Palmieri, RT, Moorman, PG, Schildkraut, J, Iversen, ES, Phelan, C, Vierkant, RA, Cunningham, JM, Goode, EL, Fridley, BL, Kruger-Kjaer, S, Blaeker, J, Hogdall, E, Hogdall, C, Gross, J, Karlan, BY, Ness, RB, Edwards, RP, Odunsi, K, Moyisch, KB, Baker, JA, Modugno, F, Heikkinenen, T, Butzow, R, Nevanlinna, H, Leminen, A, Bogdanova, N, Antonenkova, N, Doerk, T, Hillemanns, P, Dürst, M, Runnebaum, I, Thompson, PJ, Carney, ME, Goodman, MT, Lurie, G, Wang-Gohrke, S, Hein, R, Chang-Claude, J, Rossing, MA, Cushing-Haugen, KL, Doherty, J, Chen, C, Rafnar, T, Besenbacher, S, Sulem, P, Stefansson, K, Birrer, MJ, Terry, KL, Hernandez, D, Cramer, DW, and Vergote, I
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endocrine system diseases ,female genital diseases and pregnancy complications - Abstract
Epithelial ovarian cancer (EOC) is the leading cause of death from gynecological malignancy in the developed world, accounting for 4% of the deaths from cancer in women. We performed a three-phase genome-wide association study of EOC survival in 8,951 individuals with EOC (cases) with available survival time data and a parallel association analysis of EOC susceptibility. Two SNPs at 19p13.11, rs8170 and rs2363956, showed evidence of association with survival (overall P = 5×10-4and P = 6×10-4, respectively), but they did not replicate in phase 3. However, the same two SNPs demonstrated genome-wide significance for risk of serous EOC (P = 3×10-9and P = 4×10-11, respectively). Expression analysis of candidate genes at this locus in ovarian tumors supported a role for the BRCA1-interacting gene C19orf62, also known as MERIT40, which contains rs8170, in EOC development. © 2010 Nature America, Inc. All rights reserved.
- Published
- 2010
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13. Ultrastable measurement platform: sub-nm drift over hours in 3D at room temperature
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Walder, Robert, primary, Paik, D. Hern, additional, Bull, Matthew S., additional, Sauer, Carl, additional, and Perkins, Thomas T., additional
- Published
- 2015
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14. Cosmetic Preservatives as Therapeutic Corneal and Scleral Tissue Cross-Linking Agents
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Babar, N., primary, Kim, M., additional, Cao, K., additional, Shimizu, Y., additional, Kim, S.-Y., additional, Takaoka, A., additional, Trokel, S. L., additional, and Paik, D. C., additional
- Published
- 2015
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15. Ultrafast vectorial and scalar dynamics of ionic clusters: Azobenzene solvated by oxygen
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Paik, D. Hem, Baskin, J. Spencer, Kim, Nam Joon, and Zewail, Ahmed H.
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Caltech Library Services - Abstract
The ultrafast dynamics of clusters of trans-azobenzene anion (A–) solvated by oxygen molecules was investigated using femtosecond time-resolved photoelectron spectroscopy. The time scale for stripping off all oxygen molecules from A– was determined by monitoring in real time the transient of the A– rise, following an 800 nm excitation of A– (O2)n, where n=1–4. A careful analysis of the time-dependent photoelectron spectra strongly suggests that for n>1 a quasi-O4 core is formed and that the dissociation occurs by a bond cleavage between A– and conglomerated (O2)n rather than a stepwise evaporation of O2. With time and energy resolutions, we were able to capture the photoelectron signatures of transient species which instantaneously rise (2- for A–O2 and A·O4-·(O2)n–2 for A–(O2)n, where n=2–4. Subsequent to an ultrafast electron recombination, A– rises with two distinct time scales: a subpicosecond component reflecting a direct bond rupture of the A–-(O2)n nuclear coordinate and a slower component (1.6–36 ps, increasing with n) attributed to an indirect channel exhibiting a quasistatistical behavior. The photodetachment transients exhibit a change in the transition dipole direction as a function of time delay. Rotational dephasing occurs on a time scale of 2–3 ps, with a change in the sign of the transient anisotropy between A–O2 and the larger clusters. This behavior is a key indicator of an evolving cluster structure and is successfully modeled by calculations based on the structures and inertial motion of the parent clusters.
- Published
- 2006
16. An Ultrastable Measurement Platform for Single-Molecule Studies: Sub-NM Lateral Stability Over 1 hour using a Multiplexed Back-Scattered Detection
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Walder, Robert, primary, Paik, D. Hern, additional, Bull, Matthew S., additional, and Perkins, Thomas T., additional
- Published
- 2014
- Full Text
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17. Torsionally Constrained DNA for Single-Molecule Assays: An Efficient, Ligation-Free Method
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Paik, D. Hern, primary, Roskens, Violet A., additional, and Perkins, Thomas T., additional
