26 results on '"Marjo Malinen"'
Search Results
2. Increased secretion of adipocyte-derived extracellular vesicles is associated with adipose tissue inflammation and the mobilization of excess lipid in human obesity
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Johanna Matilainen, Viivi Berg, Maija Vaittinen, Ulla Impola, Anne-Mari Mustonen, Ville Männistö, Marjo Malinen, Veera Luukkonen, Natalia Rosso, Tanja Turunen, Pirjo Käkelä, Silvia Palmisano, Uma Thanigai Arasu, Sanna P. Sihvo, Niina Aaltonen, Kai Härkönen, Andrea Caddeo, Dorota Kaminska, Päivi Pajukanta, Minna U. Kaikkonen, Claudio Tiribelli, Reijo Käkelä, Saara Laitinen, Jussi Pihlajamäki, Petteri Nieminen, and Kirsi Rilla
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Adipocyte ,Adipose tissue ,Extracellular vesicles ,Fatty acids ,Inflammation ,Obesity ,Medicine - Abstract
Abstract Background Obesity is a worldwide epidemic characterized by adipose tissue (AT) inflammation. AT is also a source of extracellular vesicles (EVs) that have recently been implicated in disorders related to metabolic syndrome. However, our understanding of mechanistic aspect of obesity’s impact on EV secretion from human AT remains limited. Methods We investigated EVs from human Simpson Golabi Behmel Syndrome (SGBS) adipocytes, and from AT as well as plasma of subjects undergoing bariatric surgery. SGBS cells were treated with TNFα, palmitic acid, and eicosapentaenoic acid. Various analyses, including nanoparticle tracking analysis, electron microscopy, high-resolution confocal microscopy, and gas chromatography–mass spectrometry, were utilized to study EVs. Plasma EVs were analyzed with imaging flow cytometry. Results EVs from mature SGBS cells differed significantly in size and quantity compared to preadipocytes, disagreeing with previous findings in mouse adipocytes and indicating that adipogenesis promotes EV secretion in human adipocytes. Inflammatory stimuli also induced EV secretion, and altered EV fatty acid (FA) profiles more than those of cells, suggesting the role of EVs as rapid responders to metabolic shifts. Visceral AT (VAT) exhibited higher EV secretion compared to subcutaneous AT (SAT), with VAT EV counts positively correlating with plasma triacylglycerol (TAG) levels. Notably, the plasma EVs of subjects with obesity contained a higher number of adiponectin-positive EVs than those of lean subjects, further demonstrating higher AT EV secretion in obesity. Moreover, plasma EV counts of people with obesity positively correlated with body mass index and TNF expression in SAT, connecting increased EV secretion with AT expansion and inflammation. Finally, EVs from SGBS adipocytes and AT contained TAGs, and EV secretion increased despite signs of less active lipolytic pathways, indicating that AT EVs could be involved in the mobilization of excess lipids into circulation. Conclusions We are the first to provide detailed FA profiles of human AT EVs. We report that AT EV secretion increases in human obesity, implicating their role in TAG transport and association with adverse metabolic parameters, thereby emphasizing their role in metabolic disorders. These findings promote our understanding of the roles that EVs play in human AT biology and metabolic disorders.
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- 2024
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3. Secreted factors from M1 macrophages drive prostate cancer stem cell plasticity by upregulating NANOG, SOX2, and CD44 through NFκB-signaling
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Kirsi Kainulainen, Einari A. Niskanen, Johanna Kinnunen, Kaisa Mäki-Mantila, Kiia Hartikainen, Ville Paakinaho, Marjo Malinen, Kirsi Ketola, and Sanna Pasonen-Seppänen
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Cancer cell plasticity ,prostate cancer ,tumor-associated macrophages ,Immunologic diseases. Allergy ,RC581-607 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
The inflammatory tumor microenvironment (TME) is a key driver for tumor-promoting processes. Tumor-associated macrophages are one of the main immune cell types in the TME and their increased density is related to poor prognosis in prostate cancer. Here, we investigated the influence of pro-inflammatory (M1) and immunosuppressive (M2) macrophages on prostate cancer lineage plasticity. Our findings reveal that M1 macrophage secreted factors upregulate genes related to stemness while downregulating genes associated with androgen response in prostate cancer cells. The expression of cancer stem cell (CSC) plasticity markers NANOG, KLF4, SOX2, OCT4, and CD44 was stimulated by the secreted factors from M1 macrophages. Moreover, AR and its target gene PSA were observed to be suppressed in LNCaP cells treated with secreted factors from M1 macrophages. Inhibition of NFκB signaling using the IKK16 inhibitor resulted in downregulation of NANOG, SOX2, and CD44 and CSC plasticity. Our study highlights that the secreted factors from M1 macrophages drive prostate cancer cell plasticity by upregulating the expression of CSC plasticity markers through NFκB signaling pathway.
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- 2024
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4. DPYSL5 is highly expressed in treatment-induced neuroendocrine prostate cancer and promotes lineage plasticity via EZH2/PRC2
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Roosa Kaarijärvi, Heidi Kaljunen, Lucia Nappi, Ladan Fazli, Sonia H. Y. Kung, Jaana M. Hartikainen, Ville Paakinaho, Janne Capra, Kirsi Rilla, Marjo Malinen, Petri I. Mäkinen, Seppo Ylä-Herttuala, Amina Zoubeidi, Yuzhuo Wang, Martin E. Gleave, Mikko Hiltunen, and Kirsi Ketola
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Biology (General) ,QH301-705.5 - Abstract
Abstract Treatment-induced neuroendocrine prostate cancer (t-NEPC) is a lethal subtype of castration-resistant prostate cancer resistant to androgen receptor (AR) inhibitors. Our study unveils that AR suppresses the neuronal development protein dihydropyrimidinase-related protein 5 (DPYSL5), providing a mechanism for neuroendocrine transformation under androgen deprivation therapy. Our unique CRPC-NEPC cohort, comprising 135 patient tumor samples, including 55 t-NEPC patient samples, exhibits a high expression of DPYSL5 in t-NEPC patient tumors. DPYSL5 correlates with neuroendocrine-related markers and inversely with AR and PSA. DPYSL5 overexpression in prostate cancer cells induces a neuron-like phenotype, enhances invasion, proliferation, and upregulates stemness and neuroendocrine-related markers. Mechanistically, DPYSL5 promotes prostate cancer cell plasticity via EZH2-mediated PRC2 activation. Depletion of DPYSL5 decreases proliferation, induces G1 phase cell cycle arrest, reverses neuroendocrine phenotype, and upregulates luminal genes. In conclusion, DPYSL5 plays a critical role in regulating prostate cancer cell plasticity, and we propose the AR/DPYSL5/EZH2/PRC2 axis as a driver of t-NEPC progression.
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- 2024
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5. Lack of androgen receptor SUMOylation results in male infertility due to epididymal dysfunction
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Fu-Ping Zhang, Marjo Malinen, Arfa Mehmood, Tiina Lehtiniemi, Tiina Jääskeläinen, Einari A. Niskanen, Hanna Korhonen, Asta Laiho, Laura L. Elo, Claes Ohlsson, Noora Kotaja, Matti Poutanen, Petra Sipilä, and Jorma J. Palvimo
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Science - Abstract
SUMOylation is known to regulate androgen receptor (AR) activity in cultured cells. Here, using SUMOylation-deficient AR knock-in mice, the authors demonstrate that SUMOylation is required for AR-related gene expression specifically in the epididymal tissues, but not the testis.
