141 results on '"Liyang Liu"'
Search Results
2. The polysaccharide from Aralia continentalis Kitagawa enhances immune responses via activating the MAPKs and NF-κB signaling pathways in RAW 264.7 macrophages
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Xi Wang, Liyang Liu, Xu Zhang, Di Xie, Hewen Hu, Siqi Wang, Dawei Wang, and Tianyu Wang
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Aralia continentalis Kitagawa ,Polysaccharide ,Macrophage ,Immunomodulatory activity ,Molecular mechanisms ,MAPKs ,Agriculture - Abstract
Abstract Background Polysaccharides derived from Aralia continentalis Kitagawa possess excellent biological properties, such as anti-tumor, antioxidant, antibacterial, lipid-lowering, and anti-inflammatory. However, the immunomodulatory effects of these polysaccharides on macrophages and their underlying mechanisms remain largely unexplored due to their complex molecular structure. Results The study isolated and characterized a pure polysaccharide, namely WACP(S)-A3-b from Aralia continentalis Kitagawa to investigate its impact on RAW 264.7 cell activation. The structural analysis of WACP(S)-A3-b revealed an average molecular weight of 40.1 kDa with a pectin-like structure composed of HG and RG-I domains, primarily composed of galacturonic acid, rhamnose, galactose, fucose, and arabinose at molar ratios of 55.56: 19.60: 10.29: 7.85: 6.69; NMR found that WACP(S)-A3-b contains α-1,4-GalpA, α-1,2-Rhap, α-1,2,4-Rhap, and t-α-GalpA. Further results demonstrated that the immunomodulatory activity of WACP(S)-A3-b could enhance the production of nitric oxide (NO), interleukin-6 (IL-6), and tumor necrosis factor-alpha (TNF-α), and promote the expression of interleukin-1beta (IL-1β). Additionally, WACP(S)-A3-b could activate MAPKs and NF-κB signaling pathways, thereby enhancing the ability of RAW 264.7 macrophages to release cytokines. Conclusions The study isolated and purified the Aralia continentalis Kitagawa stem polysaccharide, clarified the basic structure of the polysaccharide, and explored the mechanism of immune activity, which provided a theoretical basis for the structure–activity relationship of the polysaccharide. Graphical abstract
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- 2024
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3. Dose–response relationship between computerized cognitive training and cognitive improvement
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Liyang Liu, Haibo Wang, Yi Xing, Ziheng Zhang, Qingge Zhang, Ming Dong, Zhujiang Ma, Longjun Cai, Xiaoyi Wang, and Yi Tang
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Computer applications to medicine. Medical informatics ,R858-859.7 - Abstract
Abstract Although computerized cognitive training (CCT) is an effective digital intervention for cognitive impairment, its dose-response relationship is understudied. This retrospective cohort study explores the association between training dose and cognitive improvement to find the optimal CCT dose. From 2017 to 2022, 8,709 participants with subjective cognitive decline, mild cognitive impairment, and mild dementia were analyzed. CCT exposure varied in daily dose and frequency, with cognitive improvement measured weekly using Cognitive Index. A mixed-effects model revealed significant Cognitive Index increases across most dose groups before reaching the optimal dose. For participants under 60 years, the optimal dose was 25 to
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- 2024
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4. Research on the historical spatial characteristics and conservation strategies of colonial cities in Asia and Africa: a case study of 21 typical cities
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Wei Wei, Liyang Liu, Zhaosong Niu, and Sufang Qiao
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Colonial city ,Morphology ,Spatial pattern ,Conzenian approach ,Heritage conservation ,Fine Arts ,Analytical chemistry ,QD71-142 - Abstract
Abstract Colonial cities in Asia and Africa, developed under the dual influence of native and sovereign cultures during the colonial era, exhibit unique urban morphological characteristics and reflect the planning ideologies of diverse cultures. Thus, the morphological study of colonial cities in Asia and Africa is crucial for understanding and identifying the historical and cultural value of these cities, which in turn enables the formulation of precise conservation strategies. In light of this, the study develops an urban morphological analysis methodology comprising "Colonial Background Analysis—Morphological Characteristics Analysis—Driving Factor Extraction" based on the Conzenian Approach, which is used to examine the morphology of 21 typical colonial cities in Asia and Africa across various colonial periods. As a result, "Dual-City" emerges as the core spatial characteristic of colonial cities in Asia and Africa, reflecting the morphological differences in road layouts, urban fabric, and urban cores between native and European zones. Additionally, as native settlement sizes, social structures, and cultural identities differ between cities, three major spatial patterns of the "Dual-City" model can be identified: separated, mediated, and integrated spatial patterns, resulting from the varied planning approaches applied by colonizers. Furthermore, suggestions for the conservation of colonial heritage are proposed based on the driving factors analysis from the morphological study.
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- 2024
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5. Global critical soil moisture thresholds of plant water stress
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Zheng Fu, Philippe Ciais, Jean-Pierre Wigneron, Pierre Gentine, Andrew F. Feldman, David Makowski, Nicolas Viovy, Armen R. Kemanian, Daniel S. Goll, Paul C. Stoy, Iain Colin Prentice, Dan Yakir, Liyang Liu, Hongliang Ma, Xiaojun Li, Yuanyuan Huang, Kailiang Yu, Peng Zhu, Xing Li, Zaichun Zhu, Jinghui Lian, and William K. Smith
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Science - Abstract
Abstract During extensive periods without rain, known as dry-downs, decreasing soil moisture (SM) induces plant water stress at the point when it limits evapotranspiration, defining a critical SM threshold (θcrit). Better quantification of θcrit is needed for improving future projections of climate and water resources, food production, and ecosystem vulnerability. Here, we combine systematic satellite observations of the diurnal amplitude of land surface temperature (dLST) and SM during dry-downs, corroborated by in-situ data from flux towers, to generate the observation-based global map of θcrit. We find an average global θcrit of 0.19 m3/m3, varying from 0.12 m3/m3 in arid ecosystems to 0.26 m3/m3 in humid ecosystems. θcrit simulated by Earth System Models is overestimated in dry areas and underestimated in wet areas. The global observed pattern of θcrit reflects plant adaptation to soil available water and atmospheric demand. Using explainable machine learning, we show that aridity index, leaf area and soil texture are the most influential drivers. Moreover, we show that the annual fraction of days with water stress, when SM stays below θcrit, has increased in the past four decades. Our results have important implications for understanding the inception of water stress in models and identifying SM tipping points.
