40 results on '"Nam YK"'
Search Results
2. Generation of safety enhancedEdwardsiella tardaghost vaccine
- Author
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Lee, DJ, primary, Kwon, SR, additional, Zenke, K, additional, Lee, EH, additional, Nam, YK, additional, Kim, SK, additional, and Kim, KH, additional
- Published
- 2008
- Full Text
- View/download PDF
3. Effects of bile acids on proliferation and production of proteinase activity of Uronema marinum (Ciliophora: Scuticociliatida)
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Kim, HJ, primary, Choi, SK, additional, Choi, SH, additional, Kim, MS, additional, Kim, SK, additional, Nam, YK, additional, and Kim, KH, additional
- Published
- 2004
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4. Pseudocohnilembus persalinus (Ciliophora: Scuticociitida) is an additional species causing scuticociliatosis in olive flounder Paralichthys olivaceus
- Author
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Kim, SM, primary, Cho, JB, additional, Lee, EH, additional, Kwon, SR, additional, Kim, SK, additional, Nam, YK, additional, and Kim, KH, additional
- Published
- 2004
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5. Comparison of toxic effects of nitric oxide and peroxynitrite on Uronema marinum (Ciliata: Scuticociliatida)
- Author
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Lee, EH, primary, Kim, SM, additional, Kwon, SR, additional, Kim, SK, additional, Nam, YK, additional, and Kim, KH, additional
- Published
- 2004
- Full Text
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6. Occurrence of scuticociliatosis in olive flounder Paralichthys olivaceus by Phiasterides dicentrarchi (Ciliophora: Scuticociliatida)
- Author
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Kim, SM, primary, Cho, JB, additional, Kim, SK, additional, Nam, YK, additional, and Kim, KH, additional
- Published
- 2004
- Full Text
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7. LIPOSA pharmacopuncture, a new herbal formula, affects localized adiposity by regulating lipid metabolism in vivo .
- Author
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Lee H, Kim MH, Jin SC, Choi Y, Nam YK, and Yang WM
- Abstract
Localized adiposity is a serious aesthetic problem and a well-known health risk factor. There is a growing interest in minimally invasive treatment options for excessive fat accumulation, such as pharmacopuncture. LIPOSA is a newly developed pharmacopuncture formula from three natural herbs: The tuber of Pinellia ternata (Thunb.) Breitenb., the whole plant of Taraxacum platycarpum Dahlst. and the root of Astragalus membranaceus Bunge. The present study investigated the effects of pharmacopuncture treatment with LIPOSA on localized adiposity. Male C57BL/6J mice were fed high fat diet for 8 weeks to induce obesity. Then, 100 µl LIPOSA was injected into the left-side inguinal fat pad at various concentrations, including 13.35, 26.7 and 53.4 mg/ml. Normal saline was injected into the right-side inguinal fat pad of each mouse as a control. The treatment was performed three times per week for 2 weeks. The weight and histological changes were analyzed in the inguinal fat pad of the obese mice. The expression levels of adipose triglyceride lipase (ATGL), hormone-sensitive lipase (HSL), autophagy-related gene (ATG)5, ATG7 and LC3-II, as lipophagy-related factors, were evaluated to confirm the lipid-catabolic effects of LIPOSA. LIPOSA pharmacopuncture markedly decreased the weight of the fat tissue and the size of the adipocytes in the inguinal region of the mouse models of obesity in a dose-dependent manner. The expression levels of ATGL, HSL, ATG5, ATG7 and LC3-II were significantly increased by the LIPOSA treatments. In addition, LIPOSA pharmacopuncture was found to decrease the expression levels of ACC, PPAR-γ and PEPCK. The results indicated that subcutaneous injection of LIPOSA can degrade local fat and induce lipophagic and lipase activation effects. In addition, lipid metabolism related to fat accumulation was regulated by the LIPOSA treatment. The present study suggests that LIPOSA pharmacopuncture can be a non-surgical alternative in the treatment of localized adiposity., Competing Interests: The authors declare that they have no competing interests., (Copyright: © Lee et al.)
- Published
- 2021
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8. Deep learning-based thin-section MRI reconstruction improves tumour detection and delineation in pre- and post-treatment pituitary adenoma.
- Author
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Lee DH, Park JE, Nam YK, Lee J, Kim S, Kim YH, and Kim HS
- Subjects
- Adult, Aged, Female, Humans, Male, Middle Aged, Retrospective Studies, Adenoma diagnostic imaging, Deep Learning, Image Processing, Computer-Assisted methods, Magnetic Resonance Imaging methods, Pituitary Neoplasms diagnostic imaging
- Abstract
Even a tiny functioning pituitary adenoma could cause symptoms; hence, accurate diagnosis and treatment are crucial for management. However, it is difficult to diagnose a small pituitary adenoma using conventional MR sequence. Deep learning-based reconstruction (DLR) using magnetic resonance imaging (MRI) enables high-resolution thin-section imaging with noise reduction. In the present single-institution retrospective study of 201 patients, conducted between August 2019 and October 2020, we compared the performance of 1 mm DLR MRI with that of 3 mm routine MRI, using a combined imaging protocol to detect and delineate pituitary adenoma. Four readers assessed the adenomas in a pairwise fashion, and diagnostic performance and image preferences were compared between inexperienced and experienced readers. The signal-to-noise ratio (SNR) was quantitatively assessed. New detection of adenoma, achieved using 1 mm DLR MRI, was not visualised using 3 mm routine MRI (overall: 6.5% [13/201]). There was no significant difference depending on the experience of the readers in new detections. Readers preferred 1 mm DLR MRI over 3 mm routine MRI (overall superiority 56%) to delineate normal pituitary stalk and gland, with inexperienced readers more preferred 1 mm DLR MRI than experienced readers. The SNR of 1 mm DLR MRI was 1.25-fold higher than that of the 3 mm routine MRI. In conclusion, the 1 mm DLR MRI achieved higher sensitivity in the detection of pituitary adenoma and provided better delineation of normal pituitary gland than 3 mm routine MRI., (© 2021. The Author(s).)
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- 2021
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9. Involvement of the miR-363-5p/P2RX4 Axis in Regulating Schwann Cell Phenotype after Nerve Injury.
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Sohn EJ, Nam YK, and Park HT
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- Animals, Cells, Cultured, Down-Regulation physiology, Female, Mice, Mice, Inbred C57BL, Myelin Sheath metabolism, Phenotype, Pregnancy, Rats, Rats, Sprague-Dawley, Signal Transduction physiology, Up-Regulation physiology, MicroRNAs metabolism, Peripheral Nerve Injuries metabolism, Receptors, Purinergic P2X4 metabolism, Schwann Cells metabolism
- Abstract
Although microRNAs (miRNAs or miRs) have been studied in the peripheral nervous system, their function in Schwann cells remains elusive. In this study, we performed a microRNA array analysis of cyclic adenosine monophosphate (cAMP)-induced differentiated primary Schwann cells. KEGG pathway enrichment analysis of the target genes showed that upregulated miRNAs (mR212-5p, miR335, miR20b-5p, miR146b-3p, and miR363-5p) were related to the calcium signaling pathway, regulation of actin cytoskeleton, retrograde endocannabinoid signaling, and central carbon metabolism in cancer. Several key factors, such as purinergic receptors (P2X), guanine nucleotide-binding protein G(olf) subunit alpha (GNAL), P2RX5, P2RX3, platelet-derived growth factor receptor alpha (PDGFRA), and inositol 1,4,5-trisphosphate receptor type 2 (ITPR2; calcium signaling pathway) are potential targets of miRNAs regulating cAMP. Our analysis revealed that miRNAs were differentially expressed in cAMP-treated Schwann cells; miRNA363-5p was upregulated and directly targeted the P2X purinoceptor 4 (P2RX4)-UTR, reducing the luciferase activity of P2RX4. The expression of miRNA363-5p was inhibited and the expression of P2RX4 was upregulated in sciatic nerve injury. In contrast, miRNA363-5p expression was upregulated and P2RX4 expression was downregulated during postnatal development. Of note, a P2RX4 antagonist counteracted myelin degradation after nerve injury and increased pERK and c-Jun expression. Interestingly, a P2RX4 antagonist increased the levels of miRNA363-5p. This study suggests that a double-negative feedback loop between miRNA363-5p and P2RX4 contributes to the dedifferentiation and migration of Schwann cells after nerve injury.