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- 2019
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6. Seminal-Plasma-Mediated Effects on Sperm Performance in Humans
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Tanja Turunen, Martina Magris, Marjo Malinen, and Jukka Kekäläinen
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fertilization ,infertility ,protein ,reproduction ,seminal plasma ,sperm ,Cytology ,QH573-671 - Abstract
Seminal plasma (SP) plays a crucial role in reproduction and contains a large number of proteins, many of which may potentially modify sperm functionality. To evaluate the effects of SP identity and its protein composition on human sperm function, we treated the sperm of several males with either their own or multiple foreign SPs in all possible sperm–SP combinations (full-factorial design). Then we recorded sperm motility and viability in these combinations and investigated whether the sperm performance is dependent on sperm and SP identity (or their interaction). Finally, we studied whether the above-mentioned sperm traits are affected by the abundance of three SP proteins, dipeptidyl peptidase-4 (DPP4), neutral endopeptidase (NEP), and aminopeptidase N (APN). The identity of the SP donor affected sperm swimming velocity, viability, and the proportion of hyperactivated sperm, but males’ own SP was not consistently more beneficial for sperm than foreign SPs. Furthermore, we show that sperm performance is also partly affected by the interaction between sperm and SP donor. Finally, we found that DPP4 and NEP levels in SP were positively associated with sperm swimming velocity and hyperactivation. Taken together, our results highlight the importance of seminal plasma as a potential source of biomarkers for diagnostics and therapeutic interventions for male-derived infertility.
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- 2022
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7. Fatty Acid Fingerprints and Hyaluronic Acid in Extracellular Vesicles from Proliferating Human Fibroblast-like Synoviocytes
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Anne-Mari Mustonen, Tommi Paakkonen, Johanna Matilainen, Kirsi Rilla, Reijo Käkelä, Marjo Malinen, Piia Takabe, Sanna Oikari, Janne Capra, Sanna P. Sihvo, Pauliina Ryökäs, and Petteri Nieminen
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arthritis ,extracellular vesicle ,fatty acid ,fibroblast-like synoviocyte ,hyaluronan ,joint disease ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Extracellular vesicles (EVs) function as conveyors of fatty acids (FAs) and other bioactive lipids and can modulate the gene expression and behavior of target cells. EV lipid composition influences the fluidity and stability of EV membranes and reflects the availability of lipid mediator precursors. Fibroblast-like synoviocytes (FLSs) secrete EVs that transport hyaluronic acid (HA). FLSs play a central role in inflammation, pannus formation, and cartilage degradation in joint diseases, and EVs have recently emerged as potential mediators of these effects. The aim of the present study was to follow temporal changes in HA and EV secretion by normal FLSs, and to characterize the FA profiles of FLSs and EVs during proliferation. The methods used included nanoparticle tracking analysis, confocal laser scanning microscopy, sandwich-type enzyme-linked sorbent assay, quantitative PCR, and gas chromatography. The expression of hyaluronan synthases 1–3 in FLSs and HA concentrations in conditioned media decreased during cell proliferation. This was associated with elevated proportions of 20:4n-6 and total n-6 polyunsaturated FAs (PUFAs) in high-density cells, reductions in n-3/n-6 PUFA ratios, and up-regulation of cluster of differentiation 44, tumor necrosis factor α, peroxisome proliferator-activated receptor (PPAR)-α, and PPAR-γ. Compared to the parent FLSs, 16:0, 18:0, and 18:1n-9 were enriched in the EV fraction. EV counts decreased during cell growth, and 18:2n-6 in EVs correlated with the cell count. To conclude, FLS proliferation was featured by increased 20:4n-6 proportions and reduced n-3/n-6 PUFA ratios, and FAs with a low degree of unsaturation were selectively transferred from FLSs into EVs. These FA modifications have the potential to affect membrane fluidity, biosynthesis of lipid mediators, and inflammatory processes in joints, and could eventually provide tools for translational studies to counteract cartilage degradation in inflammatory joint diseases.
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- 2022
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8. Sperm Physiological Response to Female Serum—Potential New Insights into the Reproductive Incompatibility Diagnostics
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Aleksandra Łukasiewicz, Kari Huhta, Jarmo Ritari, Juha Peräsaari, Pia Allinen, Marjo Malinen, Annalaura Jokiniemi, Tanja Turunen, Jukka Partanen, and Jukka Kekäläinen
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sperm function ,sexual selection ,genetic compatibility ,MHC ,cryptic female choice ,infertility ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Infertility is assumed to arise exclusively from male- and female-dependent pathological factors. However, recent studies have indicated that reproductive failure may also result from the reproductive incompatibility of the partners. Selection against such incompatibilities likely occurs via female-derived reproductive secretions, including follicular fluid (FF), that mediate gamete-level mate choice towards the sperm of specific males. To facilitate potential development of diagnostic tests for human reproductive incompatibility, we examined whether sperm physiological response to female serum indicate male–female compatibility in the presence of FF. We performed a full-factorial experiment, in which the sperm of 10 males were treated with the FF and serum of 6 healthy females. We found that sperm motility and viability in both biofluids were highly similar and that in 70% of the males, sperm serum treatment predicted male–female compatibility. We also identified male human leucocyte antigen (HLA) alleles and female (FF and serum) anti-HLA antibodies and tested whether the number of allele–antibody matches predict sperm physiological response to female fluids. However, no association was found between measured sperm traits and the number of allele–antibody matches. Overall, the present results may open novel possibilities for the future development of reproductive incompatibility tests and may pave the way towards more accurate infertility diagnostics and treatments.
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- 2022
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9. Female‐induced selective modification of sperm protein SUMOylation—potential mechanistic insights into the non‐random fertilization in humans
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Jukka Kekäläinen, Johannes Hiltunen, Annalaura Jokiniemi, Liisa Kuusipalo, Marjo Heikura, Jonna Leppänen, and Marjo Malinen
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Male ,Germ Cells ,Fertilization ,Sperm Motility ,Humans ,Sumoylation ,Female ,Spermatozoa ,Ecology, Evolution, Behavior and Systematics - Abstract
In many species, mate choice continues after the mating via female- or egg-derived biochemical factors that induce selective changes in sperm pre-fertilization physiology and behaviour. Recent studies have indicated that gamete-mediated mate choice likely occurs also in humans, but the mechanistic basis of the process has remained virtually unexplored. Here, we investigated whether female-induced modifications in sperm protein SUMOylation (post-translational modification of the proteome) could serve as a novel mechanism for gamete-mediated mate choice in humans. We treated the sperm of ten males with the oocyte-surrounding bioactive liquid (follicular fluid) of five females and investigated motility, viability and global protein SUMOylation status of the sperm in all (n = 50) of these male-female combinations (full-factorial design). All the measured sperm traits were affected by male-female combinations, and sperm protein SUMOylation status was also negatively associated with sperm motility. Furthermore, our results indicate that female-induced sperm protein SUMOylation is selective, potentially allowing females to increase sperm motility in some males, whereas decreasing it in the others. Consequently, our findings suggest that follicular fluid may non-randomly modify the structure and function of sperm proteome and in this way facilitate gamete-mediated mate choice in humans and possibly many other species. However, due to the relatively low number of female subjects and their potential infertility problems, our results should be replicated with larger subset of fully fertile women.