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- 2024
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6. Loss‐of‐function variants in RNA binding motif protein X‐linked induce neuronal defects contributing to amyotrophic lateral sclerosis pathogenesis
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Di He, Xinyi He, Dongchao Shen, Liyang Liu, Xunzhe Yang, Meng Hao, Yi Wang, Yi Li, Qing Liu, Mingsheng Liu, Jiucun Wang, Xue Zhang, and Liying Cui
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ALS ,m6A modification ,RBMX ,single‐cell sequencing ,whole‐exome sequencing ,Medicine - Abstract
Abstract Despite being one of the most prevalent RNA modifications, the role of N6‐methyladenosine (m6A) in amyotrophic lateral sclerosis (ALS) remains ambiguous. In this investigation, we explore the contribution of genetic defects of m6A‐related genes to ALS pathogenesis. We scrutinized the mutation landscape of m6A genes through a comprehensive analysis of whole‐exome sequencing cohorts, encompassing 508 ALS patients and 1660 population‐matched controls. Our findings reveal a noteworthy enrichment of RNA binding motif protein X‐linked (RBMX) variants among ALS patients, with a significant correlation between pathogenic m6A variants and adverse clinical outcomes. Furthermore, Rbmx knockdown in NSC‐34 cells overexpressing mutant TDP43Q331K results in cell death mediated by an augmented p53 response. Similarly, RBMX knockdown in ALS motor neurons derived from induced pluripotent stem cells (iPSCs) manifests morphological defects and activation of the p53 pathway. Transcriptional analysis using publicly available single‐cell sequencing data from the primary motor cortex indicates that RBMX‐regulated genes selectively influence excitatory neurons and exhibit enrichment in ALS‐implicated pathways. Through integrated analyses, our study underscores the emerging roles played by RBMX in ALS, suggesting a potential nexus between the disease and dysregulated m6A‐mediated mRNA metabolism.
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- 2024
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7. Optimal scheduling study of green warehousing microgrid based on improved sparrow search algorithm
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Liyang Liu, Shiyu Zhang, Hongdi Zhang, Ziyan Zhang, and Yudong Liu
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green warehousing ,wind-solar-storage ,improved sparrow search algorithm ,optimal scheduling ,economic optimization ,General Works - Abstract
Combining green warehousing with wind-solar-storage systems can enhance economic power consumption, energy saving, and emission reduction in green warehousing. To achieve efficient and stable operation of the wind-solar-storage microgrid, this paper proposes an optimal microgrid scheduling strategy based on the Improved Sparrow Algorithm (ISSA). Firstly, a comprehensive benefit model is established based on the economic and environmental benefits of microgrid daily operation. Then, an innovative improved sparrow search algorithm is proposed, which aims to improve the global search and local search capability of the microgrid scheduling problem by introducing improvements such as Logistic-Circle chaotic mapping, Bottle Sea Sheath swarm optimization algorithm, dynamic inertia weights, water wave dynamic factor, and Cauchy-Gaussian variational strategy. Finally, the microgrid optimal scheduling model is solved by the improved sparrow search algorithm and compared with other algorithms. In this paper, Matlab 2016b is used for simulation, and the simulation results show that the ISSA algorithm outperforms other algorithms in terms of solution stability and optimization search capability. Under three modes of operation, ISSA improves the microgrid operation revenue by 6.29%, 5.98%, and 6.31% at least. Therefore, the optimal scheduling scheme obtained based on ISSA improves the daily operating total revenue and the system operation stability of the microgrid.
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- 2024
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8. Prospective nutrition-inflammation markers for predicting early stoma-related complications in patients with colorectal cancer undergoing enterostomy
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Jie Yuan, Fan Jiang, Xiaochao Fu, Yun Hou, Yali Hu, Qishun Yang, Liyang Liu, Yufu Wang, Wangwang Sheng, Fuao Cao, Jinghu He, Guanglei Chen, Cheng Peng, and Wei Jiang
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stoma complication ,colorectal cancer ,neutrophil-to-albumin ratio ,glucose-to-lymphocyte ratio ,predicting marker ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
BackgroundEnterostomy is important for radical resection of colorectal cancer (CRC). Nevertheless, the notable occurrence of complications linked to enterostomy results in a reduction in patients’ quality of life and impedes adjuvant therapy. This study sought to forecast early stoma-related complications (ESRCs) by leveraging easily accessible nutrition-inflammation markers in CRC patients.MethodsThis study involved 470 individuals with colorectal cancer who underwent intestinal ostomy at Changhai Hospital Affiliated with Naval Medical University as the internal cohort. Between January 2016 and December 2018, the patients were enrolled and randomly allocated into a primary training group and a secondary validation group, with a ratio of 2:1 being upheld. The research encompassed collecting data on each patient’s clinical and pathological status, along with preoperative laboratory results. Independent risk factors were identified through Lasso regression and multivariate analysis, leading to the development of clinical models represented by a nomogram. The model’s utility was assessed using decision curve analysis, calibration curve, and ROC curve. The final model was validated using an external validation set of 179 individuals from January 2015 to December 2021.ResultsAmong the internal cohort, stoma complications were observed in 93 cases. Multivariate regression analysis confirmed that age, stoma site, and elevated markers (Mon, NAR, and GLR) in conjunction with diminished markers (GLB and LMR) independently contributed to an increased risk of ESRCs. The clinical model was established based on these seven factors. The training, internal, and external validation groups exhibited ROC curve areas of 0.839, 0.812, and 0.793, respectively. The calibration curve showed good concordance among the forecasted model with real incidence of ostomy complications. The model displayed outstanding predictive capability and is deemed applicable in clinical settings, as evidenced by Decision Curve Analysis.ConclusionThis study identified nutrition-inflammation markers (GLB, NAR, and GLR) in combination with demographic data as crucial predictors for forecasting ESRCs in colorectal cancer patients. A novel prognostic model was formulated and validated utilizing these markers.
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- 2024
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9. Solar Radiation Triggers the Bimodal Leaf Phenology of Central African Evergreen Broadleaved Forests
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Liyang Liu, Philippe Ciais, Fabienne Maignan, Yuan Zhang, Nicolas Viovy, Marc Peaucelle, Elizabeth Kearsley, Koen Hufkens, Marijn Bauters, Colin A. Chapman, Zheng Fu, Shangrong Lin, Haibo Lu, Jiashun Ren, Xueqin Yang, Xianjin He, and Xiuzhi Chen
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phenology ,tropical African rainforests ,land surface model (LSM) ,ORCHIDEE ,GPP ,Physical geography ,GB3-5030 ,Oceanography ,GC1-1581 - Abstract
Abstract Central African evergreen broadleaved forests around the equator exhibit a double annual cycle for canopy phenology and carbon uptake seasonality. The underlying drivers of this behavior are poorly understood and the double seasonality is not captured by land surface models (LSM). In this study, we developed a new leaf phenology module into the ORCHIDEE LSM (hereafter ORCHIDEE‐AFP), which utilizes short‐wave incoming radiation (SWd) as the main driver of leaf shedding and partial rejuvenation of the canopy, to simulate the double seasonality of central African forests. The ORCHIDEE‐AFP model has been evaluated by using field data from two forest sites and satellite observations of the enhanced vegetation index (EVI), which is a proxy of young leaf area index (LAIYoung) with leafage less than 6 months, as well as six products of GPP or GPP proxies. Results demonstrate that ORCHIDEE‐AFP successfully reproduces observed leaf turnover (R = 0.45) and young leaf abundance (R = 0.74), and greatly improve the representation of the bimodal leaf phenology. The proportion of grid cells with a significant positive correlation between the seasonality of modeled LAIYoung and observed EVI increased from 0.2% in the standard model to 27% in the new model. For photosynthesis, the proportions of grid cells with significant positive correlations between modeled and observed seasonality range from 26% to 65% across the six GPP evaluation products. The improved performance of the ORCHIDEE‐AFP model in simulating leaf phenology and photosynthesis of central African forests will allow a more accurate assessment of the impacts of climate change in tropical forests.