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- 2021
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10. Pharmacopuncture of Taraxacum platycarpum extract reduces localized fat by regulating the lipolytic pathway.
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Nam YK, Park SJ, Kim MH, Choi Y, and Yang WM
- Subjects
- 3T3-L1 Cells, Adipose Tissue metabolism, Animals, Diet, High-Fat, Fatty Acids metabolism, Glycerol metabolism, Inguinal Canal, Lipase metabolism, Lipid Metabolism drug effects, Lipid Metabolism genetics, Male, Mice, Mice, Inbred C57BL, Obesity drug therapy, Obesity metabolism, Adipose Tissue drug effects, Lipolysis drug effects, Lipolysis genetics, Plant Extracts pharmacology, Taraxacum chemistry
- Abstract
Localized fat deposits are associated with health and aesthetic problems that mainly affect a large proportion of individuals. Recently, bioactive constituents of TP have been reported to affect lipid metabolism. In this study, we performed a network pharmacological analysis to assume potential lipolytic effects of TP and investigated the actual lipolytic effects of TP extract injection on local body fat and its underlying mechanism. Using the genes related to active compounds of TP, the network was constructed. Through the Functional Enrichment Analysis, Lipid Metabolism and Fatty Acid Metabolism were expected to be affiliated with the network, which implied possible lipolytic effects of TP. On the comparison between TP network and Obesity-related Gene Sets, about three-fourths of elements were in common with the gene sets, which indicated a high relevance between TP and obesity. Based on the genes in lipolysis-related pathways, Perilipin, CGI-58, ATGL, HSL and MGL were selected to identify the actual lipolytic effects of TP. TP injection reduced the inguinal fat weight. Also, the diameter of the adipocytes was decreased by the TP treatment in HFD-induced obese mice. In addition, TP suppressed lipid accumulation in differentiated 3T3-L1 adipocytes. Moreover, because the expression of Perilipin was increased, CGI-58, ATGL, HSL and MGL were markedly decreased. Furthermore, glycerol release was down-regulated by the TP treatment. TP exerted its lipolytic effects by regulating the lipolysis machinery through stimulation of lipases. Based on the present findings, TP is expected to be a potent component of injection lipolysis for removing localized body fat., (Copyright © 2021 The Authors. Published by Elsevier Masson SAS.. All rights reserved.)
- Published
- 2021
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11. Rare Neurovascular Diseases in Korea: Classification and Related Genetic Variants.
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Song Y, Kwon B, Al-Abdulwahhab AH, Nam YK, Ahn Y, Jeong SY, Seo EJ, Lee JK, and Suh DC
- Subjects
- Databases, Factual, Humans, Republic of Korea epidemiology, Prevalence
- Abstract
Rare neurovascular diseases (RNVDs) have not been well-recognized in Korea. They involve the central nervous system and greatly affect the patients' lives. However, these diseases are difficult to diagnose and treat due to their rarity and incurability. We established a list of RNVDs by referring to the previous literature and databases worldwide to better understand the diseases and their current management status. We categorized 68 RNVDs based on their pathophysiology and clinical manifestations and estimated the prevalence of each disease in Korea. Recent advances in genetic, molecular, and developmental research have enabled further understanding of these RNVDs. Herein, we review each disease, while considering its classification based on updated pathologic mechanisms, and discuss the management status of RNVD in Korea., Competing Interests: The authors have no potential conflicts of interest to disclose., (Copyright © 2021 The Korean Society of Radiology.)
- Published
- 2021
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12. Fat regulatory mechanisms of pine nut oil based on protein interaction network analysis.
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Jin SC, Kim MH, Choi Y, Nam YK, and Yang WM
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- Adipocytes drug effects, Adipose Tissue drug effects, Adipose Tissue, White drug effects, Animals, Anti-Obesity Agents pharmacology, Diet, High-Fat, Leptin blood, Linolenic Acids, Lipogenesis drug effects, Male, Mice, Mice, Inbred C57BL, Obesity drug therapy, PPAR gamma metabolism, Sterol Regulatory Element Binding Protein 1 metabolism, Nuts chemistry, Plant Oils chemistry, Protein Interaction Maps
- Abstract
Background: Pine nut oil (PNO), a standardized and well-defined extract of Pinus koraiensis (Korean pine), has beneficial effects on wound healing, inflammatory diseases, and cancer. However, the explanation for the mechanism by which PNO reduces body fat remains uncertain. We performed a protein-protein interaction network (PPIN) analysis to explore the genes associated with pinolenic acid using the MEDILINE database from PubChem and PubMed. It was concluded through the PPIN analysis that PNO was involved in a neutral lipid biosynthetic process., Purpose: This study evaluated the effects of PNO predicted by the network analysis of fat accumulation in chronic obesity mouse models established by feeding a high fat diet (HFD) to C57BL/6J mice and explored potential mechanisms., Methods: HFD mice were fed only HFD or HFD with PNO at 822 and 1644 mg/kg. After an oral administration of 7 weeks, several body weight and body fat-related parameters were examined, including the following: adipose weight, adipocyte size, serum lipid profiles, adipocyte expression of PPAR-γ, sterol regulatory element binding protein (SREBP)-1c, lipoprotein lipase (LPL) and leptin., Results: We showed that oral administration of PNO to HFD mice reduces body fat weight, fat in tissue, white adipose tissue weight, and adipocyte size. The serum cholesterol was improved in the HFD mice treated with PNO. Additionally, PNO has significantly attenuated the HFD-induced changes in the adipose tissue expression of PPAR-γ, SREBP-1c, LPL, and leptin., Conclusions: The findings from this study based on the PPIN analysis suggest that PNO has potential as drug to reduce body fat through fat regulatory mechanisms by PPAR-γ and SREBP-1c., (Copyright © 2021. Published by Elsevier GmbH.)
- Published
- 2021
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13. Palmul -Tang, a Korean Medicine, Promotes Bone Formation via BMP-2 Pathway in Osteoporosis.
- Author
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Choi Y, Kim MH, Nam YK, Kim JH, Cho HY, and Yang WM
- Abstract
Osteoporosis is a common skeletal disease in post-menopausal women. Palmul -tang, an herbal medicine, has been treated for gynecological disease such as anemia, anorexia, anti-fatigue, unspecified menstruation and female infertility in East Asia. In this study, ameliorative effects of Palmul -tang soft extracts (PMT), a Korean Medicine, on osteoporosis were investigated. Ovariectomized (OVX) osteoporotic ICR mice were intragastrically administrated PMT for 4 weeks. The level of bone mineral density (BMD) was analyzed in bone tissues by dual X-ray absorptiometry. The bone medullary cavity and deposition of collagen were investigated by histological analysis. In addition, the BMP-2 signaling-related molecules, osteoblastic differentiation and formation markers, were determined in femoral tissues. The levels of BMD and bone mineral content were significantly increased in tibia, femurs and LV by treatment of PMT. PMT replenished bone marrow cavity and increased collagen deposition in bone marrow cells of femur. In addition, administration of PMT recovered serum ALP, bALP, osteocalcin and calcium levels in osteoporotic mice. Moreover, PMT treatment up-regulated the expressions of BMP-2, RUNX2 and OSX with its downstream factors, ALP, OPN and BSP-1, in the femoral tissues. Taken together, PMT restored the bone minerals and improvement of bone integrity by bone-forming BMP-2 signaling pathway. These results demonstrate that PMT could be an ameliorative agent for osteoporosis., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Choi, Kim, Nam, Kim, Cho and Yang.)
- Published
- 2021
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14. Derma-Hc, a New Developed Herbal Formula, Ameliorates Cutaneous Lichenification in Atopic Dermatitis.