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- 2022
10. Seminal-Plasma-Mediated Effects on Sperm Performance in Humans
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Kekäläinen, Tanja Turunen, Martina Magris, Marjo Malinen, and Jukka
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fertilization ,infertility ,protein ,reproduction ,seminal plasma ,sperm - Abstract
Seminal plasma (SP) plays a crucial role in reproduction and contains a large number of proteins, many of which may potentially modify sperm functionality. To evaluate the effects of SP identity and its protein composition on human sperm function, we treated the sperm of several males with either their own or multiple foreign SPs in all possible sperm–SP combinations (full-factorial design). Then we recorded sperm motility and viability in these combinations and investigated whether the sperm performance is dependent on sperm and SP identity (or their interaction). Finally, we studied whether the above-mentioned sperm traits are affected by the abundance of three SP proteins, dipeptidyl peptidase-4 (DPP4), neutral endopeptidase (NEP), and aminopeptidase N (APN). The identity of the SP donor affected sperm swimming velocity, viability, and the proportion of hyperactivated sperm, but males’ own SP was not consistently more beneficial for sperm than foreign SPs. Furthermore, we show that sperm performance is also partly affected by the interaction between sperm and SP donor. Finally, we found that DPP4 and NEP levels in SP were positively associated with sperm swimming velocity and hyperactivation. Taken together, our results highlight the importance of seminal plasma as a potential source of biomarkers for diagnostics and therapeutic interventions for male-derived infertility.
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- 2022
- Full Text
- View/download PDF
11. Sperm Physiological Response to Female Serum—Potential New Insights into the Reproductive Incompatibility Diagnostics
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Kekäläinen, Aleksandra Łukasiewicz, Kari Huhta, Jarmo Ritari, Juha Peräsaari, Pia Allinen, Marjo Malinen, Annalaura Jokiniemi, Tanja Turunen, Jukka Partanen, and Jukka
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sperm function ,sexual selection ,genetic compatibility ,MHC ,cryptic female choice ,infertility ,egg donor ,fertilization - Abstract
Infertility is assumed to arise exclusively from male- and female-dependent pathological factors. However, recent studies have indicated that reproductive failure may also result from the reproductive incompatibility of the partners. Selection against such incompatibilities likely occurs via female-derived reproductive secretions, including follicular fluid (FF), that mediate gamete-level mate choice towards the sperm of specific males. To facilitate potential development of diagnostic tests for human reproductive incompatibility, we examined whether sperm physiological response to female serum indicate male–female compatibility in the presence of FF. We performed a full-factorial experiment, in which the sperm of 10 males were treated with the FF and serum of 6 healthy females. We found that sperm motility and viability in both biofluids were highly similar and that in 70% of the males, sperm serum treatment predicted male–female compatibility. We also identified male human leucocyte antigen (HLA) alleles and female (FF and serum) anti-HLA antibodies and tested whether the number of allele–antibody matches predict sperm physiological response to female fluids. However, no association was found between measured sperm traits and the number of allele–antibody matches. Overall, the present results may open novel possibilities for the future development of reproductive incompatibility tests and may pave the way towards more accurate infertility diagnostics and treatments.
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- 2022
- Full Text
- View/download PDF
12. BCOR modulates transcriptional activity of a subset of glucocorticoid receptor target genes involved in cell growth and mobility
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Jorma J. Palvimo, Einari A. Niskanen, Marjo Malinen, Markku Varjosalo, Joanna K. Lempiäinen, A.B.M. Kaiser Manjur, Institute of Biotechnology, Biosciences, and Molecular Systems Biology
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0301 basic medicine ,Endocrinology, Diabetes and Metabolism ,Clinical Biochemistry ,Biochemistry ,Dexamethasone ,0302 clinical medicine ,Endocrinology ,PROGRAMS ,Cell Movement ,Transcriptional regulation ,Protein Interaction Maps ,Nuclear receptor co-repressor 1 ,Nuclear receptor corepressor 1 (NCOR1) ,Chemistry ,Chromatin binding ,PROLIFERATION ,INHIBITOR ,Transcription regulation ,Coregulator ,Cell biology ,Enhancer Elements, Genetic ,030220 oncology & carcinogenesis ,Molecular Medicine ,Chromatin Immunoprecipitation ,Repressor ,KAPPA-B ,MECHANISMS ,03 medical and health sciences ,Receptors, Glucocorticoid ,INFLAMMATION ,Proto-Oncogene Proteins ,Humans ,Nuclear Receptor Co-Repressor 1 ,Enhancer ,Molecular Biology ,Transcription factor ,Cell Proliferation ,Binding Sites ,COMPLEX ,MUTATIONS ,Glucocorticoid receptor (GR) ,Cell Biology ,BCL6 corepressor (BCOR) ,Repressor Proteins ,HEK293 Cells ,030104 developmental biology ,Gene Expression Regulation ,Nuclear receptor ,MEDULLOBLASTOMA ,1182 Biochemistry, cell and molecular biology ,Corepressor - Abstract
Glucocorticoid (GC) receptor (GR) is a key transcription factor (TF) that regulates vital metabolic and antiinflammatory processes. We have identified BCL6 corepressor (BCOR) as a dexamethasone-stimulated interaction partner of GR. BCOR is a component of non-canonical polycomb repressor complex 1.1 (ncPCR1.1) and linked to different developmental disorders and cancers, but the role of BCOR in GC signaling is poorly characterized. Here, using ChIP-seq we show that, GC induces genome-wide redistribution of BCOR chromatin binding towards GR-occupied enhancers in HEK293 cells. As assessed by RNA-seq, depletion of BCOR altered the expression of hundreds of GC-regulated genes, especially the ones linked to TNF signaling, GR signaling and cell migration pathways. Biotinylation-based proximity mapping revealed that GR and BCOR share several interacting partners, including nuclear receptor corepressor NCOR1. ChIP-seq showed that the NCOR1 co-occurs with both BCOR and GR on a subset of enhancers upon GC treatment. Simultaneous depletion of BCOR and NCOR1 influenced GR target gene expression in a combinatorial and gene-specific manner. Finally, we show using live cell imaging that the depletion of BCOR together with NCOR1 markedly enhances cell migration. Collectively, our data suggest BCOR as an important gene and pathway selective coregulator of GR transcriptional activity.