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- 2024
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10. Association between health insurance cost-sharing and choice of hospital tier for cardiovascular diseases in China: a prospective cohort studyResearch in context
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Muriel Levy, John Buckell, Robert Clarke, Nina Wu, Pei Pei, Dianjianyi Sun, Daniel Avery, Hua Zhang, Jun Lv, Canqing Yu, Liming Li, Zhengming Chen, Winnie Yip, Yiping Chen, Borislava Mihaylova, Junshi Chen, Rory Collins, Chen Wang, Richard Peto, Robin Walters, Maxim Barnard, Derrick Bennett, Ruth Boxall, Kahung Chan, Johnathan Clarke, Huaidong Du, Ahmed Edris Mohamed, Hannah Fry, Simon Gilbert, Pek Kei Im, Andri Iona, Maria Kakkoura, Christiana Kartsonaki, Hubert Lam, Kuang Lin, James Liu, Mohsen Mazidi, Iona Millwood, Sam Morris, Qunhua Nie, Alfred Pozaricki, Paul Ryder, Saredo Said, Dan Schmidt, Becky Stevens, Iain Turnbull, Baihan Wang, Lin Wang, Neil Wright, Ling Yang, Xiaoming Yang, Pang Yao, Xiao Han, Can Hou, Qingmei Xia, Chao Liu, Naying Chen, Duo Liu, Zhenzhu Tang, Ningyu Chen, Qilian Jiang, Jian Lan, Mingqiang Li, Yun Liu, Fanwen Meng, Jinhuai Meng, Rong Pan, Yulu Qin, Ping Wang, Sisi Wang, Liuping Wei, Liyuan Zhou, Caixia Dong, Pengfei Ge, Xiaolan Ren, Zhongxiao Li, Enke Mao, Tao Wang, Hui Zhang, Xi Zhang, Jinyan Chen, Ximin Hu, Xiaohuan Wang, Zhendong Guo, Huimei Li, Yilei Li, Min Weng, Shukuan Wu, Shichun Yan, Mingyuan Zou, Xue Zhou, Ziyan Guo, Quan Kang, Yanjie Li, Bo Yu, Qinai Xu, Liang Chang, Lei Fan, Shixian Feng, Ding Zhang, Gang Zhou, Yulian Gao, Tianyou He, Pan He, Chen Hu, Huarong Sun, Xukui Zhang, Biyun Chen, Zhongxi Fu, Yuelong Huang, Huilin Liu, Qiaohua Xu, Li Yin, Huajun Long, Xin Xu, Hao Zhang, Libo Zhang, Jian Su, Ran Tao, Ming Wu, Jie Yang, Jinyi Zhou, Yonglin Zhou, Yihe Hu, Yujie Hua, Jianrong Jin, Fang Liu, Jingchao Liu, Yan Lu, Liangcai Ma, Aiyu Tang, Jun Zhang, Liang Cheng, Ranran Du, Ruqin Gao, Feifei Li, Shanpeng Li, Yongmei Liu, Feng Ning, Zengchang Pang, Xiaohui Sun, Xiaocao Tian, Shaojie Wang, Yaoming Zhai, Wei Hou, Silu Lv, Junzheng Wang, Xiaofang Chen, Xianping Wu, Ningmei Zhang, Xiaoyu Chang, Jianguo Li, Jiaqiu Liu, Guojin Luo, Qiang Sun, Xunfu Zhong, Weiwei Gong, Ruying Hu, Hao Wang, Meng Wang, Min Yu, Lingli Chen, Qijun Gu, Dongxia Pan, Chunmei Wang, Kaixu Xie, Xiaoyi Zhang, Hongyuan Chen, Liyang Liu, Haiyan Gou, Xun Wang, Jing Ding, Ning Zhang, Yueshi Mao, Shanshan Zhou, Lirong Jin, Xin Cheng, Yun Lu, Li Chen, Zilong Hao, Xiaona Xing, Lei Wang, Naixin Ju, Yiting Mao, Shuya Li, Peng Du, Deren Wang, Xiaojia Sun, Shihao You, Weizhi Wang, Yanmei Zhu, Xiaojiu Li, and Yi Dong
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Hospital type ,Cardiovascular diseases ,Healthcare seeking behaviour ,China ,Public aspects of medicine ,RA1-1270 - Abstract
Summary: Background: Hospitals in China are classified into tiers (1, 2 or 3), with the largest (tier 3) having more equipment and specialist staff. Differential health insurance cost-sharing by hospital tier (lower deductibles and higher reimbursement rates in lower tiers) was introduced to reduce overcrowding in higher tier hospitals, promote use of lower tier hospitals, and limit escalating healthcare costs. However, little is known about the effects of differential cost-sharing in health insurance schemes on choice of hospital tiers. Methods: In a 9-year follow-up of a prospective study of 0.5 M adults from 10 areas in China, we examined the associations between differential health insurance cost-sharing and choice of hospital tiers for patients with a first hospitalisation for stroke or ischaemic heart disease (IHD) in 2009–2017. Analyses were performed separately in urban areas (stroke: n = 20,302; IHD: n = 19,283) and rural areas (stroke: n = 21,130; IHD: n = 17,890), using conditional logit models and adjusting for individual socioeconomic and health characteristics. Findings: About 64–68% of stroke and IHD cases in urban areas and 27–29% in rural areas chose tier 3 hospitals. In urban areas, higher reimbursement rates in each tier and lower tier 3 deductibles were associated with a greater likelihood of choosing their respective hospital tiers. In rural areas, the effects of cost-sharing were modest, suggesting a greater contribution of other factors. Higher socioeconomic status and greater disease severity were associated with a greater likelihood of seeking care in higher tier hospitals in urban and rural areas. Interpretation: Patient choice of hospital tiers for treatment of stroke and IHD in China was influenced by differential cost-sharing in urban areas, but not in rural areas. Further strategies are required to incentivise appropriate health seeking behaviour and promote more efficient hospital use. Funding: Wellcome Trust, Medical Research Council, British Heart Foundation, Cancer Research UK, Kadoorie Charitable Foundation, China Ministry of Science and Technology, and National Natural Science Foundation of China.
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- 2024
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11. Deep flanking sequence engineering for efficient promoter design using DeepSEED
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Pengcheng Zhang, Haochen Wang, Hanwen Xu, Lei Wei, Liyang Liu, Zhirui Hu, and Xiaowo Wang
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Science - Abstract
Abstract Designing promoters with desirable properties is essential in synthetic biology. Human experts are skilled at identifying strong explicit patterns in small samples, while deep learning models excel at detecting implicit weak patterns in large datasets. Biologists have described the sequence patterns of promoters via transcription factor binding sites (TFBSs). However, the flanking sequences of cis-regulatory elements, have long been overlooked and often arbitrarily decided in promoter design. To address this limitation, we introduce DeepSEED, an AI-aided framework that efficiently designs synthetic promoters by combining expert knowledge with deep learning techniques. DeepSEED has demonstrated success in improving the properties of Escherichia coli constitutive, IPTG-inducible, and mammalian cell doxycycline (Dox)-inducible promoters. Furthermore, our results show that DeepSEED captures the implicit features in flanking sequences, such as k-mer frequencies and DNA shape features, which are crucial for determining promoter properties.
