203 results on '"Ossadtchi A"'
Search Results
2. Representational dissimilarity component analysis (ReDisCA)
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Alexei Ossadtchi, Ilia Semenkov, Anna Zhuravleva, Vladimir Kozunov, Oleg Serikov, and Ekaterina Voloshina
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EEG and MEG ,Spatial–temporal decomposition ,Representational similarity analysis ,Source localization ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
The principle of Representational Similarity Analysis (RSA) posits that neural representations reflect the structure of encoded information, allowing exploration of spatial and temporal organization of brain information processing. Traditional RSA when applied to EEG or MEG data faces challenges in accessing activation time series at the brain source level due to modeling complexities and insufficient geometric/anatomical data.To overcome this, we introduce Representational Dissimilarity Component Analysis (ReDisCA), a method for estimating spatial–temporal components in EEG or MEG responses aligned with a target representational dissimilarity matrix (RDM). ReDisCA yields informative spatial filters and associated topographies, offering insights into the location of ”representationally relevant” sources. Applied to evoked response time series, ReDisCA produces temporal source activation profiles with the desired RDM. Importantly, while ReDisCA does not require inverse modeling its output is consistent with EEG and MEG observation equation and can be used as an input to rigorous source localization procedures.Demonstrating ReDisCA’s efficacy through simulations and comparison with conventional methods, we show superior source localization accuracy and apply the method to real EEG and MEG datasets, revealing physiologically plausible representational structures without inverse modeling. ReDisCA adds to the family of inverse modeling free methods such as independent component analysis (Makeig, 1995), Spatial spectral decomposition (Nikulin, 2011), and Source power comodulation (Dähne, 2014) designed for extraction sources with desired properties from EEG or MEG data. Extending its utility beyond EEG and MEG analysis, ReDisCA is likely to find application in fMRI data analysis and exploration of representational structures emerging in multilayered artificial neural networks.
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- 2024
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3. fMRI from EEG is only Deep Learning away: the use of interpretable DL to unravel EEG-fMRI relationships
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Kovalev, Alexander, Mikheev, Ilia, and Ossadtchi, Alexei
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Physics - Medical Physics ,Computer Science - Artificial Intelligence ,Computer Science - Machine Learning ,Quantitative Biology - Neurons and Cognition - Abstract
The access to activity of subcortical structures offers unique opportunity for building intention dependent brain-computer interfaces, renders abundant options for exploring a broad range of cognitive phenomena in the realm of affective neuroscience including complex decision making processes and the eternal free-will dilemma and facilitates diagnostics of a range of neurological deceases. So far this was possible only using bulky, expensive and immobile fMRI equipment. Here we present an interpretable domain grounded solution to recover the activity of several subcortical regions from the multichannel EEG data and demonstrate up to 60% correlation between the actual subcortical blood oxygenation level dependent sBOLD signal and its EEG-derived twin. Then, using the novel and theoretically justified weight interpretation methodology we recover individual spatial and time-frequency patterns of scalp EEG predictive of the hemodynamic signal in the subcortical nuclei. The described results not only pave the road towards wearable subcortical activity scanners but also showcase an automatic knowledge discovery process facilitated by deep learning technology in combination with an interpretable domain constrained architecture and the appropriate downstream task., Comment: 11 pages. Add acknowledgment
- Published
- 2022
4. Short-term meditation training alters brain activity and sympathetic responses at rest, but not during meditation
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Anna Rusinova, Maria Volodina, and Alexei Ossadtchi
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Medicine ,Science - Abstract
Abstract Although more people are engaging in meditation practices that require specialized training, few studies address the issues associated with nervous activity pattern changes brought about by such training. For beginners, it remains unclear how much practice is needed before objective physiological changes can be detected, whether or not they are similar across the novices and what are the optimal strategies to track these changes. To clarify these questions we recruited individuals with no prior meditation experience. The experimental group underwent an eight-week Taoist meditation course administered by a professional, while the control group listened to audiobooks. Both groups participated in audio-guided, 34-min long meditation sessions before and after the 8-week long intervention. Their EEG, photoplethysmogram, respiration, and skin conductance were recorded during the mediation and resting state periods. Compared to the control group, the experimental group exhibited band-specific topically organized changes of the resting state brain activity and heart rate variability associated with sympathetic system activation. Importantly, no significant changes were found during the meditation process prior and post the 8-week training in either of the groups. The absence of notable changes in CNS and ANS activity indicators during meditation sessions, for both the experimental and control groups, casts doubt on the effectiveness of wearable biofeedback devices in meditation practice. This finding redirects focus to the importance of monitoring resting state activity to evaluate progress in beginner meditators. Also, 16 h of training is not enough for forming individual objectively different strategies manifested during the meditation sessions. Our results contributed to the development of tools to objectively monitor the progress in novice meditators and the choice of the relevant monitoring strategies. According to our findings, in order to track early changes brought about by the meditation practice it is preferable to monitor brain activity outside the actual meditation sessions.
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- 2024
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5. The effects of reactive and proactive motor decision-making strategies on the hand kinematics features in post-stroke patients
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Alexey V. Tumyalis, Timur B. Ivanov, Galina E. Ivanova, Ekaterina A. Ivanova, Andrey A. Kirichenko, and Alex E. Ossadtchi
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stroke ,muscle spasticity ,abnormal movement ,decision making ,Medicine - Abstract
BACKGROUND: Motor disorders of the upper limbs often develop after stroke. The use of traditional meth-ods to restore the motor functions of the upper limbs has limited effectiveness thus making the search and development of new rehabilitation approaches important. We propose to use a proactive selection of a purposeful movement as such an approach. AIM: to investi-gate the influence of different strategies of the upper limb movement regulation on the mo-tor decision making and hand kinematics parameters in stroke patients. METHODS: Ten pa-tients with stroke participated in the study during their hospital stay. They were divided into 2 groups and performed the task of selecting a movement target and performing arm movements for 10 sessions of 10 minutes each. The sessions were performed on separate days. When performing the task, patients selected one of the targets, either the near target or the distant one. The groups differed in the type of presentation of the distant target; the near target was stationary. The stimuli were presented on a touch screen arranged hori-zontally. A patient sat in front of the screen and placed the hand with a foam ball fixed in it on the starting area. The patient’s forearm was supported by means of a pendant. The pa-tient selected a target to reach in each attempt and then performed the movement by swip-ing the ball on the touch screen. The frequency of the target selection to perform the movement, the range of the selected target, the latencies of the movement onset, the hand speed and acceleration, and the accuracy in reaching the target were assessed. RESULTS: The results indicate that amidst the overall effects represented by a reduced movement on-set time [F (9.72)=8.59; p 0.001], a greater movement speed in reaching the distant tar-get [F (9.72)=2.79; p=0.007], a lower selection rate [F (9.72)=2.78; p=0.008] and a re-duced mean distance of the selected distant target [F (9.72)=2.19; p=0.033], the differ-ences in the distant target presentation between the groups have an impact on the hand movement dynamics in patients. Presenting a target at a random distance results in a greater selected target distance [F (1.8)=17.04; p=0.003], and an increased hand speed [F (9.72)=3.03; p=0.004] compared to the adaptive presentation. There is also a greater decrease in the movement onset time [F (9.72)=2.71; p=0.009] in the group of patients with the adaptive presentation of the distant target compared to the group with the random presentation. CONCLUSION: The differences in the target presentation strategy are reflected in the motor decision making and hand movement dynamics of stroke patients. A random-ized range of target presentation results in a higher amplitude arm movement closer to the activation threshold of the stretch reflex. The results of the study may be useful for selecting the rehabilitation strategies for stroke patients.
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- 2024
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6. Representational dissimilarity component analysis (ReDisCA)
- Author
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Ossadtchi, Alexei, Semenkov, Ilia, Zhuravleva, Anna, Kozunov, Vladimir, Serikov, Oleg, and Voloshina, Ekaterina
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- 2024
- Full Text
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7. PSIICOS projection optimality for EEG and MEG based functional coupling detection
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Altukhov, Dmitrii, Kleeva, Daria, and Ossadtchi, Alexei
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- 2023
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8. PSIICOS projection optimality for EEG and MEG based functional coupling detection
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Dmitrii Altukhov, Daria Kleeva, and Alexei Ossadtchi
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MEG ,EEG ,Connectivity ,Dynamic networks ,Cross-spectrum ,Spatial leakage ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Functional connectivity is crucial for cognitive processes in the healthy brain and serves as a marker for a range of neuropathological conditions. Non-invasive exploration of functional coupling using temporally resolved techniques such as MEG allows for a unique opportunity of exploring this fundamental brain mechanism.The indirect nature of MEG measurements complicates the estimation of functional coupling due to the volume conduction and spatial leakage effects. In the previous work (Ossadtchi et al., 2018), we introduced PSIICOS, a method that for the first time allowed us to suppress the volume conduction effect and yet retain information about functional networks whose nodes are coupled with close to zero or zero mutual phase lag.In this paper, we demonstrate analytically that the PSIICOS projection is optimal in achieving a controllable trade-off between suppressing mutual spatial leakage and retaining information about zero- or close to zero-phase coupled networks. We also derive an alternative solution using the regularization-based inverse of the mutual spatial leakage matrix and show its equivalence to the original PSIICOS.We then discuss how PSIICOS solution to the functional connectivity estimation problem can be incorporated into the conventional source estimation framework. Instead of sources, the unknowns are the elementary dyadic networks and their activation time series are formalized by the corresponding source-space cross-spectral coefficients. This view on connectivity estimation as a regression problem opens up new opportunities for formulating a set of principled estimators based on the rich intuition accumulated in the neuroimaging community.