- Published
- 2014
- Full Text
- View/download PDF
18. Common variants at 19p13 are associated with susceptibility to ovarian cancer.
- Author
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Bolton, K.L., Tyrer, J.P., Song, H., Ramus, S.J., Notaridou, M., Jones, C., Sher, T., Gentry-Maharaj, A., Wozniak, E., Tsai, Y.Y., Weidhaas, J., Paik, D., Berg, D.P.G. van den, Stram, D.O., Pearce, C.L., Wu, A.H., Brewster, W., Anton-Culver, H., Ziogas, A., Narod, S., Levine, D.A., Kaye, S.B., Brown, R., Paul, J., Flanagan, J., Sieh, W., McGuire, V., Whittemore, A.S., Campbell, I., Gore, M.E., Lissowska, J., Yang, H.P., Medrek, K., Gronwald, J., Lubinski, J., Jakubowska, A., Le, N.D., Cook, L.S., Keleman, L.E., Brook-Wilson, A., Massuger, L.F.A.G., Kiemeney, L.A.L.M., Aben, K.K.H., Altena, A.M. van, Houlston, R.S., Tomlinson, I., Palmieri, R.T., Moorman, P.G., Schildkraut, J., Iversen, E.S., Phelan, C.M., Vierkant, R.A., Cunningham, J.M., Goode, E.L., Fridley, B.L., Kruger-Kjaer, S., Blaeker, J., Hogdall, E., Hogdall, C., Gross, J., Karlan, B.Y., Ness, R.B., Edwards, R.P., Odunsi, K., Moyisch, K.B., Baker, J.A., Modugno, F., Heikkinenen, T., Butzow, R., Nevanlinna, H., Leminen, A., Bogdanova, N., Antonenkova, N., Doerk, T., Hillemanns, P., Durst, M., Runnebaum, I., Thompson, P.J., Carney, M.E., Goodman, M.T., Lurie, G., Wang-Gohrke, S., Hein, R., Chang-Claude, J., Rossing, M.A., Cushing-Haugen, K.L., Doherty, J., Chen, C., Rafnar, T., Besenbacher, S., Sulem, P., Stefansson, K., Birrer, M.J., Bolton, K.L., Tyrer, J.P., Song, H., Ramus, S.J., Notaridou, M., Jones, C., Sher, T., Gentry-Maharaj, A., Wozniak, E., Tsai, Y.Y., Weidhaas, J., Paik, D., Berg, D.P.G. van den, Stram, D.O., Pearce, C.L., Wu, A.H., Brewster, W., Anton-Culver, H., Ziogas, A., Narod, S., Levine, D.A., Kaye, S.B., Brown, R., Paul, J., Flanagan, J., Sieh, W., McGuire, V., Whittemore, A.S., Campbell, I., Gore, M.E., Lissowska, J., Yang, H.P., Medrek, K., Gronwald, J., Lubinski, J., Jakubowska, A., Le, N.D., Cook, L.S., Keleman, L.E., Brook-Wilson, A., Massuger, L.F.A.G., Kiemeney, L.A.L.M., Aben, K.K.H., Altena, A.M. van, Houlston, R.S., Tomlinson, I., Palmieri, R.T., Moorman, P.G., Schildkraut, J., Iversen, E.S., Phelan, C.M., Vierkant, R.A., Cunningham, J.M., Goode, E.L., Fridley, B.L., Kruger-Kjaer, S., Blaeker, J., Hogdall, E., Hogdall, C., Gross, J., Karlan, B.Y., Ness, R.B., Edwards, R.P., Odunsi, K., Moyisch, K.B., Baker, J.A., Modugno, F., Heikkinenen, T., Butzow, R., Nevanlinna, H., Leminen, A., Bogdanova, N., Antonenkova, N., Doerk, T., Hillemanns, P., Durst, M., Runnebaum, I., Thompson, P.J., Carney, M.E., Goodman, M.T., Lurie, G., Wang-Gohrke, S., Hein, R., Chang-Claude, J., Rossing, M.A., Cushing-Haugen, K.L., Doherty, J., Chen, C., Rafnar, T., Besenbacher, S., Sulem, P., Stefansson, K., and Birrer, M.J.
- Abstract
Contains fulltext : 89441.pdf (publisher's version ) (Closed access)
- Published
- 2010
19. Torsionally constrained DNA for single-molecule assays: an efficient, ligation-free method
- Author
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Paik, D. Hern, primary, Roskens, Violet A., additional, and Perkins, Thomas T., additional
- Published
- 2013
- Full Text
- View/download PDF
20. Bacillus subtilis-specific poly- -glutamic acid regulates development pathways of naive CD4+ T cells through antigen-presenting cell-dependent and -independent mechanisms
- Author
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Kim, S., primary, Yang, J. Y., additional, Lee, K., additional, Oh, K. H., additional, Gi, M., additional, Kim, J. M., additional, Paik, D. J., additional, Hong, S., additional, and Youn, J., additional
- Published
- 2009
- Full Text
- View/download PDF
21. Assessment of an Optical Flow Field-Based Polyp Detector for CT Colonography
- Author
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STANFORD UNIV PALO ALTO CA, Acar, B., Beaulieu, C. F., Paik, D. S., Goekturk, S. B., Tomasi, C., STANFORD UNIV PALO ALTO CA, Acar, B., Beaulieu, C. F., Paik, D. S., Goekturk, S. B., and Tomasi, C.
- Abstract
Most current computer-aided detection (CAD) algorithms for the fully automatic detection of colonic polyps from 3D CT data suffer from high false positive rates. We developed and evaluated a post-processing algorithm to decrease the false positive rate of such a method. Our method attempts to model the way a radiologist recognizes a polyp while scrolling a cross-sectional plane through 3D CT data by quantifying the change in location of the edges in 2D plane. It uses a classifier for identification base on the Mahalanobis distance. The new method increase the ROC curve area from 0.89 to 0.98 (an increase from 34.5% to 85.0% in specificity for 100% sensitivity) in a population of 8 patients., Presented at Annual International Conference of the IEEE Engineering in Medicine and Biology Society (23rd) held in Istanbul, Turkey on 25-28 Oct 2001. See also ADM001351 for entire conference on CD-ROM. The original document contains color images.
- Published
- 2001
22. Medial Axis Registration of Supine and Prone CT Colonography Data
- Author
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STANFORD UNIV PALO ALTO CA, Acar, B., Napel, S., Paik, D. S., Li, P., Yee, J., STANFORD UNIV PALO ALTO CA, Acar, B., Napel, S., Paik, D. S., Li, P., and Yee, J.
- Abstract
Computed Tomographic Colonography (CTC) is a minimally invasive method that allows the examination of the colon wall from the source CT sections or in a virtual environment. The primary goal of CTC is the detection of colonic polyps. There are typically two data sets recorded in supine and prone positions. An important step in polyp detection is the anatomical registration of these datasets. We developed and experimentally validated a method to register complementary supine and prone CTC datasets anatomically, using linear stretching/shrinking operations on the medial axis colonic path based on the relative path geometries. To compare improvement in spatial registration of supine and prone datasets, a radiologist determined 5 unique reference points (RP) in the registered and unregistered datasets from each of 5 patients by viewing supine and prone data simultaneously. Initial results suggest that our algorithm is capable of registering supine and prone CTC data anatomically within an approximate range of +/- 13.2mm, which corresponds to 0.8% error with respect to the average colon length., Presented at Annual International Conference of the IEEE Engineering in Medicine and Biology Society (23rd) held in Istanbul, Turkey on 25-28 Oct 2001. See also ADM001351 for entire conference on CD-ROM.
- Published
- 2001
23. A New 3-D Volume Processing Method for PolyP Detection
- Author
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STANFORD UNIV PALO ALTO CA, Gokturk, S. B., Thomasi, C., Acar, B., Paik, D., Beaulieu, C., STANFORD UNIV PALO ALTO CA, Gokturk, S. B., Thomasi, C., Acar, B., Paik, D., and Beaulieu, C.
- Abstract
Early diagnosis and removal of colonic polyps is effective in the elimination of subsequent carcinoma. This paper presents a new approach for computer-aided detection of polyps. The approach mimics the way the radiologists view CT abdomen images and utilizes several geometric attributes obtained from many triples of mutually orthogonal planes. The histogram of the attributes obtained from a sufficiently large number of perpendicular random images serves as a robust signature to represent the shape. We combine the new 3-D pattern recognition with a support vector machine classifier, and show that the number of the false positive detections in the initial polyp detection studies can be substantially reduced. One of the main contributions of this study is the thorough analysis of planar geometrical attributes. When an appropriate combination of planar attributes is used, the false positive rate is reduced by 87 percent beyond that of the initial stage detector, while maintaining a sensitivity level of 95 percent. Using such methods, radiologists should be able to view CTC data much more efficiently and accurately than without CAD., Papers from 23rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, October 25-28, 2001, held in Istanbul, Turkey. See also ADM001351 for entire conference on cd-rom., The original document contains color images.