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- 2023
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12. Seasonal and long-term dynamics in forest microclimate effects: global pattern and mechanism
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Chaoqun Zhang, Yongxian Su, Liyang Liu, Jianping Wu, Guangqing Huang, Xueyan Li, Chongyuan Bi, Wenting Yan, and Raffaele Lafortezza
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Environmental sciences ,GE1-350 ,Meteorology. Climatology ,QC851-999 - Abstract
Abstract Although the biophysical effects of afforestation or deforestation on local climate are recognized, the biophysical consequences of seasonal and long-term dynamics in forests on understory microclimate, which creates microrefugia for forest organisms under global warming, remain less well understood. To fill this research gap, we combined a three-layered (i.e., canopy, forest air space and understory soil) land surface energy balance model and Intrinsic Biophysical Mechanism Model and quantify seasonal (warm minus cool seasons) and long-term changes (later minus former periods) in the biophysical effects of forest dynamics on understory air temperature (ΔT a) and soil surface temperature (ΔT s). We found that high latitudes forests show strongest negative seasonal variations in both ΔT a and ΔT s, followed by moderate latitudes forests. In contrast, low latitudes forests exhibit positive seasonal variations in ΔT a and weak negative seasonal variations in ΔT s. For the long-term variations, ΔT s increases systematically at all three latitudes. However, the situation differs greatly for ΔT s, with a weak increase at low and moderate latitudes, but a slight decrease at high latitudes. Overall, changes in sensible and latent heat fluxes induced by forest dynamics (such as leaf area index), by altering the aerodynamic resistances of canopy and soil surface layers, are the main factors driving changes in forest microclimate effects. In addition, this study also develops an aerodynamic resistance coefficient $${f}_{{\rm{r}}}^{1}$$ f r 1 to combine the air temperature effects and surface soil temperature effects and proposes an indicator – ΔT Su, that is, $$\Delta {T}_{{\rm{Su}}}=\Delta {T}_{{\rm{s}}}+(\frac{1}{{f}_{{\rm{r}}}^{1}}-1)\Delta {T}_{{\rm{a}}}$$ Δ T Su = Δ T s + ( 1 f r 1 − 1 ) Δ T a , as a possible benchmark for evaluating the total biophysical effects of forests on temperatures.
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- 2023
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13. Positively charged thin-film composite hollow fiber nanofiltration membrane via interfacial polymerization and branch polyethyleneimine modification for Mg2+/Li+ separation
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Enlin Wang, Shaoxiao Liu, Liyang Liu, Lihui Han, and Baowei Su
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Hollow fiber membrane ,Nanofiltration ,Interfacial polymerization ,Positively charged ,Separation of lithium and magnesium ,Chemistry ,QD1-999 - Abstract
It is a vital technical challenge to extract lithium from salt-lake brine which has very high Mg2+ / Li+ mass ratio via green and low-cost methods, as these two cations have quite similar ionic hydration radius. Positively charged nanofiltration membranes can separate Li+ and Mg2+ through Donnan exclusion. In this work, a kind of hollow fiber nanofiltration membrane with positively charged skin layer was successfully fabricated via interfacial polymerization followed by a surface modification with branched polyethyleneimine (BPEI). The resultant membrane has a large number of amine groups, and thus shows positively charged surface with high rejection for divalent cation ions via Donnan exclusion. This gives it very high selectivity for the separation of Li+ ions from salt-lake brine. Under optimized conditions, it achieves a water permeance of up to 126.2 L m-2 h-1 MPa−1 at a transmembrane pressure difference of 4 bar, and a MgCl2 rejection of 94.6% with 2000 mg L-1 aqueous MgCl2 solution as feed. Meanwhile, it achieves a Mg2+ / Li+ selectivity of nearly 24 for MgCl2 and LiCl salt mixture solution with an overall concentration of 2000 mg L-1 and a Mg2+ / Li+ mass ratio of 150 : 1 as feed, which is high as compared with most of the literature, demonstrating its potential in the practical application of Mg2+ and Li+ separation.
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- 2023
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14. Mutation spectrum of chinese amyotrophic lateral sclerosis patients with frontotemporal dementia
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Xunzhe Yang, Xiaohai Sun, Qing Liu, Liyang Liu, Jinyue Li, Zhengyi Cai, Kang Zhang, Shuangwu Liu, Di He, Dongchao Shen, Mingsheng Liu, Liying Cui, and Xue Zhang
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Amyotrophic lateral sclerosis ,Frontotemporal dementia ,Gene ,Variant ,Medicine - Abstract
Abstract Background Studies have reported that a noncoding hexanucleotide repeat in C9ORF72, is the most common genetic cause of amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD) among Caucasian population, nevertheless it is rare in Chinese population. Therefore, we aimed to investigate the mutation spectrum of Chinese ALS patients with FTD (ALS-FTD). Methods ALS patients with and without cognitive impairments were enrolled. Clinical features were collected including age, sex, disease duration, ALSFRS-r, family history and cognitive evaluation. Thirty-six ALS genes were screened by whole exome sequencing (WES) and repeat-primed polymerase chain reaction (PCR) were used for detection of and abnormal repeat expansions of C9ORF72. Results A total of 1208 patients, including 66 familial ALS (FALS) and 1142 sporadic ALS (SALS) patients were included. Twenty-three patients with sporadic ALS and one familial ALS index had concomitant FTD, which accounts for 1.99% (24/1208) of patients with ALS. In sporadic ALS-FTD, one case harboring C9ORF72 expansion variant, two cases harboring ANXA11 variants and one individual carrying CCNF variant were identified. A recurrent UBQLN2 variant was detected in a familial ALS-FTD patient. All of the ALS-FTD patients carrying variants in known causative genes manifested motor symptom onset (two bulbar onset and three limb onset) and developed cognitive impairment thereafter. It is not easy to draw a conclusion of the genotype-phenotype association in ALS-FTD with certain variants, limited by the small number of patients. Conclusion Our findings provide an overview of spectrum of genetic variants in Chinese ALS-FTD patients. Variants of uncertain significance in UBQLN2, ANXA11 and CCNF were identified and further studies are required for causal relations of these variants with ALS-FTD.
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- 2022
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15. Effect of Fertilization on Soil Fertility and Individual Stand Biomass in Strip Cut Moso Bamboo (Phyllostachys edulis) Forests
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Zhen Li, Fengying Guan, Xiao Zhou, Liyang Liu, Dawei Fu, Xuan Zhang, and Minkai Li
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Moso bamboo ,strip cutting ,fertilization ,soil fertility ,biomass ,Plant ecology ,QK900-989 - Abstract
Strip cutting has emerged as a new, efficient, and mechanized bamboo forest management model. To shorten the recovery period in strip cutting management, improve bamboo resource quality, prevent soil degradation, and achieve sustainable management, we selected on-year pure Moso bamboo (Phyllostachys edulis) forests for an 8-meter-wide strip cut. Three fertilization methods were applied in a complete two-factor experiment, including spreading, cave, and bamboo stump fertilization, at three fertilization dosages of 600, 900, and 1200 kg/ha (N:P:K = 3.5:1:2). We investigated the effects of different fertilization treatments on the biomass of new bamboo shoots and soil fertility to provide a reference for identifying the optimal fertilization scheme. The results showed that fertilization treatment increased the individual stand biomass of new Moso bamboo shoots, with a decreasing trend in the proportion of branches and leaves and an increasing proportion of culms in biomass allocation. Fertilization treatment significantly increased the total nitrogen, phosphorus, and potassium and available phosphorus contents in the soil. Overall, fertilization at 900 kg/ha using the spreading method showed the best results in promoting individual plant biomass recovery (5% increase in culm proportion and 4.12 kg increase in biomass per plant) and restoring soil fertility (increase the contents of TN, TP, TK, and AP in the entire soil layer) after strip cutting Moso bamboo forests, which addresses these pertinent issues in the strip cut management model.
