118 results on '"Matthew P Muller"'
Search Results
2. The Canadian National Vaccine Safety Network: surveillance of adverse events following immunisation among individuals immunised with the COVID-19 vaccine, a cohort study in Canada
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Gaston De Serres, Manish Sadarangani, Karina A Top, James D Kellner, Allison McGeer, Louis Valiquette, Julie A Bettinger, Otto G Vanderkooi, Matthew P Muller, Jennifer E Isenor, and Kimberly Marty
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Medicine - Published
- 2022
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3. External validation of clinical prediction rules for complications and mortality following Clostridioides difficile infection.
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Catherine Beauregard-Paultre, Claire Nour Abou Chakra, Allison McGeer, Annie-Claude Labbé, Andrew E Simor, Wayne Gold, Matthew P Muller, Jeff Powis, Kevin Katz, Suzanne M Cadarette, Jacques Pépin, and Louis Valiquette
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Medicine ,Science - Abstract
BackgroundSeveral clinical prediction rules (CPRs) for complications and mortality of Clostridioides difficile infection (CDI) have been developed but only a few have gone through external validation, and none is widely recommended in clinical practice.MethodsCPRs were identified through a systematic review. We included studies that predicted severe or complicated CDI (cCDI) and mortality, reported at least an internal validation step, and for which data were available with minimal modifications. Data from a multicenter prospective cohort of 1380 adults with confirmed CDI were used for external validation. In this cohort, cCDI occurred in 8% of the patients and 30-day all-cause mortality occurred in 12%. The performance of each tool was assessed using individual outcomes, with the same cut-offs and standard parameters.ResultsSeven CPRs were assessed. Three predictive scores for cCDI showed low sensitivity (25-61%) and positive predictive value (PPV; 9-31%), but moderate specificity (54-90%) and negative predictive value (NPV; 82-95%). One model [using age, white blood cell count (WBC), narcotic use, antacids use, and creatinine ratio > 1.5× the normal level as covariates] showed a probability of 25% of cCDI at the optimal cut-off point with 36% sensitivity and 84% specificity. Two scores for mortality had low sensitivity (4-55%) and PPV (25-31%), and moderate specificity (71-78%) and NPV (87-92%). One predictive model for 30-day all-cause mortality [Charlson comorbidity index, WBC, blood urea nitrogen (BUN), diagnosis in ICU, and delirium] showed an AUC-ROC of 0.74. All other CPRs showed lower AUC values (0.63-0.69). Errors in calibration ranged from 12%- 27%.ConclusionsIncluded CPRs showed moderate performance for clinical use in a large validation cohort with a majority of patients infected with ribotype 027 strains and a low rate of cCDI and mortality. These data show that better CPRs need to be developed and validated.
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- 2019
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4. A Platelet Reactivity ExpreSsion Score derived from patients with peripheral artery disease predicts cardiovascular risk
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Jeffrey S. Berger, Macintosh G. Cornwell, Yuhe Xia, Matthew A. Muller, Nathaniel R. Smilowitz, Jonathan D. Newman, Florencia Schlamp, Caron B. Rockman, Kelly V. Ruggles, Deepak Voora, Judith S. Hochman, and Tessa J. Barrett
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Science - Abstract
Abstract Platelets are key mediators of atherothrombosis, yet, limited tools exist to identify individuals with a hyperreactive platelet phenotype. In this study, we investigate the association of platelet hyperreactivity and cardiovascular events, and introduce a tool, the Platelet Reactivity ExpreSsion Score (PRESS), which integrates platelet aggregation responses and RNA sequencing. Among patients with peripheral artery disease (PAD), those with a hyperreactive platelet response (>60% aggregation) to 0.4 µM epinephrine had a higher incidence of the 30 day primary cardiovascular endpoint (37.2% vs. 15.3% in those without hyperreactivity, adjusted HR 2.76, 95% CI 1.5–5.1, p = 0.002). PRESS performs well in identifying a hyperreactive phenotype in patients with PAD (AUC [cross-validation] 0.81, 95% CI 0.68 –0.94, n = 84) and in an independent cohort of healthy participants (AUC [validation] 0.77, 95% CI 0.75 –0.79, n = 35). Following multivariable adjustment, PAD individuals with a PRESS score above the median are at higher risk for a future cardiovascular event (adjusted HR 1.90, CI 1.07–3.36; p = 0.027, n = 129, NCT02106429). This study derives and validates the ability of PRESS to discriminate platelet hyperreactivity and identify those at increased cardiovascular risk. Future studies in a larger independent cohort are warranted for further validation. The development of a platelet reactivity expression score opens the possibility for a personalized approach to antithrombotic therapy for cardiovascular risk reduction.
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- 2024
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5. mRNA COVID-19 vaccine safety among children and adolescents: a Canadian National Vaccine Safety Network cohort studyResearch in context
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Phyumar Soe, Otto G. Vanderkooi, Manish Sadarangani, Monika Naus, Matthew P. Muller, James D. Kellner, Karina A. Top, Hubert Wong, Jennifer E. Isenor, Kimberly Marty, Hennady P. Shulha, Gaston De Serres, Louis Valiquette, Allison McGeer, and Julie A. Bettinger
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Vaccine safety monitoring ,Adverse events following immunization ,Myocarditis/pericarditis ,Public aspects of medicine ,RA1-1270 - Abstract
Summary: Background: The Canadian National Vaccine Safety Network conducted active safety surveillance for COVID-19 vaccines. This study aimed to characterize the short-to-medium term safety of mRNA COVID-19 vaccines across the pediatric age spectrum. Methods: In this cohort study, vaccinated and unvaccinated children and adolescents aged 6 months to 19 years from eight Canadian provinces and territories were invited to participate. The outcome was a health event preventing daily activities, resulting in school absenteeism, or requiring medical consultation. Age-stratified multivariable regression models were used to examine health events associated with first and second doses of mRNA COVID-19 vaccines across different age groups: children under 5, children aged 5–11 years and adolescents aged 12–19 years. Findings: From January 2021 through February 2023, a total of 259,361 individuals from the dose one survey, 131,032 from the dose 2 survey, and 1179 from the control survey were included. In the week following dose two, vaccinated adolescents showed a higher proportion of health events [794 (4.6%) of 17,218 BNT162b2 recipients, 98 (8.5%) of 1153 mRNA-1273 recipients, 49 of (10.6%) of 464 heterologous schedule recipients] than unvaccinated adolescents [9 (3.7%) of 242 controls], but most events were self-limited and resolved within 7 days. No significant differences in proportion of health events following mRNA COVID-19 vaccines were observed between vaccinated and unvaccinated groups among adolescents after dose 1, or among children under 5 or those aged 5–11 years after any dose. Reported myocarditis/pericarditis cases within 0–28 days peaked among male adolescents following dose 2, in three of (0.037%) 8088 homologous BNT162b2 recipients, and two of (0.529%) 378 homologous mRNA-1273 recipients. Interpretation: Our findings suggest that reported health events, including myocarditis/pericarditis, vary by pediatric age group. Vaccinated adolescents reported health events more frequently following the second mRNA COVID-19 vaccine dose, while younger age groups did not report events more frequently than their unvaccinated counterparts. Funding: Canadian Immunization Research Network, Canadian Institutes of Health Research; Public Health Agency of Canada; COVID-19 Immunity Task Force.
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- 2024
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6. Removal of endothelial surface-associated von villebrand factor suppresses accelerate datherosclerosis after myocardial infarction
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Koya Ozawa, William Packwood, Matthew A Muller, Yue Qi, Aris Xie, Oleg Varlamov, Owen J. McCarty, Dominic Chung, José A. López, and Jonathan R. Lindner
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Atherosclerosis ,Molecular imaging ,Platelets ,Von Willebrand factor ,Medicine - Abstract
Abstract Background Thromboinflammation involving platelet adhesion to endothelial surface-associated von Willebrand factor (VWF) has been implicated in the accelerated progression of non-culprit plaques after MI. The aim of this study was to use arterial endothelial molecular imaging to mechanistically evaluate endothelial-associated VWF as a therapeutic target for reducing remote plaque activation after myocardial infarction (MI). Methods Hyperlipidemic mice deficient for the low-density lipoprotein receptor and Apobec-1 underwent closed-chest MI and were treated chronically with either: (i) recombinant ADAMTS13 which is responsible for proteolytic removal of VWF from the endothelial surface, (ii) N-acetylcysteine (NAC) which removes VWF by disulfide bond reduction, (iii) function-blocking anti-factor XI (FXI) antibody, or (iv) no therapy. Non-ischemic controls were also studied. At day 3 and 21, ultrasound molecular imaging was performed with probes targeted to endothelial-associated VWF A1-domain, platelet GPIbα, P-selectin and vascular cell adhesion molecule-1 (VCAM-1) at lesion-prone sites of the aorta. Histology was performed at day 21. Results Aortic signal for P-selectin, VCAM-1, VWF, and platelet-GPIbα were all increased several-fold (p 50% (p
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- 2024
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7. Impact of recruitment strategies on individual participation practices in the Canadian National Vaccine Safety Network: prospective cohort study
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Phyumar Soe, Manish Sadarangani, Monika Naus, Matthew P. Muller, Otto G. Vanderkooi, James D. Kellner, Karina A. Top, Hubert Wong, Jennifer E. Isenor, Kimberly Marty, Gaston De Serres, Louis Valiquette, Allison McGeer, Julie A. Bettinger, and for the Canadian Immunization Research Network
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COVID-19 vaccines ,technology-assisted active recruitment ,auto-invitation ,auto-enrollment ,vaccine safety ,Public aspects of medicine ,RA1-1270 - Abstract
BackgroundThe Canadian National Vaccine Safety (CANVAS) network conducted a multi-center, prospective vaccine safety study to collect safety data after dose 1 and 2 of COVID-19 vaccines and follow up safety information 7 months after dose 1.ObjectiveThis study aimed to describe and evaluate the recruitment methods used by CANVAS and the retention of participants by each modality.MethodsCANVAS deployed a multi-pronged recruitment approach to reach a larger sample, without in-person recruitment. Three primary recruitment strategies were used: passive recruitment, technology-assisted electronic invitation through the vaccine booking system (auto-invitation), or auto-registration through the vaccine registries (auto-enrollment).ResultsBetween December 2020 and April 2022, approximately 1.3 million vaccinated adults either self-enrolled or were auto-enrolled in CANVAS, representing about 5% of the vaccinated adult Canadian population. Approximately 1 million participants were auto-enrolled, 300,000 were recruited by auto-invitation, and 5,000 via passive recruitment. Overall survey completion rates for dose 1, dose 2 and the 7-month follow-up surveys were 51.7% (681,198 of 1,318,838), 54.3% (369,552 of 681,198), and 66.4% (452,076 of 681,198), respectively. Completion rates were lower among auto-enrolled participants compared to passively recruited or auto-invited participants who self-enrolled. However, auto-enrolled samples were much larger, which offset the lower completion rates.ConclusionOur data suggest that auto-enrollment provided an opportunity to reach and retain a larger number of individuals in the study compared to other recruitment modalities.
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- 2024
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8. Effects of short-term dietary nitrate supplementation on exercise and coronary blood flow responses in patients with peripheral artery disease
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Danielle Jin-Kwang Kim, Zhaohui Gao, Jonathan C. Luck, Kristen Brandt, Amanda J. Miller, Daniel Kim-Shapiro, Swati Basu, Urs Leuenberger, Andrew W. Gardner, Matthew D. Muller, and David N. Proctor
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dietary nitrate supplementation ,coronary blood flow velocity ,treadmill exercise ,isometric handgrip exercise ,plantar flexion ,peripheral artery disease ,Nutrition. Foods and food supply ,TX341-641 - Abstract
BackgroundPeripheral arterial disease (PAD) is a prevalent vascular disorder characterized by atherosclerotic occlusion of peripheral arteries, resulting in reduced blood flow to the lower extremities and poor walking ability. Older patients with PAD are also at a markedly increased risk of cardiovascular events, including myocardial infarction. Recent evidence indicates that inorganic nitrate supplementation, which is abundant in certain vegetables, augments nitric oxide (NO) bioavailability and may have beneficial effects on walking, blood pressure, and vascular function in patients with PAD.ObjectiveWe sought to determine if short-term nitrate supplementation (via beetroot juice) improves peak treadmill time and coronary hyperemic responses to plantar flexion exercise relative to placebo (nitrate-depleted juice) in older patients with PAD. The primary endpoints were peak treadmill time and the peak coronary hyperemic response to plantar flexion exercise.MethodsEleven PAD patients (52–80 yr.; 9 men/2 women; Fontaine stage II) were randomized (double-blind) to either nitrate-rich (Beet-IT, 0.3 g inorganic nitrate twice/day; BRnitrate) or nitrate-depleted (Beet-IT, 0.04 g inorganic nitrate twice/day, BRplacebo) beetroot juice for 4 to 6 days, followed by a washout of 7 to 14 days before crossing over to the other treatment. Patients completed graded plantar flexion exercise with their most symptomatic leg to fatigue, followed by isometric handgrip until volitional fatigue at 40% of maximum on day 4 of supplementation, and a treadmill test to peak exertion 1–2 days later while continuing supplementation. Hemodynamics and exercise tolerance, and coronary blood flow velocity (CBV) responses were measured.ResultsAlthough peak walking time and claudication onset time during treadmill exercise did not differ significantly between BRplacebo and BRnitrate, the diastolic blood pressure response at the peak treadmill walking stage was significantly lower in the BRnitrate condition. Increases in CBV from baseline to peak plantar flexion exercise after BRplacebo and BRnitrate showed a trend for a greater increase in CBV at the peak workload of plantar flexion with BRnitrate (p = 0.06; Cohen’s d = 0.56).ConclusionOverall, these preliminary findings suggest that inorganic nitrate supplementation in PAD patients is safe, well-tolerated, and may improve the coronary hyperemic and blood pressure responses when their calf muscles are most predisposed to ischemia.Clinical trial registration:https://clinicaltrials.gov/, identifier NCT02553733.
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- 2024
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9. Efficacy of admission screening for extended-spectrum beta-lactamase producing Enterobacteriaceae.