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- 2023
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9. Consensus on the reporting and experimental design of clinical and cognitive-behavioural neurofeedback studies (CRED-nf checklist).
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Paret, Christian, Ossadtchi, Alexei, Nicholson, Andrew, Nan, Wenya, Minguez, Javier, Micoulaud-Franchi, Jean-Arthur, Mehler, David, Lührs, Michael, Lubar, Joel, Lotte, Fabien, Linden, David, Lewis-Peacock, Jarrod, Lebedev, Mikhail, Lanius, Ruth, Kübler, Andrea, Kranczioch, Cornelia, Koush, Yury, Konicar, Lilian, Kohl, Simon, Kober, Silivia, Klados, Manousos, Jeunet, Camille, Janssen, T, Huster, Rene, Hoedlmoser, Kerstin, Hirshberg, Laurence, Heunis, Stephan, Hendler, Talma, Hampson, Michelle, Guggisberg, Adrian, Guggenberger, Robert, Gruzelier, John, Göbel, Rainer, Gninenko, Nicolas, Gharabaghi, Alireza, Frewen, Paul, Fovet, Thomas, Fernández, Thalía, Escolano, Carlos, Ehlis, Ann-Christine, Drechsler, Renate, Christopher deCharms, R, Debener, Stefan, De Ridder, Dirk, Davelaar, Eddy, Congedo, Marco, Cavazza, Marc, Breteler, Marinus, Brandeis, Daniel, Bodurka, Jerzy, Birbaumer, Niels, Bazanova, Olga, Barth, Beatrix, Bamidis, Panagiotis, Auer, Tibor, Arns, Martijn, Thibault, Robert, Ros, Tomas, Enriquez-Geppert, Stefanie, Zotev, Vadim, Young, Kymberly, Wood, Guilherme, Whitfield-Gabrieli, Susan, Wan, Feng, Vuilleumier, Patrik, Vialatte, François, Van De Ville, Dimitri, Todder, Doron, Surmeli, Tanju, Sulzer, James, Strehl, Ute, Sterman, Maurice, Steiner, Naomi, Sorger, Bettina, Soekadar, Surjo, Sitaram, Ranganatha, Sherlin, Leslie, Schönenberg, Michael, Scharnowski, Frank, Schabus, Manuel, Rubia, Katya, Rosa, Agostinho, Reiner, Miriam, and Pineda, Jaime
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checklist ,consensus ,guidelines ,neurofeedback ,regulation ,Adult ,Checklist ,Consensus ,Female ,Humans ,Male ,Middle Aged ,Neurofeedback ,Peer Review ,Research ,Research Design ,Stakeholder Participation - Abstract
Neurofeedback has begun to attract the attention and scrutiny of the scientific and medical mainstream. Here, neurofeedback researchers present a consensus-derived checklist that aims to improve the reporting and experimental design standards in the field.
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- 2020
10. Consensus on the reporting and experimental design of clinical and cognitive-behavioural neurofeedback studies (CRED-nf checklist)
- Author
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Ros, Tomas, Enriquez-Geppert, Stefanie, Zotev, Vadim, Young, Kymberly D, Wood, Guilherme, Whitfield-Gabrieli, Susan, Wan, Feng, Vuilleumier, Patrik, Vialatte, François, Van De Ville, Dimitri, Todder, Doron, Surmeli, Tanju, Sulzer, James S, Strehl, Ute, Sterman, Maurice Barry, Steiner, Naomi J, Sorger, Bettina, Soekadar, Surjo R, Sitaram, Ranganatha, Sherlin, Leslie H, Schönenberg, Michael, Scharnowski, Frank, Schabus, Manuel, Rubia, Katya, Rosa, Agostinho, Reiner, Miriam, Pineda, Jaime A, Paret, Christian, Ossadtchi, Alexei, Nicholson, Andrew A, Nan, Wenya, Minguez, Javier, Micoulaud-Franchi, Jean-Arthur, Mehler, David MA, Lührs, Michael, Lubar, Joel, Lotte, Fabien, Linden, David EJ, Lewis-Peacock, Jarrod A, Lebedev, Mikhail A, Lanius, Ruth A, Kübler, Andrea, Kranczioch, Cornelia, Koush, Yury, Konicar, Lilian, Kohl, Simon H, Kober, Silivia E, Klados, Manousos A, Jeunet, Camille, Janssen, TWP, Huster, Rene J, Hoedlmoser, Kerstin, Hirshberg, Laurence M, Heunis, Stephan, Hendler, Talma, Hampson, Michelle, Guggisberg, Adrian G, Guggenberger, Robert, Gruzelier, John H, Göbel, Rainer W, Gninenko, Nicolas, Gharabaghi, Alireza, Frewen, Paul, Fovet, Thomas, Fernández, Thalía, Escolano, Carlos, Ehlis, Ann-Christine, Drechsler, Renate, deCharms, R Christopher, Debener, Stefan, De Ridder, Dirk, Davelaar, Eddy J, Congedo, Marco, Cavazza, Marc, Breteler, Marinus HM, Brandeis, Daniel, Bodurka, Jerzy, Birbaumer, Niels, Bazanova, Olga M, Barth, Beatrix, Bamidis, Panagiotis D, Auer, Tibor, Arns, Martijn, and Thibault, Robert T
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Mind and Body ,Adult ,Checklist ,Consensus ,Female ,Humans ,Male ,Middle Aged ,Neurofeedback ,Peer Review ,Research ,Research Design ,Stakeholder Participation ,neurofeedback ,regulation ,consensus ,checklist ,guidelines ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Neurology & Neurosurgery - Abstract
Neurofeedback has begun to attract the attention and scrutiny of the scientific and medical mainstream. Here, neurofeedback researchers present a consensus-derived checklist that aims to improve the reporting and experimental design standards in the field.
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- 2020
11. Influence of reactive and proactive motor decision strategies on hand kinematic characteristics in stroke patients
- Author
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Tumyalis, Alexey, primary, Ivanov, Timur, additional, Ivanova, Galina, additional, Ivanova, Ekaterina, additional, Kirichenko, Andrey, additional, and Ossadtchi, Alexey, additional
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- 2024
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12. Modified covariance beamformer for solving MEG inverse problem in the environment with correlated sources
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Kuznetsova, Aleksandra, Nurislamova, Yulia, and Ossadtchi, Alexei
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- 2021
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13. MEG signatures of long-term effects of agreement and disagreement with the majority
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A. Gorin, V. Klucharev, A. Ossadtchi, I. Zubarev, V. Moiseeva, and A. Shestakova
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Medicine ,Science - Abstract
Abstract People often change their beliefs by succumbing to an opinion of others. Such changes are often referred to as effects of social influence. While some previous studies have focused on the reinforcement learning mechanisms of social influence or on its internalization, others have reported evidence of changes in sensory processing evoked by social influence of peer groups. In this study, we used magnetoencephalographic (MEG) source imaging to further investigate the long-term effects of agreement and disagreement with the peer group. The study was composed of two sessions. During the first session, participants rated the trustworthiness of faces and subsequently learned group rating of each face. In the first session, a neural marker of an immediate mismatch between individual and group opinions was found in the posterior cingulate cortex, an area involved in conflict-monitoring and reinforcement learning. To identify the neural correlates of the long-lasting effect of the group opinion, we analysed MEG activity while participants rated faces during the second session. We found MEG traces of past disagreement or agreement with the peers at the parietal cortices 230 ms after the face onset. The neural activity of the superior parietal lobule, intraparietal sulcus, and precuneus was significantly stronger when the participant’s rating had previously differed from the ratings of the peers. The early MEG correlates of disagreement with the majority were followed by activity in the orbitofrontal cortex 320 ms after the face onset. Altogether, the results reveal the temporal dynamics of the neural mechanism of long-term effects of disagreement with the peer group: early signatures of modified face processing were followed by later markers of long-term social influence on the valuation process at the ventromedial prefrontal cortex.