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Nam YK, Kim MH, Ha IJ, and Yang WM
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- Animals, Dermatitis, Atopic pathology, Filaggrin Proteins, Keratinocytes drug effects, Keratinocytes pathology, Male, Mice, Mice, Inbred BALB C, Plant Extracts chemistry, Skin pathology, Dermatitis, Atopic drug therapy, Plant Extracts therapeutic use, Plants, Medicinal chemistry, Skin drug effects
- Abstract
Atopic dermatitis (AD) is a chronic cutaneous disorder that is characterized by severe eczematous inflammation, swelling, and lichenification. Activation of T helper (Th)-22 cells by allergens leads to epidermal hyperplasia with hyperkeratosis at the chronic phase of AD. Derma-Hc is composed of five natural herbs with anti-AD effects, such as Astragalus membranaceus BUNGE, Schizonepeta tenuifolia Briq., Cryptotympana pustulata Fabr., Angelica sinensis Diels, Arctium lappa L. In this study, the ameliorative effect of Derma-Hc on cutaneous lichenification in 2,4-dinitrochlorobenzne (DNCB)-induced AD was investigated. The dorsal skin of mice was sensitized with DNCB to induce AD-like skin lesions. The dermatitis score and frequency of scratching were evaluated. Thickness of epidermis and dermis was measured by staining with H&E. In addition, infiltration of the mast cell was observed by staining with toluidine blue. Then, desmosomal cadherin, DSC1 was examined by immunofluorescence. Pathological mechanisms involved in lichenification were analyzed in AD-like skin lesions and TNF-α + IFN-γ-treated with human keratinocytes including keratinocyte differentiation genes and JAK1-STAT3 signaling pathway with IL-22 by RT-PCR and western blotting. Topical treatment of Derma-Hc improved AD-like symptoms such as dryness, edema and lichenefication and decreased the number of scratches. Histopathological analysis demonstrated that Derma-Hc significantly inhibited epidermal hyperplasia, hyperkeratosis, and mast cells infiltration. In addition, the level of DSC1 was highly expressed in the epidermis by Derma-Hc. Moreover, mRNA expression level of FLG, an epidermal differentiation complex gene, was recovered by Derma-Hc treatment. KLK5 and KLK7 were markedly reduced to normalize keratinocyte differentiation in dorsal skin tissues and human keratinocytes. On the other hand, Derma-Hc restored expression level of SPINK5. In addition, Derma-Hc inhibited IL-22 via the blockade of JAK1-STAT3 signal pathway. Taken together, Derma-Hc, a natural herbal formula, regulated keratinocyte differentiation and inhibited epidermal hyperplasia with hyperkeratosis. Therefore, Derma-Hc could be a promising candidate for treating chronic AD through modulating signaling of IL-22-associated skin lichenification.
- Published
- 2021
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15. Superoxide Dismutase Multigene Family from a Primitive Chondrostean Sturgeon, Acipenser baerii : Molecular Characterization, Evolution, and Antioxidant Defense during Development and Pathogen Infection.
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Kim CH, Kim EJ, and Nam YK
- Abstract
Three distinct superoxide dismutases (SODs)-copper/zinc-SOD (SOD1), manganese-SOD (SOD2), and extracellular copper/zinc-SOD (SOD3)-were identified from a primitive chondrostean fish, Acipenser baerii , enabling the comparison of their transcriptional regulation patterns during development, prelarval ontogeny, and immune stimulation. Each A. baerii SOD isoform (AbSOD) shared conserved structural features with its vertebrate orthologs; however, phylogenetic analyses hypothesized a different evolutionary history for AbSOD3 relative to AbSOD1 and AbSOD2 in the vertebrate lineage. The AbSOD isoforms showed different tissue distribution patterns; AbSOD1 was predominantly expressed in most tissues. The expression of the AbSOD isoforms showed isoform-dependent dynamic modulation according to embryonic development and prelarval ontogenic behaviors. Prelarval microinjections revealed that lipopolysaccharide only induced AbSOD3 expression, while Aeromonas hydrophila induced the expression of AbSOD2 and AbSOD3. In fingerlings, the transcriptional response of each AbSOD isoform to bacterial infection was highly tissue-specific, and the three isoforms exhibited different response patterns within a given tissue type; AbSOD3 was induced the most sensitively, and its induction was the most pronounced in the kidneys and skin. Collectively, these findings suggest isoform-dependent roles for the multigene SOD family in antioxidant defenses against the oxidative stress associated with development and immune responses in these endangered sturgeon fish.
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- 2021
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16. Transcriptome Analysis of Maternal Gene Transcripts in Unfertilized Eggs of Misgurnus anguillicaudatus and Identification of Immune-Related Maternal Genes.
- Author
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Kim CH, Kim EJ, Seo C, and Nam YK
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- Animals, Chemokines genetics, Chemokines metabolism, Cypriniformes immunology, Female, Fish Proteins genetics, Fish Proteins metabolism, Male, Maternal Inheritance, Phagocytosis genetics, Cypriniformes genetics, Oocytes metabolism, Transcriptome
- Abstract
Maternal genes are important in directing early development and determining egg quality in fish. We here report the de novo transcriptome from four tissue libraries of the cyprinid loach, Misgurnus anguillicaudatus , and for the first time identified maternal gene transcripts in unfertilized eggs and suggest their immune system involvement. Expression profiles and functional enrichment revealed a total 24,116 transcripts were expressed as maternal transcripts in unfertilized eggs, which were involved in a wide range of biological functions and pathways. Comparison expression profiles and analysis of tissue specificity revealed that the large numbers of maternal transcripts were stored in unfertilized eggs near the late phase of ovarian maturation and before ovulation. Functional classification showed a total of 279 maternal immune-related transcripts classified with immune system process GO term and immune system KEGG pathway. qPCR analysis showed that transcript levels of identified maternal immune-related candidate genes were dynamically modulated during development and early ontogeny of M. anguillicaudatus. Taken together, this study could not only provide knowledge on the protective roles of maternal immune-related genes during early life stage of M. anguillicaudatus but could also be a valuable transcriptomic/genomic resource for further analysis of maternally provisioned genes in M. anguillicaudatus and other related teleost fishes.
- Published
- 2020
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17. Banhahubak -Tang Tablet, a Standardized Medicine Attenuates Allergic Asthma via Inhibition of Janus Kinase 1 (JAK1)/ Signal Transducer and Activator of Transcription 6 (STAT6) Signal Pathway.
- Author
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Nam YK, Jin SC, Kim MH, Choi Y, Lee YB, and Yang WM
- Subjects
- Animals, Anti-Asthmatic Agents chemistry, Cytokines immunology, Disease Models, Animal, Female, Lung immunology, Lung pathology, Mice, Mice, Inbred BALB C, Tablets, Th2 Cells immunology, Th2 Cells pathology, Anti-Asthmatic Agents pharmacology, Asthma drug therapy, Asthma immunology, Asthma pathology, Janus Kinase 1 immunology, STAT6 Transcription Factor immunology, Signal Transduction drug effects
- Abstract
Exposure to particulate matter (PM) has been known to be one of the risk factors to cause allergic asthma, leading to development of respiratory disease. Banhahubak -tang tablet (BHT), a standardized Korean Medicine, is prescribed for neurasthenia, laryngopharyngitis and asthma. In this study, we investigated therapeutic effects of BHT on airway inflammation in ovalbumin (OVA) and PM smaller than 10 μm (PM
10 )-induced allergic asthma mice. To establish allergic asthma with airway hyper-responsiveness by PM10 , BALB/c mice were sensitized and challenged with OVA and PM10 , and orally administered BHT. Histological staining was performed to assess airway remodeling. Serum and bronchoalveolar lavage fluid (BALF) was collected for measuring immunoglobulin levels and counting inflammatory cells, respectively. Expression levels of Janus kinase 1 (JAK1)/signal transducer and activator of transcription 6 (STAT6), pro-inflammatory cytokines and type 2 T-helper (Th2)-related cytokines were analyzed in vivo and in vitro models. Histopathological analysis demonstrated that BHT suppressed inflammatory cell infiltration, mucus hypersecretion and collagen deposition in the airway. BHT administration effectively decreased number of inflammatory cells in BALF. BHT reduced total serum Immunoglobulin E (IgE) and Immunoglobulin G (IgG) levels. In addition, BHT significantly inhibited the phosphorylation of JAK1 and STAT6 expressions. Release of pro-inflammatory cytokines and Th2-related cytokines were down-regulated by BHT. In conclusion, BHT mitigated airway inflammation by down-regulating pro-inflammatory and Th2-related cytokines via JAK1/STAT6 signaling. BHT might be a promising herbal medicine for preventing airway inflammation. Moreover, an intervention study among humans is needed to further evaluate the possible beneficial effects of BHT in allergic asthma.- Published
- 2020
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18. Characterization of testis-specific serine/threonine kinase 1-like (TSSK1-like) gene and expression patterns in diploid and triploid Pacific abalone (Haliotis discus hannai; Gastropoda; Mollusca) males.