- Published
- 2001
24. Histamine and Its Receptors Modulate Temperature-Preference Behaviors in Drosophila
- Author
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Hong, S.-T., primary, Bang, S., additional, Paik, D., additional, Kang, J., additional, Hwang, S., additional, Jeon, K., additional, Chun, B., additional, Hyun, S., additional, Lee, Y., additional, and Kim, J., additional
- Published
- 2006
- Full Text
- View/download PDF
25. Metallothionein suppresses collagen-induced arthritis via induction of TGF-βand down-regulation of proinflammatory mediators
- Author
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YOUN, J, primary, HWANG, S-H, additional, RYOO, Z-Y, additional, LYNES, M A, additional, PAIK, D-J, additional, CHUNG, H-S, additional, and KIM, H-Y, additional
- Published
- 2002
- Full Text
- View/download PDF
26. Deleting vertices to bound path length
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Paik, D., primary, Reddy, S., additional, and Sahni, S., additional
- Published
- 1994
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27. Optimal folding of bit sliced stacks
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Paik, D., primary and Sahni, S., additional
- Published
- 1993
- Full Text
- View/download PDF
28. Smokeless tobacco carcinogenesis: the role of viral and other factors.
- Author
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Park, N. -H., Akoto-Amanfu, E., and Paik, D. I.
- Published
- 1988
- Full Text
- View/download PDF
29. Corrigendum: An apoptosis-enhancing drug overcomes platinum resistance in a tumour-initiating subpopulation of ovarian cancer.
- Author
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Janzen, D. M., Tiourin, E., Salehi, J. A., Paik, D. Y., Lu, J., Pellegrini, M., and Memarzadeh, S.
- Published
- 2016
- Full Text
- View/download PDF
30. An apoptosis-enhancing drug overcomes platinum resistance in a tumour-initiating subpopulation of ovarian cancer.
- Author
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Janzen, D. M., Tiourin, E., Salehi, J. A., Paik, D. Y., Lu, J., Pellegrini, M., and Memarzadeh, S.
- Published
- 2015
- Full Text
- View/download PDF
31. The epidemiological enigma of gastric cancer rates in the US: was grandmother's sausage the cause?
- Author
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Paik, D C, Saborio, D V, Oropeza, R, and Freeman, H P
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- 2001
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32. Surface Optimization of Noble-Metal-Free Conductive [Mn 1/4 Co 1/2 Ni 1/4 ]O 2 Nanosheets for Boosting Their Efficacy as Hybridization Matrices.
- Author
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Kwon NH, Kim SJ, Gu TH, Lee JM, Kim MH, Paik D, Jin X, Kim H, and Hwang SJ
- Abstract
Conductive 2D nanosheets have evoked tremendous scientific efforts because of their high efficiency as hybridization matrices for improving diverse functionalities of nanostructured materials. To address the problems posed by previously reported conductive nanosheets like poorly-interacting graphene and cost-ineffective RuO
2 nanosheets, economically feasible noble-metal-free conductive [Mnx Co1-2x Nix ]O2 oxide nanosheets are synthesized with outstanding interfacial interaction capability. The surface-optimized [Mn1/4 Co1/2 Ni1/4 ]O2 nanosheets outperformed RuO2 /graphene nanosheets as hybridization matrices in exploring high-performance visible-light-active (λ >420 nm) photocatalysts. The most efficient g-C3 N4 -[Mn1/4 Co1/2 Ni1/4 ]O2 nanohybrid exhibited unusually high photocatalytic activity (NH4 + formation rate: 1.2 mmol g-1 h-1 ), i.e., one of the highest N2 reduction efficiencies. The outstanding hybridization effect of the defective [Mn1/4 Co1/2 Ni1/4 ]O2 nanosheets is attributed to the optimization of surface bonding character and electronic structure, allowing for improved interfacial coordination bonding with g-C3 N4 at the defect sites. Results from spectroscopic measurements and theoretical calculations reveal that hybridization helps optimize the bandgap energy, and improves charge separation, N2 adsorptivity, and surface reactivity. The universality of the [Mn1/4 Co1/2 Ni1/4 ]O2 nanosheet as versatile hybridization matrices is corroborated by the improvement in the electrocatalytic activity of hybridized Co-Fe-LDH as well as the photocatalytic hydrogen production ability of hybridized CdS., (© 2024 The Author(s). Advanced Science published by Wiley‐VCH GmbH.)- Published
- 2024
- Full Text
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33. Endoplasmic reticulum stress in the intestinal epithelium initiates purine metabolite synthesis and promotes Th17 cell differentiation in the gut.
- Author
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Duan J, Matute JD, Unger LW, Hanley T, Schnell A, Lin X, Krupka N, Griebel P, Lambden C, Sit B, Grootjans J, Pyzik M, Sommer F, Kaiser S, Falk-Paulsen M, Grasberger H, Kao JY, Fuhrer T, Li H, Paik D, Lee Y, Refetoff S, Glickman JN, Paton AW, Bry L, Paton JC, Sauer U, Macpherson AJ, Rosenstiel P, Kuchroo VK, Waldor MK, Huh JR, Kaser A, and Blumberg RS
- Subjects
- Cell Differentiation, Humans, Animals, Mice, Mice, Transgenic, Anti-Bacterial Agents pharmacology, Endoplasmic Reticulum Stress drug effects, Intestinal Mucosa drug effects, Intestinal Mucosa metabolism, Th17 Cells cytology, Th17 Cells metabolism
- Abstract
Intestinal IL-17-producing T helper (Th17) cells are dependent on adherent microbes in the gut for their development. However, how microbial adherence to intestinal epithelial cells (IECs) promotes Th17 cell differentiation remains enigmatic. Here, we found that Th17 cell-inducing gut bacteria generated an unfolded protein response (UPR) in IECs. Furthermore, subtilase cytotoxin expression or genetic removal of X-box binding protein 1 (Xbp1) in IECs caused a UPR and increased Th17 cells, even in antibiotic-treated or germ-free conditions. Mechanistically, UPR activation in IECs enhanced their production of both reactive oxygen species (ROS) and purine metabolites. Treating mice with N-acetyl-cysteine or allopurinol to reduce ROS production and xanthine, respectively, decreased Th17 cells that were associated with an elevated UPR. Th17-related genes also correlated with ER stress and the UPR in humans with inflammatory bowel disease. Overall, we identify a mechanism of intestinal Th17 cell differentiation that emerges from an IEC-associated UPR., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2023 Elsevier Inc. All rights reserved.)