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- 2021
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14. Comparison of cross-frequency methods such as cross-term deprived covariance (CTDC) and bispectrum
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Skiteva, Lyudmila, Ushakov, Vadim, and Ossadtchi, Alexey
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- 2020
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15. Data-driven approach for the delineation of the irritative zone in epilepsy in MEG
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Valerii Chirkov, Anna Kryuchkova, Alexandra Koptelova, Tatiana Stroganova, Alexandra Kuznetsova, Daria Kleeva, Alexei Ossadtchi, and Tommaso Fedele
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Medicine ,Science - Abstract
The reliable identification of the irritative zone (IZ) is a prerequisite for the correct clinical evaluation of medically refractory patients affected by epilepsy. Given the complexity of MEG data, visual analysis of epileptiform neurophysiological activity is highly time consuming and might leave clinically relevant information undetected. We recorded and analyzed the interictal activity from seven patients affected by epilepsy (Vectorview Neuromag), who successfully underwent epilepsy surgery (Engel > = II). We visually marked and localized characteristic epileptiform activity (VIS). We implemented a two-stage pipeline for the detection of interictal spikes and the delineation of the IZ. First, we detected candidate events from peaky ICA components, and then clustered events around spatio-temporal patterns identified by convolutional sparse coding. We used the average of clustered events to create IZ maps computed at the amplitude peak (PEAK), and at the 50% of the peak ascending slope (SLOPE). We validated our approach by computing the distance of the estimated IZ (VIS, SLOPE and PEAK) from the border of the surgically resected area (RA). We identified 25 spatiotemporal patterns mimicking the underlying interictal activity (3.6 clusters/patient). Each cluster was populated on average by 22.1 [15.0–31.0] spikes. The predicted IZ maps had an average distance from the resection margin of 8.4 ± 9.3 mm for visual analysis, 12.0 ± 16.5 mm for SLOPE and 22.7 ±. 16.4 mm for PEAK. The consideration of the source spread at the ascending slope provided an IZ closer to RA and resembled the analysis of an expert observer. We validated here the performance of a data-driven approach for the automated detection of interictal spikes and delineation of the IZ. This computational framework provides the basis for reproducible and bias-free analysis of MEG recordings in epilepsy.
- Published
- 2022
16. MEG signatures of long-term effects of agreement and disagreement with the majority
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Gorin, A., Klucharev, V., Ossadtchi, A., Zubarev, I., Moiseeva, V., and Shestakova, A.
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- 2021
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17. Author Correction: MEG signatures of long-term effects of agreement and disagreement with the majority
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Gorin, A., Klucharev, V., Ossadtchi, A., Zubarev, I., Moiseeva, V., and Shestakova, A.
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- 2021
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18. Brain-Controlled Biometric Signals Employed to Operate External Technical Devices
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Mironov, Vasily I., Lobov, Sergey A., Kastalskiy, Innokentiy A., Gordleeva, Susanna Y., Pimashkin, Alexey S., Krilova, Nadezhda P., Volkova, Kseniya V., Ossadtchi, Alexey E., Kazantsev, Victor B., Anisimov, K. V., editor, Dub, A. V., editor, Kolpakov, S. K., editor, Lisitsa, A. V., editor, Petrov, A. N., editor, Polukarov, V. P., editor, Popel, O. S., editor, and Vinokurov, V. A., editor
- Published
- 2018
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19. Modified covariance beamformer for solving MEG inverse problem in the environment with correlated sources
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Aleksandra Kuznetsova, Yulia Nurislamova, and Alexei Ossadtchi
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MEG ,Inverse problem ,Beamforming ,Synchronous sources ,Correlated sources ,Data covariance ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Magnetoencephalography (MEG) is a neuroimaging method ideally suited for non-invasive studies of brain dynamics. MEG’s spatial resolution critically depends on the approach used to solve the ill-posed inverse problem in order to transform sensor signals into cortical activation maps. Over recent years non-globally optimized solutions based on the use of adaptive beamformers (BF) gained popularity.When operating in the environment with a small number of uncorrelated sources the BFs perform optimally and yield high spatial resolution. However, the BFs are known to fail when dealing with correlated sources acting like poorly tuned spatial filters with low signal-to-noise ratio (SNR) of the output timeseries and often meaningless cortical maps of power distribution.This fact poses a serious limitation on the broader use of this promising technique especially since fundamental mechanisms of brain functioning, its inherent symmetry and task-based experimental paradigms result into a great deal of correlation in the activity of cortical sources. To cope with this problem, we developed a novel data covariance modification approach that allows for building beamformers that maintain high spatial resolution when operating in the environments with correlated sources.At the core of our method is a projection operation applied to the vectorized sensor-space covariance matrix. This projection does not remove the activity of the correlated sources from the sensor-space covariance matrix but rather selectively handles their contributions to the covariance matrix and creates a sufficiently accurate approximation of an ideal data covariance that could hypothetically be observed should these sources be uncorrelated. Since the projection operation is reciprocal to the PSIICOS method developed by us earlier (Ossadtchi et al., 2018) we refer to the family of algorithms presented here as ReciPSIICOS.We assess the performance of the novel approach using realistically simulated MEG data and show its superior performance in comparison to the classical BF approaches and well established MNE as a method immune to source synchrony by design. We have also applied our approach to the MEG datasets from the two experiments involving two different auditory tasks.The analysis of experimental MEG datasets showed that beamformers from ReciPSIICOS family, but not the classical BF, discovered the expected bilateral focal sources in the primary auditory cortex and detected motor cortex activity associated with the audio-motor task. In most cases MNE managed well but as expected produced more spatially diffuse source distributions. Notably, ReciPSIICOS beamformers yielded cortical activity estimates with SNR several times higher than that obtained with the classical BF, which may indirectly indicate the severeness of the signal cancellation problem when applying classical beamformers to MEG signals generated by synchronous sources.
- Published
- 2021
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20. Cortical and autonomic responses during staged Taoist meditation: Two distinct meditation strategies.
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Maria Volodina, Nikolai Smetanin, Mikhail Lebedev, and Alexei Ossadtchi
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Medicine ,Science - Abstract
Meditation is a consciousness state associated with specific physiological and neural correlates. Numerous investigations of these correlates reported controversial results which prevented a consistent depiction of the underlying neurophysiological processes. Here we investigated the dynamics of multiple neurophysiological indicators during a staged meditation session. We measured the physiological changes at rest and during the guided Taoist meditation in experienced meditators and naive subjects. We recorded EEG, respiration, galvanic skin response, and photoplethysmography. All subjects followed the same instructions split into 16 stages. In the experienced meditators group we identified two subgroups with different physiological markers dynamics. One subgroup showed several signs of general relaxation evident from the changes in heart rate variability, respiratory rate, and EEG rhythmic activity. The other subgroup exhibited mind concentration patterns primarily noticeable in the EEG recordings while no autonomic responses occurred. The duration and type of previous meditation experience or any baseline indicators we measured did not explain the segregation of the meditators into these two groups. These results suggest that two distinct meditation strategies could be used by experienced meditators, which partly explains the inconsistent results reported in the earlier studies evaluating meditation effects. Our findings are also relevant to the development of the high-end biofeedback systems.
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- 2021
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21. A P300 Brain-Computer Interface With a Reduced Visual Field
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Luiza Kirasirova, Vladimir Bulanov, Alexei Ossadtchi, Alexander Kolsanov, Vasily Pyatin, and Mikhail Lebedev
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P300 BCI ,aperture ,central vision ,ERP ,visual fatigue ,visual attention ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
A P300 brain-computer interface (BCI) is a paradigm, where text characters are decoded from event-related potentials (ERPs). In a popular implementation, called P300 speller, a subject looks at a display where characters are flashing and selects one character by attending to it. The selection is recognized as the item with the strongest ERP. The speller performs well when cortical responses to target and non-target stimuli are sufficiently different. Although many strategies have been proposed for improving the BCI spelling, a relatively simple one received insufficient attention in the literature: reduction of the visual field to diminish the contribution from non-target stimuli. Previously, this idea was implemented in a single-stimulus switch that issued an urgent command like stopping a robot. To tackle this approach further, we ran a pilot experiment where ten subjects operated a traditional P300 speller or wore a binocular aperture that confined their sight to the central visual field. As intended, visual field restriction resulted in a replacement of non-target ERPs with EEG rhythms asynchronous to stimulus periodicity. Changes in target ERPs were found in half of the subjects and were individually variable. While classification accuracy was slightly better for the aperture condition (84.3 ± 2.9%, mean ± standard error) than the no-aperture condition (81.0 ± 2.6%), this difference was not statistically significant for the entire sample of subjects (N = 10). For both the aperture and no-aperture conditions, classification accuracy improved over 4 days of training, more so for the aperture condition (from 72.0 ± 6.3% to 87.0 ± 3.9% and from 72.0 ± 5.6% to 97.0 ± 2.2% for the no-aperture and aperture conditions, respectively). Although in this study BCI performance was not substantially altered, we suggest that with further refinement this approach could speed up BCI operations and reduce user fatigue. Additionally, instead of wearing an aperture, non-targets could be removed algorithmically or with a hybrid interface that utilizes an eye tracker. We further discuss how a P300 speller could be improved by taking advantage of the different physiological properties of the central and peripheral vision. Finally, we suggest that the proposed experimental approach could be used in basic research on the mechanisms of visual processing.