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Kim EJ, Kim SJ, Park CJ, and Nam YK
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- Amino Acid Sequence, Animals, Cloning, Molecular, Diploidy, Humans, Male, Phylogeny, Protein Serine-Threonine Kinases classification, Protein Serine-Threonine Kinases genetics, Sequence Alignment, Spermatozoa metabolism, Testis pathology, Triploidy, Gastropoda metabolism, Protein Serine-Threonine Kinases metabolism, Testis metabolism
- Abstract
Testis-specific serine/threonine kinase 1-like (TSSK1-like), which plays important roles in late-phase spermatogenesis and male fertility, was characterized in Pacific abalone Haliotis discus hannai, an important commercial marine gastropod. Further, its expression patterns were assessed in diploid and induced triploid males showing differential degrees of testis maturation. Abalone TSSK1-like shared conserved structural features with mammalian TSSK1s and other potential metazoan orthologs, especially regarding the catalytic STKc domain. Phylogenetically, abalone TSSK1-like displayed a genetic affiliation with its molluscan TSSK1-like orthologs and human TSSK1. Additionally, abalone TSSK1-like gene showed a tetrapartite exon-intron organization, unlike the intronless structure of most amniotic tetrapodian TSSK1s. Molecular phylogenetic analysis in the metazoan lineage suggested a possible revision in the origin of the earliest ancestral TSSK1. Further, abalone TSSK1-like showed testis-predominant expression, which was significantly influenced by both age and seasonal reproductive cycles. Comparative expression analyses between diploid and triploid abalone males suggested that robust TSSK1-like expression occurred primarily at the post-meiotic stage. Additionally, RT-PCR assay indicates that mature abalone sperms retain TSSK1-like transcripts after release. Taken together, this study provides useful insights for further studies to assess male reproduction and sterility and/or partial fertility of induced male triploidy in abalone species., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2019
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19. Transcriptional Activity of an Estrogen Receptor β Subtype in the Medaka Oryzias dancena .
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Maeng S, Yoon SW, Kim EJ, Nam YK, and Sohn YC
- Abstract
In vertebrate reproductive system, estrogen receptor (ER) plays a pivotal role in mediation of estrogenic signaling pathways. In the present study, we report the cDNA cloning, expression analysis, and transcriptional activity of ERβ1 subtype from medaka Oryzias dancena . The deduced O. dancena ERβ1 (odERβ1; 519 amino acids) contained six characteristic A/B to E/F domains with very short activation function 2 region (called AF2). A phylogenetic analysis indicated that odERβ1 was highly conserved among teleost ERβ1 subgroup. A conventional RT-PCR revealed that the odERβ1 transcripts were widely distributed in the multiple tissues, the ovary, brain, gill, intestine, kidney, and muscle. Further, the relatively higher odERβ1 expressions in the ovary and brain were clearly reproduced in RT-qPCR assay. When HA-fused odERβ1 expression vector was transfected into HEK293 cells, an immunoreactivity for odERβ1 was mainly detected in the nucleus part. Finally, an estrogen responsive element driven luciferase reporter assays demonstrated that the transcriptional activity of odERβ1 significantly increased by estradiol-17β (E2) in a dose dependent manner ( p <0.05). However, fold-activation of odERβ1 in the presence of E2 was markedly weak, when it compared with those of O. latipes ERβ1. Taken together, these data suggest that odERβ1 represents a functional variant of teleost ERβ subtype and provides a basic tool allowing future studies examining the function of F domain of ERβ1 subtype and expanding our knowledge of ERβ evolution., (© Copyright 2019 The Korean Society of Developmental Biology.)
- Published
- 2019
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20. Anesthetic protocol for microinjection-related handling of Siberian sturgeon (Acipenser baerii; Acipenseriformes) prolarvae.
- Author
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Kim EJ and Nam YK
- Subjects
- Animals, Aminobenzoates pharmacology, Anesthesia methods, Clove Oil pharmacology, Fishes, Lidocaine pharmacology, Microinjections instrumentation, Microinjections methods
- Abstract
An anesthetic protocol was optimized for microinjection-related handling of Siberian sturgeon (Acipenser baerii; Acipenseriformes) prolarvae, an extant primitive fish species commonly grown in aquaculture. Comparative examinations of three selected anesthetics (clove oil, lidocaine, and MS-222) with a dosage regime of 50, 100, 200, and 400 mg/L indicated that MS-222 was the most efficient agent for Siberian sturgeon prolarvae, as evidenced by the fast induction of anesthesia with quick and uniform recovery. Meanwhile, clove oil should be avoided, due to prolonged recovery times varying widely between individuals. None of the tested anesthetics significantly affected prolarval viability at any of the dosage regimes tested in this study. Based on an analysis of the duration of an unconscious state in air, we recommend a dose of 200 mg/L MS-222 for microinjection. Recovery time after use of this dose was influenced by the prolarval age and the development of gills, in which prolarvae older than 3 days after hatching required longer recovery times than did younger prolarvae. Post-recovery behavioral assessment showed no apparent difference between MS-222-anesthetized and non-anesthetized prolarvae in their swimming behavior and phototactic responses. Applicability of currently developed anesthetic protocol using MS-222 in larval microinjection was demonstrated with the injection of a visible dye to the anesthetized prolarvae, followed by the analysis of post-recovery viability. Taken together, the present anesthetic protocol based on 200 mg/L of MS-222 could provide researchers with practical usefulness with good safety margins for the micromanipulation and other related handlings of Siberian sturgeon prolarvae., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2018
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21. Enhanced Adhesion of Fish Ovarian Germline Stem Cells on Solid Surfaces by Mussel-Inspired Polymer Coating.
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Jeong Y, Ryu JH, Nam YK, Gong SP, and Kang SM
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- Animals, Cell Adhesion, Cells, Cultured, Female, Fisheries, Oryzias, Photoelectron Spectroscopy, Surface Properties, Bivalvia chemistry, Cell Culture Techniques methods, Indoles chemistry, Oogonial Stem Cells, Polylysine chemistry, Polymers chemistry
- Abstract
Development of advanced cell culture methods has gained increasing attention because it allows for efficient genetic engineering and precise regulation of animal reproduction on a cellular basis. Numerous studies have attempted to develop an advanced cell culture method. Previous studies have altered cell culture media and pretreated culture plates with functional molecules. Among them, a mussel-inspired polymer coating has been extensively utilized owing to its wide applicability. For instance, adhesion of human embryonic stem cells and neuronal cells on solid surfaces has been improved. Despite the excellent capability of the mussel-inspired polymer coating, most studies have primarily focused on mammalian cells. However, the efficacy of these coatings on the adhesion of other cell lines is yet unclear. This study aimed to assess the potential of the mussel-inspired polymer coating in the regulation of the adhesion of fish ovarian germline stem cells on solid surfaces. Solid surfaces were coated by polydopamine and poly-L-lysine, and the effect of the coatings on cellular behaviors was investigated., Competing Interests: The authors declare no conflicts of interest.
- Published
- 2018
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22. Upregulation of microRNA 344a-3p is involved in curcumin induced apoptosis in RT4 schwannoma cells.
