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Linking genotype with phenotype is a fundamental goal in biology and requires robust data for both. Recent advances in plant-genome sequencing have expedited comparisons among multiple-related individuals. The abundance of structural genomic within-species variation that has been discovered indicates that a single reference genome cannot represent the complete sequence diversity of a species, leading to the expansion of the pan-genome concept. For high-resolution forward genetics, this unprecedented access to genomic variation should be paralleled and integrated with phenotypic characterization of genetic diversity. We developed a multi-parental framework for trait dissection in melon (Cucumis melo), leveraging a novel pan-genome constructed for this highly variable cucurbit crop. A core subset of 25 diverse founders (MelonCore25), consisting of 24 accessions from the two widely cultivated subspecies of C. melo, encompassing 12 horticultural groups, and 1 feral accession was sequenced using a combination of short- and long-read technologies, and their genomes were assembled de novo. The construction of this melon pan-genome exposed substantial variation in genome size and structure, including detection of ~300 000 structural variants and ~9 million SNPs. A half-diallel derived set of 300 F

Melon plants grafted on Cucurbita rootstock may suffer from nutritional deficiencies due to reduced absorption and translocation of minerals to the foliage. Melon (Cucumis melo L.) cv. 6023 was grafted onto two interspecific Cucurbita rootstocks (Cucurbita maxima × Cucurbita moschata) ‘TZ-148’ and ‘Gad’. Nongrafted melons were used as controls. Two fertilization field experiments were conducted in walk-in tunnels in the northern Arava valley of southern Israel. Two fertigation regimes were used: 1) standard and 2) enriched for magnesium (Mg; 150 mg·L−1), manganese (Mn; 7.5 mg·L−1), and zinc (Zn; 0.75 mg·L−1) to increase the concentrations of the lacking elements. The enriched fertigation significantly increased Mn, Zn, and Mg contents in the leaf tissue. Concentrations of nitrogen (N), phosphorus (P), potassium (K), calcium (Ca), sodium (Na), chloride (Cl), iron (Fe), and boron (B) were unaffected by the enriched fertilizer. There were no deficiency symptoms in grafted plants supplied with the enriched fertilizer.

Fusarium root and stem rot caused by the fungus Fusarium oxysporum f. sp. radicis-cucumerinum is a major disease in greenhouse cucumbers. Over the past decade, the disease has been documented in melon greenhouses in Greece, and recently it has been sporadically recorded in greenhouse melons in Israel. Variations in disease response were found among 41 melon accessions artificially inoculated with the pathogen: 10 accessions were highly susceptible (90–100% mortality), 23 exhibited an intermediate response (20–86%) and eight were resistant (0–4%). Two melon accessions – HEM (highly resistant) and TAD (partially resistant) – were crossed with the susceptible accession DUL. The responses of the three accessions and F1 crosses between the resistant and susceptible parents were evaluated. HEM contributed higher resistance to the F1 hybrid than TAD. Roots of susceptible and resistant accessions were 100 and 79% colonized, respectively, following artificial inoculation. However, only susceptible plants showed colonization of the upper plant tissues. Microscopic evaluation of cross sections taken from the crown region of the susceptible DUL revealed profuse fungal growth in the intercellular spaces of the parenchyma and in xylem vessels. In the resistant cultivar HEM, very little fungal growth was detected in the intercellular spaces of the parenchyma, and none in the xylem or any other vascular tissue. Finding resistant accessions may create an opportunity to study the genetics of resistance inheritance and to develop molecular markers that will facilitate breeding resistant melon cultivars.