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- 2024
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16. Effects of Different Cutting Widths on Physical and Mechanical Properties of Moso Bamboo under Strip Cutting
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Liyang Liu, Xiao Zhou, Zhen Li, Xuan Zhang, and Fengying Guan
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Moso bamboo ,strip logging ,physical properties ,mechanical properties ,Plant ecology ,QK900-989 - Abstract
We aimed to explore the effect of strip cutting width on the physical and mechanical properties of Moso bamboo (Phyllostachys edulis). Four-year-old hairy bamboo with different cutting bandwidths (3 m, 5 m, 8 m, 12 m and 15 m) was used as the experimental material, and the traditional management forest (CK) was used as the control. Eight physical and mechanical properties—radial line shrinkage, chordal line shrinkage, volume shrinkage, total dry density, basic density, compressive strength, shear strength and flexural strength—were studied. ANOVA, bivariate correlation analysis, and principal component analysis were performed, which showed the effect of strip cutting on the physical and mechanical properties of bamboo. The results showed that the density, the total dry density, basic density, flexural strength and compressive strength of the strip cut bamboo were lower than those of the control stand. The radial line shrinkage and volume shrinkage were higher than those of the control stand. The chordal line shrinkage was higher than that of the control stand when the cutting bandwidth was 3 m and 5 m and lower than that of the control stand when the cutting bandwidth was 8 m, 12 m and 15 m. The shear strength was lower than that of the control stand when the harvesting bandwidth was 3 m, 5 m and 8 m and higher than that of the control stand when the harvesting bandwidth was 12 m and 15 m. There are different degrees of correlation between the eight physical and mechanical performance indicators. The comprehensive score of the physical and mechanical properties of bamboo in the control stand was 1.30, and the comprehensive score of bamboo in strip harvesting was between 0.37 and 1.25, with an average score of 0.95. The results show that strip cutting can save the time and costs associated with harvesting Moso bamboo forests, but different cutting widths can reduce the physical and mechanical properties of Moso bamboo in different degrees.
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- 2023
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17. Bidirectional drought‐related canopy dynamics across pantropical forests: a satellite‐based statistical analysis
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Liyang Liu, Fanxi Gong, Xiuzhi Chen, Yongxian Su, Lei Fan, Shengbiao Wu, Xueqin Yang, Jing Zhang, Wenping Yuan, Philippe Ciais, and Chenghu Zhou
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Canopy variability ,climate change ,drought ,satellite remote sensing ,tropical forests ,tropical phenology ,Technology ,Ecology ,QH540-549.5 - Abstract
Abstract Droughts cause extreme anomalies in tropical forest growth, but the direction and magnitude of tropical forests in response to droughts are still widely debated. Here, we used four satellite‐based canopy growth proxies (CGPs), including three optical and one passive microwave, and in situ fluxes observations from eddy covariance (EC) measurements for a retrospective investigation of the impacts of historical droughts on tropical forest growth from a statistical point of view. Results indicate two opposite directions in drought‐related canopy dynamics across pantropical forests. The canopy of tropical forests with higher CGPs is more vulnerable to drought stress and recovers faster in the post‐drought recovery period. In contrast, the canopy of tropical forests with lower CGPs increases during the drought period and declines in the subsequent recovery period, which is beyond general expectation. In situ measurements from eddy‐covariance flux towers showed that forests with higher gross primary production and latent heat flux decreased photosynthesis and evapotranspiration during the drought period but increased photosynthesis and evapotranspiration faster during the post‐drought recovery period, supporting the findings from satellite observations. Our statistical analysis against climatic factors predicts that higher‐CGPs tress with probably taller and bigger canopies are more responsive to shortage of water availability caused by drought; while lower‐CGPs tress with shorter and smaller canopies are more responsive to sunlight availability and tend to increase their canopy leaves and enhance photosynthesis in sunnier days during the drought period. Our results highlight the differences in tropical forests in responding to drought stress, which are worth incorporated in Earth system models for time‐series evaluations.
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- 2022
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18. Constructing two-level nonlinear mixed-effects crown width models for Moso bamboo in China
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Xiao Zhou, Zhen Li, Liyang Liu, Ram P. Sharma, Fengying Guan, and Shaohui Fan
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growth function ,random effect ,variance-stabilizing function ,sampling strategy ,bamboo forest management ,Plant culture ,SB1-1110 - Abstract
Bamboo crown width (CW) is a reliable index for evaluating growth, yield, health and vitality of bamboo, and light capture ability and carbon fixation efficiency of bamboo forests. Based on statistical results produced from fitting the eight basic growth functions using data from 1374 Phyllostachys pubescens in Yixing, Jiangsu Province, China, this study identified the most suitable function (logistic function) to construct a two-level mixed effects (NLME) CW model with the forest block and sample plot-level effects included as random effects in the model. Four methods for selecting sample bamboos per sample plot (largest bamboo, medium-sized bamboo, smallest bamboo, and randomly selected bamboos) and eight sample sizes (1–8 selected bamboos per sample plot) were evaluated to calibrate our NLME CW model. Using diameter at breast height (DBH), height to crown base (HCB), arithmetic mean diameter at breast height (MDBH), and height (H) as predictor variables, the model produced the best fit statistics (Max R2, min RMSE, and TRE). This model was further improved by introducing random effects at two levels. The results showed a positive correlation of CW with HCB and DBH and a negative correlation with H. The smallest two bamboo poles per sample plot used to estimate the random effects of the NLME model provided a satisfactory compromise regarding measurement cost, model efficiency, and prediction accuracy. The presented NLME CW model may guide effective management and carbon estimation of bamboo forests.
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- 2023
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19. Corrosion-resistant polyurethane coatings from structure-homogenized biorefinery lignin through fractionation and oxypropylation
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Xiang Wang, R.M. Oshani Nayanathara, Weiqi Leng, Eugene B. Caldona, Liyang Liu, Rigoberto C. Advincula, Zhao Zhang, and Xuefeng Zhang
- Subjects
Biorefinery lignin ,Structure homogenization ,Polyurethane ,Anticorrosive coating ,Agriculture (General) ,S1-972 ,Nutrition. Foods and food supply ,TX341-641 - Abstract
Using lignin for polyurethane (PU) synthesis is challenging because of its heterogeneous structure, i.e., broad molecule weight (MW) distribution and diverse hydroxyl (OH) functionality. This complexity influences the crosslinking reaction between lignin and isocyanate and affects the quality of PU products. Here, we propose a two-step strategy for lignin structure homogenization by lowering its MW and uniforming OH functionality (step 2). Step 1 involves a bioethanol fractionation process, yielding fractionated lignin with one order lower MW than the raw lignin while exhibiting better processability for the subsequent process. Step 2 is performed by an oxyalkylation process using fractionated lignin that converts phenolic and carboxylic OHs to aliphatic OHs. As a result, we obtained structure-homogenized lignin with good compatibility and crosslinking with hexamethylene diisocyanate for PU coating synthesis. Moreover, PU coatings prepared from structure-homogenized lignin display a defect-free microscopic structure and show better corrosion resistance than coatings fabricated from its raw lignin alternative. Overall, the structure homogenization process is a beneficial way of using lignin as biopolyol in PU synthesis toward the application-oriented design of corrosion-resistant lignin-based PU coatings.