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Sohn EJ, Bak KM, Nam YK, and Park HT
- Abstract
Background: Schwannoma arising from peripheral nervous sheaths is a benign tumor., Methods: To evaluate cell cytotoxicity, (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) tetrazolium reduction and terminal deoxynucleotidyltransferase UTP nick-end labeling (TUNEL) assays were used. A microRNA (miRNA) array was used to identify the miRNAs involved in curcumin-induced apoptosis. To examine miRNA expression, quantitative RT-PCR was used., Results: In this study, curcumin exerted cellular cytotoxicity against RT4 schwannoma cells, with an increase in TUNEL-positive cells. Curcumin also activated the expression of apoptotic proteins, such as polyADP ribose polymerase, caspase-3, and caspase-9. The miRNA array revealed that seven miRNAs (miRNA 350, miRNA 17-2-3p, let 7e-3p, miRNA1224, miRNA 466b-1-3p, miRNA 18a-5p, and miRNA 322-5p) were downregulated following treatment with both 10 and 20 μM curcumin in RT4 cells, while four miRNAs (miRNA122-5p, miRNA 3473, miRNA182, and miRNA344a-3p) were upregulated. Interestingly, transfection with a miRNA 344a-3p mimic downregulated the mRNA expression of Bcl2 and upregulated that of Bax, Curcumin treatment in RT 4 cells also reduced the mRNA expression of Bcl2 and enhanced expression of Bax, Overexpression of miRNA344a-3p mimic combined with curcumin treatment activated the expression of apoptotic proteins, including procaspase-9 and cleaved caspase-3 while inhibition of miRNA 344a-3p using miR344a-3p inhibitor repressed cleaved caspase-3 and -9 in curcumin treated RT-4 cells compared to control., Conclusions: Our findings demonstrate that curcumin induces apoptosis in schwannoma cells via miRNA 344a-3p. Thus, curcumin may serve as a potent therapeutic agent for the treatment of schwannoma.
- Published
- 2018
- Full Text
- View/download PDF
23. An assessment of the use of complementary and alternative medicine by Korean people using an adapted version of the standardized international questionnaire (I-CAM-QK): a cross-sectional study of an internet survey.
- Author
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Lee JA, Sasaki Y, Arai I, Go HY, Park S, Yukawa K, Nam YK, Ko SG, Motoo Y, Tsutani K, and Lee MS
- Subjects
- Adult, Cross-Sectional Studies, Female, Health Personnel statistics & numerical data, Humans, Male, Middle Aged, Republic of Korea epidemiology, Young Adult, Complementary Therapies statistics & numerical data, Internet, Surveys and Questionnaires
- Abstract
Background: In Korea, there are two types of medical doctors: one practises conventional medicine (hereafter called a physician), and the other practises traditional medicine (hereafter called a Korean medical doctor). This study aimed to compare the provision of complementary and alternative medicine (CAM) by these providers to CAM use per self-judgement in Korea., Methods: We analysed 1668 Korean people via an internet survey with the Korean adopted version of the I-CAM-Q, namely, the International Questionnaire to measure use of CAM, to understand whether respondents used CAM based either on a prescription or advice from a physician or a Korean medical doctor or on self-judgement., Results: In the previous 12 months, the proportions of respondents who were treated by a physician, who were treated by a Korean medical doctor and who were not treated by anyone were 67.9, 20.7 and 14.2%, respectively. Among the respondents who received CAM based on a prescription or advice from a physician, traditional Korean medicine practices and dietary supplements were commonly used; only a small percentage used other CAM therapies. Respondents who received CAM based on a prescription or advice from a Korean medical doctor showed similar results. Acupuncture and moxibustion, traditional Korean medicines (decoction), or cupping were more commonly used. Korean traditional medicines as over-the-counter (OTC) drugs were more commonly used by respondents who received CAM therapy based on a prescription or advice from a physician than by those who received CAM therapy based on a prescription or advice from a Korean medical doctor. A total of 74% of the responders used any CAM by self-judgement in the previous 12 months., Conclusions: For the use of CAM in Korea, in addition to the Korean traditional medical care provided by Korean medical doctors, general physicians advised people regarding Korean traditional medical care and dietary supplements.
- Published
- 2018
- Full Text
- View/download PDF
24. Non-lethal method for the preparation of metaphase spreads using cultured mantle tissue from live adult abalone.
- Author
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Ryu JH, Lee SY, Nam YK, and Gong SP
- Subjects
- Animals, Cell Proliferation, Cells, Cultured, Gastropoda genetics, Tissue Culture Techniques, Gastropoda cytology, Karyotyping methods, Metaphase genetics
- Abstract
Metaphase spread preparation in adult abalone has not been successful, which has restricted the applications of karyotyping-based technologies. Here, we present a non-lethal method to enable preparation of metaphase spreads from live adult abalone using a tissue culture method. Mantle tissue fragments from live adult abalone were cultured in vitro and the cultured cells were used for metaphase spread preparation. To retrieve a sufficient number of proliferating cells required for metaphase spread preparation, at least 14 days of culture was required, and culturing the marginal zone of mantle was more optimal than culturing other areas. Additionally, it was shown that simple medium consisting of basal medium, fetal bovine serum and antibiotics could stimulate cellular proliferation followed by metaphase spread preparation.
- Published
- 2018
- Full Text
- View/download PDF
25. Effect of Marine-Derived Ice-Binding Proteins on the Cryopreservation of Marine Microalgae.
- Author
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Kim HJ, Koo BW, Kim D, Seo YS, and Nam YK
- Subjects
- Animals, Antifreeze Proteins pharmacology, Aquatic Organisms, Carrier Proteins pharmacology, Cell Survival, Cryopreservation, Antifreeze Proteins chemistry, Carrier Proteins chemistry, Microalgae drug effects
- Abstract
Ice-binding protein (IBPs) protect cells from cryo-injury during cryopreservation by inhibiting ice recrystallization (IR), which is a main cause of cell death. In the present study, we employed two IBPs, one, designated LeIBP from Arctic yeast, and the other, designated FfIBP from Antarctic sea ice bacterium, in the cryopreservation of three economically valuable marine microalgae, Isochrysis galbana, Pavlova viridis , and Chlamydomonas coccoides . Both of the IBPs showed IR inhibition in f/2 medium containing 10% DMSO, indicating that they retain their function in freezing media. Microalgal cells were frozen in 10% DMSO with or without IBP. Post-thaw viability exhibited that the supplementation of IBPs increased the viability of all cryopreserved cells. LeIBP was effective in P. viridis and C. coccoides, while FfIBP was in I. galbana . The cryopreservative effect was more drastic with P. viridis when 0.05 mg/mL LeIBP was used. These results clearly demonstrate that IBPs could improve the viability of cryopreserved microalgal cells., Competing Interests: The authors declare no conflict of interest.
- Published
- 2017
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26. Effects of Clove Oil and Lidocaine-HCl Anesthesia on Water Parameter during Simulated Transportation in the Marine Medaka, Oryzias dancena .