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Christopher F Lowe, Kevin Katz, Allison J McGeer, Matthew P Muller, and Toronto ESBL Working Group
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Medicine ,Science - Abstract
OBJECTIVE: We hypothesized that admission screening for extended-spectrum β-lactamase-producing Enterobacteriaceae (ESBL-E) reduces the incidence of hospital-acquired ESBL-E clinical isolates. DESIGN: Retrospective cohort study. SETTING: 12 hospitals (6 screening and 6 non-screening) in Toronto, Canada. PATIENTS: All adult inpatients with an ESBL-E positive culture collected from 2005-2009. METHODS: Cases were defined as hospital-onset (HO) or community-onset (CO) if cultures were positive after or before 72 hours. Efficacy of screening in reducing HO-ESBL-E incidence was assessed with a negative binomial model adjusting for study year and CO-ESBL-E incidence. The accuracy of the HO-ESBL-E definition was assessed by re-classifying HO-ESBL-E cases as confirmed nosocomial (negative admission screen), probable nosocomial (no admission screen) or not nosocomial (positive admission screen) using data from the screening hospitals. RESULTS: There were 2,088 ESBL-E positive patients and incidence of ESBL-E rose from 0.11 to 0.42 per 1,000 inpatient days between 2005 and 2009. CO-ESBL-E incidence was similar at screening and non-screening hospitals but screening hospitals had a lower incidence of HO-ESBL-E in all years. In the negative binomial model, screening was associated with a 49.1% reduction in HO-ESBL-E (p
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- 2013
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10. The impact of infection on population health: results of the Ontario burden of infectious diseases study.
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Jeffrey C Kwong, Sujitha Ratnasingham, Michael A Campitelli, Nick Daneman, Shelley L Deeks, Douglas G Manuel, Vanessa G Allen, Ahmed M Bayoumi, Aamir Fazil, David N Fisman, Andrea S Gershon, Effie Gournis, E Jenny Heathcote, Frances B Jamieson, Prabhat Jha, Kamran M Khan, Shannon E Majowicz, Tony Mazzulli, Allison J McGeer, Matthew P Muller, Abhishek Raut, Elizabeth Rea, Robert S Remis, Rita Shahin, Alissa J Wright, Brandon Zagorski, and Natasha S Crowcroft
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Medicine ,Science - Abstract
Evidence-based priority setting is increasingly important for rationally distributing scarce health resources and for guiding future health research. We sought to quantify the contribution of a wide range of infectious diseases to the overall infectious disease burden in a high-income setting.We used health-adjusted life years (HALYs), a composite measure comprising premature mortality and reduced functioning due to disease, to estimate the burden of 51 infectious diseases and associated syndromes in Ontario using 2005-2007 data. Deaths were estimated from vital statistics data and disease incidence was estimated from reportable disease, healthcare utilization, and cancer registry data, supplemented by local modeling studies and national and international epidemiologic studies. The 51 infectious agents and associated syndromes accounted for 729 lost HALYs, 44.2 deaths, and 58,987 incident cases per 100,000 population annually. The most burdensome infectious agents were: hepatitis C virus, Streptococcus pneumoniae, Escherichia coli, human papillomavirus, hepatitis B virus, human immunodeficiency virus, Staphylococcus aureus, influenza virus, Clostridium difficile, and rhinovirus. The top five, ten, and 20 pathogens accounted for 46%, 67%, and 75% of the total infectious disease burden, respectively. Marked sex-specific differences in disease burden were observed for some pathogens. The main limitations of this study were the exclusion of certain infectious diseases due to data availability issues, not considering the impact of co-infections and co-morbidity, and the inability to assess the burden of milder infections that do not result in healthcare utilization.Infectious diseases continue to cause a substantial health burden in high-income settings such as Ontario. Most of this burden is attributable to a relatively small number of infectious agents, for which many effective interventions have been previously identified. Therefore, these findings should be used to guide public health policy, planning, and research.
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- 2012
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11. Evaluation of pneumonia severity and acute physiology scores to predict ICU admission and mortality in patients hospitalized for influenza.
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Matthew P Muller, Allison J McGeer, Kazi Hassan, John Marshall, Michael Christian, and Toronto Invasive Bacterial Disease Network
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Medicine ,Science - Abstract
The demand for inpatient medical services increases during influenza season. A scoring system capable of identifying influenza patients at low risk death or ICU admission could help clinicians make hospital admission decisions.Hospitalized patients with laboratory confirmed influenza were identified over 3 influenza seasons at 25 Ontario hospitals. Each patient was assigned a score for 6 pneumonia severity and 2 sepsis scores using the first data available following their registration in the emergency room. In-hospital mortality and ICU admission were the outcomes. Score performance was assessed using the area under the receiver operating characteristic curve (AUC) and the sensitivity and specificity for identifying low risk patients (risk of outcome or=0.80). The Pneumonia Severity Index (AUC 0.78, 95% CI 0.72-0.83) and the Mortality in Emergency Department Sepsis score (AUC 0.77, 95% 0.71-0.83) demonstrated fair predictive ability (AUC>or=0.70) for in-hospital mortality. The best predictor of ICU admission was SMART-COP (AUC 0.73, 95% CI 0.67-0.79). All other scores were poor predictors (AUC
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- 2010
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12. Changes in microvascular perfusion of heart and skeletal muscle in sheep around the time of birth
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Matthew W. Hagen, Samantha Louey, Sarah M. Alaniz, Todd Belcik, Matthew M. Muller, Laura Brown, Jonathan R. Lindner, and Sonnet S. Jonker
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development ,ultrasound ,vascular ,Physiology ,QP1-981 - Abstract
Abstract Microvascular perfusion of striated muscle is an important determinant of health throughout life. Birth is a transition with profound effects on the growth and function of striated muscle, but the regulation of microvascular perfusion around this transition is poorly understood. We used contrast‐enhanced ultrasound perfusion imaging (CEUS) to study the perfusion of left ventricular myocardium and hindlimb biceps femoris, which are populations of muscle with different degrees of change in pre‐ to postnatal workloads and different capacities for postnatal proliferative growth. We studied separate groups of lambs in late gestation (135 days’ gestational age; 92% of term) and shortly after birth (5 days’ postnatal age). We used CEUS to quantify baseline perfusion, perfusion during hyperaemia induced by adenosine infusion (myocardium) or electrically stimulated unloaded exercise (skeletal muscle), flow reserve and oxygen delivery. We found heart‐to‐body weight ratio was greater in neonates than fetuses. Microvascular volume and overall perfusion were lower in neonates than fetuses in both muscle groups at baseline and with hyperaemia. Flux rate differed with muscle group, with myocardial flux being faster in neonates than fetuses, but skeletal muscle flux being slower. Oxygen delivery to skeletal muscle at baseline was lower in neonates than fetuses, but was not significantly different in myocardium. Flow reserve was not different between ages. Given the significant somatic growth, and the transition from hyperplastic to hypertrophic myocyte growth occurring in the perinatal period, we postulate that the primary driver of lower neonatal striated muscle perfusion is faster growth of myofibres than their associated capillary networks.
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- 2023
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13. Detection of SARS-CoV-2 from combined nasal/rectal swabs
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Adriana M. Airo, Kevin R. Barker, Matthew P. Muller, Linda R. Taggart, Karel Boissinot, Ramzi Fattouh, Bridget Tam, and Larissa M. Matukas
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Infectious and parasitic diseases ,RC109-216 ,Public aspects of medicine ,RA1-1270 - Published
- 2023
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14. Letter to the Editor regarding 'Comparison of the intubation success rate between the intubating catheter and videolaryngoscope in difficult airways: a prospective randomized trial.' Braz J Anesthesiol. 2022;72(1):55-62
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Matthew D. Muller
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Anesthesiology ,RD78.3-87.3 - Published
- 2023
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15. Systematic Review on the Cost-Effectiveness of Seasonal Influenza Vaccines in Older Adults
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Desmond, Loong, Ba', Pham, Mohammadreza, Amiri, Hailey, Saunders, Sujata, Mishra, Amruta, Radhakrishnan, Myanca, Rodrigues, Man Wah, Yeung, Matthew P, Muller, Sharon E, Straus, Andrea C, Tricco, and Wanrudee, Isaranuwatchai
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Canada ,Vaccines, Inactivated ,Influenza Vaccines ,Cost-Benefit Analysis ,Health Policy ,Influenza, Human ,Public Health, Environmental and Occupational Health ,Humans ,Seasons ,Aged - Abstract
Older adults are at high risk of influenza-related complications or hospitalization. The purpose of this systematic review is to assess the relative cost-effectiveness of all influenza vaccine options for older adults.This systematic review identified economic evaluation studies assessing the cost-effectiveness of influenza vaccines in adults ≥65 years of age from 5 literature databases. Two reviewers independently selected, extracted, and appraised relevant studies using the JBI Critical Appraisal Checklist for Economic Evaluations and Heyland's generalizability checklist. Costs were converted to 2019 Canadian dollars and adjusted for inflation and purchasing power parity.A total of 27 studies were included. There were 18 comparisons of quadrivalent inactivated vaccine (QIV) versus trivalent inactivated vaccine (TIV): 5 showed QIV dominated TIV (ie, lower costs and higher health benefit), and 13 showed the results depended on willingness to pay (WTP). There were 9 comparisons of high-dose TIV (TIV-HD) versus TIV: 5 showed TIV-HD dominated TIV, and 4 showed the results depended on WTP. There were 8 comparisons of adjuvanted TIV (TIV-ADJ) versus TIV: 4 showed TIV-ADJ dominated TIV, and 4 showed the results depended on WTP. There were few pairwise comparisons among QIV, TIV-HD, and TIV-ADJ.The evidence suggests QIV, TIV-HD, and TIV-ADJ are cost-effective against TIV for a WTP threshold of $50 000 per quality-adjusted life-year. Future studies should include new and existing vaccine options for broad age ranges and use more robust methodologies-such as real-world evaluations or modeling studies accounting for methodological, structural, and parameter uncertainty.
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- 2022
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16. Impact of COVID-19 on hospital hand hygiene performance: a multicentre observational study using group electronic monitoring
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Victoria Williams, Adam Kovacs-Litman, Matthew P. Muller, Susy Hota, Jeff E. Powis, Daniel R. Ricciuto, Dominik Mertz, Kevin Katz, Lucas Castellani, Alex Kiss, Amber Linkenheld-Struk, and Jerome A. Leis
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Infection Control ,Research ,Health Personnel ,COVID-19 ,Humans ,Hand Hygiene ,Public Health Surveillance ,General Medicine ,Health Impact Assessment ,Hospitals - Abstract
Background: Reliable reports on hand hygiene performance throughout the COVID-19 pandemic are lacking as most hospitals continue to rely on direct observation to measure this quality indicator. Using group electronic hand hygiene monitoring, we sought to assess the impact of COVID-19 on adherence to hand hygiene. Methods: Across 12 Ontario hospitals (5 university and 7 community teaching hospitals), a group electronic hand hygiene monitoring system was installed before the pandemic to provide continuous measurement of hand hygiene adherence across 978 ward and 367 critical care beds. We performed an interrupted time-series study of institutional hand hygiene adherence in association with a COVID-19 inpatient census and the Ontario daily count of COVID-19 cases during a baseline period (Nov. 1, 2019, to Feb. 29, 2020), the pre-peak period of the first wave of the pandemic (Mar. 1 to Apr. 24, 2020), and the post-peak period of the first wave (Apr. 25 to July 5, 2020). We used a Poisson regression model to assess the association between the hospital COVID-19 census and institutional hand hygiene adherence while adjusting for the correlation within inpatient units. Results: At baseline, the rate of hand hygiene adherence was 46.0% (6 325 401 of 13 750 968 opportunities) and this improved beginning in March 2020 to a daily peak of 79.3% (66 640 of 84 026 opportunities) on Mar. 30, 2020. Each patient admitted with COVID-19 was associated with improved hand hygiene adherence (incidence rate ratio [IRR] 1.0621, 95% confidence interval [CI] 1.0619–1.0623). Increasing Ontario daily case count was similarly associated with improved hand hygiene (IRR 1.0026, 95% CI 1.0021–1.0032). After peak COVID-19 community and inpatient numbers, hand hygiene adherence declined and returned to baseline. Interpretation: The first wave of the COVID-19 pandemic was associated with significant improvement in hand hygiene adherence, measured using a group electronic monitoring system. Future research should seek to determine whether strategies that focus on health care worker perception of personal risk can achieve sustainable improvements in hand hygiene performance.
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- 2021
17. Comparative-effectiveness research of COVID-19 treatment: a rapid scoping review
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Ba Pham, Patricia Rios, Amruta Radhakrishnan, Nazia Darvesh, Jesmin Antony, Chantal Williams, Naveeta Ramkissoon, Gordon V Cormack, Maura R Grossman, Melissa Kampman, Milan Patel, Fatemeh Yazdi, Reid Robson, Marco Ghassemi, Erin Macdonald, Rachel Warren, Matthew P Muller, Sharon E Straus, and Andrea C Tricco
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Immunization, Passive ,COVID-19 ,General Medicine ,Middle Aged ,Antiviral Agents ,COVID-19 Drug Treatment ,Antimalarials ,Humans ,Child ,Pandemics ,Immunosuppressive Agents ,COVID-19 Serotherapy ,Aged ,Hydroxychloroquine ,Randomized Controlled Trials as Topic - Abstract
ObjectivesThe COVID-19 pandemic has stimulated growing research on treatment options. We aim to provide an overview of the characteristics of studies evaluating COVID-19 treatment.DesignRapid scoping reviewData sourcesMedline, Embase and biorxiv/medrxiv from inception to 15 May 2021.SettingHospital and community care.ParticipantsCOVID-19 patients of all ages.InterventionsCOVID-19 treatment.ResultsThe literature search identified 616 relevant primary studies of which 188 were randomised controlled trials and 299 relevant evidence syntheses. The studies and evidence syntheses were conducted in 51 and 39 countries, respectively.Most studies enrolled patients admitted to acute care hospitals (84%), included on average 169 participants, with an average age of 60 years, study duration of 28 days, number of effect outcomes of four and number of harm outcomes of one. The most common primary outcome was death (32%).The included studies evaluated 214 treatment options. The most common treatments were tocilizumab (11%), hydroxychloroquine (9%) and convalescent plasma (7%). The most common therapeutic categories were non-steroidal immunosuppressants (18%), steroids (15%) and antivirals (14%). The most common therapeutic categories involving multiple drugs were antimalarials/antibiotics (16%), steroids/non-steroidal immunosuppressants (9%) and antimalarials/antivirals/antivirals (7%). The most common treatments evaluated in systematic reviews were hydroxychloroquine (11%), remdesivir (8%), tocilizumab (7%) and steroids (7%).The evaluated treatment was in favour 50% and 36% of the evaluations, according to the conclusion of the authors of primary studies and evidence syntheses, respectively.ConclusionsThis rapid scoping review characterised a growing body of comparative-effectiveness primary studies and evidence syntheses. The results suggest future studies should focus on children, elderly ≥65 years of age, patients with mild symptoms, outpatient treatment, multimechanism therapies, harms and active comparators. The results also suggest that future living evidence synthesis and network meta-analysis would provide additional information for decision-makers on managing COVID-19.