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- 2020
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22. Decoding Movement From Electrocorticographic Activity: A Review
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Ksenia Volkova, Mikhail A. Lebedev, Alexander Kaplan, and Alexei Ossadtchi
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electrocorticography ,ECoG ,brain-computer interface ,BCI ,movement decoding ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Electrocorticography (ECoG) holds promise to provide efficient neuroprosthetic solutions for people suffering from neurological disabilities. This recording technique combines adequate temporal and spatial resolution with the lower risks of medical complications compared to the other invasive methods. ECoG is routinely used in clinical practice for preoperative cortical mapping in epileptic patients. During the last two decades, research utilizing ECoG has considerably grown, including the paradigms where behaviorally relevant information is extracted from ECoG activity with decoding algorithms of different complexity. Several research groups have advanced toward the development of assistive devices driven by brain-computer interfaces (BCIs) that decode motor commands from multichannel ECoG recordings. Here we review the evolution of this field and its recent tendencies, and discuss the potential areas for future development.
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- 2019
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23. Analysis of neuronal ensemble activity reveals the pitfalls and shortcomings of rotation dynamics
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Lebedev, Mikhail A., Ossadtchi, Alexei, Mill, Nil Adell, Urpí, Núria Armengol, Cervera, Maria R., and Nicolelis, Miguel A. L.
- Published
- 2019
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24. Gene expression tomography.
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Brown, Vanessa M, Ossadtchi, Alex, Khan, Arshad H, Gambhir, Sanjiv S, Cherry, Simon R, Leahy, Richard M, and Smith, Desmond J
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Cell Line ,Animals ,Mice ,Inbred C57BL ,Mice ,Ribonucleases ,Tyrosine 3-Monooxygenase ,RNA ,Tomography ,Emission-Computed ,Tomography ,X-Ray Computed ,Brain Mapping ,Gene Expression Profiling ,Reverse Transcriptase Polymerase Chain Reaction ,Image Processing ,Computer-Assisted ,Male ,brain mapping ,genomics ,real-time quantitative reverse transcription polymerase chain reaction ,ribonuclease protection ,tomographic image reconstruction ,Biochemistry & Molecular Biology ,Medical Physiology - Abstract
Gene expression tomography, or GET, is a new method to increase the speed of three-dimensional (3-D) gene expression analysis in the brain. The name is evocative of the method's dual foundations in high-throughput gene expression analysis and computerized tomographic image reconstruction, familiar from techniques such as positron emission tomography (PET) and X-ray computerized tomography (CT). In GET, brain slices are taken using a cryostat in conjunction with axial rotation about independent axes to create a series of "views" of the brain. Gene expression information obtained from the axially rotated views can then be used to recreate 3-D gene expression patterns. GET was used to successfully reconstruct images of tyrosine hydroxylase gene expression in the mouse brain, using both RNase protection and real-time quantitative reverse transcription PCR (QRT-PCR). A Monte-Carlo analysis confirmed the good quality of the GET image reconstruction. By speeding acquisition of gene expression patterns, GET may help improve our understanding of the genomics of the brain in both health and disease.
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- 2002
25. Neurofeedback learning modifies the incidence rate of alpha spindles, but not their duration and amplitude
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Alexei Ossadtchi, Tatiana Shamaeva, Elizaveta Okorokova, Victoria Moiseeva, and Mikhail A. Lebedev
- Subjects
Medicine ,Science - Abstract
Abstract Although the first experiments on alpha-neurofeedback date back nearly six decades ago, when Joseph Kamiya reported successful operant conditioning of alpha-rhythm in humans, the effectiveness of this paradigm in various experimental and clinical settings is still a matter of debate. Here, we investigated the changes in EEG patterns during a continuously administered neurofeedback of P4 alpha activity. Two days of neurofeedback training were sufficient for a significant increase in the alpha power to occur. A detailed analysis of these EEG changes showed that the alpha power rose because of an increase in the incidence rate of alpha episodes, whereas the amplitude and the duration of alpha oscillations remained unchanged. These findings suggest that neurofeedback facilitates volitional control of alpha activity onset, but alpha episodes themselves appear to be maintained automatically with no volitional control – a property overlooked by previous studies that employed continuous alpha-power neurofeedback. We propose that future research on alpha neurofeedback should explore reinforcement schedules based on detection of onsets and offsets of alpha waves, and employ these statistics for exploration and quantification of neurofeedback induced effects.
- Published
- 2017
- Full Text
- View/download PDF
26. NFBLab—A Versatile Software for Neurofeedback and Brain-Computer Interface Research
- Author
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Nikolai Smetanin, Ksenia Volkova, Stanislav Zabodaev, Mikhail A. Lebedev, and Alexei Ossadtchi
- Subjects
neurofeedback ,low-latency ,software ,real-time EEG ,brain-computer interface ,flexible experiment design ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Neurofeedback (NFB) is a real-time paradigm, where subjects learn to volitionally modulate their own brain activity recorded with electroencephalographic (EEG), magnetoencephalographic (MEG) or other functional brain imaging techniques and presented to them via one of sensory modalities: visual, auditory or tactile. NFB has been proposed as an approach to treat neurological conditions and augment brain functions. Although the early NFB studies date back nearly six decades ago, there is still much debate regarding the efficiency of this approach and the ways it should be implemented. Partly, the existing controversy is due to suboptimal conditions under which the NFB training is undertaken. Therefore, new experimental tools attempting to provide optimal or close to optimal training conditions are needed to further exploration of NFB paradigms and comparison of their effects across subjects and training days. To this end, we have developed open-source NFBLab, a versatile, Python-based software for conducting NFB experiments with completely reproducible paradigms and low-latency feedback presentation. Complex experimental protocols can be configured using the GUI and saved in NFBLab's internal XML-based language that describes signal processing tracts, experimental blocks and sequences including randomization of experimental blocks. NFBLab implements interactive modules that enable individualized EEG/MEG signal processing tracts specification using spatial and temporal filters for feature selection and artifacts removal. NFBLab supports direct interfacing to MNE-Python software to facilitate source-space NFB based on individual head models and properly tailored individual inverse solvers. In addition to the standard algorithms for extraction of brain rhythms dynamics from EEG and MEG data, NFBLab implements several novel in-house signal processing algorithms that afford significant reduction in latency of feedback presentation and may potentially improve training effects. The software also supports several standard BCI paradigms. To interface with external data acquisition devices NFBLab employs Lab Streaming Layer protocol supported by the majority of EEG vendors. MEG devices are interfaced through the Fieldtrip buffer.
- Published
- 2018
- Full Text
- View/download PDF
27. Author Correction: MEG signatures of long-term effects of agreement and disagreement with the majority
- Author
-
A. Gorin, V. Klucharev, A. Ossadtchi, I. Zubarev, V. Moiseeva, and A. Shestakova
- Subjects
Medicine ,Science - Abstract
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
- Published
- 2021
- Full Text
- View/download PDF
28. Navigation Patterns and Scent Marking: Underappreciated Contributors to Hippocampal and Entorhinal Spatial Representations?
- Author
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Mikhail A. Lebedev, Alexey Pimashkin, and Alexei Ossadtchi
- Subjects
navigation behavior ,hippocampal formation ,grid cells ,head direction cells ,chicken or egg dilemma ,scent marking ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
According to the currently prevailing theory, hippocampal formation constructs and maintains cognitive spatial maps. Most of the experimental evidence for this theory comes from the studies on navigation in laboratory rats and mice, typically male animals. While these animals exhibit a rich repertoire of behaviors associated with navigation, including locomotion, head movements, whisking, sniffing, raring and scent marking, the contribution of these behavioral patterns to the hippocampal spatially-selective activity has not been sufficiently studied. Instead, many publications have considered animal position in space as the major variable that affects the firing of hippocampal place cells and entorhinal grid cells. Here we argue that future work should focus on a more detailed examination of different behaviors exhibited during navigation to better understand the mechanism of spatial tuning in hippocampal neurons. As an inquiry in this direction, we have analyzed data from two datasets, shared online, containing recordings from rats navigating in square and round arenas. Our analyses revealed patchy navigation patterns, evident from the spatial maps of animal position, velocity and acceleration. Moreover, grid cells available in the datasets exhibited similar periodicity as the navigation parameters. These findings indicate that activity of grid cells could affect navigation parameters and/or vice versa. Additionally, we speculate that scent marks left by navigating animals could contribute to neuronal responses while rats and mice sniff their environment; the act of sniffing could modulate neuronal discharges even in virtual visual environments. Accordingly, we propose that future experiments should contain additional controls for navigation patterns, whisking, sniffing and maps composed of scent marks.