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- 2021
13. A long hypoxia-inducible factor 3 isoform 2 is a transcription activator that regulates erythropoietin
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Gong-Hong Wei, Minna Heikkilä, Jorma J. Palvimo, Marjo Malinen, Hang-Mao Lee, Jussi-Pekka Tolonen, and Johanna Myllyharju
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Erythropoietin Chromatin immunoprecipitation ,Gene isoform ,Transcriptional Activation ,Bone Morphogenetic Protein 6 ,RNA Splicing ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,Transactivation ,0302 clinical medicine ,Transcription (biology) ,Cell Line, Tumor ,Oxygen homeostasis ,Gene silencing ,Humans ,Protein Isoforms ,RNA, Small Interfering ,Promoter Regions, Genetic ,Molecular Biology ,Erythropoietin ,030304 developmental biology ,Hypoxia response ,Pharmacology ,Hypoxia response element ,0303 health sciences ,Glucose Transporter Type 1 ,Chemistry ,Cell Biology ,Chromatin immunoprecipitation ,Cell Hypoxia ,Chromatin ,Cell biology ,HIF3A ,Repressor Proteins ,Serum Amyloid P-Component ,C-Reactive Protein ,Hypoxia-inducible factors ,030220 oncology & carcinogenesis ,Transcription activator ,Molecular Medicine ,Original Article ,RNA Interference ,Hypoxia-inducible factor 3 isoform ,Apoptosis Regulatory Proteins ,Dimerization ,Protein Binding - Abstract
Hypoxia-inducible factor (HIF), an αβ dimer, is the master regulator of oxygen homeostasis with hundreds of hypoxia-inducible target genes. Three HIF isoforms differing in the oxygen-sensitive α subunit exist in vertebrates. While HIF-1 and HIF-2 are known transcription activators, HIF-3 has been considered a negative regulator of the hypoxia response pathway. However, the humanHIF3AmRNA is subject to complex alternative splicing. It was recently shown that the long HIF-3α variants can form αβ dimers that possess transactivation capacity. Here, we show that overexpression of the long HIF-3α2 variant induces the expression of a subset of genes, including the erythropoietin (EPO) gene, while simultaneous downregulation of all HIF-3α variants by siRNA targeting a sharedHIF3Aregion leads to downregulation ofEPOand additional genes. EPO mRNA and protein levels correlated withHIF3Asilencing and HIF-3α2 overexpression. Chromatin immunoprecipitation analyses showed that HIF-3α2 binding associated with canonical hypoxia response elements in the promoter regions ofEPO. Luciferase reporter assays showed that the identified HIF-3α2 chromatin-binding regions were sufficient to promote transcription by all three HIF-α isoforms. Based on these data, HIF-3α2 is a transcription activator that directly regulatesEPOexpression.
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- 2019
14. Cyclin-dependent kinase 5 acts as a critical determinant of AKT-dependent proliferation and regulates differential gene expression by the androgen receptor in prostate cancer cells
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Susumu Y. Imanishi, Fanny Örn, Mika Remes, John E. Eriksson, Jorma J. Palvimo, Elin Torvaldson, Julia Lindqvist, Marjo Malinen, and Terveystieteiden tiedekunta
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Male ,Cellular differentiation ,Biology ,Prostate cancer ,medicine ,Humans ,Phosphorylation ,Molecular Biology ,Protein kinase B ,Transcription factor ,Cell Proliferation ,Cell growth ,Prostatic Neoplasms ,Cyclin-Dependent Kinase 5 ,Articles ,Cell Biology ,Cell cycle ,medicine.disease ,Cell biology ,Gene Expression Regulation, Neoplastic ,Androgen receptor ,nervous system ,Receptors, Androgen ,Cell Biology of Disease ,Signal transduction ,Proto-Oncogene Proteins c-akt ,Signal Transduction - Abstract
Article, Contrary to cell cycle–associated cyclin-dependent kinases, CDK5 is best known for its regulation of signaling processes in differentiated cells and its destructive activation in Alzheimer's disease. Recently, CDK5 has been implicated in a number of different cancers, but how it is able to stimulate cancer-related signaling pathways remains enigmatic. Our goal was to study the cancer-promoting mechanisms of CDK5 in prostate cancer. We observed that CDK5 is necessary for proliferation of several prostate cancer cell lines. Correspondingly, there was considerable growth promotion when CDK5 was overexpressed. When examining the reasons for the altered proliferation effects, we observed that CDK5 phosphorylates S308 on the androgen receptor (AR), resulting in its stabilization and differential expression of AR target genes including several growth-priming transcription factors. However, the amplified cell growth was found to be separated from AR signaling, further corroborated by CDK5-depdent proliferation of AR null cells. Instead, we found that the key growth-promoting effect was due to specific CDK5-mediated AKT activation. Down-regulation of CDK5 repressed AKT phosphorylation by altering its intracellular localization, immediately followed by prominent cell cycle inhibition. Taken together, these results suggest that CDK5 acts as a crucial signaling hub in prostate cancer cells by controlling androgen responses through AR, maintaining and accelerating cell proliferation through AKT activation, and releasing cell cycle breaks., Publisher version, http://purl.org/eprint/status/PeerReviewed
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- 2015
15. SUMO ligase PIAS1 functions as a target gene selective androgen receptor coregulator on prostate cancer cell chromatin
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Miia M. Rytinki, Biswajyoti Sahu, Jorma J. Palvimo, Marjo Malinen, Sari Toropainen, Tiina Jääskeläinen, Sanna Kaikkonen, Olli A. Jänne, Research Programs Unit, Medicum, Department of Physiology, and Genome-Scale Biology (GSB) Research Program
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EXPRESSION ,Hepatocyte Nuclear Factor 3-alpha ,Male ,PROTEINS ,Ubiquitin-Protein Ligases ,education ,3122 Cancers ,Biology ,MECHANISMS ,ACTIVATION ,Prostate cancer ,Cell Line, Tumor ,BINDING ,Genetics ,medicine ,Humans ,BIOSYNTHESIS ,Transcription factor ,Cell Proliferation ,Regulation of gene expression ,Binding Sites ,TRANSCRIPTIONAL REGULATION ,RESPONSE ELEMENT ,Chromatin binding ,Pioneer factor ,Gene regulation, Chromatin and Epigenetics ,CHIP-SEQ ,Prostatic Neoplasms ,medicine.disease ,Protein Inhibitors of Activated STAT ,Chromatin ,Androgen receptor ,Gene Expression Regulation, Neoplastic ,SUMOYLATION ,Receptors, Androgen ,Cancer research ,Small Ubiquitin-Related Modifier Proteins ,3111 Biomedicine ,FOXA1 - Abstract
Androgen receptor (AR) is a ligand-activated transcription factor that plays a central role in the development and growth of prostate carcinoma. PIAS1 is an AR- and SUMO-interacting protein and a putative transcriptional coregulator overexpressed in prostate cancer. To study the importance of PIAS1 for the androgen-regulated transcriptome of VCaP prostate cancer cells, we silenced its expression by RNAi. Transcriptome analyses revealed that a subset of the AR-regulated genes is significantly influenced, either activated or repressed, by PIAS1 depletion. Interestingly, PIAS1 depletion also exposed a new set of genes to androgen regulation, suggesting that PIAS1 can mask distinct genomic loci from AR access. In keeping with gene expression data, silencing of PIAS1 attenuated VCaP cell proliferation. ChIP-seq analyses showed that PIAS1 interacts with AR at chromatin sites harboring also SUMO2/3 and surrounded by H3K4me2; androgen exposure increased the number of PIAS1-occupying sites, resulting in nearly complete overlap with AR chromatin binding events. PIAS1 interacted also with the pioneer factor FOXA1. Of note, PIAS1 depletion affected AR chromatin occupancy at binding sites enriched for HOXD13 and GATA motifs. Taken together, PIAS1 is a genuine chromatin-bound AR coregulator that functions in a target gene selective fashion to regulate prostate cancer cell growth.