- Published
- 2023
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34. Methotrexate suppresses psoriatic skin inflammation by inhibiting muropeptide transporter SLC46A2 activity.
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Bharadwaj R, Lusi CF, Mashayekh S, Nagar A, Subbarao M, Kane GI, Wodzanowski KA, Brown AR, Okuda K, Monahan A, Paik D, Nandy A, Anonick MV, Goldman WE, Kanneganti TD, Orzalli MH, Grimes CL, Atukorale PU, and Silverman N
- Subjects
- Mice, Animals, Inflammation, Peptidoglycan metabolism, Epithelial Cells metabolism, Nod1 Signaling Adaptor Protein metabolism, Nod2 Signaling Adaptor Protein metabolism, Immunity, Innate, Mammals, Methotrexate pharmacology, Dermatitis
- Abstract
Cytosolic innate immune sensing is critical for protecting barrier tissues. NOD1 and NOD2 are cytosolic sensors of small peptidoglycan fragments (muropeptides) derived from the bacterial cell wall. These muropeptides enter cells, especially epithelial cells, through unclear mechanisms. We previously implicated SLC46 transporters in muropeptide transport in Drosophila immunity. Here, we focused on Slc46a2, which was highly expressed in mammalian epidermal keratinocytes, and showed that it was critical for the delivery of diaminopimelic acid (DAP)-muropeptides and activation of NOD1 in keratinocytes, whereas the related transporter Slc46a3 was critical for delivering the NOD2 ligand MDP to keratinocytes. In a mouse model, Slc46a2 and Nod1 deficiency strongly suppressed psoriatic inflammation, whereas methotrexate, a commonly used psoriasis therapeutic, inhibited Slc46a2-dependent transport of DAP-muropeptides. Collectively, these studies define SLC46A2 as a transporter of NOD1-activating muropeptides, with critical roles in the skin barrier, and identify this transporter as an important target for anti-inflammatory intervention., Competing Interests: Declaration of interests A provisional patent on targeting SLC46s to inhibit inflammation in psoriasis and other auto-inflammatory diseases has been filed by some of the authors (N.S., R.B., and M.H.O.). T.-D.K. consults for Pfizer., (Copyright © 2023 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2023
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35. Age-related enhanced degeneration of bioprosthetic valves due to leaflet calcification, tissue crosslinking, and structural changes.
- Author
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Xue Y, Kossar AP, Abramov A, Frasca A, Sun M, Zyablitskaya M, Paik D, Kalfa D, Della Barbera M, Thiene G, Kozaki S, Kawashima T, Gorman JH, Gorman RC, Gillespie MJ, Carreon CK, Sanders SP, Levy RJ, and Ferrari G
- Subjects
- Animals, Rats, Sheep, Heart Valves, Biocompatible Materials, Collagen, Heart Valve Prosthesis, Bioprosthesis, Calcinosis
- Abstract
Aims: Bioprosthetic heart valves (BHVs), made from glutaraldehyde-fixed heterograft materials, are subject to more rapid structural valve degeneration (SVD) in paediatric and young adult patients. Differences in blood biochemistries and propensity for disease accelerate SVD in these patients, which results in multiple re-operations with compounding risks. The goal of this study is to investigate the mechanisms of BHV biomaterial degeneration and present models for studying SVD in young patients and juvenile animal models., Methods and Results: We studied SVD in clinical BHV explants from paediatric and young adult patients, juvenile sheep implantation model, rat subcutaneous implants, and an ex vivo serum incubation model. BHV biomaterials were analysed for calcification, collagen microstructure (alignment and crimp), and crosslinking density. Serum markers of calcification and tissue crosslinking were compared between young and adult subjects. We demonstrated that immature subjects were more susceptible to calcification, microstructural changes, and advanced glycation end products formation. In vivo and ex vivo studies comparing immature and mature subjects mirrored SVD in clinical observations. The interaction between host serum and BHV biomaterials leads to significant structural and biochemical changes which impact their functions., Conclusions: There is an increased risk for accelerated SVD in younger subjects, both experimental animals and patients. Increased calcification, altered collagen microstructure with loss of alignment and increased crimp periods, and increased crosslinking are three main characteristics in BHV explants from young subjects leading to SVD. Together, our studies establish a basis for assessing the increased susceptibility of BHV biomaterials to accelerated SVD in young patients., Competing Interests: Conflict of interest: The Authors declare that there is no conflict of interest., (© The Author(s) 2022. Published by Oxford University Press on behalf of the European Society of Cardiology. All rights reserved. For permissions, please email: journals.permissions@oup.com.)
- Published
- 2023
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36. Thermodynamics of π-π Interactions of Benzene and Phenol in Water.
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Paik D, Lee H, Kim H, and Choi JM
- Subjects
- Phenol chemistry, Thermodynamics, Water chemistry, Benzene chemistry, Intrinsically Disordered Proteins
- Abstract
The π-π interaction is a major driving force that stabilizes protein assemblies during protein folding. Recent studies have additionally demonstrated its involvement in the liquid-liquid phase separation (LLPS) of intrinsically disordered proteins (IDPs). As the participating residues in IDPs are exposed to water, π-π interactions for LLPS must be modeled in water, as opposed to the interactions that are often established at the hydrophobic domains of folded proteins. Thus, we investigated the association of free energies of benzene and phenol dimers in water by integrating van der Waals (vdW)-corrected density functional theory (DFT) and DFT in classical explicit solvents (DFT-CES). By comparing the vdW-corrected DFT and DFT-CES results with high-level wavefunction calculations and experimental solvation free energies, respectively, we established the quantitative credibility of these approaches, enabling a reliable prediction of the benzene and phenol dimer association free energies in water. We discovered that solvation influences dimer association free energies, but not significantly when no direct hydrogen-bond-type interaction exists between two monomeric units, which can be explained by the enthalpy-entropy compensation. Our comprehensive computational study of the solvation effect on π-π interactions in water could help us understand the molecular-level driving mechanism underlying the IDP phase behaviors.
- Published
- 2022
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37. Human gut bacteria produce Τ Η 17-modulating bile acid metabolites.