- Published
- 2018
- Full Text
- View/download PDF
29. Commentary: Spatial Olfactory Learning Contributes to Place Field Formation in the Hippocampus
- Author
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Mikhail A. Lebedev and Alexei Ossadtchi
- Subjects
olfactory response ,hippocampus ,place cells ,place cell remapping ,scent marking ,navigation ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Published
- 2018
- Full Text
- View/download PDF
30. Commentary: Injecting Instructions into Premotor Cortex
- Author
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Mikhail A. Lebedev and Alexei Ossadtchi
- Subjects
intracortical microstimulation ,premotor cortex ,monkey ,hebbian learning ,hebbian plasticity ,neural prostheses ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Published
- 2018
- Full Text
- View/download PDF
31. Testing the efforts model of simultaneous interpreting: An ERP study.
- Author
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Roman Koshkin, Yury Shtyrov, Andriy Myachykov, and Alex Ossadtchi
- Subjects
Medicine ,Science - Abstract
We utilized the event-related potential (ERP) technique to study neural activity associated with different levels of working memory (WM) load during simultaneous interpretation (SI) of continuous prose. The amplitude of N1 and P1 components elicited by task-irrelevant tone probes was significantly modulated as a function of WM load but not the direction of interpretation. Furthermore, the latency of the P1 increased significantly with WM load. The WM load effect on N1 latency, however, did not reach significance. Larger negativity under lower WM loads suggests that more attention is available to process the source message, providing the first electrophysiological evidence in support of the Efforts Model of SI. Relationships between the direction of interpretation and median WM load are also discussed.
- Published
- 2018
- Full Text
- View/download PDF
32. Data-driven approach for the delineation of the irritative zone in epilepsy in MEG
- Author
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Chirkov, Valerii, primary, Kryuchkova, Anna, additional, Koptelova, Alexandra, additional, Stroganova, Tatiana, additional, Kuznetsova, Alexandra, additional, Kleeva, Daria, additional, Ossadtchi, Alexei, additional, and Fedele, Tommaso, additional
- Published
- 2022
- Full Text
- View/download PDF
33. Comparison of cross-frequency methods such as cross-term deprived covariance (CTDC) and bispectrum
- Author
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Vadim L. Ushakov, Lyudmila I. Skiteva, and Alexey Ossadtchi
- Subjects
Artificial neural network ,Series (mathematics) ,Computer science ,business.industry ,020206 networking & telecommunications ,Pattern recognition ,02 engineering and technology ,Covariance ,0202 electrical engineering, electronic engineering, information engineering ,General Earth and Planetary Sciences ,Coherence (signal processing) ,020201 artificial intelligence & image processing ,Artificial intelligence ,business ,Bispectrum ,General Environmental Science ,Coherence (physics) - Abstract
Cross-frequency coupling (CFC) is typical for the operation of neural networks from different areas of the brain. This, for example, can be characterized by “рacemaker” neurons activity, the structure of these part’s crust, etc. Thus, the highest interest is not the correlation of those areas, but the synchronous activity of the areas in time at different frequencies. Event-related events can induce the work of neurons, but each at its own frequency. It looks like a synchronous manifestation of activity at different points in time, with a lag, but appearing at different frequencies. Correlation methods and coherence for CFC detection are not suitable, since they are for monofrequencies, and a long time series is required. The connectedness of neurons ensemble’s work in time is effectively considered by methods such as bispectrum and CTDC. In this work, we compared these two methods as well as their hybrid. According to the results, the CTDC method proved to be more accurate, both in spatial localization and in inter-frequency.
- Published
- 2020
34. Cortical and autonomic responses during staged Taoist meditation: Two distinct meditation strategies
- Author
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Volodina, Maria, primary, Smetanin, Nikolai, additional, Lebedev, Mikhail, additional, and Ossadtchi, Alexei, additional
- Published
- 2021
- Full Text
- View/download PDF
35. Cortical and autonomic responses during staged Taoist meditation: Two distinct meditation strategies
- Author
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Mikhail A. Lebedev, Maria A. Volodina, Alexei Ossadtchi, and Nikolai Smetanin
- Subjects
Central Nervous System ,Vertebrae ,Physiology ,medicine.medical_treatment ,Electroencephalography ,Audiology ,Nervous System ,Heart Rate ,Medicine and Health Sciences ,Heart rate variability ,Meditation ,Musculoskeletal System ,media_common ,Clinical Neurophysiology ,Brain Mapping ,Multidisciplinary ,medicine.diagnostic_test ,Relaxation (psychology) ,Respiration ,Galvanic Skin Response ,Electrophysiology ,Signal Filtering ,Bioassays and Physiological Analysis ,Brain Electrophysiology ,Breathing ,Medicine ,Engineering and Technology ,Anatomy ,Psychology ,Research Article ,Adult ,medicine.medical_specialty ,Respiratory rate ,Imaging Techniques ,media_common.quotation_subject ,Science ,Cardiology ,Neurophysiology ,Neuroimaging ,Biofeedback ,Autonomic Nervous System ,Research and Analysis Methods ,Young Adult ,Rhythm ,medicine ,Humans ,Skeleton ,Neural correlates of consciousness ,Electrophysiological Techniques ,Biology and Life Sciences ,Butterworth Filters ,Spine ,Bandpass Filters ,Signal Processing ,Clinical Medicine ,Physiological Processes ,Neuroscience - Abstract
Meditation is a consciousness state associated with specific physiological and neural correlates. Numerous investigations of these correlates reported controversial results which prevented a consistent depiction of the underlying neurophysiological processes. Here we investigated the dynamics of multiple neurophysiological indicators during a staged meditation session. We measured the physiological changes at rest and during the guided Taoist meditation in experienced meditators and naive subjects. We recorded EEG, respiration, galvanic skin response, and photoplethysmography. All subjects followed the same instructions split into 16 stages. In the experienced meditators group we identified two subgroups with different physiological markers dynamics. One subgroup showed several signs of general relaxation evident from the changes in heart rate variability, respiratory rate, and EEG rhythmic activity. The other subgroup exhibited mind concentration patterns primarily noticeable in the EEG recordings while no autonomic responses occurred. The duration and type of previous meditation experience or any baseline indicators we measured did not explain the segregation of the meditators into these two groups. These results suggest that two distinct meditation strategies could be used by experienced meditators, which partly explains the inconsistent results reported in the earlier studies evaluating meditation effects. Our findings are also relevant to the development of the high-end biofeedback systems.
- Published
- 2021
36. Evolution of MEG: A first MEG-feasible fluxgate magnetometer
- Author
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Maxim Ostras, Nikolay Koshev, Petr Vetoshko, Maxim V. Fedorov, Alexei Ossadtchi, A. N. Kuzmichev, Ekaterina Skidchenko, and Anna Butorina
- Subjects
Physics ,Adult ,Cerebral Cortex ,Radiological and Ultrasound Technology ,medicine.diagnostic_test ,Magnetometer ,Acoustics ,Magnetometry ,Magnetoencephalography ,law.invention ,Alpha Rhythm ,Neurology ,Alpha rhythm ,law ,medicine ,Feasibility Studies ,Humans ,Radiology, Nuclear Medicine and imaging ,Neurology (clinical) ,Anatomy - Abstract
In the current article we present a first solid-state sensor feasible for magnetoencephalography (MEG), and working at room temperature. The sensor is a fluxgate magnetometer based on yttrium-iron garnet films (YIGM). In this feasibility study, we prove the concept of using the YIGM in terms of MEG by registering a simple brain-induced field: the human alpha rhythm (The data that support the findings of this study are available from the corresponding author upon reasonable request). All the experiments and results are validated with the usage of another kind of high-sensitive magnetometers - optically pumped magnetometer (OPM), which currently appears to be well-established in terms of MEG.
- Published
- 2021
37. Author Correction: MEG signatures of long-term effects of agreement and disagreement with the majority
- Author
-
Alexei Ossadtchi, Aleksei Gorin, Vasily Klucharev, V V Moiseeva, Anna Shestakova, and Ivan Zubarev
- Subjects
Adult ,Multidisciplinary ,Adolescent ,Computer science ,Science ,media_common.quotation_subject ,Magnetoencephalography ,Gyrus Cinguli ,Agreement ,Term (time) ,Cognition ,Parietal Lobe ,Econometrics ,Humans ,Learning ,Medicine ,Female ,Author Correction ,Social Behavior ,Evoked Potentials ,media_common - Abstract
People often change their beliefs by succumbing to an opinion of others. Such changes are often referred to as effects of social influence. While some previous studies have focused on the reinforcement learning mechanisms of social influence or on its internalization, others have reported evidence of changes in sensory processing evoked by social influence of peer groups. In this study, we used magnetoencephalographic (MEG) source imaging to further investigate the long-term effects of agreement and disagreement with the peer group. The study was composed of two sessions. During the first session, participants rated the trustworthiness of faces and subsequently learned group rating of each face. In the first session, a neural marker of an immediate mismatch between individual and group opinions was found in the posterior cingulate cortex, an area involved in conflict-monitoring and reinforcement learning. To identify the neural correlates of the long-lasting effect of the group opinion, we analysed MEG activity while participants rated faces during the second session. We found MEG traces of past disagreement or agreement with the peers at the parietal cortices 230 ms after the face onset. The neural activity of the superior parietal lobule, intraparietal sulcus, and precuneus was significantly stronger when the participant's rating had previously differed from the ratings of the peers. The early MEG correlates of disagreement with the majority were followed by activity in the orbitofrontal cortex 320 ms after the face onset. Altogether, the results reveal the temporal dynamics of the neural mechanism of long-term effects of disagreement with the peer group: early signatures of modified face processing were followed by later markers of long-term social influence on the valuation process at the ventromedial prefrontal cortex.