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- 2014
16. SUMOylation modulates the transcriptional activity of androgen receptor in a target gene and pathway selective manner
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Jorma J. Palvimo, Marjo Malinen, Sami Heikkinen, and Päivi Sutinen
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Male ,Protein sumoylation ,Regulation of gene expression ,Transcription, Genetic ,Gene regulation, Chromatin and Epigenetics ,HEK 293 cells ,SUMO protein ,Prostatic Neoplasms ,Sumoylation ,Apoptosis ,Biology ,Molecular biology ,Chromatin ,Gene Expression Regulation, Neoplastic ,Androgen receptor ,HEK293 Cells ,Receptors, Androgen ,Cell Line, Tumor ,Gene expression ,Genetics ,Humans ,FOXA1 ,Cell Proliferation - Abstract
Androgen receptor (AR) plays an important regulatory role in prostate cancer. AR's transcriptional activity is regulated by androgenic ligands, but also by post-translational modifications, such as SUMOylation. To study the role of AR SUMOylation in genuine chromatin environment, we compared androgen-regulated gene expression and AR chromatin occupancy in PC-3 prostate cancer cell lines stably expressing wild-type (wt) or doubly SUMOylation site-mutated AR (AR-K386R,K520R). Our genome-wide gene expression analyses reveal that the SUMOylation modulates the AR function in a target gene and pathway selective manner. The transcripts that are differentially regulated by androgen and SUMOylation are linked to cellular movement, cell death, cellular proliferation, cellular development and cell cycle. Fittingly, SUMOylation mutant AR cells proliferate faster and are more sensitive to apoptosis. Moreover, ChIP-seq analyses show that the SUMOylation can modulate the chromatin occupancy of AR on many loci in a fashion that parallels their differential androgen-regulated expression. De novo motif analyses reveal that FOXA1, C/EBP and AP-1 motifs are differentially enriched at the wtAR- and the AR-K386R,K520R-preferred genomic binding positions. Taken together, our data indicate that SUMOylation does not simply repress the AR activity, but it regulates AR's interaction with the chromatin and the receptor's target gene selection.
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- 2014
17. Global analysis of transcription in castration-resistant prostate cancer cells uncovers active enhancers and direct androgen receptor targets
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Marjo Malinen, Päivi Sutinen, Jorma J. Palvimo, Sari Toropainen, Minna U. Kaikkonen, Einari A. Niskanen, and A.I. Virtanen -instituutti / Bioteknologia ja molekulaarinen lääketiede
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Male ,0301 basic medicine ,Transcription, Genetic ,medicine.drug_class ,Transcriptional regulatory elements ,Enhancer RNAs ,Biology ,urologic and male genital diseases ,Models, Biological ,Article ,03 medical and health sciences ,Prostate cancer ,Transcription (biology) ,Cell Line, Tumor ,medicine ,Humans ,RNA, Neoplasm ,Insulin-Like Growth Factor I ,Enhancer ,Transcription factor ,Cell Proliferation ,Binding Sites ,Multidisciplinary ,Epidermal Growth Factor ,Androgen ,medicine.disease ,Molecular biology ,Chromatin ,Neoplasm Proteins ,Up-Regulation ,Cell biology ,Gene Expression Regulation, Neoplastic ,Androgen receptor ,Prostatic Neoplasms, Castration-Resistant ,Enhancer Elements, Genetic ,030104 developmental biology ,Receptors, Androgen ,Androgens ,Protein Binding ,Signal Transduction - Abstract
Article, Androgen receptor (AR) is a male sex steroid-activated transcription factor (TF) that plays a critical role in prostate cancers, including castration-resistant prostate cancers (CRPC) that typically express amplified levels of the AR. CRPC-derived VCaP cells display an excessive number of chromatin AR-binding sites (ARBs) most of which localize to distal inter- or intragenic regions. Here, we analyzed direct transcription programs of the AR in VCaP cells using global nuclear run-on sequencing (GRO-seq) and integrated the GRO-seq data with the ARB and VCaP cell-specific TF-binding data. Androgen immediately activated transcription of hundreds of protein-coding genes, including IGF-1 receptor and EGF receptor. Androgen also simultaneously repressed transcription of a large number of genes, including MYC. As functional enhancers have been postulated to produce enhancer-templated non-coding RNAs (eRNAs), we also analyzed the eRNAs, which revealed that only a fraction of the ARBs reside at functional enhancers. Activation of these enhancers was most pronounced at the sites that also bound PIAS1, ERG and HDAC3, whereas binding of HDAC3 and PIAS1 decreased at androgen-repressed enhancers. In summary, our genome-wide data of androgen-regulated enhancers and primary target genes provide new insights how the AR can directly regulate cellular growth and control signaling pathways in CPRC cells, published version, peerReviewed
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- 2016
18. Crosstalk between androgen and pro-inflammatory signaling remodels androgen receptor and NF-ĸB cistrome to reprogram the prostate cancer cell transcriptome
- Author
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Minna U. Kaikkonen, Jorma J. Palvimo, Einari A. Niskanen, Marjo Malinen, and A.I. Virtanen -instituutti / Bioteknologia ja molekulaarinen lääketiede
- Subjects
Hepatocyte Nuclear Factor 3-alpha ,Male ,0301 basic medicine ,medicine.drug_class ,Biology ,Transcriptome ,03 medical and health sciences ,Prostate cancer ,Cell Line, Tumor ,androgen receptor ,LNCaP ,Genetics ,medicine ,Cluster Analysis ,Humans ,genes ,Gene Expression Profiling ,Gene regulation, Chromatin and Epigenetics ,NF-kappa B ,Prostatic Neoplasms ,androgens ,Androgen ,medicine.disease ,prostate cancer ,Protein Inhibitors of Activated STAT ,Chromatin ,Cell biology ,Gene Expression Regulation, Neoplastic ,Androgen receptor ,Enhancer Elements, Genetic ,030104 developmental biology ,Cistrome ,Receptors, Androgen ,Androgens ,Cytokines ,chromatin ,enhancer of transcription ,Inflammation Mediators ,FOXA1 ,Signal transduction ,signal transduction - Abstract
Article, Inflammatory processes and androgen signaling are critical for the growth of prostate cancer (PC), the most common cancer among males in Western countries. To understand the importance of potential interplay between pro-inflammatory and androgen signaling for gene regulation, we have interrogated the crosstalk between androgen receptor (AR) and NF-κB, a key transcriptional mediator of inflammatory responses, by utilizing genome-wide chromatin immunoprecipitation sequencing and global run-on sequencing in PC cells. Co-stimulation of LNCaP cells with androgen and pro-inflammatory cytokine TNFα invoked a transcriptome which was very distinct from that induced by either stimulation alone. The altered transcriptome that included gene programs linked to cell migration and invasiveness was orchestrated by significant remodeling of NF-κB and AR cistrome and enhancer landscape. Although androgen multiplied the NF-κB cistrome and TNFα restrained the AR cistrome, there was no general reciprocal tethering of the AR to the NF-κB on chromatin. Instead, redistribution of FOXA1, PIAS1 and PIAS2 contributed to the exposure of latent NF-κB chromatin-binding sites and masking of AR chromatin-binding sites. Taken together, concomitant androgen and pro-inflammatory signaling significantly remodels especially the NF-κB cistrome, reprogramming the PC cell transcriptome in fashion that may contribute to the progression of PC., published version, peerReviewed