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Paik D, Yao L, Zhang Y, Bae S, D'Agostino GD, Zhang M, Kim E, Franzosa EA, Avila-Pacheco J, Bisanz JE, Rakowski CK, Vlamakis H, Xavier RJ, Turnbaugh PJ, Longman RS, Krout MR, Clish CB, Rastinejad F, Huttenhower C, Huh JR, and Devlin AS
- Subjects
- Cell Differentiation, Gastrointestinal Tract microbiology, Humans, Interleukin-17, Lithocholic Acid metabolism, Lithocholic Acid pharmacology, Th17 Cells, Bacteria metabolism, Bile Acids and Salts, Inflammatory Bowel Diseases metabolism, Inflammatory Bowel Diseases microbiology
- Abstract
The microbiota modulates gut immune homeostasis. Bacteria influence the development and function of host immune cells, including T helper cells expressing interleukin-17A (T
H 17 cells). We previously reported that the bile acid metabolite 3-oxolithocholic acid (3-oxoLCA) inhibits TH 17 cell differentiation1 . Although it was suggested that gut-residing bacteria produce 3-oxoLCA, the identity of such bacteria was unknown, and it was unclear whether 3-oxoLCA and other immunomodulatory bile acids are associated with inflammatory pathologies in humans. Here we identify human gut bacteria and corresponding enzymes that convert the secondary bile acid lithocholic acid into 3-oxoLCA as well as the abundant gut metabolite isolithocholic acid (isoLCA). Similar to 3-oxoLCA, isoLCA suppressed TH 17 cell differentiation by inhibiting retinoic acid receptor-related orphan nuclear receptor-γt, a key TH 17-cell-promoting transcription factor. The levels of both 3-oxoLCA and isoLCA and the 3α-hydroxysteroid dehydrogenase genes that are required for their biosynthesis were significantly reduced in patients with inflammatory bowel disease. Moreover, the levels of these bile acids were inversely correlated with the expression of TH 17-cell-associated genes. Overall, our data suggest that bacterially produced bile acids inhibit TH 17 cell function, an activity that may be relevant to the pathophysiology of inflammatory disorders such as inflammatory bowel disease., (© 2022. The Author(s), under exclusive licence to Springer Nature Limited.)- Published
- 2022
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38. Maternal gut bacteria drive intestinal inflammation in offspring with neurodevelopmental disorders by altering the chromatin landscape of CD4 + T cells.
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Kim E, Paik D, Ramirez RN, Biggs DG, Park Y, Kwon HK, Choi GB, and Huh JR
- Subjects
- Animals, Autism Spectrum Disorder microbiology, Child, Disease Models, Animal, Fecal Microbiota Transplantation, Female, Humans, Immunization, Inflammation microbiology, Mice, Neurodevelopmental Disorders microbiology, Pregnancy, Prenatal Exposure Delayed Effects microbiology, Autism Spectrum Disorder immunology, CD4-Positive T-Lymphocytes immunology, Chromatin metabolism, Gastrointestinal Microbiome immunology, Inflammation immunology, Interleukin-17 metabolism, Intestines immunology, Neurodevelopmental Disorders immunology, Prenatal Exposure Delayed Effects immunology
- Abstract
Children with autism spectrum disorders often display dysregulated immune responses and related gastrointestinal symptoms. However, the underlying mechanisms leading to the development of both phenotypes have not been elucidated. Here, we show that mouse offspring exhibiting autism-like phenotypes due to prenatal exposure to maternal inflammation were more susceptible to developing intestinal inflammation following challenges later in life. In contrast to its prenatal role in neurodevelopmental phenotypes, interleukin-17A (IL-17A) generated immune-primed phenotypes in offspring through changes in the maternal gut microbiota that led to postnatal alterations in the chromatin landscape of naive CD4
+ T cells. The transfer of stool samples from pregnant mice with enhanced IL-17A responses into germ-free dams produced immune-primed phenotypes in offspring. Our study provides mechanistic insights into why children exposed to heightened inflammation in the womb might have an increased risk of developing inflammatory diseases in addition to neurodevelopmental disorders., Competing Interests: Declaration of interests J.R.H. is a consultant for CJ Research Center, LLC, and is on the scientific advisory board for ChunLab., (Copyright © 2021 Elsevier Inc. All rights reserved.)- Published
- 2022
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39. A bacterial bile acid metabolite modulates T reg activity through the nuclear hormone receptor NR4A1.
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Li W, Hang S, Fang Y, Bae S, Zhang Y, Zhang M, Wang G, McCurry MD, Bae M, Paik D, Franzosa EA, Rastinejad F, Huttenhower C, Yao L, Devlin AS, and Huh JR
- Subjects
- Cell Differentiation physiology, Chromatin metabolism, Forkhead Transcription Factors genetics, Humans, Inflammatory Bowel Diseases pathology, Multigene Family genetics, Promoter Regions, Genetic genetics, Signal Transduction physiology, T-Lymphocyte Subsets cytology, T-Lymphocyte Subsets immunology, T-Lymphocytes, Regulatory cytology, Bacteroidetes metabolism, Bile Acids and Salts metabolism, Nuclear Receptor Subfamily 4, Group A, Member 1 metabolism, Phenanthrenes metabolism, T-Lymphocytes, Regulatory immunology
- Abstract
Bile acids act as signaling molecules that regulate immune homeostasis, including the differentiation of CD4
+ T cells into distinct T cell subsets. The bile acid metabolite isoallolithocholic acid (isoalloLCA) enhances the differentiation of anti-inflammatory regulatory T cells (Treg cells) by facilitating the formation of a permissive chromatin structure in the promoter region of the transcription factor forkhead box P3 (Foxp3). Here, we identify gut bacteria that synthesize isoalloLCA from 3-oxolithocholic acid and uncover a gene cluster responsible for the conversion in members of the abundant human gut bacterial phylum Bacteroidetes. We also show that the nuclear hormone receptor NR4A1 is required for the effect of isoalloLCA on Treg cells. Moreover, the levels of isoalloLCA and its biosynthetic genes are significantly reduced in patients with inflammatory bowel diseases, suggesting that isoalloLCA and its bacterial producers may play a critical role in maintaining immune homeostasis in humans., Competing Interests: Declaration of interests A.S.D. is a consultant for Takeda Pharmaceuticals and Axial Therapeutics. J.R.H. is a consultant for CJ Research Center and is on the scientific advisory board of ChunLab. C.H. is on the scientific advisory boards of Seres Therapeutics, Empress Therapeutics, and ZOE Nutrition., (Copyright © 2021 Elsevier Inc. All rights reserved.)- Published
- 2021
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40. A microbial metabolite remodels the gut-liver axis following bariatric surgery.