- Published
- 2021
38. Towards the non-zero field cesium magnetic sensor array for magnetoencephalography
- Author
-
Anton Vershovskii, Alex Ossadtchi, Anatoly Pazgalev, Sergei Dmitriev, and Mikhail Petrenko
- Abstract
Magnetic sensors developed for application in magnetoencephalography must meet a number of requirements; the main ones are compactness, sensitivity and response speed. We present a quantum optically pumped atomic sensor with cell volume of 0.5cm3 that meets these requirements and is operable in nonzero magnetic fields. The ultimate sensitivity of the sensor was estimated as (using the criteria of the ratio of the slope of the magnetic resonance signal to the shot noise spectral density) to be better than 5 fT/Hz1/2. The actual sensitivity, measured in a gradiometric scheme, reaches 13 fT/Hz1/2 per sensor. We also present a novel and fast algorithm for optimization of the geometric properties of non-zero field sensor array with respect to maximization of the information transfer rate for cortical sources.
- Published
- 2021
39. Evolution of MEG : A first MEG ‐feasible fluxgate magnetometer
- Author
-
Koshev, Nikolay, primary, Butorina, Anna, additional, Skidchenko, Ekaterina, additional, Kuzmichev, Alexey, additional, Ossadtchi, Alexei, additional, Ostras, Maxim, additional, Fedorov, Maxim, additional, and Vetoshko, Petr, additional
- Published
- 2021
- Full Text
- View/download PDF
40. MEG signatures of long-term effects of agreement and disagreement with the majority
- Author
-
Vasily Klucharev, Ivan Zubarev, V V Moiseeva, Alexey Gorin, Alexei Ossadtchi, Anna Shestakova, Higher School of Economics, Department of Neuroscience and Biomedical Engineering, Aalto-yliopisto, and Aalto University
- Subjects
medicine.medical_specialty ,Science ,education ,Ventromedial prefrontal cortex ,Precuneus ,Superior parietal lobule ,Intraparietal sulcus ,Audiology ,Article ,050105 experimental psychology ,03 medical and health sciences ,0302 clinical medicine ,medicine ,0501 psychology and cognitive sciences ,Neural correlates of consciousness ,Multidisciplinary ,05 social sciences ,Cognitive neuroscience ,Peer group ,medicine.anatomical_structure ,Posterior cingulate ,Medicine ,Orbitofrontal cortex ,Social neuroscience ,Psychology ,030217 neurology & neurosurgery - Abstract
People often change their beliefs by succumbing to an opinion of others. Such changes are often referred to as effects of social influence. While some previous studies have focused on the reinforcement learning mechanisms of social influence or on its internalization, others have reported evidence of changes in sensory processing evoked by social influence of peer groups. In this study, we used magnetoencephalographic (MEG) source imaging to further investigate the long-term effects of agreement and disagreement with the peer group. The study was composed of two sessions. During the first session, participants rated the trustworthiness of faces and subsequently learned group rating of each face. In the first session, a neural marker of an immediate mismatch between individual and group opinions was found in the posterior cingulate cortex, an area involved in conflict-monitoring and reinforcement learning. To identify the neural correlates of the long-lasting effect of the group opinion, we analysed MEG activity while participants rated faces during the second session. We found MEG traces of past disagreement or agreement with the peers at the parietal cortices 230 ms after the face onset. The neural activity of the superior parietal lobule, intraparietal sulcus, and precuneus was significantly stronger when the participant’s rating had previously differed from the ratings of the peers. The early MEG correlates of disagreement with the majority were followed by activity in the orbitofrontal cortex 320 ms after the face onset. Altogether, the results reveal the temporal dynamics of the neural mechanism of long-term effects of disagreement with the peer group: early signatures of modified face processing were followed by later markers of long-term social influence on the valuation process at the ventromedial prefrontal cortex.
- Published
- 2021
41. A P300 Brain-Computer Interface With a Reduced Visual Field
- Author
-
Alexei Ossadtchi, Vladimir Bulanov, Alexander Kolsanov, Luiza Kirasirova, Vasily Pyatin, and Mikhail A. Lebedev
- Subjects
Computer science ,General Neuroscience ,Speech recognition ,aperture ,Stimulus (physiology) ,Visual field ,lcsh:RC321-571 ,Sight ,Visual processing ,visual attention ,Asynchronous communication ,Peripheral vision ,Perspective ,Eye tracking ,visual fatigue ,central vision ,P300 BCI ,lcsh:Neurosciences. Biological psychiatry. Neuropsychiatry ,ERP ,Brain–computer interface ,Neuroscience - Abstract
A P300 brain-computer interface (BCI) is a paradigm, where text characters are decoded from event-related potentials (ERPs). In a popular implementation, called P300 speller, a subject looks at a display where characters are flashing and selects one character by attending to it. The selection is recognized as the item with the strongest ERP. The speller performs well when cortical responses to target and non-target stimuli are sufficiently different. Although many strategies have been proposed for improving the BCI spelling, a relatively simple one received insufficient attention in the literature: reduction of the visual field to diminish the contribution from non-target stimuli. Previously, this idea was implemented in a single-stimulus switch that issued an urgent command like stopping a robot. To tackle this approach further, we ran a pilot experiment where ten subjects operated a traditional P300 speller or wore a binocular aperture that confined their sight to the central visual field. As intended, visual field restriction resulted in a replacement of non-target ERPs with EEG rhythms asynchronous to stimulus periodicity. Changes in target ERPs were found in half of the subjects and were individually variable. While classification accuracy was slightly better for the aperture condition (84.3 ± 2.9%, mean ± standard error) than the no-aperture condition (81.0 ± 2.6%), this difference was not statistically significant for the entire sample of subjects (N = 10). For both the aperture and no-aperture conditions, classification accuracy improved over 4 days of training, more so for the aperture condition (from 72.0 ± 6.3% to 87.0 ± 3.9% and from 72.0 ± 5.6% to 97.0 ± 2.2% for the no-aperture and aperture conditions, respectively). Although in this study BCI performance was not substantially altered, we suggest that with further refinement this approach could speed up BCI operations and reduce user fatigue. Additionally, instead of wearing an aperture, non-targets could be removed algorithmically or with a hybrid interface that utilizes an eye tracker. We further discuss how a P300 speller could be improved by taking advantage of the different physiological properties of the central and peripheral vision. Finally, we suggest that the proposed experimental approach could be used in basic research on the mechanisms of visual processing.
- Published
- 2020
42. Fast parametric curve matching (FPCM) for automatic spike detection
- Author
-
Daria Kleeva, Gurgen Soghoyan, Ilia Komoltsev, Mikhail Sinkin, and Alexei Ossadtchi
- Subjects
Cellular and Molecular Neuroscience ,Epilepsy ,ROC Curve ,Biomedical Engineering ,Animals ,Humans ,Magnetoencephalography ,Electroencephalography ,Electrocorticography ,Artifacts ,Rats - Abstract
Objective. Epilepsy is a widely spread neurological disease, whose treatment often requires resection of the pathological cortical tissue. Interictal spike analysis observed in the non-invasively collected EEG or MEG data offers an attractive way to localize epileptogenic cortical structures for surgery planning purposes. Interictal spike detection in lengthy multichannel data is a daunting task that is still often performed manually. This frequently limits such an analysis to a small portion of the data which renders the appropriate risks of missing the potentially epileptogenic region. While a plethora of automatic spike detection techniques have been developed each with its own assumptions and limitations, none of them is ideal and the best results are achieved when the output of several automatic spike detectors are combined. This is especially true in the low signal-to-noise ratio conditions. To this end we propose a novel biomimetic approach for automatic spike detection based on a constrained mixed spline machinery that we dub as fast parametric curve matching (FPCM). Approach. Using the peak-wave shape parametrization, the constrained parametric morphological model is constructed and convolved with the observed multichannel data to efficiently determine mixed spline parameters corresponding to each time-point in the dataset. Then the logical predicates that directly map to verbalized text-book like descriptions of the expected interictal event morphology allow us to accomplish the spike detection task. Main results. The results of simulations mimicking typical low SNR scenarios show the robustness and high receiver operating characteristic AUC values of the FPCM method as compared to the spike detection performed using more conventional approaches such as wavelet decomposition, template matching or simple amplitude thresholding. Applied to the real MEG and EEG data from the human patients and to rat ECoG data, the FPCM technique demonstrates reliable detection of the interictal events and localization of epileptogenic zones concordant with independent conclusions made by the epileptologist. Significance. Since the FPCM is computationally light, tolerant to high amplitude artifacts and flexible to accommodate verbalized descriptions of an arbitrary target morphology, it is likely to complement the existing arsenal of means for analysis of noisy interictal datasets.