- Published
- 2016
19. Cyclical regulation of the insulin-like growth factor binding protein 3 gene in response to 1α,25-dihydroxyvitamin D3
- Author
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Marjo Malinen, Sami Väisänen, Carsten Carlberg, Merja Heinäniemi, and Jussi Ryynänen
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Male ,Periodicity ,Transcription, Genetic ,Biology ,Gene Regulation, Chromatin and Epigenetics ,Histone Deacetylase 6 ,Vitamin D Response Element ,Calcitriol receptor ,Histone Deacetylases ,Cell Line ,Histone H4 ,Calcitriol ,Genetics ,Humans ,RNA, Messenger ,Regulation of gene expression ,Middle Aged ,HDAC4 ,Molecular biology ,Chromatin ,VDRE ,Repressor Proteins ,Insulin-Like Growth Factor Binding Protein 3 ,Nuclear receptor ,Gene Expression Regulation ,Receptors, Calcitriol ,RNA Interference - Abstract
The nuclear receptor vitamin D receptor (VDR) is known to associate with two vitamin D response element (VDRE) containing chromatin regions of the insulin-like growth factor binding protein 3 (IGFBP3) gene. In non-malignant MCF-10A human mammary cells, we show that the natural VDR ligand 1α,25-dihydroxyvitamin D(3) (1α,25(OH)(2)D(3)) causes cyclical IGFBP3 mRNA accumulation with a periodicity of 60 min, while in the presence of the potent VDR agonist Gemini the mRNA is continuously accumulated. Accordingly, VDR also showed cyclical ligand-dependent association with the chromatin regions of both VDREs. Histone deacetylases (HDACs) play an important role both in VDR signalling and in transcriptional cycling. From the 11 HDAC gene family members, only HDAC4 and HDAC6 are up-regulated in a cyclical fashion in response to 1α,25(OH)(2)D(3), while even these two genes do not respond to Gemini. Interestingly, HDAC4 and HDAC6 proteins show cyclical VDR ligand-induced association with both VDRE regions of the IGFBP3 gene, which coincides with histone H4 deacetylation on these regions. Moreover, combined silencing of HDAC4 and HDAC6 abolishes the cycling of the IGFBP3 gene. We assume that due to more efficient VDR interaction, Gemini induces longer lasting chromatin activation and therefore no transcriptional cycling but monotonically increasing IGFBP3 mRNA. In conclusion, 1α,25(OH)(2)D(3) regulates IGFBP3 transcription through short-term cyclical association of VDR, HDAC4 and HDAC6 to both VDRE-containing chromatin regions.
- Published
- 2010
20. The Number of Vitamin D Receptor Binding Sites Defines the Different Vitamin D Responsiveness of the CYP24 Gene in Malignant and Normal Mammary Cells
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Sami Väisänen, Juha M. Matilainen, Marjo Malinen, Carsten Carlberg, and Mikko P. Turunen
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Time Factors ,Breast Neoplasms ,Biology ,Ligands ,Biochemistry ,Calcitriol receptor ,Epigenesis, Genetic ,Cell Line, Tumor ,Transcriptional regulation ,Humans ,Gene Regulation ,Breast ,RNA, Messenger ,Vitamin D ,Promoter Regions, Genetic ,Vitamin D3 24-Hydroxylase ,Molecular Biology ,Cell Nucleus ,Cell Biology ,Molecular biology ,Chromatin ,VDRE ,Gene Expression Regulation, Neoplastic ,Gene expression profiling ,Regulatory sequence ,Steroid Hydroxylases ,Receptors, Calcitriol ,Chromatin immunoprecipitation ,Vitamin D receptor binding - Abstract
Primary 1alpha,25-dihydroxyvitamin D(3) (1alpha,25(OH)(2)D(3))-responding genes are controlled by the vitamin D receptor (VDR) binding to specific sites (VDREs) that are located within the regulatory regions of these genes. According to previous studies, the gene encoding 25-dihydroxyvitamin D(3) 24-hydroxylase, CYP24, which is the strongest known 1alpha,25(OH)(2)D(3)-responsive gene, has multiple VDREs that locate within the proximal and the distal promoter. However, it has remained unclear, what is the biological role of these regions and how they participate in the regulation of transcription. In this study, we found a different CYP24 expression profile in normal (MCF-10A) and malignant (MCF-7) human mammary cells. Moreover, CYP24 mRNA showed to be three times more stable in MCF-7 cells than in MCF-10A cells. We studied the mechanism of this difference using expression profiling, quantitative chromatin immunoprecipitation and chromosome conformation capture assays. Interestingly, the number of functional VDREs was higher in MCF-7 cells than in MCF-10A cells. Three functional VDREs in MCF-7 cells are connected to linear mRNA accumulation, whereas only one VDRE seems to lead to stepwise CYP24 mRNA accumulation in MCF-10A cells. The distal VDREs were involved in transcriptional regulation via ligand-dependent, dynamic chromatin looping, which brings cyclically the distal elements together either individually or simultaneously next to the transcription start site. In conclusion, our data suggest that in comparison to normal cells, clearing of 1alpha,25(OH)(2)D(3) is enhanced in malignant cells due to differences in transcriptional regulation of CYP24 and metabolism of CYP24 mRNA.
- Published
- 2010
21. Distinct HDACs regulate the transcriptional response of human cyclin-dependent kinase inhibitor genes to trichostatin A and 1α,25-dihydroxyvitamin D 3
- Author
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Antti Ropponen, Tatjana Degenhardt, Carsten Carlberg, Anna Saramäki, Sami Väisänen, and Marjo Malinen
- Subjects
Cyclin-Dependent Kinase Inhibitor p21 ,Transcription, Genetic ,Antineoplastic Agents ,Breast Neoplasms ,Biology ,Hydroxamic Acids ,Calcitriol receptor ,Histone Deacetylases ,Cell Line ,Calcitriol ,Cyclin-dependent kinase ,Cell Line, Tumor ,Genetics ,medicine ,Humans ,Nuclear Receptor Co-Repressor 1 ,Breast ,Enzyme Inhibitors ,Promoter Regions, Genetic ,Molecular Biology ,Cyclin-Dependent Kinase Inhibitor Proteins ,Nuclear Proteins ,HDAC7 ,Acetylation ,Epithelial Cells ,Molecular biology ,HDAC4 ,Chromatin ,Gene Expression Regulation, Neoplastic ,Histone Deacetylase Inhibitors ,Repressor Proteins ,Trichostatin A ,biology.protein ,Receptors, Calcitriol ,RNA Interference ,Histone deacetylase ,Transcription Initiation Site ,Chromatin immunoprecipitation ,Cyclin-dependent kinase inhibitor protein ,medicine.drug - Abstract
The anti-proliferative effects of histone deacetylase (HDAC) inhibitors and 1alpha,25-dihydroxyvitamin D3 [1alpha,25(OH)2D3] converge via the interaction of un-liganded vitamin D receptor (VDR) with co-repressors recruiting multiprotein complexes containing HDACs and via the induction of cyclin-dependent kinase inhibitor (CDKI) genes of the INK4 and Cip/Kip family. We investigated the effects of the HDAC inhibitor Trichostatin A (TSA) and 1alpha,25(OH)2D3 on the proliferation and CDKI gene expression in malignant and non-malignant mammary epithelial cell lines. TSA induced the INK4-family genes p18 and p19, whereas the Cip/Kip family gene p21 was stimulated by 1alpha,25(OH)2D3. Chromatin immunoprecipitation and RNA inhibition assays showed that the co-repressor NCoR1 and some HDAC family members complexed un-liganded VDR and repressed the basal level of CDKI genes, but their role in regulating CDKI gene expression by TSA and 1alpha,25(OH)2D3 were contrary. HDAC3 and HDAC7 attenuated 1alpha,25(OH)2D3-dependent induction of the p21 gene, for which NCoR1 is essential. In contrast, TSA-mediated induction of the p18 gene was dependent on HDAC3 and HDAC4, but was opposed by NCoR1 and un-liganded VDR. This suggests that the attenuation of the response to TSA by NCoR1 or that to 1alpha,25(OH)2D3 by HDACs can be overcome by their combined application achieving maximal induction of anti-proliferative target genes.