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- 2022
18. Beyond flu: Trends in respiratory infection outbreaks in Ontario healthcare settings from 2007 to 2017, and implications for non-influenza outbreak management
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Herveen Sachdeva, Jonathan B. Gubbay, Michael Whelan, Michelle Murti, Kevin Katz, Sandra Callery, Katherine Paphitis, Gary Garber, Camille Achonu, Bryna Warshawsky, and Matthew P. Muller
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medicine.medical_specialty ,morbidity ,Infectious and parasitic diseases ,RC109-216 ,health facilities ,Human metapneumovirus ,Environmental health ,Case fatality rate ,Health care ,Medicine ,human ,biology ,business.industry ,Public health ,Respiratory infection ,Outbreak ,General Medicine ,metapneumovirus ,biology.organism_classification ,Long-term care ,disease outbreaks ,Healthcare settings ,long-term care ,influenza ,business - Abstract
Background: Outbreaks cause significant morbidity and mortality in healthcare settings. Current testing methods can identify specific viral respiratory pathogens, yet the approach to outbreak management remains general. Objectives: Our aim was to examine pathogen-specific trends in respiratory outbreaks, including how attack rates, case fatality rates and outbreak duration differ by pathogen between hospitals and long-term care (LTC) and retirement homes (RH) in Ontario. Methods: Confirmed respiratory outbreaks in Ontario hospitals and LTC/RH reported between September 1, 2007, and August 31, 2017, were extracted from the integrated Public Health Information System (iPHIS). Median attack rates and outbreak duration and overall case fatality rates of pathogen-specific outbreaks were compared in both settings. Results: Over the 10-year surveillance period, 9,870 confirmed respiratory outbreaks were reported in Ontario hospitals and LTC/RH. Influenza was responsible for most outbreaks (32% in LTC/RH, 51% in hospitals), but these outbreaks were shorter and had lower attack rates than most non-influenza outbreaks in either setting. Human metapneumovirus, while uncommon (
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- 2021
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19. Au-delà de la grippe : Tendances des éclosions d’infections respiratoires dans les établissements de soins de santé de l’Ontario de 2007 à 2017, et implications pour la gestion des éclosions non grippales
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Katherine Paphitis, Herveen Sachdeva, Gary Garber, Bryna Warshawsky, Sandra Callery, Michelle Murti, Camille Achonu, Kevin Katz, Michael Whelan, Matthew P. Muller, and Jonathan B. Gubbay
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grippe ,métapneumovirus ,établissements de soins de santé ,morbidité ,General Medicine ,éclosions d’une maladie ,Infectious and parasitic diseases ,RC109-216 ,établissement de soins de longue durée ,humain - Abstract
Contexte : Les éclosions provoquent une morbidité et une mortalité importantes dans les établissements de soins de santé. Les méthodes de dépistage actuelles permettent de cerner des agents pathogènes respiratoires viraux spécifiques, mais l’approche de la gestion des éclosions reste générale. Objectifs : Notre objectif était d’examiner les tendances spécifiques aux agents pathogènes dans les éclosions respiratoires, y compris la façon dont le taux d’attaque, le taux de létalité et la durée de l’éclosion diffèrent par agent pathogène entre les hôpitaux, et les établissements de soins de longue durée et les maisons de retraite en Ontario. Méthodes : Les éclosions d’infections respiratoires confirmées dans les hôpitaux et les établissements de soins de longue durée ou les maisons de retraite de l’Ontario signalées entre le 1er septembre 2007 et le 31 août 2017 ont été extraites du Système intégré d’information sur la santé publique (SIISP). Les taux d’attaque médians, la durée des éclosions et les taux généraux de létalité des éclosions spécifiques à un pathogène ont été comparés dans les deux types d’établissements. Résultats : Au cours de la période de surveillance de 10 ans, 9 870 éclosions respiratoires confirmées ont été signalées dans les hôpitaux et les établissements de soins de longue durée ou les maisons de retraite de l’Ontario. La grippe était à l’origine de la plupart des éclosions (32 % dans les établissements de soins de longue durée et les maisons de retraite, 51 % dans les hôpitaux), mais ces éclosions étaient plus courtes et présentaient des taux d’attaque inférieurs à ceux de la plupart des éclosions non grippales dans les deux types d’établissements. Le métapneumovirus humain, bien que peu fréquent (moins de 4 % des éclosions), présentait des taux de létalité élevés dans les deux types d’établissements. Conclusion : Les taux d’attaque et les taux de létalité variaient selon l’agent pathogène, tout comme la durée de l’éclosion. L’élaboration de conseils propres à la gestion des éclosions, qui tiennent compte de l’agent pathogène et de l’établissement de soins de santé, pourrait être utile pour limiter la charge des éclosions respiratoires.
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- 2021
20. Post-exposure prophylaxis against SARS-CoV-2 in close contacts of confirmed COVID-19 cases (CORIPREV): study protocol for a cluster-randomized trial
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Todd C. Lee, Nick Daneman, Matthew P. Muller, Darrell H. S. Tan, Peter Jüni, Allison McGeer, Srinivas Murthy, Rob Fowler, Tony Mazzulli, George Tomlinson, Sharon Walmsley, Natasha Press, Adrienne K. Chan, and Curtis Cooper
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Relative risk reduction ,medicine.medical_specialty ,Medicine (miscellaneous) ,Lopinavir/ritonavir ,Chemoprophylaxis ,Antiviral Agents ,Severity of Illness Index ,Post-exposure prophylaxis ,Lopinavir ,law.invention ,Study Protocol ,03 medical and health sciences ,0302 clinical medicine ,Randomized controlled trial ,law ,Internal medicine ,medicine ,Protocol ,Humans ,Pharmacology (medical) ,030212 general & internal medicine ,Cluster randomised controlled trial ,Randomized Controlled Trials as Topic ,0303 health sciences ,lcsh:R5-920 ,Ritonavir ,SARS-CoV-2 ,030306 microbiology ,business.industry ,COVID-19 ,3. Good health ,Hospitalization ,Drug Combinations ,Treatment Outcome ,Sample size determination ,Cluster randomization ,business ,lcsh:Medicine (General) ,medicine.drug - Abstract
BackgroundPost-exposure prophylaxis (PEP) is a well-established strategy for the prevention of infectious diseases, in which recently exposed people take a short course of medication to prevent infection. The primary objective of the COVID-19 Ring-based Prevention Trial with lopinavir/ritonavir (CORIPREV-LR) is to evaluate the efficacy of a 14-day course of oral lopinavir/ritonavir as PEP against COVID-19 among individuals with a high-risk exposure to a confirmed case.MethodsThis is an open-label, multicenter, 1:1 cluster-randomized trial of LPV/r 800/200 mg twice daily for 14 days (intervention arm) versus no intervention (control arm), using an adaptive approach to sample size calculation. Participants will be individuals aged > 6 months with a high-risk exposure to a confirmed COVID-19 case within the past 7 days. A combination of remote and in-person study visits at days 1, 7, 14, 35, and 90 includes comprehensive epidemiological, clinical, microbiologic, and serologic sampling. The primary outcome is microbiologically confirmed COVID-19 infection within 14 days after exposure, defined as a positive respiratory tract specimen for SARS-CoV-2 by polymerase chain reaction. Secondary outcomes include safety, symptomatic COVID-19, seropositivity, hospitalization, respiratory failure requiring ventilator support, mortality, psychological impact, and health-related quality of life. Additional analyses will examine the impact of LPV/r on these outcomes in the subset of participants who test positive for SARS-CoV-2 at baseline. To detect a relative risk reduction of 40% with 80% power atα = 0.05, assuming the secondary attack rate in ring members (p0) = 15%, 5 contacts per case and intra-class correlation coefficient (ICC) = 0.05, we require 110 clusters per arm, or 220 clusters overall and approximately 1220 enrollees after accounting for 10% loss-to-follow-up. We will modify the sample size target after 60 clusters, based on preliminary estimates ofp0, ICC, and cluster size and consider switching to an alternative drug after interim analyses and as new data emerges. The primary analysis will be a generalized linear mixed model with logit link to estimate the effect of LPV/r on the probability of infection. Participants who test positive at baseline will be excluded from the primary analysis but will be maintained for additional analyses to examine the impact of LPV/r on early treatment.DiscussionHarnessing safe, existing drugs such as LPV/r as PEP could provide an important tool for control of the COVID-19 pandemic. Novel aspects of our design include the ring-based prevention approach, and the incorporation of remote strategies for conducting study visits and biospecimen collection.Trial registrationThis trial was registered atwww.ClinicalTrials.gov(NCT04321174) on March 25, 2020.
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- 2021
21. Association Between Hospital Outbreaks and Hand Hygiene: Insights from Electronic Monitoring
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Adam Kovacs-Litman, Jeff Powis, Victoria Williams, Jerome A. Leis, Allison McGeer, Matthew P. Muller, Daniel R. Ricciuto, and Alex Kiss
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Microbiology (medical) ,medicine.medical_specialty ,media_common.quotation_subject ,Psychological intervention ,030501 epidemiology ,Disease Outbreaks ,03 medical and health sciences ,Patient safety ,symbols.namesake ,0302 clinical medicine ,Hygiene ,Inpatient units ,Humans ,Medicine ,Hand Hygiene ,Prospective Studies ,030212 general & internal medicine ,Poisson regression ,media_common ,Cross Infection ,Infection Control ,business.industry ,Outbreak ,Interrupted time series ,Hospitals ,Infectious Diseases ,Wireless signal ,Emergency medicine ,symbols ,Guideline Adherence ,Electronics ,0305 other medical science ,business - Abstract
Background Hand hygiene (HH) is an important patient safety measure linked to the prevention of health care-associated infection, yet how outbreaks affect HH performance has not been formally evaluated. Methods A controlled, interrupted time series was performed across 5 acute-care academic hospitals using group electronic monitoring. This system captures 100% of all hand sanitizer and soap dispenser activations via a wireless signal to a wireless hub; the number of activations is divided by a previously validated estimate of the number of daily HH opportunities per patient bed, multiplied by the hourly census of patients on the unit. Daily HH adherence 60 days prior and 90 days following outbreaks on inpatient units was compared to control units not in outbreaks over the same period, using a Poisson regression model adjusting for correlations within hospitals and units. Predictors of HH improvement were assessed in this multivariate model. Results In the 60 days prior to outbreaks, units destined for outbreaks had significantly lower HH adherence compared to control units (incidence rate ratio [IRR], 0.91; 95% confidence interval [CI], .90–.93; P Conclusions Hospital outbreaks tend to occur in units with lower HH adherence and are associated with rapid improvements in HH performance. Group electronic monitoring of HH could be used to develop novel, prospective feedback interventions designed to avert hospital outbreaks.
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- 2020
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22. Preventing the transmission of COVID-19 and other coronaviruses in older adults aged 60 years and above living in long-term care: a rapid review
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Andrea C. Tricco, Chantal Williams, Sharon E. Straus, Maura R. Grossman, Gordon V. Cormack, Patricia Rios, Ba' Pham, Amruta Radhakrishnan, Matthew P. Muller, and Naveeta Ramkissoon
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Clinical guidelines ,medicine.medical_specialty ,020205 medical informatics ,Pneumonia, Viral ,MEDLINE ,Medicine (miscellaneous) ,lcsh:Medicine ,02 engineering and technology ,Cochrane Library ,Severe Acute Respiratory Syndrome ,03 medical and health sciences ,Betacoronavirus ,Long-term care ,0302 clinical medicine ,Assisted Living Facilities ,Pandemic ,0202 electrical engineering, electronic engineering, information engineering ,medicine ,Infection control ,Humans ,Hand Hygiene ,030212 general & internal medicine ,Personal protective equipment ,Pandemics ,Personal Protective Equipment ,Aged ,Skilled Nursing Facilities ,Infection Control ,business.industry ,SARS-CoV-2 ,Research ,lcsh:R ,COVID-19 ,Middle Aged ,Nursing Homes ,Knowledge synthesis ,Clinical trial ,Disinfection ,Family medicine ,Older adults ,Sick leave ,Practice Guidelines as Topic ,Sick Leave ,business ,Coronavirus Infections - Abstract
Background The objective of this review was to examine the current guidelines for infection prevention and control (IPAC) of coronavirus disease-19 (COVID-19) or other coronaviruses in adults 60 years or older living in long-term care facilities (LTCF). Methods EMBASE, MEDLINE, Cochrane library, pre-print servers, clinical trial registries, and relevant grey literature sources were searched until July 31, 2020, using database searching and an automated method called Continuous Active Learning® (CAL®). All search results were processed using CAL® to identify the most likely relevant citations that were then screened by a single human reviewer. Full-text screening, data abstraction, and quality appraisal were completed by a single reviewer and verified by a second. Results Nine clinical practice guidelines (CPGs) were included. The most common recommendation in the CPGs was establishing surveillance and monitoring systems followed by mandating the use of PPE; physically distancing or cohorting residents; environmental cleaning and disinfection; promoting hand and respiratory hygiene among residents, staff, and visitors; and providing sick leave compensation for staff. Conclusions Current evidence suggests robust surveillance and monitoring along with support for IPAC initiatives are key to preventing the spread of COVID-19 in LTCF. However, there are significant gaps in the current recommendations especially with regard to the movement of staff between LTCF and their role as possible transmission vectors. Systematic review registration PROSPERO CRD42020181993
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- 2020
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23. Estimated surge in hospital and intensive care admission because of the coronavirus disease 2019 pandemic in the Greater Toronto Area, Canada: a mathematical modelling study
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Linwei Wang, J. Michael Paterson, Matthew P. Muller, Victoria Pequegnat, Michael J. Schull, Sharmistha Mishra, Huiting Ma, David Landsman, Eric A. Coomes, Sharon E. Straus, Adrienne K. Chan, Mark Downing, Anthea Lee, Lisa Ishiguro, Kristy C. Y. Yiu, and Eliane Kim
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Canada ,medicine.medical_specialty ,Coronavirus disease 2019 (COVID-19) ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Pandemic ,Health care ,Epidemiology ,Humans ,Medicine ,Surge ,Health Services Needs and Demand ,Inpatients ,Inpatient care ,SARS-CoV-2 ,business.industry ,Research ,Surge Capacity ,COVID-19 ,General Medicine ,Models, Theoretical ,Census ,Hospitals ,Hospitalization ,Intensive Care Units ,Emergency medicine ,business ,Forecasting - Abstract
BACKGROUND: In pandemics, local hospitals need to anticipate a surge in health care needs. We examined the modelled surge because of the coronavirus disease 2019 (COVID-19) pandemic that was used to inform the early hospital-level response against cases as they transpired. METHODS: To estimate hospital-level surge in March and April 2020, we simulated a range of scenarios of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spread in the Greater Toronto Area (GTA), Canada, using the best available data at the time. We applied outputs to hospital-specific data to estimate surge over 6 weeks at 2 hospitals (St. Michael’s Hospital and St. Joseph’s Health Centre). We examined multiple scenarios, wherein the default (R(0) = 2.4) resembled the early trajectory (to Mar. 25, 2020), and compared the default model projections with observed COVID-19 admissions in each hospital from Mar. 25 to May 6, 2020. RESULTS: For the hospitals to remain below non-ICU bed capacity, the default pessimistic scenario required a reduction in non-COVID-19 inpatient care by 38% and 28%, respectively, with St. Michael’s Hospital requiring 40 new ICU beds and St. Joseph’s Health Centre reducing its ICU beds for non-COVID-19 care by 6%. The absolute difference between default-projected and observed census of inpatients with COVID-19 at each hospital was less than 20 from Mar. 25 to Apr. 11; projected and observed cases diverged widely thereafter. Uncertainty in local epidemiological features was more influential than uncertainty in clinical severity. INTERPRETATION: Scenario-based analyses were reliable in estimating short-term cases, but would require frequent re-analyses. Distribution of the city’s surge was expected to vary across hospitals, and community-level strategies were key to mitigating each hospital’s surge.