- Published
- 2022
43. Decoding Neural Signals with a Compact and Interpretable Convolutional Neural Network
- Author
-
Alexey Ossadtchi, Artur Petrosyan, and Mikhail A. Lebedev
- Subjects
Feature engineering ,business.industry ,Computer science ,Pattern recognition ,Artificial intelligence ,Kinematics ,business ,Adaptation (computer science) ,Convolutional neural network ,Decoding methods ,Brain–computer interface ,Convolution - Abstract
In this work, we motivate and present a novel compact CNN. For the architectures that combine the adaptation in both space and time, we describen a theoretically justified approach to interpreting the temporal and spatial weights. We apply the proposed architecture to Berlin BCI IV competition and our own datasets to decode electrocorticogram into finger kinematics. Without feature engineering our architecture delivers similar or better decoding accuracy as compared to the BCI competition winner. After training the network, we interpret the solution (spatial and temporal convolution weights) and extract physiologically meaningful patterns.
- Published
- 2020
44. Rotational dynamics versus sequence-like responses
- Author
-
Mikhail A Lebedev, Ivan Ninenko, and Alexei Ossadtchi
- Subjects
education.field_of_study ,Sequence ,Population ,Population data ,Neural population ,Biology ,education ,Rotational dynamics ,Neuronal population ,Neuroscience - Abstract
In a recent review, Vyas et al. commented on our previous observations regarding the presence of response sequences in the activity of cortical neuronal population and the contribution of such sequences to rotational dynamics patterns revealed with jPCA. Vyas et al. suggested that rotations generated from sequence-like responses are different from the ones arising from empirical neuronal patterns, which are highly heterogeneous across motor conditions in terms of response timing and shape. Here we extend our previous findings with new results showing that empirical population data contain plentiful neuronal responses whose shape and timing persist across arm-movement conditions. The more complex, heterogeneous responses can be also found; these response patterns also contain temporal sequences, which are evident from the analysis of cross-condition variance. Combined with simulation results, these observations show that both consistent and heterogeneous responses contribute to rotational patterns revealed with jPCA. We suggest that the users of jPCA should consider these two contributions when interpreting their results. Overall, we do not see any principal contradiction between the neural population dynamics framework and our results pertaining to sequence-like responses. Yet, questions remain regarding the conclusions that can be drawn from the analysis of low-dimensional representations of neuronal population data.
- Published
- 2020
45. A P300 brain-computer interface with a reduced visual field
- Author
-
Alexander Kolsanov, Mikhail A. Lebedev, Luiza Kirasirova, Alexei Ossadtchi, Vladimir Bulanov, and Vasily Pyatin
- Subjects
Visual processing ,Sight ,Visual field restriction ,Computer science ,Speech recognition ,Interface (computing) ,Aperture (computer memory) ,Peripheral vision ,Eye tracking ,Stimulus (physiology) ,Brain–computer interface ,Visual field - Abstract
A P300 brain-computer interface (BCI) is a paradigm, where text characters are decoded from visual evoked potentials (VEPs). In a popular implementation, called P300 speller, a subject looks at a display where characters are flashing and selects one character by attending to it. The selection is recognized by the strongest VEP. The speller performs well when cortical responses to target and non-target stimuli are sufficiently different. Although many strategies have been proposed for improving the spelling, a relatively simple one received insufficient attention in the literature: reduction of the visual field to diminish the contribution from non-target stimuli. Previously, this idea was implemented in a single-stimulus switch that issued an urgent command. To tackle this approach further, we ran a pilot experiment where ten subjects first operated a traditional P300 speller and then wore a binocular aperture that confined their sight to the central visual field. Visual field restriction resulted in a reduction of non-target responses in all subjects. Moreover, in four subjects, target-related VEPs became more distinct. We suggest that this approach could speed up BCI operations and reduce user fatigue. Additionally, instead of wearing an aperture, non-targets could be removed algorithmically or with a hybrid interface that utilizes an eye tracker. We further discuss how a P300 speller could be improved by taking advantage of the different physiological properties of the central and peripheral vision. Finally, we suggest that the proposed experimental approach could be used in basic research on the mechanisms of visual processing.
- Published
- 2020
46. Short-Delay Neurofeedback Facilitates Training of the Parietal Alpha Rhythm
- Author
-
Anastasia Belinskaya, Nikolai Smetanin, Alexei Ossadtchi, and Mikhail A. Lebedev
- Subjects
medicine.medical_specialty ,Computer science ,0206 medical engineering ,Biomedical Engineering ,Alpha (ethology) ,02 engineering and technology ,Electroencephalography ,Audiology ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,0302 clinical medicine ,Alpha rhythm ,medicine ,Humans ,Learning ,Short latency ,Latency (engineering) ,medicine.diagnostic_test ,business.industry ,Training (meteorology) ,Neurofeedback ,020601 biomedical engineering ,Alpha Rhythm ,Critical parameter ,Duration (music) ,Time course ,business ,030217 neurology & neurosurgery - Abstract
Objective. Feedback latency was shown to be a critical parameter in a range of applications that imply learning. The therapeutic effects of neurofeedback (NFB) remain controversial. We hypothesized that often encountered unreliable results of NFB intervention could be associated with large feedback latency values that are often uncontrolled and may preclude the efficient learning. Approach. We engaged our subjects into a parietal alpha power unpregulating paradigm facilitated by visual NFB based on the individually extracted envelope of the alpha-rhythm at P4 electrode. NFB was displayed either as soon as electroencephalographic (EEG) envelope was processed, or with an extra 250 or 500 ms delay. The feedback training consisted of 15 two-minute long blocks interleaved with 15 s pauses. We have also recorded 2 min long baselines immediately before and after the training. Main results. The time course of NFB-induced changes in the alpha rhythm power clearly depended on NFB latency, as shown with the adaptive Neyman test. NFB had a strong effect on the alpha-spindle incidence rate, but not on their duration or amplitude. The sustained changes in alpha activity measured after the completion of NFB training were negatively correlated to latency, with the maximum change for the shortest tested latency and no change for the longest. Significance. Here we for the first time show that visual NFB of parietal EEG alpha-activity is efficient only when delivered to human subjects at short latency, which guarantees that NFB arrives when an alpha spindle is still ongoing. Such a considerable effect of NFB latency on the alpha-activity temporal structure could explain some of the previous inconsistent results, where latency was neither controlled nor documented. Clinical practitioners and manufacturers of NFB equipment should add latency to their specifications while enabling latency monitoring and supporting short-latency operations.
- Published
- 2020
47. Modified covariance beamformer for solving MEG inverse problem in the environment with correlated sources
- Author
-
Alexei Ossadtchi, Aleksandra Kuznetsova, and Yulia M. Nurislamova
- Subjects
Beamforming ,Computer science ,Synchronous sources ,Cognitive Neuroscience ,Models, Neurological ,Neuroimaging ,050105 experimental psychology ,lcsh:RC321-571 ,03 medical and health sciences ,0302 clinical medicine ,Data covariance ,medicine ,Humans ,0501 psychology and cognitive sciences ,Computer Simulation ,Time series ,Projection (set theory) ,lcsh:Neurosciences. Biological psychiatry. Neuropsychiatry ,Image resolution ,MEG ,medicine.diagnostic_test ,Covariance matrix ,05 social sciences ,Brain ,Magnetoencephalography ,Signal Processing, Computer-Assisted ,Covariance ,Inverse problem ,Uncorrelated ,Correlated sources ,Distribution (mathematics) ,Neurology ,Algorithm ,030217 neurology & neurosurgery ,Algorithms - Abstract
Magnetoencephalography (MEG) is a neuroimaging method ideally suited for non-invasive studies of brain dynamics. MEG’s spatial resolution critically depends on the approach used to solve the ill-posed inverse problem in order to transform sensor signals into cortical activation maps. Over recent years non-globally optimized solutions based on the use of adaptive beamformers (BF) gained popularity. When operating in the environment with a small number of uncorrelated sources the BFs perform optimally and yield high spatial resolution. However, the BFs are known to fail when dealing with correlated sources acting like poorly tuned spatial filters with low signal-to-noise ratio (SNR) of the output timeseries and often meaningless cortical maps of power distribution. This fact poses a serious limitation on the broader use of this promising technique especially since fundamental mechanisms of brain functioning, its inherent symmetry and task-based experimental paradigms result into a great deal of correlation in the activity of cortical sources. To cope with this problem, we developed a novel data covariance modification approach that allows for building beamformers that maintain high spatial resolution when operating in the environments with correlated sources. At the core of our method is a projection operation applied to the vectorized sensor-space covariance matrix. This projection does not remove the activity of the correlated sources from the sensor-space covariance matrix but rather selectively handles their contributions to the covariance matrix and creates a sufficiently accurate approximation of an ideal data covariance that could hypothetically be observed should these sources be uncorrelated. Since the projection operation is reciprocal to the PSIICOS method developed by us earlier (Ossadtchi et al., 2018) we refer to the family of algorithms presented here as ReciPSIICOS. We assess the performance of the novel approach using realistically simulated MEG data and show its superior performance in comparison to the classical BF approaches and well established MNE as a method immune to source synchrony by design. We have also applied our approach to the MEG datasets from the two experiments involving two different auditory tasks. The analysis of experimental MEG datasets showed that beamformers from ReciPSIICOS family, but not the classical BF, discovered the expected bilateral focal sources in the primary auditory cortex and detected motor cortex activity associated with the audio-motor task. In most cases MNE managed well but as expected produced more spatially diffuse source distributions. Notably, ReciPSIICOS beamformers yielded cortical activity estimates with SNR several times higher than that obtained with the classical BF, which may indirectly indicate the severeness of the signal cancellation problem when applying classical beamformers to MEG signals generated by synchronous sources.