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- 2022
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20. Homogeneous label-free electrochemiluminescence biosensor based on double-driven amplification and magnetic graphene platform
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Jiancong Ni, Liyang Liu, Xiaohui Dai, Danni Huang, Xiaoping Chen, Weiqiang Yang, Zhenyu Lin, Longhua Guo, and Qingxiang Wang
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Homogeneous electrochemiluminescence ,DNA biosensor ,Double-driven amplification ,Magnetic separation ,Biotechnology ,TP248.13-248.65 - Abstract
Traditional DNA-based electrochemiluminescence (ECL) biosensors generally require a laborious and time-consuming process of electrode modification. Although immobilization-free homogeneous electrochemical approaches have been proposed, the problems of low detectable signals from indicators and high background interferences resulting from label-free sensors remain unsolved. Herein, a new type of homogeneous label-free ECL biosensor for aflatoxin B1 (AFB1) is designed based on a double-driven signal-amplifying strategy (combination of entropy-driven and nuclease-driven) and a background reduction by magnetic graphene oxide (M-GO). The target of AFB1 competitively binds the aptamer in the duplex DNA, leading to the release of the catalyst strand which would further bind the Ru(bpy)32+-Probe (Ru-Probe) absorbed in M-GO based on the principle of entropy increase. In the presence of exonuclease III, the Ru-Probe is degraded to release Ru(bpy)32+ for detection, and the catalyst strand is preserved to trigger much more Ru(bpy)32+ released. So the nuclease-driven combined with entropy-driven amplifying strategy greatly enhances the ECL signal. Moreover, the unreacted Ru-Probes adsorbed in M-GO are removed by the magnetic separation, providing the background signal was reduced as far as possible. Under the optimum conditions, the enhanced ECL signal exhibits a linear relationship with the AFB1 concentration in the range of 1 pM–100 nM with a detection limit of 20 fM. The homogeneous ECL biosensor is successfully applied to determine AFB1 in corn samples with high sensitivity and selectivity. By altering the probes employed, this type of novel ECL biosensor is promising for further determination of diverse targets which are trace contaminants in food, environment, and the disease biomarkers.
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- 2022
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21. Soil Nutrient, Salinity, and Alkalinity Responses of Dendrocalamopsis oldhami in High-Latitude Greenhouses Depending on Planting Year and Nitrogen Application
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Zixu Yin, Xiao Zhou, Dawei Fu, Xuan Zhang, Liyang Liu, Zhen Li, and Fengying Guan
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planting years ,nitrogen ,ESP ,pH ,salt ions ,nutrient ,Plant ecology ,QK900-989 - Abstract
This study explored the viability of greenhouse cultivation of Dendrocalamopsis oldhami under the “South Bamboo North Transplanting” initiative. In this study, the effects of planting year and nitrogen application on changes in soil nutrient levels, salinity, and alkalinity over the plant growth period were explored. After the introduction and planting of bamboo in 2017, a soil layer with a thickness of 0–40 cm was sampled at the end of the shooting stage in the greenhouse between 2017 and 2019 (late August), and the bamboo shoot yield and standing culm density were measured. Following the application of nitrogen to the bamboo groves in 2019, three nitrogen levels were established: no nitrogen (N1:0 g grove−1), medium nitrogen (N2:540 g grove−1), and high nitrogen (N3:1080 g grove−1). Soil layers at depths of 0–20 and 20–40 cm were sampled during the shoot elongation stage (late May) and at the end of the shooting stage (late August). The yield and nutrient content of bamboo shoots under different nitrogen treatments were also investigated. The results showed that Ca2+ and HCO3− were the main salt ions in greenhouse soil. With later planting years, the total number of cations (Ca2+, Na+, Mg2+, and K+) decreased, whereas the total number of anions (HCO3−, SO42−, NO3−, and Cl−) increased, resulting in a decrease in the percentage of exchangeable sodium (ESP), pH, and electrical conductivity (EC). The diameter at breast height, individual weight, and quantity of bamboo shoots increased annually, and the standing culm density increased by 1.4 times. Each year, the total nitrogen content decreased, whereas the alkali-hydrolyzed nitrogen, available phosphorus, and available potassium contents increased. Nitrogen application resulted in a significant decrease in ESP and pH and an increase in the total anion, cation, and EC values. It also reduced soil organic carbon, total nitrogen, total phosphorus, total potassium, available phosphorus, and available potassium. Nitrogen application increased the number of bamboo shoots, total yield, and accumulation of N and P; however, there was no significant difference between N2 and N3. In conclusion, the salinization of calcareous soil was alleviated, and the available nutrients were activated following the introduction of D. oldhami from south to north. The mineralization rates of organic matter and soil fertility increased. Soil acidification and EC decreased at the end of the shoot stage. Nitrogen application acidified the soil, and the yield and soil salt accumulation increased with increasing nitrogen levels. The nutrient uptake efficiencies of nutrients at high nitrogen levels were lower than those at medium nitrogen levels. Therefore, soil salt concentrations with values 0.26 < EC < 0.42 hindered the nutrient uptake of D. oldhami.
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- 2023
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22. The Effect of Peripheral Immune Cell Counts on the Risk of Multiple Sclerosis: A Mendelian Randomization Study
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Di He, Liyang Liu, Dongchao Shen, Peng Zou, and Liying Cui
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multiple sclerosis ,mendelian randomization (MR) ,genome wide association study (GWAS) ,peripheral immune cell count ,NKT cell ,Immunologic diseases. Allergy ,RC581-607 - Abstract
ObjectivesMultiple sclerosis (MS) is a complex central nervous system (CNS) demyelinating disease, the etiology of which involves the interplay between genetic and environmental factors. We aimed to determine whether genetically predicted peripheral immune cell counts may have a causal effect on MS.MethodsWe used genetic variants strongly associated with cell counts of circulating leukocyte, lymphocyte, monocyte, neutrophil, eosinophil, and basophil, in addition to some subpopulations of T and B lymphocyte, as instrumental variables (IVs) to perform Mendelian randomization (MR) analyses. The effect of immune cell counts on MS risk was measured using the summary statistics from the International Multiple Sclerosis Genetics Consortium (IMSGC) genome-wide association studies (GWAS).ResultsOur findings indicated that higher leucocyte count [odds ratio (OR), 1.24; 95% confidence interval (CI), 1.07 - 1.43; p = 0.0039] and lymphocyte count (OR, 1.17; 95% CI, 1.01 – 1.35; p = 0.0317) were causally associated with MS susceptibility. In addition, we also found that increase of genetically predicted natural killer T (NKT) cell count is also associated with an increase MS risk (OR, 1.24; 95% CI, 1.06 - 1.45; p = 0.0082).ConclusionsThese findings show that the genetic predisposition to higher peripheral immune cell counts can exert a causal effect on MS risk, which confirms the crucial role played by peripheral immunity in MS. Particularly, the causal association between NKT cell count and MS underscores the relevance of exploring the functional roles of NKT cells in disease pathogenesis in future.