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- 2020
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24. Introduction of Group Electronic Monitoring of Hand Hygiene on Inpatient Units: A Multicenter Cluster Randomized Quality Improvement Study
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Shara Junaid, Sajeetha Sivaramakrishna, Natasha Salt, Xinghan Cao, Christine Moore, Natalie Coyle, Allison McGeer, Jerome A. Leis, Daniel R. Ricciuto, Louis Wong, Tanya Agnihotri, Victoria Williams, Liz McCreight, Matthew P. Muller, and Jeff Powis
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Microbiology (medical) ,medicine.medical_specialty ,Quality management ,business.industry ,media_common.quotation_subject ,Direct observation ,030501 epidemiology ,Disease cluster ,Rate ratio ,Confidence interval ,03 medical and health sciences ,0302 clinical medicine ,Infectious Diseases ,Hygiene ,Acute care ,Emergency medicine ,Inpatient units ,medicine ,030212 general & internal medicine ,0305 other medical science ,business ,media_common - Abstract
Background The current approach to measuring hand hygiene (HH) relies on human auditors who capture Methods A stepped-wedge cluster randomized quality improvement study was performed on 26 inpatient medical and surgical units across 5 acute care hospitals in Ontario, Canada. The intervention involved daily HH reporting as measured by group electronic monitoring to guide unit-led improvement strategies. The primary outcome was monthly HH adherence (percentage) between baseline and intervention. Secondary outcomes included transmission of antibiotic-resistant organisms such as methicillin-resistant Staphylococcus aureus (MRSA) and other healthcare-associated infections. Results After adjusting for the correlation within inpatient units and hospitals, there was a significant overall improvement in HH adherence associated with the intervention (incidence rate ratio [IRR], 1.73 [95% confidence interval {CI}, 1.47–1.99]; P Conclusions The introduction of a system for group electronic monitoring led to rapid, significant improvements in HH performance within a 2-year period. This method offers significant advantages over direct observation for measurement and improvement of HH.
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- 2020
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25. The Canadian National Vaccine Safety Network: surveillance of adverse events following immunisation among individuals immunised with the COVID-19 vaccine, a cohort study in Canada
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Julie A Bettinger, Manish Sadarangani, Gaston De Serres, Louis Valiquette, Otto G Vanderkooi, James D Kellner, Matthew P Muller, Karina A Top, Jennifer E Isenor, Allison McGeer, and Kimberly Marty
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Vaccines ,COVID-19 Vaccines ,Epidemiology ,SARS-CoV-2 ,education ,public health ,statistics & research methods ,Vaccination ,COVID-19 ,General Medicine ,Alberta ,Cohort Studies ,Pregnancy ,Humans ,Medicine ,Female ,Child - Abstract
IntroductionCOVID-19 vaccines require enhanced safety monitoring after emergency approval. The Canadian National Vaccine Safety Network monitors the safety of COVID-19 vaccines and provides enhanced monitoring for healthy, auto-immune, immunocompromised, pregnant and breastfeeding populations and allows for the detection of safety signals.Methods and analysisOnline participant reporting of health events in vaccinated and unvaccinated individuals 12 years of age and older is captured in three surveys: 1 week after dose 1, 1 week after dose 2 and 7 months after dose 1. Medically attended events are followed up by telephone. The number, percentage, rate per 10 000 and incident rate ratios with 95% CIs are calculated by health event, vaccine type, sex and in 10-year age groups.Ethics and disseminationEach study site has Research Ethics Board approvals for the project (UBC Children’s & Women’s, CIUSSS de l'Estrie—CHUS, Health PEI, Conjoint Health Research Ethics Board, University of Calgary and Alberta Health Services, IWK Health, Unity Health Toronto and CHU de Québec-Université Laval Research Ethics Boards). Individuals are invited to participate in this active surveillance and electronic consent is given before proceeding to each survey. Weekly reports are shared with public health and posted on the study website. At least one peer-reviewed manuscript is produced.
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- 2022
26. Fourier Transform Infrared Spectroscopy for Typing Burkholderia cenocepacia ET12 Isolates
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Kevin R. Barker, Michael Santino, John J. LiPuma, Elizabeth Tullis, Matthew P. Muller, Larissa M. Matukas, and Manal Tadros
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Microbiology (medical) ,Cystic Fibrosis ,Burkholderia ,Burkholderia cenocepacia ,Physiology ,Pilot Projects ,Microbiology ,Bacterial Proteins ,Spectroscopy, Fourier Transform Infrared ,Genetics ,Humans ,Respiratory Tract Infections ,mass spectrometry ,outbreak ,General Immunology and Microbiology ,Ecology ,Polysaccharides, Bacterial ,typing ,Fourier transform infrared spectroscopy ,Cell Biology ,ET12 ,QR1-502 ,Bacterial Typing Techniques ,ClinProTools ,Infectious Diseases ,FTIR ,Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ,Research Article - Abstract
The IR Biotyper and matrix-assisted laser desorption ionization–time of flight mass spectrometry (MALDI-TOF MS) using ClinProTools software (MALDI-TOF MS–ClinProTools) are two novel typing methods that rely on the analysis of carbohydrate and peptide residues in intact bacterial cells. These two methods have shown promising results in the rapid and accurate typing of bacteria. In this study, we evaluated these novel typing methods in comparison with genotypic typing for cluster analysis of Burkholderia cenocepacia epidemic strain ET12, isolated from adult cystic fibrosis patients. Sixty-six isolates of B. cenocepacia were used in this study, 35 of which were identified as the ET12 strain and 31 as non-ET12 strains by repetitive-element PCR (rep-PCR). Twelve isolates were used for the creation of typing models using IR Biotyper and MALDI-TOF MS–ClinProTools, and 54 isolates were used for external validation of the typing models. The IR Biotyper linear discriminant analysis (LDA) model had a diagnostic sensitivity of 84.6% for typing the epidemic strain, ET12. At a cutoff of 70%, MALDI-TOF MS–ClinProTools had 87.5% diagnostic sensitivity in detecting the ET12 strain (P = 1.00). Both methods had a diagnostic specificity of ≥80% for detecting the ET12 strain. In conclusion, IR Biotyper and MALDI-TOF MS–ClinProTools offer rapid typing using proteomics and analysis of small cellular molecules with a low running cost. Our pilot study showed suboptimal accuracy of both methods for typing outbreak strains of B. cenocepacia. Extending the spectral region analyzed by the IR Biotyper can improve the accuracy and has the potential of improving the generalizability of this technique for typing other organisms. IMPORTANCE Respiratory infections due to Burkholderia cenocepacia, particularly the ET12 epidemic strain, are considered sentinel events for persons with cystic fibrosis, as they are often associated with person-to-person transmission and accelerated decline in lung function and early mortality. Current typing methods are generally only available at reference centers, with long turn-around-times, which can affect the identification of outbreaks and critical patient triage. This pilot study aims to add to the growing literature illustrating the potential utility of Fourier transform infrared spectroscopy (FTIR), a novel rapid method, for the successful typing of clinically significant bacteria. In this study, we evaluated its utility to discriminate between the ET12 clone and non-ET12 isolates of B. cenocepacia and compared it to proteomics cluster analysis using MALDI-TOF MS and ClinProTools software. Both methods had encouraging but suboptimal accuracy (≥85% sensitivity and ≥83% specificity), which will likely be improved by extending the spectral region analyzed by the IR Biotyper with updated software.
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- 2021
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27. Coronavirus disease 2019 (COVID-19) risk among healthcare workers performing nasopharyngeal testing
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Kevin L Schwartz, Victoria Williams, Robin Harry, Sonya Booker, Kevin Katz, Jerome A. Leis, and Matthew P. Muller
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Microbiology (medical) ,2019-20 coronavirus outbreak ,Coronavirus disease 2019 (COVID-19) ,Epidemiology ,business.industry ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Health Personnel ,COVID-19 ,Research Brief ,Virology ,Infectious Diseases ,Nasopharynx ,Health care ,Medicine ,Humans ,business - Published
- 2021
28. Which healthcare workers work with acute respiratory illness? Evidence from Canadian acute-care hospitals during 4 influenza seasons: 2010–2011 to 2013–2014
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Jeff Powis, Allison McGeer, Matthew P. Muller, Brenda L. Coleman, Mark Loeb, Julia M Di Bella, Shelly McNeil, Kevin Katz, Lili Jiang, Philipp Kohler, and Andrew E. Simor
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Adult ,Male ,Microbiology (medical) ,Canada ,medicine.medical_specialty ,Epidemiology ,Health Personnel ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Acute care ,Absenteeism ,Influenza, Human ,Health care ,Disease Transmission, Infectious ,medicine ,Humans ,Prospective Studies ,030212 general & internal medicine ,Young adult ,Prospective cohort study ,Aged ,0303 health sciences ,030306 microbiology ,business.industry ,Incidence (epidemiology) ,Middle Aged ,Infectious Diseases ,Population Surveillance ,Relative risk ,Acute Disease ,Sick leave ,Emergency medicine ,Female ,Seasons ,Respiratory Insufficiency ,business - Abstract
Background:Healthcare workers (HCWs) are at risk of acquiring and transmitting respiratory viruses while working in healthcare settings.Objectives:To investigate the incidence of and factors associated with HCWs working during an acute respiratory illness (ARI).Methods:HCWs from 9 Canadian hospitals were prospectively enrolled in active surveillance for ARI during the 2010–2011 to 2013–2014 influenza seasons. Daily illness diaries during ARI episodes collected information on symptoms and work attendance.Results:At least 1 ARI episode was reported by 50.4% of participants each study season. Overall, 94.6% of ill individuals reported working at least 1 day while symptomatic, resulting in an estimated 1.9 days of working while symptomatic and 0.5 days of absence during an ARI per participant season. In multivariable analysis, the adjusted relative risk of working while symptomatic was higher for physicians and lower for nurses relative to other HCWs. Participants were more likely to work if symptoms were less severe and on the illness onset date compared to subsequent days. The most cited reason for working while symptomatic was that symptoms were mild and the HCW felt well enough to work (67%). Participants were more likely to state that they could not afford to stay home if they did not have paid sick leave and were younger.Conclusions:HCWs worked during most episodes of ARI, most often because their symptoms were mild. Further data are needed to understand how best to balance the costs and risks of absenteeism versus those associated with working while ill.