- Published
- 2007
22. Global SUMOylation on active chromatin is an acute heat stress response restricting transcription
- Author
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Minna U. Kaikkonen, Marjo Malinen, Lea Sistonen, Jenny Joutsen, Einari A. Niskanen, Päivi Sutinen, Anniina Vihervaara, Sari Toropainen, Jorma J. Palvimo, Ville Paakinaho, and Terveystieteiden tiedekunta
- Subjects
Histone-modifying enzymes ,Transcription, Genetic ,SUMO protein ,RNA polymerase II ,Biology ,Chromatin remodeling ,Heat Shock Transcription Factors ,Humans ,Enhancer ,Promoter Regions, Genetic ,Transcription factor ,Chromatin binding ,Research ,Sumoylation ,Molecular biology ,Protein Inhibitors of Activated STAT ,Chromatin ,Cell biology ,DNA-Binding Proteins ,Gene Expression Regulation ,biology.protein ,Small Ubiquitin-Related Modifier Proteins ,RNA Polymerase II ,K562 Cells ,Heat-Shock Response ,Transcription Factors - Abstract
Article, Background Cells have developed many ways to cope with external stress. One distinctive feature in acute proteotoxic stresses, such as heat shock (HS), is rapid post-translational modification of proteins by SUMOs (small ubiquitin-like modifier proteins; SUMOylation). While many of the SUMO targets are chromatin proteins, there is scarce information on chromatin binding of SUMOylated proteins in HS and the role of chromatin SUMOylation in the regulation of transcription. Results We mapped HS-induced genome-wide changes in chromatin occupancy of SUMO-2/3-modified proteins in K562 and VCaP cells using ChIP-seq. Chromatin SUMOylation was further correlated with HS-induced global changes in transcription using GRO-seq and RNA polymerase II (Pol2) ChIP-seq along with ENCODE data for K562 cells. HS induced a rapid and massive rearrangement of chromatin SUMOylation pattern: SUMOylation was gained at active promoters and enhancers associated with multiple transcription factors, including heat shock factor 1. Concomitant loss of SUMOylation occurred at inactive intergenic chromatin regions that were associated with CTCF-cohesin complex and SETDB1 methyltransferase complex. In addition, HS triggered a dynamic chromatin binding of SUMO ligase PIAS1, especially onto promoters. The HS-induced SUMOylation on chromatin was most notable at promoters of transcribed genes where it positively correlated with active transcription and Pol2 promoter-proximal pausing. Furthermore, silencing of SUMOylation machinery either by depletion of UBC9 or PIAS1 enhanced expression of HS-induced genes. Conclusions HS-triggered SUMOylation targets promoters and enhancers of actively transcribed genes where it restricts the transcriptional activity of the HS-induced genes. PIAS1-mediated promoter SUMOylation is likely to regulate Pol2-associated factors in HS., published version
- Published
- 2015
23. Regulation of multiple insulin-like growth factor binding protein genes by 1 ,25-dihydroxyvitamin D3
- Author
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Merja Matilainen, Marjo Malinen, Katri Saavalainen, and Carsten Carlberg
- Subjects
Male ,Bone Neoplasms ,RNA polymerase II ,Biology ,Retinoid X receptor ,Vitamin D Response Element ,Calcitriol receptor ,Article ,Calcitriol ,Cell Line, Tumor ,Genetics ,Humans ,Gene ,Regulation of gene expression ,Reporter gene ,Prostatic Neoplasms ,Molecular biology ,Chromatin ,Insulin-Like Growth Factor Binding Protein 1 ,Insulin-Like Growth Factor Binding Proteins ,Insulin-Like Growth Factor Binding Protein 2 ,Insulin-Like Growth Factor Binding Protein 3 ,Gene Expression Regulation ,biology.protein ,Insulin-Like Growth Factor Binding Protein 5 - Abstract
Recently, insulin-like growth factor binding proteins (IGFBPs) have been found to be primary mediators of the anti-proliferative actions of the nuclear hormone 1alpha,25-dihydroxyvitamin D3 [1alpha,25(OH)2D3], but dependent on cellular context IGFBPs can also have a mitogenic effect. In this study, we performed expression profiling of all six human IGFBP genes in prostate and bone cancer cells and demonstrated that IGFBP1, 3 and 5 are primary 1alpha,25(OH)2D3 target genes. In silico screening of the 174 kb of genomic sequence surrounding all six IGFBP genes identified 15 candidate vitamin D response elements (VDREs) close to or in IGFBP1, 2, 3 and 5 but not in the IGFBP4 and 6 genes. The putative VDREs were evaluated in vitro by gelshift assays and in living cells by reporter gene and chromatin immuno-precipitation (ChIP) assays. Of these 10 VDREs appear to be functional. ChIP assays demonstrated for each of these an individual, stimulation time-dependent association profile not only with the vitamin D receptor, but also with first heterodimeric partner the retinoid X receptor, other regulatory complex components and phosphorylated RNA polymerase II. Some of the VDREs are located distantly from the transcription start sites of IGFBP1, 3 and 5, but all 10 VDREs seem to contribute to the regulation of the genes by 1alpha,25(OH)2D3. In conclusion, IGFBP1, 3 and 5 are primary 1alpha,25(OH)2D3 target genes that in intact cells are each under the control of multiple VDREs.
- Published
- 2005
24. Hypoxia-inducible factor 1-induced G protein-coupled receptor 35 expression is an early marker of progressive cardiac remodelling
- Author
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Jenni Huusko, Marjo Malinen, Tomi Tuomainen, Jorma J. Palvimo, Pasi Tavi, Seppo Ylä-Herttuala, Olli Vuolteenaho, Veli-Pekka Ronkainen, and Svetlana Laidinen
- Subjects
Male ,medicine.medical_specialty ,Aryl hydrocarbon receptor nuclear translocator ,Physiology ,Biology ,Ligands ,Receptors, G-Protein-Coupled ,Mice ,Physiology (medical) ,Internal medicine ,Gene expression ,medicine ,Myocyte ,Animals ,Myocytes, Cardiac ,Receptor ,Promoter Regions, Genetic ,Cells, Cultured ,Pressure overload ,Regulation of gene expression ,Ventricular Remodeling ,Actin cytoskeleton ,Hypoxia-Inducible Factor 1, alpha Subunit ,Cell biology ,Mice, Inbred C57BL ,Oxygen ,Endocrinology ,Animals, Newborn ,Gene Expression Regulation ,Cardiology and Cardiovascular Medicine ,GPR35 - Abstract
Aims G protein-coupled receptor 35 (GPR35) has been characterized to be one of the genes that are up-regulated in human heart failure. Since mechanisms controlling GPR35 expression are not known, we investigated the regulation of GPR35 gene and protein expression in cardiac myocytes and in the mouse models of cardiac failure. Methods and results In cardiac myocytes, GPR35 gene expression was found to be exceptionally sensitive to hypoxia and induced by hypoxia-inducible factor-1 (HIF-1) activation. HIF-1-dependent regulation was established by genetic (HIF-1/VP16, Inhibitory Per/Arnt/Sim domain protein) and chemical [desferrioxamine (DFO)] modulation of the HIF-1 pathway and further confirmed by mutation analysis of the GPR35 promoter and by demonstrating direct binding of endogenous HIF-1 to the gene promoter. Hypoxia increased the number and density of GPR35 receptors on the cardiomyocyte cell membranes. Chemical GPR35 agonist Zaprinast caused GPR35 activation and receptor internalization in cardiac myocytes. In addition, overexpressed GPR35 disrupted actin cytoskeleton arrangement and caused morphological changes in cultured cardiomyocytes. GPR35 gene and protein expressions were also induced in mouse models of cardiac failure; the acute phase of myocardial infarction and during the compensatory and decompensatory phase of pressure-load induced cardiac hypertrophy. Conclusions Cardiac expression of GPR35 is regulated by hypoxia through activation of HIF-1. The expression of GPR35 in mouse models of cardiac infarction and pressure load suggests that GPR35 could be used as an early marker of progressive cardiac failure.