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- 2022
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23. Partitioning of three phenology rhythms in American tropical and subtropical forests using remotely sensed solar-induced chlorophyll fluorescence and field litterfall observations
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Fanxi Gong, Xiuzhi Chen, Wenping Yuan, Yongxian Su, Xueqin Yang, Liyang Liu, Qingling Sun, Jianping Wu, Yuhang Dai, and Jiali Shang
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Tropical/subtropical forests ,Leaf phenology ,Litterfall ,Water regulation strategies ,Solar-induced chlorophyll fluorescence ,Physical geography ,GB3-5030 ,Environmental sciences ,GE1-350 - Abstract
The climatic drivers of leaf phenology and water stress regulation strategies in tropical/subtropical forest biomes are poorly understood on the continental scale. Widespread field observations and remotely sensed plant phenology and physiology data across tropical forest ecosystems at various scales provide new insight into the response of tropical forests to climate change. In this study, we collected seasonal litterfall data from 65 sites across tropical/subtropical America for analysis against remotely sensed photosynthetic and climatic indicators. We proposed an integrated field and remote sensing approach for partitioning three rhythms of forest phenology across tropical and subtropical America in response to various wet- and dry-season variabilities in sunlight, liquid water supply and atmospheric dryness. The results showed that in a dry-season leaf shedding and rejuvenation phenology, trees encounter limited soil water stress, shift to a young canopy by replacing old leaves with new leaves, and regulate water use through the xylem to maximize light capture and productivity. In a wet-season leaf shedding & rejuvenation phenology, trees on the contrary shed and rejuvenate canopy leaves to maximize light use and increase photosynthesis during the sunny wet season. Trees show a dominant stomatal regulation of seasonal water use, resulting in considerable seasonal changes in canopy photosynthesis and transpiration. However, in a dry-season leaf shedding and wet-season rejuvenation phenology, trees shed leaves due to water stresses and grew new leaves to maximize photosynthesis with sufficient water availability. Trees shift from wet-season stomatal regulation to dry-season xylem regulation with fewer canopy leaves. Our findings provide new physiological insight into the mechanism of sunlight availability, liquid water supply and atmospheric dryness in driving leaf phenology and photosynthesis across tropical and subtropical forests.
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- 2022
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24. A comprehensive framework for seasonal controls of leaf abscission and productivity in evergreen broadleaved tropical and subtropical forests
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Xueqin Yang, Jianping Wu, Xiuzhi Chen, Philippe Ciais, Fabienne Maignan, Wenping Yuan, Shilong Piao, Song Yang, Fanxi Gong, Yongxian Su, Yuhang Dai, Liyang Liu, Haicheng Zhang, Damien Bonal, Hui Liu, Guixing Chen, Haibo Lu, Shengbiao Wu, Lei Fan, Pierre Gentine, and S. Joseph Wright
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tropical forest ,leaf abscission and productivity ,plant adaptive strategy ,climate and phenology regime ,climatic driver ,Science (General) ,Q1-390 - Abstract
Summary: Relationships among productivity, leaf phenology, and seasonal variation in moisture and light availability are poorly understood for evergreen broadleaved tropical/subtropical forests, which contribute 25% of terrestrial productivity. On the one hand, as moisture availability declines, trees shed leaves to reduce transpiration and the risk of hydraulic failure. On the other hand, increases in light availability promote the replacement of senescent leaves to increase productivity. Here, we provide a comprehensive framework that relates the seasonality of climate, leaf abscission, and leaf productivity across the evergreen broadleaved tropical/subtropical forest biome. The seasonal correlation between rainfall and light availability varies from strongly negative to strongly positive across the tropics and maps onto the seasonal correlation between litterfall mass and productivity for 68 forests. Where rainfall and light covary positively, litterfall and productivity also covary positively and are always greater in the wetter sunnier season. Where rainfall and light covary negatively, litterfall and productivity are always greater in the drier and sunnier season if moisture supplies remain adequate; otherwise productivity is smaller in the drier sunnier season. This framework will improve the representation of tropical/subtropical forests in Earth system models and suggests how phenology and productivity will change as climate change alters the seasonality of cloud cover and rainfall across tropical/subtropical forests. Public summary: • Three climate-phenology regimes are identified across tropical and subtropical forest biomes • Where light and water limit plant in dry season, litterfall and productivity peak in sunny wet season • Where light or water alternately limits plant, productivity peaks in wet season with low litterfall • Where water does not limit plant, litterfall and productivity peak in sunny dry season
- Published
- 2021
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25. Remote Sensing of Seasonal Climatic Constraints on Leaf Phenology Across Pantropical Evergreen Forest Biome
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Qian Li, Xiuzhi Chen, Wenping Yuan, Haibo Lu, Ruoque Shen, Shengbiao Wu, Fanxi Gong, Yuhang Dai, Liyang Liu, Qingling Sun, Chaoqun Zhang, and Yongxian Su
- Subjects
remote sensing ,soil and atmospheric water stresses ,sunlight availability ,tropical evergreen forests ,tropical leaf phenology ,unimodal and bimodal phenology ,Environmental sciences ,GE1-350 ,Ecology ,QH540-549.5 - Abstract
Abstract Climatic drivers for canopy leaf shedding and flush of evergreen broadleaved forest biome are still unclear at the continental scale across tropical and subtropical region. This imposes a challenge for modeling pantropical photosynthesis seasonality in Earth system models. Here, we examined three potential climatic triggers, vapor pressure deficit–a proxy of atmospheric water deficit, downward shortwave incoming solar radiation–a proxy of sunlight availability, and terrestrial water storage–a proxy of soil water availability observed by the Gravity Recovery and Climate Experiment, by comparing with two satellite phenological proxies–the Enhanced Vegetation Index and Continuous Solar‐induced chlorophyll fluorescence. Results show that tropical leaf phenology varies greatly from equatorial bimodal seasonality to higher‐latitude unimodal seasonality. Sunlight availability dominantly controls the whole seasonal leaf phenology across the pantropical region. Atmospheric dryness is one main type of water stress for leaf phenology during the first half year. However, soil water stress strongly inhibits the first‐half of leaf phenology in tropical Asia and the second‐half of leaf phenology in Congo, but shows rare constraint on the leaf phenology in Amazon. Ignoring these various roles of soil moisture availability and atmospheric dryness in influencing tropical leaf phenology might lead to unexpected uncertainty for predicting the water and carbon cycles of tropical forest ecosystem in Earth system models.
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- 2021
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26. Hollow Fiber Membrane for Organic Solvent Nanofiltration: A Mini Review
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Liyang Liu, Shaoxiao Liu, Enlin Wang, and Baowei Su
- Subjects
organic solvent nanofiltration (OSN) ,hollow fiber membrane ,review ,Chemical technology ,TP1-1185 ,Chemical engineering ,TP155-156 - Abstract
Organic solvents take up 80% of the total chemicals used in pharmaceutical and related industries, while their reuse rate is less than 50%. Traditional solvent treatment methods such as distillation and evaporation have many disadvantages such as high cost, environmental unfriendliness, and difficulty in recovering heat-sensitive, high-value molecules. Organic solvent nanofiltration (OSN) has been a prevalent research topic for the separation and purification of organic solvent systems since the beginning of this century with the benefits of no-phase change, high operational flexibility, low cost, as well as environmental friendliness. Especially, hollow fiber (HF) OSN membranes have gained a lot of attention due to their high packing density and easy scale-up as compared with flat-sheet OSN membranes. This paper critically reviewed the recent research progress in the preparation of HF OSN membranes with high performance, including different materials, preparation methods, and modification treatments. This paper also predicts the future direction of HF OSN membrane development.