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- 2019
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29. Province-Wide Prevalence Testing for SARS-CoV-2 of In-Center Hemodialysis Patients and Staff in Ontario, Canada: A Cross-Sectional Study
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Matthew J. Oliver, James K. H. Jung, Matthew P. Muller, Angie Yeung, Phil McFarlane, Jerome A. Leis, Philip Holm, Vlad Padure, Peter G. Blake, Leena Taji, Daphne C. Sniekers, and Rebecca Cooper
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medicine.medical_specialty ,2019-20 coronavirus outbreak ,Original Basic Research ,Coronavirus disease 2019 (COVID-19) ,Cross-sectional study ,business.industry ,medicine.medical_treatment ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,COVID-19 ,chronic population surveillance ,Diseases of the genitourinary system. Urology ,kidney failure ,Nephrology ,renal dialysis ,Emergency medicine ,medicine ,RC870-923 ,Hemodialysis ,business ,Ontario canada - Abstract
Background: People receiving in-center hemodialysis face a high risk for contracting severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and experience poor outcomes. During the first wave of the coronavirus disease 2019 (COVID-19) pandemic in Ontario (between March and June 2020), it was unclear whether asymptomatic or presymptomatic cases were common and whether widespread testing of all dialysis patients and staff would identify cases earlier and prevent transmission. Ontario has a population of about 14.5 million. Approximately 8900 people receive dialysis across 102 in-center dialysis units. Objective: The objective of this study was to determine participation rates for patients and staff in point prevalence testing in dialysis units across the province and to determine the prevalence of asymptomatic or presymptomatic infection. Design: Cross-sectional study design. Setting: In-center hemodialysis units at 27 renal programs across Ontario. Participants: Patients and staff in in-center dialysis units in Ontario. Measurements: Participation rates, demographic data, SARS-CoV-2 positivity rates, and COVID-19-related symptom data. Methods: From June 8 to 30, 2020, all in-center dialysis patients and staff in the Province of Ontario were requested to undergo a symptom screening assessment and nasopharyngeal swab. Testing was done using polymerase chain reaction to detect SARS-CoV-2. A standardized questionnaire of atypical and typical COVID-19-related symptoms was administered to patients, to assess for new or worsening COVID-19-related symptoms. Results: Patient participation was 83% (7155 of 8612) of which 15 tests were positive: less than 5 (Limitations: As point prevalence testing was voluntary, not all patients and staff participated. Lower participation rate may be due to decreasing new cases in Ontario, and testing or pandemic fatigue, among other factors. This study did not use serology to identify prior infections because it was not widely available in Ontario. With respect to the standardized symptom questionnaire, it was only available in English and French and could not be tested due to the urgency of the initiative. Conclusions: Participation among patients in point prevalence testing was good, but participation among staff was relatively low. Asymptomatic positivity in the dialysis patient and staff population was rare during the first wave of the COVID-19 pandemic in Ontario.
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- 2021
30. Reply to Cawthorne and Cooke
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Matthew P. Muller and Jerome A. Leis
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Microbiology (medical) ,Infectious Diseases ,business.industry ,Medicine ,business ,Classics - Published
- 2021
31. Dissemination of Verona Integron-encoded Metallo-β-lactamase among clinical and environmental Enterobacteriaceae isolates in Ontario, Canada
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Alicia Sarabia, Hyunjin C. Kim, Thomas A. Edge, Susan M. Poutanen, Karen G. Green, Nathalie Tijet, Brenda L. Coleman, Barbara M. Willey, Jennie Johnstone, David B. Richardson, Andrew E. Simor, Roberto G. Melano, Matthew P. Muller, Philipp Köhler, Kevin Katz, Jeff Powis, Allison McGeer, Christine Seah, Irene Armstrong, and Samir N. Patel
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0301 basic medicine ,medicine.medical_specialty ,Epidemiology ,030106 microbiology ,lcsh:Medicine ,Biology ,Integron ,beta-Lactamases ,Article ,Metallo β lactamase ,03 medical and health sciences ,0302 clinical medicine ,Plasmid ,Enterobacteriaceae ,Drug Resistance, Multiple, Bacterial ,medicine ,Humans ,030212 general & internal medicine ,lcsh:Science ,Clinical microbiology ,Ontario ,Genetics ,Multidisciplinary ,Whole Genome Sequencing ,lcsh:R ,Enterobacteriaceae Infections ,Outbreak ,biochemical phenomena, metabolism, and nutrition ,bacterial infections and mycoses ,biology.organism_classification ,3. Good health ,Aquatic environment ,Case-Control Studies ,biology.protein ,lcsh:Q ,Ontario canada - Abstract
Surveillance data from Southern Ontario show that a majority of Verona Integron-encoded Metallo-β-lactamase (VIM)-producing Enterobacteriaceae are locally acquired. To better understand the local epidemiology, we analysed clinical and environmental blaVIM-positive Enterobacteriaceae from the area. Clinical samples were collected within the Toronto Invasive Bacterial Diseases Network (2010–2016); environmental water samples were collected in 2015. We gathered patient information on place of residence and hospital admissions prior to the diagnosis. Patients with and without plausible source of acquisition were compared regarding risk exposures. Microbiological isolates underwent whole-genome sequencing (WGS); blaVIM carrying plasmids were characterized. We identified 15 patients, thereof 11 with blaVIM-1-positive Enterobacter hormaechei within two genetic clusters based on WGS. Whereas no obvious epidemiologic link was identified among cluster I patients, those in cluster II were connected to a hospital outbreak. Except for patients with probable acquisition abroad, we did not identify any further risk exposures. Two blaVIM-1-positive E. hormaechei from environmental waters matched with the clinical clusters; plasmid sequencing suggested a common ancestor plasmid for the two clusters. These data show that both clonal spread and horizontal gene transfer are drivers of the dissemination of blaVIM-1-carrying Enterobacter hormaechei in hospitals and the aquatic environment in Southern Ontario, Canada.
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- 2020
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32. Household Transmission of Carbapenemase-producing Enterobacterales in Ontario, Canada
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Susan M. Poutanen, Aimee Paterson, Philipp Kohler, Barbara M. Willey, Alainna J Jamal, Brenda L. Coleman, Jennie Johnstone, Emily Borgundvaag, Matthew P. Muller, Xi Zoe Zhong, Amna Faheem, Kevin Katz, Alicia Sarabia, Samir N. Patel, Anu Rebbapragada, Laura Wisely, Shumona Shafinaz, Roberto G. Melano, Sarah Nayani, Andrew E. Simor, Irene Armstrong, Karen Green, Kithsiri Jayasinghe, David A. Boyd, Allison McGeer, Lubna Farooqi, David B. Richardson, Laura F. Mataseje, Angel X Li, and Michael R. Mulvey
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0301 basic medicine ,Microbiology (medical) ,medicine.medical_specialty ,030106 microbiology ,Population ,Logistic regression ,beta-Lactamases ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,Bacterial Proteins ,law ,Enterobacterales ,Epidemiology ,Medicine ,Humans ,030212 general & internal medicine ,education ,Online Only Articles ,Generalized estimating equation ,Index case ,Ontario ,education.field_of_study ,business.industry ,Enterobacteriaceae Infections ,3. Good health ,Infectious Diseases ,Transmission (mechanics) ,Spouse ,business ,Demography - Abstract
Background Data on household transmission of carbapenemase-producing Enterobacterales (CPE) remain limited. We studied risk of CPE household co-colonization and transmission in Ontario, Canada. Methods We enrolled CPE index cases (identified via population-based surveillance from January 2015 to October 2018) and their household contacts. At months 0, 3, 6, 9, and 12, participants provided rectal and groin swabs. Swabs were cultured for CPE until September 2017, when direct polymerase chain reaction (PCR; with culture of specimens if a carbapenemase gene was detected) replaced culture. CPE risk factor data were collected by interview and combined with isolate whole-genome sequencing to determine likelihood of household transmission. Risk factors for household contact colonization were explored using a multivariable logistic regression model with generalized estimating equations. Results Ninety-five households with 177 household contacts participated. Sixteen (9%) household contacts in 16 (17%) households were CPE-colonized. Household transmission was confirmed in 3/177 (2%) cases, probable in 2/177 (1%), possible in 9/177 (5%), and unlikely in 2/177 (1%). Household contacts were more likely to be colonized if they were the index case’s spouse (odds ratio [OR], 6.17; 95% confidence interval [CI], 1.05–36.35), if their index case remained CPE-colonized at household enrollment (OR, 7.00; 95% CI, 1.92–25.49), or if they had at least 1 set of specimens processed after direct PCR was introduced (OR, 6.46; 95% CI, 1.52–27.40). Conclusions Nine percent of household contacts were CPE-colonized; 3% were a result of household transmission. Hospitals may consider admission screening for patients known to have CPE-colonized household contacts.
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- 2020
33. Estimated surge in hospitalization and intensive care due to the novel coronavirus pandemic in the Greater Toronto Area, Canada: a mathematical modeling study with application at two local area hospitals
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Sharmistha Mishra, Huiting Ma, Matthew P. Muller, Lisa Ishiguro, Kristy C. Y. Yiu, Mark Downing, J. Michael Paterson, Anthea Lee, Eric A. Coomes, Sharon E. Straus, Linwei Wang, Eliane Kim, David Landsman, Victoria Pequegnat, Michael J. Schull, and Adrienne K. Chan
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0303 health sciences ,medicine.medical_specialty ,Inpatient care ,business.industry ,Psychological intervention ,medicine.disease ,3. Good health ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,Transmission (mechanics) ,law ,Intensive care ,Pandemic ,Health care ,Epidemiology ,medicine ,030212 general & internal medicine ,Medical emergency ,business ,Baseline (configuration management) ,030304 developmental biology - Abstract
BackgroundA hospital-level pandemic response involves anticipating local surge in healthcare needs.MethodsWe developed a mechanistic transmission model to simulate a range of scenarios of COVID-19 spread in the Greater Toronto Area. We estimated healthcare needs against 2019 daily admissions using healthcare administrative data, and applied outputs to hospital-specific data on catchment, capacity, and baseline non-COVID admissions to estimate potential surge by day 90 at two hospitals (St. Michael’s Hospital [SMH] and St. Joseph’s Health Centre [SJHC]). We examined fast/large, default, and slow/small epidemics, wherein the default scenario (R0 2.4) resembled the early trajectory in the GTA.ResultsWithout further interventions, even a slow/small epidemic exceeded the city’s daily ICU capacity for patients without COVID-19. In a pessimistic default scenario, for SMH and SJHC to remain below their non-ICU bed capacity, they would need to reduce non-COVID inpatient care by 70% and 58% respectively. SMH would need to create 86 new ICU beds, while SJHC would need to reduce its ICU beds for non-COVID care by 72%. Uncertainty in local epidemiological features was more influential than uncertainty in clinical severity. If physical distancing reduces contacts by 20%, maximizing the diagnostic capacity or syndromic diagnoses at the community-level could avoid a surge at each hospital.InterpretationAs distribution of the city’s surge varies across hospitals over time, efforts are needed to plan and redistribute ICU care to where demand is expected. Hospital-level surge is based on community-level transmission, with community-level strategies key to mitigating each hospital’s surge.
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- 2020
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34. Emergence of Carbapenemase-Producing Enterobacteriaceae, South-Central Ontario, Canada1
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Brenda L. Coleman, Shumona Shafinaz, Jeff Powis, Andrew E. Simor, Irene Armstrong, Sergio Borgia, Freda Lam, Matthew P. Muller, Allison McGeer, Samir N. Patel, Karen Green, Jennie Johnstone, Susan M. Poutanen, Kevin Katz, Philipp Kohler, Alicia Sarabia, Roberto G. Melano, Anu Rebbapragada, Emily Borgundvaag, Huda Almohri, David B. Richardson, and Amna Faheem
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0301 basic medicine ,Microbiology (medical) ,medicine.medical_specialty ,Epidemiology ,Klebsiella pneumoniae ,030106 microbiology ,Population ,Carbapenem-resistant enterobacteriaceae ,Drug resistance ,03 medical and health sciences ,0302 clinical medicine ,Antibiotic resistance ,medicine ,030212 general & internal medicine ,education ,education.field_of_study ,biology ,Transmission (medicine) ,business.industry ,Incidence (epidemiology) ,Medical record ,biochemical phenomena, metabolism, and nutrition ,biology.organism_classification ,3. Good health ,Infectious Diseases ,Emergency medicine ,business - Abstract
We analyzed population-based surveillance data from the Toronto Invasive Bacterial Diseases Network to describe carbapenemase-producing Enterobacteriaceae (CPE) infections during 2007-2015 in south-central Ontario, Canada. We reviewed patients' medical records and travel histories, analyzed microbiologic and clinical characteristics of CPE infections, and calculated incidence. Among 291 cases identified, New Delhi metallo-β-lactamase was the predominant carbapenemase (51%). The proportion of CPE-positive patients with prior admission to a hospital in Canada who had not received healthcare abroad or traveled to high-risk areas was 13% for patients with oxacillinase-48, 24% for patients with New Delhi metallo-β-lactamase, 55% for patients with Klebsiella pneumoniae carbapenemase, and 67% for patients with Verona integron-encoded metallo-β-lactamase. Incidence of CPE infection increased, reaching 0.33 cases/100,000 population in 2015. For a substantial proportion of patients, no healthcare abroad or high-risk travel could be established, suggesting CPE acquisition in Canada. Policy and practice changes are needed to mitigate nosocomial CPE transmission in hospitals in Canada.
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- 2018
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35. Emergence of Carbapenemase-Producing Enterobacteriaceae, South-Central Ontario, Canada
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Philipp P. Kohler, Roberto G. Melano, Samir N. Patel, Shumona Shafinaz, Amna Faheem, Brenda L. Coleman, Karen Green, Irene Armstrong, Huda Almohri, Sergio Borgia, Emily Borgundvaag, Jennie Johnstone, Kevin Katz, Freda Lam, Matthew P. Muller, Jeff Powis, Susan M. Poutanen, David Richardson, Anu Rebbapragada, Alicia Sarabia, Andrew Simor, and Allison McGeer
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carbapenem-resistant Enterobacteriaceae ,drug resistance ,bacterial infections ,beta-lactam resistance ,lcsh:R ,lcsh:Medicine ,lcsh:RC109-216 ,biochemical phenomena, metabolism, and nutrition ,CPE ,bacteria ,lcsh:Infectious and parasitic diseases - Abstract
We analyzed population-based surveillance data from the Toronto Invasive Bacterial Diseases Network to describe carbapenemase-producing Enterobacteriaceae (CPE) infections during 2007–2015 in south-central Ontario, Canada. We reviewed patients’ medical records and travel histories, analyzed microbiologic and clinical characteristics of CPE infections, and calculated incidence. Among 291 cases identified, New Delhi metallo-β-lactamase was the predominant carbapenemase (51%). The proportion of CPE-positive patients with prior admission to a hospital in Canada who had not received healthcare abroad or traveled to high-risk areas was 13% for patients with oxacillinase-48, 24% for patients with New Delhi metallo-β-lactamase, 55% for patients with Klebsiella pneumoniae carbapenemase, and 67% for patients with Verona integron-encoded metallo-β-lactamase. Incidence of CPE infection increased, reaching 0.33 cases/100,000 population in 2015. For a substantial proportion of patients, no healthcare abroad or high-risk travel could be established, suggesting CPE acquisition in Canada. Policy and practice changes are needed to mitigate nosocomial CPE transmission in hospitals in Canada.