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Chaudhari SN, Luo JN, Harris DA, Aliakbarian H, Yao L, Paik D, Subramaniam R, Adhikari AA, Vernon AH, Kiliç A, Weiss ST, Huh JR, Sheu EG, and Devlin AS
- Subjects
- Animals, Diabetes Mellitus, Type 2, Gastrectomy, Germ-Free Life, Glucagon-Like Peptide 1, Hep G2 Cells, Humans, Ileum microbiology, Male, Mice, Mice, Inbred C57BL, Mice, Knockout, Receptors, Calcitriol genetics, Sulfotransferases metabolism, Bariatric Surgery, Gastrointestinal Microbiome physiology, Liver metabolism
- Abstract
Bariatric surgery is the most effective treatment for type 2 diabetes and is associated with changes in gut metabolites. Previous work uncovered a gut-restricted TGR5 agonist with anti-diabetic properties-cholic acid-7-sulfate (CA7S)-that is elevated following sleeve gastrectomy (SG). Here, we elucidate a microbiome-dependent pathway by which SG increases CA7S production. We show that a microbial metabolite, lithocholic acid (LCA), is increased in murine portal veins post-SG and by activating the vitamin D receptor, induces hepatic mSult2A1/hSULT2A expression to drive CA7S production. An SG-induced shift in the microbiome increases gut expression of the bile acid transporters Asbt and Ostα, which in turn facilitate selective transport of LCA across the gut epithelium. Cecal microbiota transplant from SG animals is sufficient to recreate the pathway in germ-free (GF) animals. Activation of this gut-liver pathway leads to CA7S synthesis and GLP-1 secretion, causally connecting a microbial metabolite with the improvement of diabetic phenotypes., Competing Interests: Declaration of interests CA7S is a subject of patents held by HMS and BWH on which S.N.C., D.A.H., E.G.S., and A.S.D. are inventors. A.S.D. is a consultant for Takeda Pharmaceuticals and HP Hood. E.G.S. is a consultant for Vicarious Surgical, Inc. and was previously on the scientific advisory board of Kitotech, Inc., (Copyright © 2020 Elsevier Inc. All rights reserved.)
- Published
- 2021
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41. Epidemiology and treatment status of hepatitis C virus infection among people who have ever injected drugs in Korea: a prospective multicenter cohort study from 2007 to 2019 in comparison with non-PWID.
- Author
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Kim KA, Choi GH, Jang ES, Kim YS, Lee YJ, Kim IH, Cho SB, Ki M, Choi HY, Paik D, and Jeong SH
- Subjects
- Antiviral Agents therapeutic use, Cohort Studies, Hepacivirus, Humans, Male, Prospective Studies, Hepatitis C epidemiology, Hepatitis C, Chronic drug therapy, Pharmaceutical Preparations, Substance Abuse, Intravenous drug therapy, Substance Abuse, Intravenous epidemiology
- Abstract
Objectives: Injection drug use is a major risk factor for hepatitis C virus (HCV) infection; however, limited data on this topic are available in Korea. Thus, this study aimed to investigate the epidemiological and clinical characteristics, treatment uptake, and outcomes of HCV infection among people who inject drugs (PWID)., Methods: We used the data from the Korea HCV cohort, which prospectively enrolled patients with HCV infection between 2007 and 2019. Clinical data and results of a questionnaire survey on lifetime risk factors for HCV infection were analyzed according to a self-reported history of injection drug use (PWID vs. non-PWID group)., Results: Among the 2,468 patients, 166 (6.7%) were in the PWID group, which contained younger patients (50.6±8.2 vs. 58.2±13.1 years) and a higher proportion of male (81.9 vs. 48.8%) than the non-PWID group. The distribution of PWID showed significant regional variations. Exposure to other risk factors for HCV infection was different between the groups. The proportion of patients with genotype non-2 infection was higher in the PWID group. Treatment uptake was higher in the PWID group in the interferon era; however, it was comparable between the groups in the direct-acting antiviral era. The rate of sustained virological response did not significantly differ between the groups., Conclusions: As of 2019, PWID constituted a minority of HCV-infected people in Korea. The epidemiological characteristics, but not treatment uptake and outcomes, were different between the PWID and non-PWID groups. Therefore, active HCV screening and treatment should be offered to PWID in Korea.
- Published
- 2021
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42. Author Correction: Bile acid metabolites control T H 17 and T reg cell differentiation.
- Author
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Hang S, Paik D, Yao L, Kim E, Trinath J, Lu J, Ha S, Nelson BN, Kelly SP, Wu L, Zheng Y, Longman RS, Rastinejad F, Devlin AS, Krout MR, Fischbach MA, Littman DR, and Huh JR
- Abstract
An Amendment to this paper has been published and can be accessed via a link at the top of the paper.
- Published
- 2020
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43. The Kinase IKKβ Regulates a STING-and NF-κB-Dependent Antiviral Response Pathway in Drosophila.
- Author
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Goto A, Okado K, Martins N, Cai H, Barbier V, Lamiable O, Troxler L, Santiago E, Kuhn L, Paik D, Silverman N, Holleufer A, Hartmann R, Liu J, Peng T, Hoffmann JA, Meignin C, Daeffler L, and Imler JL
- Published
- 2020
- Full Text
- View/download PDF
44. Gut-Innervating Nociceptor Neurons Regulate Peyer's Patch Microfold Cells and SFB Levels to Mediate Salmonella Host Defense.
- Author
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Lai NY, Musser MA, Pinho-Ribeiro FA, Baral P, Jacobson A, Ma P, Potts DE, Chen Z, Paik D, Soualhi S, Yan Y, Misra A, Goldstein K, Lagomarsino VN, Nordstrom A, Sivanathan KN, Wallrapp A, Kuchroo VK, Nowarski R, Starnbach MN, Shi H, Surana NK, An D, Wu C, Huh JR, Rao M, and Chiu IM
- Subjects
- Animals, Epithelium metabolism, Female, Ganglia, Spinal metabolism, Ganglia, Spinal microbiology, Intestinal Mucosa microbiology, Male, Mice, Mice, Inbred C57BL, Nociceptors metabolism, Peyer's Patches innervation, Peyer's Patches metabolism, Salmonella Infections metabolism, Salmonella typhimurium metabolism, Salmonella typhimurium pathogenicity, Sensory Receptor Cells metabolism, Sensory Receptor Cells physiology, Gastrointestinal Microbiome physiology, Host Microbial Interactions physiology, Nociceptors physiology
- Abstract
Gut-innervating nociceptor sensory neurons respond to noxious stimuli by initiating protective responses including pain and inflammation; however, their role in enteric infections is unclear. Here, we find that nociceptor neurons critically mediate host defense against the bacterial pathogen Salmonella enterica serovar Typhimurium (STm). Dorsal root ganglia nociceptors protect against STm colonization, invasion, and dissemination from the gut. Nociceptors regulate the density of microfold (M) cells in ileum Peyer's patch (PP) follicle-associated epithelia (FAE) to limit entry points for STm invasion. Downstream of M cells, nociceptors maintain levels of segmentous filamentous bacteria (SFB), a gut microbe residing on ileum villi and PP FAE that mediates resistance to STm infection. TRPV1+ nociceptors directly respond to STm by releasing calcitonin gene-related peptide (CGRP), a neuropeptide that modulates M cells and SFB levels to protect against Salmonella infection. These findings reveal a major role for nociceptor neurons in sensing and defending against enteric pathogens., (Copyright © 2019 Elsevier Inc. All rights reserved.)