- Author
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Park IS, Gil HW, Lee TH, Nam YK, Lim SG, and Kim DS
- Abstract
Optimum concentrations of anesthetic clove oil and anesthetic lidocaine-HCl were determined for a species of adult marine medaka, Oryzias dancena , over a range of salinity conditions, and investigated in a transport simulation experiment by analyzing various water and physiological parameters. Research indicated that the higher the concentration of anesthetic at each salinity, the shorter the anesthesia time at each salinity. At each concentration, fish were anesthetized slower at water salinities over 10 ppt ( P <0.05). Anesthesia time at 10 ppt was faster than any other salinity. In 10 ppt salinity, the dissolved oxygen (DO) concentrations and respiratory frequencies of the clove-oil-administered groups decreased until 48 hours ( P< 0.05), whereas the NH
4 + and CO2 concentrations increased until 48 hours ( P< 0.05). In same period, the DO, NH4 + , and CO2 concentrations and respiratory frequencies all decreased as the clove oil concentration increased ( P< 0.05). The trends in the DO, NH4 + , and CO2 concentrations and respiratory frequencies in the lidocaine-HCl-administered groups were similar to those in the clove-oil-administered groups. In conclusion, clove oil and lidocaine-HCl are effective anesthetics, improving the transportation of the marine medaka. The results from this study will contribute to safe laboratory handling of the marine medaka, which are commonly required by many research studies and experiments.- Published
- 2017
- Full Text
- View/download PDF
27. Comparative Study of Growth and Gonad Maturation in Diploid and Triploid Marine Medaka, Oryzias dancena .
- Author
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Park IS, Gil HW, Lee TH, Nam YK, and Kim DS
- Abstract
The marine medaka, Oryzias dancena is a suitable sample as a laboratory animal because it has a small size and clearly distinguishes between female and male. Data on the growth and maturity of the diploid and triploid sea cucurbit species suitable for laboratory animals are very useful for studying other species. Triploidy was induced in the marine medaka by cold shock treatment (0°C) of fertilized eggs for 45 min, applied two minutes after fertilization. The diploid and triploid male fish were larger than their female counterparts ( P< 0 . 05), and the concentrations of thyroid stimulating hormone (TSH) and thyroxine (T4) were higher in the induced triploids over 1 year ( P< 0 . 05). In both the diploid and tri-ploid groups the concentrations of TSH and T4 were higher in the male fish than in the females ( P< 0 . 05), while the testo-sterone and estradiol-17ß concentrations in the induced triploids were lower than in the diploids ( P< 0 . 05). The gonadosomatic index (GSI) of the triploid fish was lower than that for the diploids, and the GSI for females in each ploidy group were higher than that for the males. For both groups the GSI was highest at 4 months of age, and decreased thereafter to 12 months. Analysis of the gonads of one-year-old triploid fish suggested that the induction of triploidy probably causes sterility in this species; this effect was more apparent in females than in males.
- Published
- 2016
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- View/download PDF
28. Magnetic resonance metabolic profiling of breast cancer tissue obtained with core needle biopsy for predicting pathologic response to neoadjuvant chemotherapy.
- Author
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Choi JS, Baek HM, Kim S, Kim MJ, Youk JH, Moon HJ, Kim EK, and Nam YK
- Subjects
- Adult, Aged, Biopsy, Large-Core Needle, Breast Neoplasms pathology, Discriminant Analysis, Female, Humans, Magnetic Resonance Spectroscopy, Middle Aged, Treatment Outcome, Breast Neoplasms drug therapy, Breast Neoplasms metabolism, Metabolomics, Neoadjuvant Therapy
- Abstract
The purpose of this study was to determine whether metabolic profiling of core needle biopsy (CNB) samples using high-resolution magic angle spinning (HR-MAS) magnetic resonance spectroscopy (MRS) could be used for predicting pathologic response to neoadjuvant chemotherapy (NAC) in patients with locally advanced breast cancer. After institutional review board approval and informed consent were obtained, CNB tissue samples were collected from 37 malignant lesions in 37 patients before NAC treatment. The metabolic profiling of CNB samples were performed by HR-MAS MRS. Metabolic profiles were compared according to pathologic response to NAC using the Mann-Whitney test. Multivariate analysis was performed with orthogonal projections to latent structure-discriminant analysis (OPLS-DA). Various metabolites including choline-containing compounds were identified and quantified by HR-MAS MRS in all 37 breast cancer tissue samples obtained by CNB. In univariate analysis, the metabolite concentrations and metabolic ratios of CNB samples obtained with HR-MAS MRS were not significantly different between different pathologic response groups. However, there was a trend of lower levels of phosphocholine/creatine ratio and choline-containing metabolite concentrations in the pathologic complete response group compared to the non-pathologic complete response group. In multivariate analysis, the OPLS-DA models built with HR-MAS MR metabolic profiles showed visible discrimination between the pathologic response groups. This study showed OPLS-DA multivariate analysis using metabolic profiles of pretreatment CNB samples assessed by HR- MAS MRS may be used to predict pathologic response before NAC, although we did not identify the metabolite showing statistical significance in univariate analysis. Therefore, our preliminary results raise the necessity of further study on HR-MAS MR metabolic profiling of CNB samples for a large number of cancers.
- Published
- 2013
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29. Shallow Population Genetic Structures of Thread-sail Filefish (Stephanolepis cirrhifer) Populations from Korean Coastal Waters.
- Author
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Yoon M, Park W, Nam YK, and Kim DS
- Abstract
Genetic diversities, population genetic structures and demographic histories of the thread-sail filefish Stephanolepis cirrhifer were investigated by nucleotide sequencing of 336 base pairs of the mitochondrial DNA (mtDNA) control region in 111 individuals collected from six populations in Korean coastal waters. A total of 70 haplotypes were defined by 58 variable nucleotide sites. The neighbor-joining tree of the 70 haplotypes was shallow and did not provide evidence of geographical associations. Expansion of S. cirrhifer populations began approximate 51,000 to 102,000 years before present, correlating with the period of sea level rise since the late Pleistocene glacial maximum. High levels of haplotype diversities (0.974±0.029 to 1.000±0.076) and nucleotide diversities (0.014 to 0.019), and low levels of genetic differentiation among populations inferred from pairwise population F ST values (-0.007 to 0.107), support an expansion of the S. cirrhifer population. Hierarchical analysis of molecular variance (AMOVA) revealed weak but significant genetic structures among three groups (F CT = 0.028, p<0.05), and no genetic variation within groups (0.53%; F SC = 0.005, p = 0.23). These results may help establish appropriate fishery management strategies for stocks of S. cirrhifer and related species.
- Published
- 2012
- Full Text
- View/download PDF
30. Anesthetic effects of clove oil and lidocaine-HCl on marine medaka (Oryzias dancena).
- Author
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Park IS, Park SJ, Gil HW, Nam YK, and Kim DS
- Subjects
- Anesthesia Recovery Period, Animals, Body Size, Dose-Response Relationship, Drug, Hot Temperature, Swimming, Anesthesia veterinary, Anesthetics, Local, Clove Oil, Lidocaine, Oryzias physiology
- Abstract
Fish may be anesthetized for various experimental and practical purposes, primarily to immobilize them in order to facilitate handling. Marine medaka (Oryzias dancena) is a teleost fish used in marine ecotoxicology studies. Despite the importance of anesthesia in handling experimental fish, the effects of anesthesia in marine medaka have not yet been investigated. In this study, the authors evaluated the anesthetic effects (time required for anesthesia to take effect and recovery time) of two anesthetic agents, clove oil and lidocaine-HCl, on marine medaka. They anesthetized fish at different water temperatures (23 °C, 26 °C and 29 °C) and using different concentrations of clove oil (50 ppm, 75 ppm, 100 ppm, 125 ppm, 150 ppm and 175 ppm) or lidocaine-HCl (300 ppm, 400 ppm, 500 ppm, 600 ppm, 700 ppm and 800 ppm). The time required for anesthesia to take effect decreased significantly as both anesthetic concentration and water temperature increased for both clove oil and lidocaine-HCl. To anesthetize marine medaka within approximately 1 min, the optimal concentrations for clove oil were 125 ppm at 23 °C, 100 ppm at 26 °C and 75 ppm at 29 °C and for lidocaine-HCl were 800 ppm at 23 °C and 700 ppm at both 26 °C and 29 °C. The authors also compared anesthetic effects in marine medaka of different sizes. Both anesthetic exposure time and recovery time were significantly shorter for smaller fish than for larger fish. These results provide a useful foundation for the laboratory handling of marine medaka.
- Published
- 2011
- Full Text
- View/download PDF
31. Variability of responses in the crucian carp Carassius carassius from two Ukrainian ponds determined by multi-marker approach.