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- 2018
36. Antimicrobial Stewardship and Intensive Care Unit Mortality: A Systematic Review
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Christopher F. Lowe, Thomas C Havey, Nick Daneman, Matthew P. Muller, Linda R. Taggart, Sagar Rohailla, Patrick J Lindsay, and David Lightfoot
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0301 basic medicine ,Microbiology (medical) ,medicine.medical_specialty ,Critical Illness ,030106 microbiology ,Population ,law.invention ,Antimicrobial Stewardship ,03 medical and health sciences ,0302 clinical medicine ,law ,Humans ,Medicine ,Antimicrobial stewardship ,In patient ,030212 general & internal medicine ,education ,education.field_of_study ,business.industry ,Clinical study design ,Intensive care unit ,Confidence interval ,Anti-Bacterial Agents ,Discontinuation ,Intensive Care Units ,Infectious Diseases ,Relative risk ,Emergency medicine ,business - Abstract
Background Antimicrobial stewardship programs (ASPs) using audit and feedback in the intensive care unit (ICU) setting can reduce harms related to inappropriate antibiotic use. However, inappropriate discontinuation or narrowing of antibiotic treatment could increase infection-related mortality in this population. Individual ASP studies are underpowered to detect differences in mortality. Methods We conducted a systematic review and meta-analysis of audit and feedback in the ICU setting, using mortality as our outcome. Results Of 2447 citations, 11 studies met our inclusion criteria. Although a variety of study designs were used to assess reductions in antibiotic use, mortality was analyzed using an uncontrolled before-after study design in all studies. Five studies directed audit and feedback to all or most ICU patients receiving antibiotics and measured overall ICU mortality. In the meta-analysis of these studies, the pooled relative risk of ICU mortality was 1.03 (95% confidence interval, .93-1.14). A second meta-analysis of 3 smaller studies that evaluated mortality only in patients directly assessed by the ASP found a pooled relative risk of ICU mortality of 1.06 (95% confidence interval, .80 to 1.4). Three studies were not appropriate for meta-analysis, but their results were consistent with our overall findings. Conclusions Our systematic review did not identify a change in mortality associated with antimicrobial stewardship using audit and feedback in the ICU setting. These results increase our confidence that audit and feedback can be safely implemented in this setting. Future studies should report standardized estimates of mortality and use more robust study designs to assess mortality, when feasible.
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- 2018
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37. Factors associated with influenza vaccination among healthcare workers in acute care hospitals in Canada
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Brenda L. Coleman, Matthew P. Muller, Mark Loeb, Joanne M. Langley, Shelly A. McNeil, Andrew E. Simor, Hadia Hussain, Allison McGeer, Jeff Powis, and Kevin Katz
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Adult ,Male ,0301 basic medicine ,Pulmonary and Respiratory Medicine ,medicine.medical_specialty ,Vaccination Coverage ,Adolescent ,Epidemiology ,Influenza vaccine ,Health Personnel ,030106 microbiology ,Logistic regression ,Odds ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Risk Factors ,Surveys and Questionnaires ,Acute care ,Influenza, Human ,Health care ,Ethnicity ,Humans ,Medicine ,Prospective Studies ,030212 general & internal medicine ,Prospective cohort study ,Aged ,healthcare workers ,business.industry ,Public Health, Environmental and Occupational Health ,Original Articles ,Odds ratio ,Middle Aged ,Hospitals ,3. Good health ,Vaccination ,Infectious Diseases ,Influenza Vaccines ,vaccine uptake ,Female ,Original Article ,influenza ,business ,Demography - Abstract
Background Influenza vaccine coverage rates among healthcare workers (HCWs) in acute care facilities in Canada remain below national targets. Objective To determine factors associated with influenza vaccine uptake among HCWs. Methods This secondary analysis of a prospective cohort study included HCWs aged 18-69 years, working ≥20 h/wk in a Canadian acute care hospital. Questionnaires were administered to participants in the fall of the season of participation (2011/12-2013/14) which captured demographic/household characteristics, medical histories, occupational, behavioural and risk factors for influenza. Generalized estimating equation logistic regression was used to determine factors associated with vaccine uptake in the season of participation. Results The adjusted odds ratio for influenza vaccination in the current season was highest for those vaccinated in 3 of 3 previous seasons (OR 156; 95% CI 98, 248) followed by those vaccinated in 2 of 3 and 1 of 3 previous seasons when compared with those not vaccinated. Compared with nurses, physicians (OR 4.2; 95% CI 1.4, 13.2) and support services staff (OR 1.8; 95% CI 1.3, 2.4) had higher odds ratios for vaccine uptake. Conversely, HCWs identifying as Black had lower odds of uptake compared with those with European ancestry (OR 0.44, 95% CI 0.26-0.75) when adjusted for other factors in the model. Conclusion Healthcare workers differ in their annual uptake of influenza vaccine based on their past vaccination history, occupation and ethnicity. These findings indicate a need to determine whether there are other vaccine-hesitant groups within healthcare settings and learn which approaches are successful in increasing their uptake of influenza vaccines.
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- 2018
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38. Can a smartphone app improve medical trainees’ knowledge of antibiotics?
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Matthew P. Muller, Linda R. Taggart, Michael Fralick, Dhruvin H. Hirpara, Elizabeth Leung, Reem Haj, Larissa M. Matukas, Karen Wong, and John Bartlett
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Male ,Canada ,Health Knowledge, Attitudes, Practice ,medicine.medical_specialty ,Students, Medical ,020205 medical informatics ,Context (language use) ,Smartphone APP ,Microbial Sensitivity Tests ,02 engineering and technology ,Antimicrobial stewardship ,smartphone ,03 medical and health sciences ,0302 clinical medicine ,Primary outcome ,Antibiogram ,Surveys and Questionnaires ,Drug Resistance, Bacterial ,0202 electrical engineering, electronic engineering, information engineering ,medicine ,Humans ,Prospective Studies ,030212 general & internal medicine ,Practice Patterns, Physicians' ,app ,Original Research ,Knowledge assessment ,Education, Medical ,Multivariable linear regression ,medicine.diagnostic_test ,business.industry ,Internship and Residency ,General Medicine ,Mobile Applications ,Anti-Bacterial Agents ,3. Good health ,Test (assessment) ,antibiogram ,Multivariate Analysis ,Practice Guidelines as Topic ,Smartphone app ,Physical therapy ,Female ,Clinical Competence ,Educational Measurement ,business ,Algorithms - Abstract
Objectives To determine whether a smartphone app, containing local bacterial resistance patterns (antibiogram) and treatment guidelines, improved knowledge of prescribing antimicrobials among medical trainees. Methods We conducted a prospective, controlled, pre-post study of medical trainees with access to a smartphone app (app group) containing our hospital's antibiogram and treatment guidelines compared to those without access (control group). Participants completed a survey which included a knowledge assessment test (score range, 0 [lowest possible score] to 12 [highest possible score]) at the start of the study and four weeks later. The primary outcome was change in mean knowledge assessment test scores between week 0 and week 4. Change in knowledge assessment test scores in the app group were compared to the difference in scores in the control group using multivariable linear regression. Results Sixty-two residents and senior medical students participated in the study. In a multivariable analysis controlling for sex and prior knowledge, app use was associated with a 1.1 point (95% CI: 0.10, 2.1) [β = 1.08, t(1) = 2.08, p = 0.04] higher change in knowledge score compared to the change in knowledge scores in the control group. Among those in the app group, 88% found it easy to navigate, 85% found it useful, and about one- quarter used it daily. Conclusions An antibiogram and treatment algorithm app increased knowledge of prescribing antimicrobials in the context of local antibiotic resistance patterns. These findings reinforce the notion that smartphone apps can be a useful and innovative means of delivering medical education.
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- 2017
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39. 837. Contamination of Hospital Drains by Carbapenemase-Producing Enterobacterales (CPE) in Ontario, Canada
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Matthew P. Muller, Sergio Borgia, Kevin R. Brown, Jennie Johnstone, Kevin Katz, David A. Boyd, Gordana Pikula, Allison McGeer, Jerome A. Leis, Cameron Thomas, Vanessa Allen, Mamta Mehta, David N. Fisman, Wil Ng, Michael R. Mulvey, Aimee Paterson, Lin Tang, Angel Li, William Ciccotelli, Rajni Pantelidis, Rachel Sawicki, Alainna J Jamal, Shelley Schmidt, Renata Souto, Kornelija Delibasic, and Laura F. Mataseje
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AcademicSubjects/MED00290 ,Infectious Diseases ,Oncology ,business.industry ,Environmental health ,Enterobacterales ,Poster Abstracts ,Medicine ,Carbapenemase producing ,biochemical phenomena, metabolism, and nutrition ,Contamination ,business ,Ontario canada - Abstract
Background The hospital water environment is a CPE reservoir, and transmission of CPE from drains to patients is a risk. Methods We cultured sink and shower drains in patient rooms and communal shower rooms that were exposed to inpatients with CPE colonization/infection from October 2007 to December 2017 at 10 hospitals. We compared patient room drain CPE to prior room occupant CPE using Illumina and MinION whole-genome sequencing. Results Three-hundred and ten inpatients exposed 1,209 drains, of which 53 (4%) yielded 62 CPE isolates at 7 (70%) hospitals. Compared to room occupant CPE isolates, drain CPE isolates were more likely Enterobacter spp. (6, 10% vs. 25, 51%, p< 0.0001) or KPC-producers (9, 15% vs. 23, 47%, p=0.0002). Of the 49 CPE isolates in patient room drains, 4 (8%) were linked to a prior room occupant (Table), 24 (49%) had the same carbapenemase as a prior room occupant but isolates/carbapenemase gene-containing plasmids that were unrelated, and 21 (43%) did not share a carbapenemase with a prior room occupant. The 4 drains linked to prior room occupants were likely contaminated by these room occupants, who were CPE-colonized prior to drain exposure. Despite few links between drain and room occupant CPE, there were 10 isolates harbouring related blaNDM-1-containing IncHI2A/HI2-type plasmids in 8 rooms on two units at one hospital. Nine of these were Enterobacter hormaechei ST66 isolates that were 0 to 6 SNVs apart and one was a Klebsiella oxytoca STnovel isolate. Table. Four patient room drain CPE isolates (D1b, D4, D5, D12) and isolates from prior room occupants that they were related to by whole-genome sequencing. Conclusion It was uncommon for drain CPE to be linked to prior patient exposure. This suggests contamination of most drains by undetected colonized patients and a need for more aggressive patient screening in our hospitals. This may also suggest retrograde (drain-to-drain) transmission, especially considering the 10 isolate drain cluster at one hospital. Reasons for the preponderance of Enterobacter spp. in drains requires further study. Disclosures Allison McGeer, MD, FRCPC, GlaxoSmithKline (Advisor or Review Panel member, Research Grant or Support)Merck (Advisor or Review Panel member, Research Grant or Support)Pfizer (Research Grant or Support)
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- 2020
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40. Group Electronic Monitoring of Hand Hygiene on Inpatient Units: A Multicenter Cluster Randomized Quality Improvement Study
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Christine Moore, Shara Junaid, Natalie Coyle, Allison McGeer, Xingshan Cao, Jerome A. Leis, Liz McCreight, Jeff Powis, Daniel R. Ricciuto, Louis Wong, Natasha Salt, Sajeetha Sivaramakrishna, Tanya Agnihotri, Victoria Williams, and Matthew P. Muller
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Microbiology (medical) ,medicine.medical_specialty ,Quality management ,Epidemiology ,business.industry ,media_common.quotation_subject ,Disease cluster ,medicine.disease_cause ,Methicillin-resistant Staphylococcus aureus ,Infectious Diseases ,Primary outcome ,Hygiene ,Emergency medicine ,medicine ,Inpatient units ,business ,media_common - Abstract
Background: The current approach to measuring hand hygiene (HH) relies on human auditors who capture Methods: A stepped-wedge cluster randomized quality improvement study was undertaken across 5 acute-care hospitals in Ontario, Canada. Overall, 746 inpatient beds were electronically monitored across 26 inpatient medical and surgical units. Daily HH performance as measured by group electronic monitoring was reported to inpatient units who discussed results to guide unit-led improvement strategies. The primary outcome was monthly HH adherence (%) between baseline and intervention. Secondary outcomes included transmission of antibiotic resistant organisms such as methicillin resistant Staphylococcus aureus (MRSA) and other healthcare-associated infections. Results: After adjusting for the correlation within inpatient units, there was a significant overall improvement in HH adherence associated with the intervention (IRR, 1.73; 95% CI, 1.47–1.99; P < .0001). Monthly HH adherence relative to the intervention increased from 29% (1,395,450 of 4,544,144) to 37% (598,035 of 1,536,643) within 1 month, followed by consecutive incremental increases up to 53% (804,108 of 1,515,537) by 10 months (P < .0001). We identified a trend toward reduced healthcare-associated transmission of MRSA (0.74; 95% CI, 0.53–1.04; P = .08). Conclusions: The introduction of a system for group electronic monitoring led to rapid, significant, and sustained improvements in HH performance within a 2-year period.Funding: NoneDisclosures: None
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- 2020
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41. Predictors of Treatment Failure for Hip and Knee Prosthetic Joint Infections in the Setting of 1- and 2-Stage Exchange Arthroplasty: A Multicenter Retrospective Cohort
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Richard Jenkinson, Christopher Kandel, Earl R. Bogoch, Bettina E. Hansen, Jessica Widdifield, Kevin Katz, Abhilash Sajja, Allison McGeer, Felipe Garcia Jeldes, Matthew P. Muller, Sarah E. Ward, David Backstein, and Nick Daneman
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030222 orthopedics ,medicine.medical_specialty ,Prosthesis Retention ,business.industry ,Proportional hazards model ,medicine.medical_treatment ,Hazard ratio ,Retrospective cohort study ,surgical site infection ,Prosthesis ,Arthroplasty ,Surgery ,Editor's Choice ,03 medical and health sciences ,0302 clinical medicine ,Infectious Diseases ,revision arthroplasty ,Oncology ,Amputation ,Interquartile range ,Major Article ,medicine ,030212 general & internal medicine ,prosthetic joint infection ,business - Abstract
Background Prosthetic hip and knee joint infections (PJIs) are challenging to eradicate despite prosthesis removal and antibiotic therapy. There is a need to understand risk factors for PJI treatment failure in the setting of prosthesis removal. Methods A retrospective cohort of individuals who underwent prosthesis removal for a PJI at 5 hospitals in Toronto, Canada, from 2010 to 2014 was created. Treatment failure was defined as recurrent PJI, amputation, death, or chronic antibiotic suppression. Potential risk factors for treatment failure were abstracted by chart review and assessed using a Cox proportional hazards model. Results A total of 533 individuals with prosthesis removal were followed for a median (interquartile range) of 814 (235–1530) days. A 1-stage exchange was performed in 19% (103/533), whereas a 2-stage procedure was completed in 88% (377/430). Treatment failure occurred in 24.8% (132/533) at 2 years; 53% (56/105) of recurrent PJIs were caused by a different bacterial species. At 4 years, treatment failure occurred in 36% of 1-stage and 32% of 2-stage procedures (P = .06). Characteristics associated with treatment failure included liver disease (adjusted hazard ratio [aHR], 3.12; 95% confidence interval [CI], 2.09–4.66), the presence of a sinus tract (aHR, 1.53; 95% CI, 1.12–2.10), preceding debridement with prosthesis retention (aHR, 1.68; 95% CI, 1.13–2.51), a 1-stage procedure (aHR, 1.72; 95% CI, 1.28–2.32), and infection due to Gram-negative bacilli (aHR, 1.35; 95% CI, 1.04–1.76). Conclusions Failure of PJI therapy is common, and risk factors are not easily modified. Improvements in treatment paradigms are needed, along with efforts to reduce orthopedic surgical site infections., Prosthetic joint infections are challenging to eradicate and in this retrospective cohort the characteristics associated with treatment failure included liver disease, presence of a sinus tract, prior debridement with prosthesis retention, a one-stage procedure, and infection with a Gram-negative bacilli.