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- 2020
48. Decoding neural signals and discovering their representations with a compact and interpretable convolutional neural network
- Author
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Alexei Ossadtchi, Mikhail A. Lebedev, and Artur Petrosuan
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Feature engineering ,Computer science ,business.industry ,Motor control ,Pattern recognition ,Artificial intelligence ,Adaptation (computer science) ,business ,Convolutional neural network ,Decoding methods ,Task (project management) - Abstract
Brain-computer interfaces (BCIs) decode information from neural activity and send it to external devices. In recent years, we have seen an emergence of new algorithms for BCI decoding including those based on the deep-learning principles. Here we describe a compact convolutional network-based architecture for adaptive decoding of electrocorticographic (ECoG) data into finger kinematics. We also propose a theoretically justified approach to interpreting the spatial and temporal weights in the architectures that combine adaptation in both space and time, such as the one described here. In these architectures the weights are optimized not only to align with the target sources but also to tune away from the interfering ones, in both the spatial and the frequency domains. The obtained spatial and frequency patterns characterizing the neuronal populations pivotal to the specific decoding task can then be interpreted by fitting appropriate spatial and dynamical models.We first tested our solution using realistic Monte-Carlo simulations. Then, when applied to the ECoG data from Berlin BCI IV competition dataset, our architecture performed comparably to the competition winners without requiring explicit feature engineering. Moreover, using the proposed approach to the network weights interpretation we could unravel the spatial and the spectral patterns of the neuronal processes underlying the successful decoding of finger kinematics from another ECoG dataset with known sensor positions.As such, the proposed solution offers a good decoder and a tool for investigating neural mechanisms of motor control.
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- 2020
49. Local propagation dynamics of MEG interictal spikes: source reconstruction with traveling wave priors
- Author
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Alexei Ossadtchi, Mikhail A. Lebedev, and Aleksandra Kuznetsova
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Physics ,Superposition principle ,Source reconstruction ,Lasso (statistics) ,business.industry ,Local propagation ,Prior probability ,Traveling wave ,Ictal ,Pattern recognition ,Artificial intelligence ,Inverse problem ,business - Abstract
Epilepsy is one of the most common neurological disorders, with about 30% of cases being drug-resistant and requiring surgical intervention. To localize the epileptogenic zone (EZ), the pathological area that has to be surgically removed, brain regions are inspected for the presence of spikes during the interictal periods. This procedure maps irritative zones where spikes are present, but it is still challenging to determine which of the irritative zones generate seizures. To localize the source of seizures more precisely, a large-scale approach could be applied where the causal relationship is assessed between the signals recorded in a finite number of irritative zones [27]. This method however, does not reveal the fine-grained spatiotemporal patterns of spikes, which could provide valuable information regarding EZ location and increase the likelihood of surgery success [33].Here we present a framework to noninvasively investigate the fine patterns of interictal spikes present in magnetoencephalographic (MEG) data. We use a traveling wave model, previously employed in the analysis of cortical alpha oscillations [16], to regularize the MEG inverse problem and to determine the cortical paths of spike traveling waves. Our algorithm represents spike propagation patterns as a superposition of local waves traveling along radial paths stemming from a single origin. With the help of the positively constrained LASSO technique we scan over wave onset moment and propagation velocity parameters to determine their combination that yields the best fit to the MEG sensor data of each spike.We first used realistically simulated MEG data to validate the algorithm ability to successfully track interictal activity on a millimeter-millisecond scale. Next, we examined MEG data from three patients with drug-resistant epilepsy. Wave-like spike patterns with clear propagation dynamics were found in a fraction of spikes, whereas the other fraction could not be explained by the wave propagation model with a small number of propagation directions. Moreover, in agreement with the previous work [33], the spike waves with clear propagation dynamics exhibited spatial segregation and matched the clinical records on seizure onset zones (SOZs) available for two patients out of three.
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- 2020
50. Consensus on the reporting and experimental design of clinical and cognitive-behavioural neurofeedback studies (CRED-nf checklist)
- Author
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M.B. Sterman, Jean-Arthur Micoulaud-Franchi, James Sulzer, Michael Lührs, Mikhail A. Lebedev, Marc Cavazza, Renate Drechsler, Manuel Schabus, Tanju Surmeli, Naomi J. Steiner, Stephan Heunis, Alireza Gharabaghi, Rainer W Göbel, Ranganatha Sitaram, Feng Wan, Silivia E Kober, Adrian G. Guggisberg, Katya Rubia, Tomas Ros, Miriam Reiner, Panagiotis D. Bamidis, Stefanie Enriquez-Geppert, David M. A. Mehler, Frank Scharnowski, Thalía Fernández, Susan Whitfield-Gabrieli, Wenya Nan, Jerzy Bodurka, Jaime A. Pineda, Doron Todder, Dirk De Ridder, Bettina Sorger, Simon H. Kohl, Cornelia Kranczioch, Yury Koush, Talma Hendler, R Christopher deCharms, Michael Schönenberg, Daniel Brandeis, Surjo R. Soekadar, Tibor Auer, Marco Congedo, Manousos A. Klados, Vadim Zotev, Tieme W. P. Janssen, Alexei Ossadtchi, Niels Birbaumer, Paul A. Frewen, Laurence M. Hirshberg, Beatrix Barth, Andrea Kübler, Kymberly D. Young, Eddy J. Davelaar, Jarrod A. Lewis-Peacock, Carlos López Escolano, Marinus H. M. Breteler, Martijn Arns, Camille Jeunet, Michelle Hampson, Dimitri Van De Ville, Thomas Fovet, Patrik Vuilleumier, Robert T. Thibault, Nicolas Gninenko, Leslie H. Sherlin, Guilherme Wood, Stefan Debener, Ann-Christine Ehlis, John Gruzelier, Robert Guggenberger, Lilian Konicar, Kerstin Hoedlmoser, Andrew A. Nicholson, David Edmund Johannes Linden, François Vialatte, Joel F. Lubar, Ruth A. Lanius, O. M. Bazanova, Fabien Lotte, René J. Huster, Javier Minguez, Ute Strehl, Agostinho Rosa, Christian Paret, Institut de Neurosciences cognitives et intégratives d'Aquitaine (INCIA), Université Bordeaux Segalen - Bordeaux 2-Université Sciences et Technologies - Bordeaux 1-SFR Bordeaux Neurosciences-Centre National de la Recherche Scientifique (CNRS), Signal Processing Systems, Clinical Neuropsychology, Vuilleumier, Patrik, Van De Ville, Dimitri, Guggisberg, Adrian, Vision, RS: FPN CN 1, RS: MHeNs - R1 - Cognitive Neuropsychiatry and Clinical Neuroscience, RS: MHeNs - R2 - Mental Health, RS: MHeNs - R3 - Neuroscience, RS: FPN CN 7, and Clinical Developmental Psychology
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Male ,Applied psychology ,Brain and Behaviour ,Medical and Health Sciences ,sham ,Experimental Psychopathology and Treatment ,power ,ddc:616.89 ,0302 clinical medicine ,guidelines ,ComputingMilieux_MISCELLANEOUS ,Confusion ,deficit hyperactivity disorder ,05 social sciences ,[SDV.NEU.SC]Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC]/Cognitive Sciences ,Cognition ,regulation ,amygdala ,neurofeedback ,Middle Aged ,Checklist ,3. Good health ,confusion ,Research Design ,Female ,medicine.symptom ,Psychology ,neurostimulation ,Adult ,Scrutiny ,Cognitive Neuroscience ,ddc:616.0757 ,050105 experimental psychology ,Update ,03 medical and health sciences ,children ,Stakeholder Participation ,medicine ,Humans ,0501 psychology and cognitive sciences ,Neurology & Neurosurgery ,Psychology and Cognitive Sciences ,blind ,ddc:616.8 ,Clinical neurology ,attention ,consensus ,RC0321 ,Neurology (clinical) ,Neurofeedback ,checklist ,030217 neurology & neurosurgery - Abstract
Neurofeedback is going through a renaissance. Advances in brain imaging and computing have renewed efforts to modify brain activity and behaviour using this technique. Here, over 80 neurofeedback researchers present a consensus-derived checklist – CRED-nf – for reporting and experimental design standards in the field., Neurofeedback has begun to attract the attention and scrutiny of the scientific and medical mainstream. Here, neurofeedback researchers present a consensus-derived checklist that aims to improve the reporting and experimental design standards in the field.
- Published
- 2020
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