- Published
- 2013
25. Histone demethylase GASC1 - a potential prognostic and predictive marker in invasive breast cancer
- Author
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Kaisa Nieminen, Arto Mannermaa, Jorma J. Palvimo, Ylermi Soini, Marjo Malinen, Bozena Berdel, Maria Tengström, and Veli-Matti Kosma
- Subjects
CA15-3 ,Oncology ,Jumonji Domain-Containing Histone Demethylases ,Cancer Research ,medicine.medical_specialty ,Survival ,medicine.medical_treatment ,Antineoplastic Agents ,Breast Neoplasms ,Kaplan-Meier Estimate ,lcsh:RC254-282 ,Disease-Free Survival ,Breast cancer ,Estrogen Receptor Modulators ,Surgical oncology ,Internal medicine ,Biomarkers, Tumor ,Genetics ,medicine ,Carcinoma ,Humans ,RNA, Messenger ,Tissue microarrays ,Proportional Hazards Models ,Tissue microarray ,Predictive marker ,Radiotherapy ,business.industry ,Carcinoma, Ductal, Breast ,Cancer ,Middle Aged ,GASC1 ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Prognosis ,medicine.disease ,Immunohistochemistry ,Radiation therapy ,Tissue Array Analysis ,Female ,Epigenetics ,business ,Research Article - Abstract
Background The histone demethylase GASC1 (JMJD2C) is an epigenetic factor suspected of involvement in development of different cancers, including breast cancer. It is thought to be overexpressed in the more aggressive breast cancer types based on mRNA expression studies on cell lines and meta analysis of human breast cancer sets. This study aimed to evaluate the prognostic and predictive value of GASC1 for women with invasive breast cancer. Methods All the 355 cases were selected from a cohort enrolled in the Kuopio Breast Cancer Project between April 1990 and December 1995. The expression of GASC1 was studied by immunohistochemistry (IHC) on tissue microarrays. Additionally relative GASC1 mRNA expression was measured from available 57 cases. Results In our material, 56% of the cases were GASC1 negative and 44% positive in IHC staining. Women with GASC1 negative tumors had two years shorter breast cancer specific survival and time to relapse than the women with GASC1 positive tumors (p=0.017 and p=0.034 respectively). The majority of GASC1 negative tumors were ductal cases (72%) of higher histological grade (84% of grade II and III altogether). When we evaluated estrogen receptor negative and progesterone receptor negative cases separately, there was 2 times more GASC1 negative than GASC1 positive tumors in each group (chi2, p= 0.033 and 0.001 respectively). In the HER2 positive cases, there was 3 times more GASC1 negative cases than GASC1 positives (chi2, p= 0.029). Patients treated with radiotherapy (n=206) and hormonal treatment (n=62) had better breast cancer specific survival, when they were GASC1 positive (Cox regression: HR=0.49, p=0.007 and HR=0.33, p=0.015, respectively). The expression of GASC1 mRNA was in agreement with the protein analysis. Conclusions This study indicates that the GASC1 is both a prognostic and a predictive factor for women with invasive breast cancer. GASC1 negativity is associated with tumors of more aggressive histopathological types (ductal type, grade II and III, ER negative, PR negative). Patients with GASC1 positive tumors have better breast cancer specific survival and respond better to radiotherapy and hormonal treatment.
- Published
- 2012
26. Regulation of the human cyclin C gene via multiple vitamin D3-responsive regions in its promoter
- Author
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Marjo Malinen, Katri Saavalainen, Sami Väisänen, Lasse Sinkkonen, and Carsten Carlberg
- Subjects
analysis ,Cyclin D ,Biology ,Retinoid X receptor ,Biochemistry, biophysics & molecular biology [F05] [Life sciences] ,Response Elements ,Calcitriol receptor ,Article ,Histones ,Cytochrome P-450 Enzyme System ,Calcitriol ,Cyclin C ,Cyclins ,Cell Line, Tumor ,Coactivator ,Genetics ,Humans ,genetics ,Promoter Regions, Genetic ,Vitamin D3 24-Hydroxylase ,Biochimie, biophysique & biologie moléculaire [F05] [Sciences du vivant] ,Regulation of gene expression ,Reporter gene ,Acetylation ,Molecular biology ,VDRE ,Retinoid X Receptors ,Gene Expression Regulation ,Steroid Hydroxylases ,biology.protein ,Receptors, Calcitriol ,Promoter Regions (Genetics) ,biosynthesis ,pharmacology ,Chromatin immunoprecipitation ,metabolism - Abstract
The candidate human tumor suppressor gene cyclin C is a primary target of the anti-proliferative hormone 1alpha,25-dihydroxyvitamin D3 [1alpha,25(OH)2D3], but binding sites for the 1alpha,25(OH)2D3 receptor (VDR), so-called 1alpha,25(OH)2D3 response elements (VDREs), have not yet been identified in the promoter of this gene. We screened various cancer cell lines by quantitative PCR and found that the 1alpha,25(OH)2D3 inducibility of cyclin C mRNA expression, in relationship with the 24-hydroxylase (CYP24) gene, was best in MCF-7 human breast cancer cells. To characterize the molecular mechanisms, we analyzed 8.4 kb of the cyclin C promoter by using chromatin immunoprecipitation assays (ChIP) with antibodies against acetylated histone 4, VDR and its partner receptor, retinoid X receptor (RXR). The histone 4 acetylation status of all 23 investigated regions of the cyclin C promoter did not change significantly in response to 1alpha,25(OH)2D3, but four independent promoter regions showed a consistent, 1alpha,25(OH)2D3-dependent association with VDR and RXR over a time period of 240 min. Combined in silico/in vitro screening identified in each of these promoter regions a VDRE and reporter gene assays confirmed their functionality. Moreover, re-ChIP assays monitored simultaneous association of VDR with RXR, coactivator, mediator and RNA polymerase II proteins on these regions. Since cyclin C protein is associated with those mediator complexes that display transcriptional repressive properties, this study contributes to the understanding of the downregulation of a number of secondary 1alpha,25(OH)2D3-responding genes.
- Published
- 2005
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