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- 2019
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42. Evaluation of Matrix-Assisted Laser Desorption Ionization Time-of-Flight Mass Spectrometry and ClinPro Tools as a Rapid Tool for Typing Streptococcus pyogenes
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Matthew P. Muller, Larissa M. Matukas, Ana Cabrera, and Manal Tadros
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MALDI-TOF ,0301 basic medicine ,Desorption ionization ,business.industry ,030106 microbiology ,typing ,Strain typing ,External validation ,Matrix assisted laser desorption ionization time of flight ,Computational biology ,medicine.disease_cause ,Mass spectrometry ,03 medical and health sciences ,0302 clinical medicine ,Infectious Diseases ,Oncology ,GAS ,Streptococcus pyogenes ,Major Article ,medicine ,Analysis software ,030212 general & internal medicine ,Typing ,business - Abstract
Background Timely strain typing of group A Streptococci (GAS) is necessary to guide outbreak recognition and investigation. We evaluated the use of (matrix-assisted laser desorption ionization time-of-flight mass spectrometry) combined with cluster analysis software to rapidly distinguish between related and unrelated GAS isolates in real-time. Methods We developed and validated a typing model using 177 GAS isolates with known emm types. The typing model was created using 43 isolates, which included 8 different emm types, and then validated using 134 GAS isolates of known emm types that were not included in model generation. Results Twelve spectra were generated from each isolate during validation. The overall accuracy of the model was 74% at a cutoff value of 80%. The model performed well with emm types 4, 59, and 74 but showed poor accuracy for emm types 1, 3, 12, 28, and 101. To evaluate the ability of this tool to perform typing in an outbreak situation, we evaluated a virtual outbreak model using a “virtual outbreak strain; emm74” compared with a non-outbreak group or an “outgroup “ of other emm types. External validation of this model showed an accuracy of 91.4%. Conclusions This approach has the potential to provide meaningful information that can be used in real time to identify and manage GAS outbreaks. Choosing isolates characterized by whole genome sequencing rather than emm typing for model generation should improve the accuracy of this approach in rapidly identifying related and unrelated GAS strains.
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- 2019
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43. COVID-19 Outbreak in an Urban Hemodialysis Unit
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Kevin Yau, Ramzi Fattouh, Gagan Shokar, Naureen Siddiqui, Ron Wald, Matthew P. Muller, Alison Thomas, Molly Lin, Jordan J. Weinstein, Jeffrey S. Zaltzman, Larissa M. Matukas, William Beaubien-Souligny, and Sanja Neskovic
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Male ,medicine.medical_treatment ,law.invention ,Kidney Failure ,Risk Factors ,law ,Infection control ,Transmission (medicine) ,Middle Aged ,Intensive care unit ,Hemodialysis Units, Hospital ,Nephrology ,Hemodialysis ,Screening ,Female ,medicine.symptom ,Coronavirus Infections ,Infection ,coronavirus 2019 (COVID-19) ,Canada ,medicine.medical_specialty ,Health Personnel ,Pneumonia, Viral ,Asymptomatic ,Article ,Betacoronavirus ,Renal Dialysis ,Occupational Exposure ,Disease Transmission, Infectious ,medicine ,Humans ,severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Pandemics ,Retrospective Studies ,Mechanical ventilation ,Infection Control ,SARS-CoV-2 ,business.industry ,COVID-19 ,Outbreak ,Retrospective cohort study ,Nasopharyngeal Swabs ,End-Stage Kidney Disease (ESKD) ,Emergency medicine ,Kidney Failure, Chronic ,Nosocomial ,business ,Dialysis - Abstract
Rationale & Objective Hemodialysis patients are at increased risk for COVID-19 transmission due, in part, to difficulty maintaining physical distancing. Our hemodialysis unit experienced a COVID-19 outbreak despite following symptom-based screening guidelines. We describe the course of the COVID-19 outbreak and the infection control measures taken for mitigation. Study Design Retrospective cohort study Setting & Participants 237 maintenance hemodialysis patients and 93 hemodialysis staff at a single hemodialysis centre in Toronto, Canada. Exposure Universal screening of patients and staff with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Outcomes The primary outcome was detection of SARS-CoV-2 in nasopharyngeal samples from patients and staff using reverse transcriptase-polymerase chain reaction (RT-PCR) . Analytical Approach Descriptive statistics were used for clinical characteristics and the primary outcome. Results Eleven (4.6%) of 237 hemodialysis patients and 11 of 93 (12%) staff members had a positive RT-PCR test for SARS-CoV-2. Among individuals testing positive, 12 of 22 (55%) were asymptomatic at time of testing, and 7 of 22 (32%) were asymptomatic for the duration of follow-up. One patient was hospitalized at the time of SARS-CoV-2 infection and four additional patients with positive tests were subsequently hospitalized. Two patients (18%) required admission to the intensive care unit. After 30 days follow-up no patients had died or required mechanical ventilation. No hemodialysis staff required hospitalization. Universal droplet and contact precautions were implemented during the outbreak. Hemodialysis staff with SARS-CoV-2 infection were placed on home quarantine regardless of symptom status. Patients with SARS-CoV-2 infection including asymptomatic individuals were treated with droplet and contact precautions until confirmation of negative SARS-CoV-2 RT-PCR testing. Analysis of the outbreak identified two index cases with subsequent nosocomial transmission within the dialysis unit and in shared shuttle buses to the hemodialysis unit. Limitations Single centre study. Conclusions Universal SARS-CoV-2 testing and universal droplet and contact precautions in the setting of an outbreak appeared to be effective in preventing further transmission., Graphical abstract, Plain Language Summary: The COVID-19 pandemic has presented unique challenges to patients on hemodialysis. Despite having risk factors for severe infection, dialysis patients must visit healthcare facilities thrice weekly, where physical distancing is challenging. Despite protocols in place to identify and isolate symptomatic individuals, we report a COVID-19 outbreak in a hemodialysis unit in Toronto, Ontario, which prompted the screening of all hemodialysis patients and most staff for SARS-CoV-2 infection detected in nasopharyngeal swabs specimens, regardless of symptoms. Eleven of 237 (4.6%) hemodialysis patients and 11 of 93 (12%) of staff tested positive for COVID-19. Notably 55% of those testing positive were asymptomatic at the time of testing. This study demonstrates the importance of universal testing in stopping the spread of COVID-19 during an outbreak.
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- 2020
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44. Multilocus Variable-Number Tandem-Repeat Analysis of Clostridioides difficile Clusters in Ribotype 027 Isolates and Lack of Association with Clinical Outcomes
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Annie-Claude Labbé, Matthew P. Muller, Louis-Charles Fortier, Allison McGeer, Andrew E. Simor, Julian R. Garneau, Jacques Pépin, Jeff Powis, Claire Nour Abou Chakra, Wayne L. Gold, Louis Valiquette, and Kevin Katz
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Microbiology (medical) ,Male ,medicine.medical_specialty ,Toxic megacolon ,Canada ,genetic structures ,Epidemiology ,medicine.medical_treatment ,Perforation (oil well) ,Minisatellite Repeats ,Multiple Loci VNTR Analysis ,Ribotyping ,law.invention ,03 medical and health sciences ,Feces ,0302 clinical medicine ,law ,Internal medicine ,medicine ,Humans ,030212 general & internal medicine ,Colectomy ,Aged ,Aged, 80 and over ,Ontario ,0303 health sciences ,030306 microbiology ,business.industry ,Clostridioides difficile ,Quebec ,Middle Aged ,medicine.disease ,Intensive care unit ,3. Good health ,Bacterial Typing Techniques ,Hospitalization ,Variable number tandem repeat ,Clostridium Infections ,Commentary ,Female ,business ,Clostridioides ,Multilocus Sequence Typing - Abstract
The epidemiology of Clostridioides difficile infection (CDI) has drastically changed since the emergence of the epidemic strain BI/NAP1/027, also known as ribotype 027 (R027). However, the relationship between the infecting C. difficile strain and clinical outcomes is still debated. We hypothesized that certain subpopulations of R027 isolates could be associated with unfavorable outcomes. We applied high-resolution multilocus variable-number tandem-repeat analysis (MLVA) to characterize C. difficile R027 isolates collected from confirmed CDI patients recruited across 10 Canadian hospitals from 2005 to 2008. PCR ribotyping was performed first to select R027 isolates that were then analyzed by MLVA (n = 450). Complicated CDI (cCDI) was defined by the occurrence of any of admission to an intensive care unit, colonic perforation, toxic megacolon, colectomy, and if CDI was the cause or contributed to death within 30 days after enrollment. Three major MLVA clusters were identified, MC-1, MC-3, and MC-10. MC-1 and MC-3 were exclusive to Quebec centers, while MC-10 was found only in Ontario. Fewer cases infected with MC-1 developed cCDI (4%) than those infected with MC-3 and MC-10 (15% and 16%, respectively), but a statistically significant difference was not reached. Our data did not identify a clear association between subpopulations of R027 and different clinical outcomes; however, the data confirmed the utility of MLVA’s higher discrimination potential to better characterize CDI populations in an epidemiological analysis. For a patient with CDI, the progression toward an unfavorable outcome is a complex process that probably includes several interrelated strain and host characteristics.
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- 2018
45. Immunogenicity and reactogenicity of high- vs. standard-dose trivalent inactivated influenza vaccine in healthcare workers: a pilot randomized controlled trial
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Janet E. McElhaney, Kevin Katz, Andrew E. Simor, Matthew P. Muller, A. McGeer, Brenda L. Coleman, Cheryl Volling, and Jeff Powis
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0301 basic medicine ,Microbiology (medical) ,Adult ,Male ,medicine.medical_specialty ,Hemagglutination ,Adolescent ,Influenza vaccine ,030106 microbiology ,Dose-Response Relationship, Immunologic ,Pilot Projects ,law.invention ,Haemagglutination inhibition ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Vaccine strain ,Randomized controlled trial ,Double-Blind Method ,law ,Internal medicine ,Medicine ,Humans ,030212 general & internal medicine ,Seroconversion ,Reactogenicity ,business.industry ,Immunogenicity ,General Medicine ,Middle Aged ,Infectious Diseases ,Vaccines, Inactivated ,Influenza Vaccines ,Female ,business - Abstract
To compare immunogenicity, reactogenicity and acceptability of high- and standard-dose trivalent inactivated influenza vaccine (HDTIV, SDTIV) in 18- to 64-year-olds.We randomized 18- to 64-year-olds to HDTIV or SDTIV in two consecutive years. We collected serum on days 0 and 21, measured haemagglutination inhibition geometric mean titres (GMT) and compared seroconversion, day 21 titres, seroprotection, reactogenicity and acceptability.Immunogenicity was evaluable in 42 of 47 2014 participants, all 33 both-year participants and 87 of 90 2015-only participants. First-dose HDTIV recipients experienced seroconversion more frequently than SDTIV recipients to A(H3N2) in 2014 (13/21, 62% vs. 4/21, 19%, p 0.01) and to all vaccine strains in 2015: (A(H1N1): 24/42, 57% vs. 15/59, 25%; A(H3N2): 42/42, 100% vs. 47/59, 80%; B: 25/42, 60% vs. 13/59, 22%; all p0.01). Day 21 haemagglutination inhibition GMT were higher in first and two sequential-year HDTIV vs. SDTIV recipients: A(H1N1): GMT 749 and 768 vs. 384 (p0.0001, p 0.002); A(H3N2): 1238 and 956 vs. 633 (p 0.0003, p 0.1); and B: 1113 and 1086 vs. 556 (p 0.0005, p 0.02). HDTIV was more reactogenic (local pain score 3 vs. 1 of 10 on day 0/1, p 0.0003), but recipients were equally willing to be revaccinated (HDTIV: 76/83 (92%); SDTIV: 76/80 (95%), p 0.54). The ratios of day 21 GMT in SDTIV recipients vaccinated in 0 to 4 prior years to those in SDTIV and HDTIV recipients vaccinated in 15 or more prior years were A(H1N1): 3.73 and 1.38; A(H3N2) 3.07 and 1.16; and B: 2.01 and 1.21.HDTIV is more immunogenic and reactogenic and as acceptable as SDTIV in 18- to 64-year-olds.