- Author
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Falfushynska HI, Gnatyshyna LL, Priydun CV, Stoliar OB, and Nam YK
- Subjects
- Animals, Biomarkers metabolism, Carps growth & development, Cholinesterases metabolism, Cytochrome P-450 CYP1A1 metabolism, Gills metabolism, Glutathione metabolism, Glutathione Transferase metabolism, Liver metabolism, Oxidative Stress physiology, Ukraine, Vitellogenins metabolism, Carps metabolism, Gills drug effects, Liver drug effects, Metals toxicity, Oxidative Stress drug effects, Water Pollutants, Chemical toxicity
- Abstract
The aim of this study was to evaluate the health status of the comparatively tolerant fish Carassius carassius over three seasons in an area characterized by spontaneous human activities. Sites near the springs of a river (site Z) and downstream of a river (site B) in Western Ukraine were selected. According to the centroid grouping analysis, the biochemical and morphological indices allowed the fish to be distinguished according to season more than to site. The level of nuclear abnormalities was low in fish from both sites. However C. carassius inhabiting site B showed a lower metal-binding capacity of MTs in relation to fish from site Z. This was combined with high levels of MT protein (particularly in the liver), and reduced glutathione (GSH) and redox state of GSH (particularly in the gills), which might confer some advantages to fish inhabiting this site. The levels of ethoxyresorufin-O-deethylase, glutathione-S-transferase, cholinesterase and vitellogenin-like proteins indicated significant but intermittent inter-site differences. In summer, oxidative damage due to a high level of lipid peroxidation, and low superoxide dismutase and catalase activities was observed in fish from site B, and in autumn, it was observed in the gills of fish from site Z. The relationship between MT protein levels and antioxidant defense and the lack of a positive relationship between MT levels and their metal-binding capacity was confirmed by principal component analysis., (Copyright © 2010 Elsevier Inc. All rights reserved.)
- Published
- 2010
- Full Text
- View/download PDF
32. Development of siRNA expression vector utilizing rock bream beta-actin promoter: a potential therapeutic tool against viral infection in fish.
- Author
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Zenke K, Nam YK, and Kim KH
- Subjects
- Animals, Base Sequence, Fishes, Gene Knockdown Techniques, Molecular Sequence Data, RNA, Small Interfering genetics, Sequence Analysis, DNA, Actins genetics, Fish Diseases therapy, Genetic Therapy methods, Iridovirus genetics, Promoter Regions, Genetic, RNA, Small Interfering metabolism, Virus Diseases therapy
- Abstract
In the present study, we have developed short interfering RNA (siRNA) expression vector utilizing rock bream beta-actin promoter and examined the possible use for the inhibition of highly pathogenic fish virus, rock bream iridovirus (RBIV), replication in vitro. Initially, in order to express siRNA effectively, we added several modifications to wild-type rock bream beta-actin promoter. Next, we succeeded in knocking down the expression of enhanced green fluorescent protein reporter gene expression in fish cells using newly developed vector more effectively than the fugu U6 promoter-driven vector we described previously. Finally, we could observe that cells transfected with modified rock bream beta-actin promoter-driven siRNA expression vector targeting major capsid protein (MCP) gene of RBIV exhibited more resistance to RBIV challenge than other control cells. Our results indicate that this novel siRNA expression vector can be used as a new tool for therapeutics in virus infection in fish species.
- Published
- 2010
- Full Text
- View/download PDF
33. Evaluation of optimal culture conditions for recombinant ghost bacteria vaccine production with the antigen of Streptococcus iniae GAPDH.
- Author
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Ra CH, Kim YJ, Park SJ, Jeong CW, Nam YK, Kim KH, and Kim SK
- Subjects
- Animals, Antigens, Bacterial genetics, Cloning, Molecular, Escherichia coli genetics, Fish Diseases immunology, Fishes, Streptococcal Infections immunology, Antigens, Bacterial immunology, Bacterial Vaccines genetics, Fish Diseases microbiology, Streptococcal Infections veterinary, Streptococcus immunology
- Abstract
For the production of ghost bacteria vaccine to prevent the streptococcal disease in aquaculture fish species, a double cassettes vector was constructed and cloned in Escherichia coli DH5alpha. Ghost bacteria vaccine production from Escherichia coli DH5alpha/pHCE-InaN-GAPDH-Ghost 37 SDM (SIG) was maximized at a glucose concentration of 1 g/l, agitation of 300 rpm, and aeration of 1 vvm. The maximal efficiency of ghost bacteria formation was obtained at the mid-exponential phase (OD600=2.0) with the concentration of 0.77 g/l for SIG. The molecular mass of GAPDH was detected at 67 kDa with the insoluble fraction, by SDS-PAGE and Western blot. The protective efficacy of ghost bacteria vaccine was evaluated by challenge test using olive flounder. The cumulative mortalities of the positive control, formalin-killed cell (FKC) vaccine, and SIG vaccine immunized groups were 91% , 74% , and 57% , respectively. These results suggest that SIG vaccine showed efficacy as a vaccine and had a higher potential to induce protective antibodies than did FKC vaccine.
- Published
- 2009
- Full Text
- View/download PDF
34. Gene structure and differential modulation of multiple rockbream (Oplegnathus fasciatus) hepcidin isoforms resulting from different biological stimulations.
- Author
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Cho YS, Lee SY, Kim KH, Kim SK, Kim DS, and Nam YK
- Subjects
- Amino Acid Sequence, Animals, Antimicrobial Cationic Peptides genetics, Bacterial Infections metabolism, Bacterial Infections veterinary, Base Sequence, Fish Diseases metabolism, Fish Diseases microbiology, Hepcidins, Iridovirus physiology, Iron Overload metabolism, Iron Overload veterinary, Molecular Sequence Data, Organ Specificity, Perciformes genetics, Perciformes microbiology, Promoter Regions, Genetic, Protein Isoforms genetics, Protein Isoforms metabolism, RNA, Messenger genetics, RNA, Messenger metabolism, Transcription, Genetic, Antimicrobial Cationic Peptides metabolism, Perciformes metabolism, Transcription Factors metabolism
- Abstract
Hepcidin, an antimicrobial and iron-regulating peptide, is a key molecule of the innate immune system of bony fish. In this study, four isoforms of hepcidin genes were characterized from a marine Perciform fish, rockbream (Oplegnathus fasciatus), and the transcriptional modulations of these isoforms in response to different biological stimulations were also examined. All rockbream hepcidin isoform genes exhibited a tripartite structure and their promoter regions displayed typical binding motifs for the transcription factors including C/EBP, HNF, AP, NF-kbeta, GATA, USF and/or STAT. Hepcidin transcripts in juvenile or fingerling tissues were dramatically induced during experimental challenges with various bacterial species, iron overload and rockbream iridovirus infection. The transcription ofhepcidins was regulated in an isoform- and tissue-specific fashion. In addition, we identified for the first time that partially processed hepcidin transcripts were significantly elevated during bacterial infection and iron overload. Results from this study provide a good basis to better understand the isoform-specific role of hepcidin in the fish innate immune system.
- Published
- 2009
- Full Text
- View/download PDF
35. Generation of safety enhanced Edwardsiella tarda ghost vaccine.
- Author
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Lee DJ, Kwon SR, Zenke K, Lee EH, Nam YK, Kim SK, and Kim KH
- Subjects
- Animals, DNA, Bacterial metabolism, Enterobacteriaceae Infections prevention & control, Escherichia coli genetics, Gene Expression Regulation, Bacterial, Micrococcal Nuclease genetics, Plasmids genetics, Time Factors, Vaccines, Inactivated immunology, Viral Proteins genetics, Bacterial Vaccines immunology, Edwardsiella tarda immunology, Enterobacteriaceae Infections veterinary, Fish Diseases prevention & control
- Abstract
A dual vector expressing the ghost-inducing PhiX174 lysis E gene and the bacterial DNA degrading staphylococcal nuclease A (SNA) gene was constructed to solve the problem of remnant antibiotic resistance genes and genomic DNA with intact pathogenic islands in the final product of Edwardsiella tarda ghosts (ETG). The SNA (devoid of secretion signal sequence and the nuclease B amino terminus sequence), fused with the 26 amino acid N-terminal sequence of the lambda phage Cro gene, showed successful degradation of bacterial nucleic acids. Furthermore, the nuclease activity of SNA in E. tarda was enhanced by codon optimization of the SNA gene using site-directed mutagenesis. ETG were generated via coexpression of the SNA gene and lysis gene E under the control of each lambdaP(R) promoter. The ghost bacteria generation system we describe is advantageous as it allows the use of a single plasmid, improves safety and vaccine purity by limiting residual genetic content from the ghost bacteria, and reduces production costs through cheap means of induction that use only temperature shifts.