- Published
- 2020
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45. Bile acid metabolites control T H 17 and T reg cell differentiation.
- Author
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Hang S, Paik D, Yao L, Kim E, Trinath J, Lu J, Ha S, Nelson BN, Kelly SP, Wu L, Zheng Y, Longman RS, Rastinejad F, Devlin AS, Krout MR, Fischbach MA, Littman DR, and Huh JR
- Subjects
- Animals, Forkhead Transcription Factors genetics, Forkhead Transcription Factors immunology, Lithocholic Acid chemistry, Mice, Mice, Inbred C57BL, Reactive Oxygen Species metabolism, T-Lymphocytes, Regulatory cytology, T-Lymphocytes, Regulatory immunology, T-Lymphocytes, Regulatory metabolism, Th17 Cells cytology, Th17 Cells immunology, Th17 Cells metabolism, Cell Differentiation drug effects, Lithocholic Acid pharmacology, T-Lymphocytes, Regulatory drug effects, Th17 Cells drug effects
- Abstract
Bile acids are abundant in the mammalian gut, where they undergo bacteria-mediated transformation to generate a large pool of bioactive molecules. Although bile acids are known to affect host metabolism, cancer progression and innate immunity, it is unknown whether they affect adaptive immune cells such as T helper cells that express IL-17a (T
H 17 cells) or regulatory T cells (Treg cells). Here we screen a library of bile acid metabolites and identify two distinct derivatives of lithocholic acid (LCA), 3-oxoLCA and isoalloLCA, as T cell regulators in mice. 3-OxoLCA inhibited the differentiation of TH 17 cells by directly binding to the key transcription factor retinoid-related orphan receptor-γt (RORγt) and isoalloLCA increased the differentiation of Treg cells through the production of mitochondrial reactive oxygen species (mitoROS), which led to increased expression of FOXP3. The isoalloLCA-mediated enhancement of Treg cell differentiation required an intronic Foxp3 enhancer, the conserved noncoding sequence (CNS) 3; this represents a mode of action distinct from that of previously identified metabolites that increase Treg cell differentiation, which require CNS1. The administration of 3-oxoLCA and isoalloLCA to mice reduced TH 17 cell differentiation and increased Treg cell differentiation, respectively, in the intestinal lamina propria. Our data suggest mechanisms through which bile acid metabolites control host immune responses, by directly modulating the balance of TH 17 and Treg cells.- Published
- 2019
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46. Serine protease inhibitors rich Coccinia grandis (L.) Voigt leaf extract induces protective immune responses in murine visceral leishmaniasis.
- Author
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Pramanik A, Paik D, Pramanik PK, and Chakraborti T
- Subjects
- Animals, Female, Immunity, Cellular physiology, Immunity, Humoral drug effects, Immunity, Humoral physiology, Leishmaniasis, Visceral metabolism, Mice, Mice, Inbred BALB C, Plant Extracts isolation & purification, Plant Extracts pharmacology, Plant Leaves, Serine Proteinase Inhibitors isolation & purification, Serine Proteinase Inhibitors pharmacology, Cucurbitaceae, Immunity, Cellular drug effects, Leishmaniasis, Visceral drug therapy, Leishmaniasis, Visceral immunology, Plant Extracts therapeutic use, Serine Proteinase Inhibitors therapeutic use
- Abstract
Leishmaniasis is a parasite-mediated tropical disease affecting millions of individuals worldwide. The available antileishmanial chemotherapeutic modalities exhibit adverse toxicity, exorbitant price and advent of drug-resistant parasites. Hence, plant-derived products are an alternative preference for the emergence of novel and effective antileishmanial agents that rejuvenate the host immunity with limited toxicity. The present work is complementary to our previous report that revealed the in vitro antileishmanial and immunomodulatory activity of Coccinia grandis (L.) Voigt leaf extract (Cg-Ex) rich in serine protease inhibitors. Thus, preliminary objectives of the study were to elucidate the leishmanicidal activity and host effector mechanism in Leishmania donovani infected BALB/c mice treated with Cg-Ex. Oral administration of Cg-Ex significantly reduced the spleen and liver parasite burden at dose-dependently. The parasite elimination was associated with generation of ROS and NO that are interrelated with up-regulation of disease-suppressing Th1 cytokines and down-regulation of disease-promoting Th2 cytokines at both protein and mRNA level. Moreover, Cg-Ex augmented the delayed-type hypersensitivity (DTH) response and serum IgG2a level which are correlated with the diminution of parasite burden with no hepatic and renal toxicity. Additionally, histological analysis of spleen depicted the improvement of structural disorganization of white and red pulp after Cg-Ex treatment. Therefore, our intriguing findings have presented the first indication of in vivo antileishmanial efficacy through activation of pro-inflammatory immune responses of the host by a natural plant leaf extract (Cg-Ex) containing serine protease inhibitors which could have a role as a potential immunomodulator against visceral leishmaniasis., (Copyright © 2018 Elsevier Masson SAS. All rights reserved.)
- Published
- 2019
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47. Machine learning to predict lung nodule biopsy method using CT image features: A pilot study.
- Author
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Sumathipala Y, Shafiq M, Bongen E, Brinton C, and Paik D
- Subjects
- Humans, Imaging, Three-Dimensional, Lung Neoplasms diagnostic imaging, Pilot Projects, Predictive Value of Tests, Solitary Pulmonary Nodule diagnostic imaging, Biopsy methods, Lung Neoplasms pathology, Machine Learning, Radiographic Image Interpretation, Computer-Assisted methods, Solitary Pulmonary Nodule pathology, Tomography, X-Ray Computed
- Abstract
Computed tomography (CT)-based screening on lung cancer mortality is poised to make lung nodule management a growing public health problem. Biopsy and pathologic analysis of suspicious nodules is necessary to ensure accurate diagnosis and appropriate intervention. Biopsy techniques vary as do the specialists that perform them and the ways lung nodule patients are referred and triaged. The largest dichotomy is between minimally invasive biopsy (MIB) and surgical biopsy (SB). Cases of unsuccessful MIB preceding a SB can result in considerable delay in definitive care with potentially an adverse impact on prognosis besides potentially avoidable healthcare expenditures. An automated method that predicts the optimal biopsy method for a given lung nodule could save time and healthcare costs by facilitating referral and triage patterns. To our knowledge, no such method has been published. Here, we used CT image features and radiologist-annotated semantic features to predict successful MIB in a way that has not been described before. Using data from the Lung Image Database Consortium image collection (LIDC-IDRI), we trained a logistic regression model to determine whether a MIB or SB procedure was used to diagnose lung cancer in a patient presenting with lung nodules. We found that in successful MIB cases, the nodules were significantly larger and more spiculated. Our model illustrates that using robust machine learning tools on easily accessible semantic and image data can predict whether a patient's nodule is best biopsied by MIB or SB. Pending further validation and optimization, clinicians could use our publicly accessible model to aid clinical decision-making., (Copyright © 2018 Elsevier Ltd. All rights reserved.)