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- 2018
46. Patient- and hospital-level predictors of vancomycin-resistant Enterococcus (VRE) bacteremia in Ontario, Canada
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Gary Garber, Camille Lemieux, Jennie Johnstone, Kathryn N. Suh, Matthew P. Muller, Laura C. Rosella, Gerald A Evans, Dominik Mertz, Cynthia Chen, Michael Gardam, Mary Vearncombe, Virginia Roth, Michael John, Michelle E. Policarpio, Kwaku Adomako, Chatura Prematunge, Freda Lam, Susy Hota, Allison McGeer, and Kevin Katz
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0301 basic medicine ,Male ,medicine.medical_specialty ,Epidemiology ,030106 microbiology ,Bacteremia ,medicine.disease_cause ,law.invention ,Vancomycin-Resistant Enterococci ,03 medical and health sciences ,0302 clinical medicine ,law ,Risk Factors ,Vancomycin ,Internal medicine ,medicine ,Odds Ratio ,Humans ,Vancomycin-resistant Enterococcus ,030212 general & internal medicine ,Generalized estimating equation ,Gram-Positive Bacterial Infections ,Aged ,Aged, 80 and over ,Ontario ,biology ,business.industry ,Health Policy ,Public Health, Environmental and Occupational Health ,Hospital level ,Odds ratio ,Middle Aged ,biology.organism_classification ,medicine.disease ,Intensive care unit ,Confidence interval ,Anti-Bacterial Agents ,Infectious Diseases ,Enterococcus ,Case-Control Studies ,Female ,business - Abstract
Background Data are limited on risk factors for vancomycin-resistant Enterococcus (VRE) bacteremia. Methods All patients with a confirmed VRE bacteremia in Ontario, Canada, between January 2009 and December 2013 were linked to provincial healthcare administrative data sources and frequency matched to 3 controls based on age, sex, and aggregated diagnosis group. Associations between predictors and VRE bacteremia were estimated by generalized estimating equations and summarized using odds ratios (ORs) and corresponding 95% confidence intervals (CIs). Results In total, 217 cases and 651 controls were examined. In adjusted analyses, patient-level predictors included bone marrow transplant (OR 106.99 [95% CI 12.19–939.26]); solid organ transplant (OR 17.17 [95% CI 4.95–59.54]); any cancer (OR 8.64 [95% CI 3.88–19.21]); intensive care unit (ICU) admission (OR 6.81 [95% CI 3.53–13.13]); heart disease (OR 5.27 [95% CI 2.00–13.90]); and longer length of stay (OR 1.07 per day [95% CI 1.06–1.09]). Hospital-level predictors included hospital size (per increase in 100 beds (OR 1.26 [95% CI 1.07–1.48]) and teaching hospitals (OR 3.87 [95% CI 1.85–8.08]). Conclusions Patients with a bone marrow transplant, solid organ transplant, cancer, or who are admitted to the ICU are at highest risk of VRE bacteremia, particularly at large hospitals and teaching hospitals.
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- 2018
47. 512. Healthcare-Acquired (HA) Carbapenemase-Producing Enterobacteriales (CPE) in Southern Ontario, Canada: To Whom Are We Transmitting CPE?
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Roberto G. Melano, Zoe Zhong, Anu Rebbapragada, Matthew P. Muller, Jennie Johnstone, Kevin Katz, Susan M. Poutanen, Alicia Sarabia, Allison McGeer, Philipp Kohler, Alainna J Jamal, David B. Richardson, Samira Mubareka, Brenda L. Coleman, and Samir N. Patel
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Enterobacteriales ,medicine.medical_specialty ,biology ,business.industry ,Carbapenemase producing ,biology.organism_classification ,Abstracts ,Infectious Diseases ,Oncology ,Family medicine ,Health care ,Poster Abstracts ,medicine ,business ,Ontario canada - Abstract
Background Though CPE in Canada are mainly acquired abroad, outbreaks/transmission in Canadian hospitals have been reported. We determined the incidence of HA CPE in southern Ontario, Canada, to inform prevention and control programs. Methods Toronto Invasive Bacterial Diseases Network (TIBDN) has performed population-based surveillance for CPE in the Toronto area/Peel region of southern Ontario, Canada, since CPE were first identified in October 2007. Clinical microbiology laboratories report all CPE isolates to TIBDN; annual lab audits are performed. Incidence calculations used first isolates as numerator; denominator (patient-days/fiscal year for Toronto/Peel hospitals) was from the Ontario Ministry of Health and Long-Term Care. Results The incidence of HA CPE has risen from 0 in 2007/2008 to 0.45 and 0.28 per 100,000 patient-days for all and clinical cases, respectively, in 2017/2018 (Figure, P < 0.0001). 190/790 (24%) incident cases of CPE colonization/infection in southern Ontario from October 2007 to December 2018 were likely HA (hospitalized in Ontario with no history of hospitalization abroad/high-risk travel). Eighty (25%) were female and the median age was 73 years (IQR 57–83 years). 157 (83%) had no prior travel abroad and 33 (17%) had prior low-risk travel. 122 (64%) had their CPE identified >72 hours post-admission (of which 83 also had ≥1 other prior Ontario hospitalization); 68 (36%) had their CPE identified at admission but had recent prior Ontario hospitalization. HA cases vs. foreign acquisitions were significantly more likely K. pneumoniae (48% vs. 38%, P = 0.02) and Enterobacter spp. (20% vs. 7%, P < 0.0001) and less likely E. coli (20% vs. 48%, P < 0.0001). Genes of HA vs. foreign acquisitions were significantly more likely blaKPC (34% vs. 12%, P < 0.0001) and blaVIM (12% vs. 2%, P < 0.0001) and less likely blaNDM±OXA (38% vs. 56%, P < 0.0001) and blaOXA (13% vs. 27%, P = 0.0001). 36 (19%) HA cases had a negative CPE screen before their first positive CPE test (10/36 (28%) were on admission). The median incidence of HA CPE per 100,000 patient-days at each hospital was 0.44 (IQR 0.15–0.68) (P < 0.0001). Conclusion A quarter of CPE cases in southern Ontario were HA and the incidence of HA cases is increasing. Most cases were admitted to >1 Ontario hospital. Strategies to control transmission are critical. Disclosures All authors: No reported disclosures.
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- 2019
48. 2716. Persistence of 13-Valent Pneumococcal Conjugate Vaccine (PCV13) Serotypes in Invasive Pneumococcal Disease in Adults in Southern Ontario Canada Despite Routine Pediatric Vaccination
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Jennie Johnstone, Kevin Katz, David B. Richardson, Karen Green, Brenda L. Coleman, Agron Plevneshi, Allison McGeer, Wayne L. Gold, Matthew P. Muller, Sarah Nayani, Alicia Sarabia, Wallis Rudnick, Ian Kitai, Irene Martin, and Andrew E. Simor
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Serotype ,Pneumococcal disease ,business.industry ,Virology ,Pneumococcal conjugate vaccine ,Persistence (computer science) ,Vaccination ,Abstracts ,Infectious Diseases ,Oncology ,Poster Abstracts ,Medicine ,business ,medicine.drug ,Ontario canada - Abstract
Background In Ontario, Canada, PCV13 is covered for immunocompromised (IC) adults over 50y. PCV13 programs are thought not to be cost-effective in other adults because it is assumed that herd immunity from pediatric vaccination programs (PCV7 since 2005; PCV13 since 2010) will reduce PCV13 disease burden dramatically in adults. We analyzed data from the Toronto Invasive Bacterial Diseases Network (TIBDN) to ask whether PCV13-type invasive pneumococcal disease (IPD) in adults persists in our population. Methods TIBDN performs population-based surveillance for IPD in Toronto+Peel Region, Ontario (pop4.1M). All microbiology laboratories receiving specimens from residents report cases of IPD and submit isolates to a central study lab for serotyping; annual audits are conducted. Demographic, medical and vaccination information are obtained from patients, families and physicians. Population data are from Statistics Canada. Results Since 1995, 10,365 episodes of IPD have been identified; detailed medical information was available for 9,801 (95%) and serotyping for 9411 (91%). Among 8658 adult cases, 4,273 (49%) were in those aged 15–64 years, and 4,285 (51%) in those aged >645 years. The most common diagnoses were pneumonia (5,978/8,025, 74%) and bacteremia without focus (1,030, 13%); 470 (4.6%) cases had meningitis; the case fatality rate (CFR) was 21%. The incidence of disease due to STs in PCV13 in adults declined from 7.0/100,000/year 2001 to 2.9/100,000/year in 2015–2018 and was stable from 2015–2018 (Figure 1). The incidence was > 5/100,000/year in non-IC patients over 65 years, and younger patients with cancer and kidney disease (Figure 2). In IPD from 2015 to 2018, adult patients with PCV13 ST disease were younger (median age 64 years vs. 67 years, P = .03) than other patients; there was no significant difference in the proportion with at least one underlying chronic condition (253, 69% PCV13ST, vs. 541,74% other ST, P = 0.08), or in CFR (59, 16% PCV13 vs. 145, 20% other, P = 0.13). The ST distribution of cases due to PCV13 STs is shown in Figure 3. Conclusion A significant burden of IPD due to PCV13 serotypes persists in adults in our population despite 8 years of routine pediatric PCV13 vaccination. This burden needs to be considered in assessing the value and cost-effectiveness of PCV programs for adults. Disclosures All authors: No reported disclosures.
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- 2019
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49. Health care-associated infections in Canadian hospitals: still a major problem
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Matthew P. Muller, Gary Garber, and Jennie Johnstone
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Canada ,Cross Infection ,medicine.medical_specialty ,business.industry ,Research ,education ,010102 general mathematics ,General Medicine ,01 natural sciences ,Health care associated ,Hospitals ,03 medical and health sciences ,0302 clinical medicine ,Surveys and Questionnaires ,Family medicine ,Health care ,Prevalence ,Humans ,Medicine ,030212 general & internal medicine ,0101 mathematics ,business ,health care economics and organizations - Abstract
BACKGROUND: Health care–associated infections are a common cause of patient morbidity and mortality. We sought to describe the trends in these infections in acute care hospitals, using data from 3 national point-prevalence surveys. METHODS: The Canadian Nosocomial Infection Surveillance Program (CNISP) conducted descriptive point-prevalence surveys to assess the burden of health care–associated infections on a single day in February of 2002, 2009 and 2017. Surveyed infections included urinary tract infection, pneumonia, Clostridioides difficile infection, infection at surgical sites and bloodstream infections. We compared the prevalence of infection across the survey years and considered the contribution of antimicrobial-resistant organisms as a cause of these infections. RESULTS: We surveyed 28 of 33 (response rate 84.8%) CNISP hospitals (6747 patients) in 2002, 39 of 55 (response rate 71.0%) hospitals (8902 patients) in 2009 and 47 of 66 (response rate 71.2%) hospitals (9929 patients) in 2017. The prevalence of patients with at least 1 health care–associated infection increased from 9.9% in 2002 (95% confidence interval [CI] 8.4%–11.5%) to 11.3% in 2009 (95% CI 9.4%–13.5%), and then declined to 7.9% in 2017 (95% CI 6.8%–9.0%). In 2017, device-associated infections accounted for 35.6% of all health care–associated infections. Methicillin-resistant Staphylococcus aureus (MRSA) accounted for 3.9% of all organisms identified from 2002 to 2017; other antibiotic-resistant organisms were uncommon causes of infection for all survey years. INTERPRETATION: In CNISP hospitals, there was a decline in the prevalence of health care–associated infection in 2017 compared with previous surveys. However, strategies to prevent infections associated with medical devices should be developed. Apart from MRSA, few infections were caused by antibiotic-resistant organisms.
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- 2019
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50. Previous Antibiotic Exposure and Antimicrobial Resistance in Invasive Pneumococcal Disease: Results From Prospective Surveillance
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Matthew P. Muller, Reena Lovinsky, Karen Green, Mahin Baqi, Donald E. Low, Wallis Rudnick, Andrew E. Simor, Altynay Shigayeva, Stefan P. Kuster, Sharon Walmsley, Wayne L. Gold, Neil Rau, Jeff Powis, and Allison McGeer
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Adult ,Male ,Microbiology (medical) ,Canada ,medicine.medical_specialty ,Time Factors ,Adolescent ,medicine.drug_class ,Cephalosporin ,Antibiotics ,Microbial Sensitivity Tests ,Drug resistance ,Azithromycin ,Pneumococcal Infections ,Microbiology ,Young Adult ,Antibiotic resistance ,Internal medicine ,Drug Resistance, Bacterial ,Prevalence ,medicine ,Humans ,Prospective Studies ,Child ,Aged ,Aged, 80 and over ,business.industry ,Broth microdilution ,Infant, Newborn ,Infant ,Odds ratio ,Middle Aged ,Anti-Bacterial Agents ,Penicillin ,Streptococcus pneumoniae ,Infectious Diseases ,Child, Preschool ,Epidemiological Monitoring ,Female ,business ,medicine.drug - Abstract
Background Estimating the risk of antibiotic resistance is important in selecting empiric antibiotics. We asked how the timing, number of courses, and duration of antibiotic therapy in the previous 3 months affected antibiotic resistance in isolates causing invasive pneumococcal disease (IPD). Methods We conducted prospective surveillance for IPD in Toronto, Canada, from 2002 to 2011. Antimicrobial susceptibility was measured by broth microdilution. Clinical information, including prior antibiotic use, was collected by chart review and interview with patients and prescribers. Results Clinical information and antimicrobial susceptibility were available for 4062 (90%) episodes; 1193 (29%) of episodes were associated with receipt of 1782 antibiotic courses in the prior 3 months. Selection for antibiotic resistance was class specific. Time elapsed since most recent antibiotic was inversely associated with resistance (cephalosporins: adjusted odds ratio [OR] per day, 0.98; 95% confidence interval [CI], .96-1.00; P = .02; macrolides: OR, 0.98; 95% CI, .96-.99; P = .005; penicillins: OR [log(days)], 0.62; 95% CI, .44-.89; P = .009; fluoroquinolones: profile penalized-likelihood OR [log(days)], 0.62; 95% CI, .39-1.04; P = .07). Risk of resistance after exposure declined most rapidly for fluoroquinolones and penicillins and reached baseline in 2-3 months. The decline in resistance was slowest for macrolides, and in particular for azithromycin. There was no significant association between duration of therapy and resistance for any antibiotic class. Too few patients received multiple courses of the same antibiotic class to assess the significance of repeat courses. Conclusions Time elapsed since last exposure to a class of antibiotics is the most important factor predicting antimicrobial resistance in pneumococci. The duration of effect is longer for macrolides than other classes.
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- 2014
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