- Published
- 2008
- Full Text
- View/download PDF
36. Gene structure and expression of metallothionein during metal exposures in Hemibarbus mylodon.
- Author
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Cho YS, Lee SY, Kim KY, Bang IC, Kim DS, and Nam YK
- Subjects
- Aging, Amino Acid Sequence, Animals, Base Sequence, Conservation of Natural Resources, DNA, Complementary genetics, Gene Expression Regulation physiology, Gills metabolism, Kidney metabolism, Liver metabolism, Metallothionein chemistry, Metallothionein genetics, Molecular Sequence Data, RNA, Messenger genetics, RNA, Messenger metabolism, Time Factors, Cypriniformes genetics, Cypriniformes metabolism, Gene Expression Regulation drug effects, Metallothionein metabolism, Metals pharmacology
- Abstract
Metallothionein gene was characterized in Hemibarbus mylodon, an endangered fish species. H. mylodon MT shared a high homology with other vertebrate MTs, including (1) tripartite exon/intron structure, (2) typical regulatory elements such as MREs and GC boxes in the 5'-flanking region, and (3) high proportion of Cysteines (33.3%) in its amino acid sequence. MT mRNA was ubiquitously detected in various tissues. Basal level of MT mRNA was the highest in ovary while the lowest in heart. Transcription of MT was highly inducible by exposures to waterborne cadmium (0.1-10 microM), copper (2-10 microM) or zinc (2-10 microM), based on real-time RT-PCR. Cadmium was more potent for the stimulation of MT transcripts than copper and zinc. Liver was more responsive to heavy metals than kidney and gill. In overall, the transcriptional activation of MT gene by metal exposures followed a dose- and/or time-dependent fashion.
- Published
- 2008
- Full Text
- View/download PDF
37. Vaccination of shrimp (Penaeus chinensis) against white spot syndrome virus (WSSV).
- Author
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Ha YM, Soo-Jung G, Thi-Hoai N, Ra CH, Kim KH, Nam YK, and Kim SK
- Subjects
- Animals, Cell Line, Gene Expression, Penaeidae virology, Recombinant Proteins genetics, Recombinant Proteins immunology, Recombinant Proteins metabolism, Spodoptera, Vaccination, Viral Structural Proteins genetics, Viral Structural Proteins metabolism, Viral Vaccines genetics, Viral Vaccines metabolism, White spot syndrome virus 1 genetics, White spot syndrome virus 1 metabolism, Penaeidae immunology, Viral Structural Proteins immunology, Viral Vaccines immunology, White spot syndrome virus 1 immunology
- Abstract
Two structural protein genes, VP19 and VP466, of white spot syndrome virus (WSSV) were cloned and expressed in Sf21 insect cells using a baculovirus expression system for the development of injection and oral feeding vaccines against WSSV for shrimps. The cumulative mortalities of the shrimps vaccinated by the injection of rVP19 and rVP466 at 15 days after the challenge with WSSV were 50.2% and 51.8%, respectively. For the vaccination by oral feeding of rVP19 and rVP466, the cumulative mortalities were 49.2% and 89.2%, respectively. These results show that protection against WSSV can be generated in the shrimp, using the viral structural protein as a protein vaccine.
- Published
- 2008
38. Molecular orbital theory on cellulolytic reactivity between pNP-cellooligosccharides and beta-glucosidase from Cellulomonas uda CS1-1.
- Author
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Yoon MH, Nam YK, Choi WY, and Sung ND
- Subjects
- Hydrolysis, Kinetics, Quantitative Structure-Activity Relationship, beta-Glucosidase chemistry, beta-Glucosidase isolation & purification, Cellulomonas enzymology, Cellulose metabolism, Oligosaccharides chemistry, beta-Glucosidase metabolism
- Abstract
A beta-glucosidase with the molecular mass of 160,000 Da was purified to homogeneity from cell extract of a cellulolytic bacterium, Cellulomonas uda CS1-1. The kinetic parameters (Km and Vmax) of the enzyme were determined with pNP-cellooligosccharides (DP 1-5) and cellobiose. The molecular orbital theoretical studies on the cellulolytic reactivity between the pNP-cellooligosaccharides as substrate (S) molecules and the purified beta-glucosidase (E) were conducted by applying the frontier molecular orbital (FMO) interaction theory. The results of the FMO interaction between E and S molecules verified that the first stage of the reaction was induced by exocyclic cleavage, which occurred in an electrophilic reaction based on a strong charge-controlled reaction between the highest occupied molecular orbital (HOMO) energy of the S molecule and the lowest occupied molecular orbital (LUMO) energy of the hydronium ion (H3O+), more than endocyclic cleavage, whereas a nucleophilic substitution reaction was induced by an orbital-controlled reaction between the LUMO energy of the oxonium ion (SH+) protonated to the S molecule and the HOMO energy of the H2O2 molecule. A hypothetic reaction route was proposed with the experimental results in which the enzymatic acid-catalyst hydrolysis reaction of E and S molecules would be progressed via SN1 and SN2 reactions. In addition, the quantitative structure-activity relationships (QSARs) between these kinetic parameters showed that Km has a significant correlation with hydrophobicity (logP), and specific activity has with dipole moment, respectively.
- Published
- 2007
39. Optimization of cryoprotectants for cryopreservation of rat hepatocyte.
- Author
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Son JH, Kim KH, Nam YK, Park JK, and Kim SK
- Subjects
- Animals, Cell Culture Techniques methods, Cell Survival drug effects, Cells, Cultured, Dimethyl Sulfoxide pharmacology, Dose-Response Relationship, Drug, Glycerol pharmacology, Hepatocytes drug effects, Male, Rats, Rats, Sprague-Dawley, Serum Albumin, Bovine pharmacology, Cryopreservation methods, Cryoprotective Agents pharmacology, Hepatocytes physiology
- Abstract
Rat hepatocytes were cryopreserved in hormonally-defined medium (HDM) containing either fetal bovine serum (FBS), glycerol, dimethyl sulfoxide (DMSO), sucrose or a mixture of these as a cryoprotectant. The best survival was with 10% (v/v) DMSO containing 30% (v/v) FBS using 5 x 10(5) hepatocytes ml(-1) at -70 degrees C for 5 d on type I collagen-coated dishes. After thawing, the cell viability was 81% determined by the MTT-test. The cryopreserved hepatocytes had the capacity of albumin synthesis similar to hepatocytes without cryopreservation. This result shows that cryopreservation of rat hepatocyte can be used for the evaluation of hepatic functions.
- Published
- 2004
- Full Text
- View/download PDF
40. Genomic organization and sequence of the mud loach (Misgurnus mizolepis) growth hormone gene: a comparative analysis of teleost growth hormone genes.
- Author
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Noh JK, Cho KN, Nam YK, Kim DS, and Kim CG
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Cloning, Molecular, Evolution, Molecular, Growth Hormone chemistry, Molecular Sequence Data, Phylogeny, Restriction Mapping, Sequence Homology, Amino Acid, Cypriniformes genetics, Growth Hormone genetics
- Abstract
The mud loach (Misgurnus mizolepis) growth hormone (GH) gene was cloned and a comparative analysis on its genomic organization was performed. Based on Southern analysis using various kinds of restriction endonucleases, the GH gene proved to exist as a single-copy gene in the mud loach. The complete nucleotide sequences of a 5.1 kb SacI/EcoRI genomic fragment containing the mud loach GH gene and its 5' flanking sequences as well as a mud loach GH cDNA obtained by rapid amplification of a reverse transcriptase-PCR have been determined. The GH gene spans 2.0 kb from the start codon to the polyadenylation signal, and contains five exons and four introns similar to those of carps and mammals. The evolutionary relation of the mud loach GH gene, inferred by comparative analyses of gene structures and sequences in each exon and intron of representative teleost GH genes, reflects the major phylogenetic groupings of teleost.
- Published
- 1999
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