- Published
- 2019
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48. The Kinase IKKβ Regulates a STING- and NF-κB-Dependent Antiviral Response Pathway in Drosophila.
- Author
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Goto A, Okado K, Martins N, Cai H, Barbier V, Lamiable O, Troxler L, Santiago E, Kuhn L, Paik D, Silverman N, Holleufer A, Hartmann R, Liu J, Peng T, Hoffmann JA, Meignin C, Daeffler L, and Imler JL
- Subjects
- Animals, Cell Line, Dicistroviridae immunology, Drosophila Proteins genetics, I-kappa B Kinase genetics, Membrane Proteins genetics, Peptide Initiation Factors genetics, RNA Interference, Transcription Factors metabolism, Drosophila Proteins metabolism, Drosophila melanogaster immunology, Drosophila melanogaster virology, I-kappa B Kinase metabolism, Membrane Proteins metabolism, Peptide Initiation Factors metabolism, Picornaviridae Infections immunology
- Abstract
Antiviral immunity in Drosophila involves RNA interference and poorly characterized inducible responses. Here, we showed that two components of the IMD pathway, the kinase dIKKβ and the transcription factor Relish, were required to control infection by two picorna-like viruses. We identified a set of genes induced by viral infection and regulated by dIKKβ and Relish, which included an ortholog of STING. We showed that dSTING participated in the control of infection by picorna-like viruses, acting upstream of dIKKβ to regulate expression of Nazo, an antiviral factor. Our data reveal an antiviral function for STING in an animal model devoid of interferons and suggest an evolutionarily ancient role for this molecule in antiviral immunity., (Copyright © 2018 Elsevier Inc. All rights reserved.)
- Published
- 2018
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49. Leishmania donovani serine protease encapsulated in liposome elicits protective immunity in experimental visceral leishmaniasis.
- Author
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Das P, Paik D, Naskar K, and Chakraborti T
- Subjects
- Adjuvants, Immunologic administration & dosage, Animals, Antibodies, Protozoan blood, Antigens, Protozoan administration & dosage, Antigens, Protozoan immunology, Cricetinae, Cytokines immunology, Female, Leishmania donovani enzymology, Leishmaniasis Vaccines administration & dosage, Leishmaniasis, Visceral immunology, Liposomes administration & dosage, Mice, Mice, Inbred BALB C, Parasite Load, Protozoan Proteins administration & dosage, Protozoan Proteins immunology, Serine Proteases administration & dosage, Th1 Cells immunology, Vaccination, Disease Models, Animal, Immunogenicity, Vaccine immunology, Leishmania donovani immunology, Leishmaniasis Vaccines immunology, Leishmaniasis, Visceral prevention & control, Liposomes immunology, Serine Proteases immunology
- Abstract
This study is aimed to evaluate the protective effect of L. donovani intracellular serine protease (SP-Ld) in combination with Freund's adjuvant and liposomal formulations against experimental visceral leishmaniasis (VL). The animals were immunized with SP-Ld in combination with adjuvant and evaluated for its immunogenicity and protective efficacy against Leishmania donovani. The infection was initially assessed by microscopic examination. Immunogenicity of SP-Ld was measured by detecting protease specific-IgG, IgG1 and IgG2a levels by ELISA. Cytokines levels were measured by ELISA and Reverse Transcription Polymerase Chain Reaction (RT-PCR). The vaccine efficacy of SP-Ld was also evaluated by measuring antibody response and survival potency in hamster model. SP-Ld vaccinated Balb/c mice resulted significant reduction of parasite burden with increased levels of IgG2a and decreased levels of IgG1. SP-Ld vaccination also induced Th1 type immune response with the rise of IL-12, IFN-γ and TNF-α with decreased levels of IL-10 and TGF-β. Importantly, liposomal incorporated SP-Ld exerted better protection rather than in combination with Freund's adjuvant. Additionally, liposome encapsulated SP-Ld vaccinated hamsters continued to survive beyond 8 months against virulent L. donovani post challenge. Overall, these findings demonstrated SP-Ld as an effective immunogen which opens a new perspective for the generation of potential vaccine candidate against leishmaniasis., (Copyright © 2017 Institut Pasteur. Published by Elsevier Masson SAS. All rights reserved.)
- Published
- 2018
- Full Text
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50. Measurement Accuracy of Atherosclerotic Plaque Structure on CT Using Phantoms to Establish Ground Truth.
- Author
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St Pierre S, Siegelman J, Obuchowski NA, Ma X, Paik D, and Buckler AJ
- Subjects
- Computed Tomography Angiography methods, Humans, Reproducibility of Results, Software, Computed Tomography Angiography instrumentation, Phantoms, Imaging, Plaque, Atherosclerotic diagnostic imaging
- Abstract
Rationale and Objectives: The purpose of this study was to characterize analytic performance of software-aided arterial vessel structure measurements across a range of scanner settings for computed tomography angiography where ground truth is known. We characterized performance for measurands that may be efficiently measured for clinical cases without use of software, as well as those that may be done manually but which is generally not done due to the effort level required unless software is employed., Materials and Methods: Four measurands (lumen area, stenosis, wall area, wall thickness) were evaluated using tissue-mimicking phantoms to estimate bias, heteroscedasticity, and limits of quantitation both pooled across scanner settings and individually for eight different settings. Reproducibility across scanner settings was also estimated., Results: Measurements of lumen area have a near constant bias of +1.3 mm for measurements ranging from 3 mm
2 to 40 mm2 ; stenosis bias is +7% across a 30%-70% range; wall area bias is +14% across a 50-450 mm2 range; and wall thickness bias is +1.2 mm across a 3-9 mm range. All measurements possess properties that make them suitable for measuring longitudinal change. Lumen area demonstrates the most sensitivity to scanner settings (bias from as low as +.1 mm to as high as +2.7 mm); wall thickness demonstrates negligible sensitivity., Conclusions: Variability across scanner settings for lumen measurands was generally higher than bias for a given setting. The converse was true for the wall measurands, where variability due to scanner settings was very low. Both bias and variability due to scanner settings of vessel structure were within clinically useful levels., (Copyright © 2017 The Association of University Radiologists. Published by Elsevier Inc. All rights reserved.)- Published
- 2017
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