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- 2022
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27. Hard Carbons as Anodes in Sodium-Ion Batteries: Sodium Storage Mechanism and Optimization Strategies
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Liyang Liu, Ye Tian, Abubakar Abdussalam, Muhammad Rehan Hasan Shah Gilani, Wei Zhang, and Guobao Xu
- Subjects
hard carbon ,Sodium-ion batteries ,electrolyte ,anode ,carbon materials ,modification ,Organic chemistry ,QD241-441 - Abstract
Sodium-ion batteries (SIBs) are regarded as promising alternatives to lithium-ion batteries (LIBs) in the field of energy, especially in large-scale energy storage systems. Tremendous effort has been put into the electrode research of SIBs, and hard carbon (HC) stands out among the anode materials due to its advantages in cost, resource, industrial processes, and safety. However, different from the application of graphite in LIBs, HC, as a disordered carbon material, leaves more to be completely comprehended about its sodium storage mechanism, and there is still plenty of room for improvement in its capacity, rate performance and cycling performance. This paper reviews the research reports on HC materials in recent years, especially the research process of the sodium storage mechanism and the modification and optimization of HC materials. Finally, the review summarizes the sterling achievements and the challenges on the basis of recent progress, as well as the prospects on the development of HC anode materials in SIBs.
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- 2022
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28. Identification of the Spring Green-Up Date Derived from Satellite-Based Vegetation Index over a Heterogeneous Ecoregion
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Jianping Wu, Zhongbing Chang, Yongxian Su, Chaoqun Zhang, Xiong Wu, Chongyuan Bi, Liyang Liu, Xueqin Yang, and Xueyan Li
- Subjects
satellite-derived phenology ,spring green-up date ,vegetation index ,asynchronous phenology ,heterogeneous ecoregion ,Science - Abstract
Multiple methods have been developed to identify the transition threshold from the reconstructed satellite-derived normalized difference vegetation indices (NDVI) time series and to determine the inflection point corresponding to a certain phenology phase (e.g., the spring green-up date (GUD)). We address an issue that large uncertainties might occur in the inflection point identification of spring GUD using the traditional satellite-based methods since different vegetation types exhibit asynchronous phenological phases over a heterogeneous ecoregion. We tentatively developed a Maximum-derivative-based (MDB) method and provided inter-comparisons with two traditional methods to detect the turning points by the reconstructed time-series data of NDVI for identifying the GUD against long-term observations from the sites covered by a mixture of deciduous forest and herbages in the Pan European Phenology network. Results showed that higher annual mean temperature would advance the spring GUD, but the sensitive magnitudes differed depending on the vegetation type. Therefore, the asynchronization of phenological phases among different vegetation types would be more pronounced in the context of global warming. We found that the MDB method outperforms two other traditional methods (the 0.5-threshold-based method and the maximum-ratio-based method) in predicting the GUD of the subsequent-green-up vegetation type when compared with ground observation, especially at sites with observed GUD of herbages earlier than deciduous forest, while the Maximum-ratio-based method showed better performance for identifying GUDs of the foremost-green-up vegetation type. Although the new method improved in our study is not universally applicable on a global scale, our results, however, highlight the limitation of current inflection point identify algorithms in predicting the GUD derived from satellite-based vegetation indices datasets in an ecoregion with heterogeneous vegetation types and asynchronous phenological phases, which makes it helpful for us to better predict plant phenology on an ecoregion-scale under future ongoing climate warming.
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- 2022
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29. Quantitative Estimation of Oxidative Stress in Cancer Tissue Cells Through Gene Expression Data Analyses
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Liyang Liu, Haining Cui, and Ying Xu
- Subjects
oxidative stress ,genomic mutation ,transcriptomic data ,cancer ,TCGA data analysis ,computational prediction ,Genetics ,QH426-470 - Abstract
Quantitative assessment of the intracellular oxidative stress level is a very important problem since it is the basis for elucidation of the fundamental causes of metabolic changes in diseased human cells, particularly cancer. However, the problem proves to be very challenging to solve in vivo because of the complex nature of the problem. Here a computational method is presented for predicting the quantitative level of the intracellular oxidative stress in cancer tissue cells. The basic premise of the predictor is that the genomic mutation level is strongly associated with the intracellular oxidative stress level. Based on this, a statistical analysis is conducted to identify a set of enzyme-encoding genes, whose combined expression levels can well explain the mutation rates in individual cancer tissues in the TCGA database. We have assessed the validity of the predictor by assessing it against genes that are known to have anti-oxidative functions for specific types of oxidative stressors. Then the applications of the predictor are conducted to illustrate its utility.
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- 2020
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30. Novel Representation of Leaf Phenology Improves Simulation of Amazonian Evergreen Forest Photosynthesis in a Land Surface Model
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Xiuzhi Chen, Fabienne Maignan, Nicolas Viovy, Ana Bastos, Daniel Goll, Jin Wu, Liyang Liu, Chao Yue, Shushi Peng, Wenping Yuan, Adriana Castro daConceição, Michael O'Sullivan, and Philippe Ciais
- Subjects
Amazon ,tropical forest phenology ,gross primary production (GPP) ,litterfall ,carbon allocation ,carbon and water fluxes ,Physical geography ,GB3-5030 ,Oceanography ,GC1-1581 - Abstract
Abstract Leaf phenology in the humid tropics largely regulates the seasonality of forest carbon and water exchange. However, it is inadequately represented in most global land surface models due to limited understanding of its controls. Based on intensive field studies at four Amazonian evergreen forests, we propose a novel, quantitative representation of tropical forest leaf phenology, which links multiple environmental variables with the seasonality of new leaf production and old leaf litterfall. The new phenology simulates higher rates of leaf turnover (new leaves replacing old leaves) in dry seasons with more sunlight, which is then implemented in ORCHIDEE, together with recent findings of ontogeny‐associated photosynthetic capacity, and is evaluated against ground‐based measurements of leaf phenology (canopy leaf area index and litterfall), eddy covariance fluxes (photosynthesis and latent heat), and carbon allocations from field observations. Results show the periodical cycles of solar radiation and vapor pressure deficit are the two most important environmental variables that are empirically related to new leaf production and old leaf abscission in tropical evergreen forests. The model with new representation of leaf phenology captures the seasonality of canopy photosynthesis at three out of four sites, as well as the seasonality of litterfall, latent heat, and light use efficiency of photosynthesis at all tested sites, and improves the seasonality of carbon allocations to leaves, roots, and sapwoods. This study advances understanding of the environmental controls on tropical leaf phenology and offers an improved modeling tool for gridded simulations of interannual CO2 and water fluxes in the tropics.
- Published
- 2020
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31. Tongue coating microbiome as a potential biomarker for gastritis including precancerous cascade
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Jiaxing Cui, Hongfei Cui, Mingran Yang, Shiyu Du, Junfeng Li, Yingxue Li, Liyang Liu, Xuegong Zhang, and Shao Li
- Subjects
gastritis ,tongue coating ,metagenomics ,Campylobacter concisus ,non-invasive biomarker ,Cytology ,QH573-671 ,Animal biochemistry ,QP501-801 - Abstract
Abstract The development of gastritis is associated with an increased risk of gastric cancer. Current invasive gastritis diagnostic methods are not suitable for monitoring progress. In this work based on 78 gastritis patients and 50 healthy individuals, we observed that the variation of tongue-coating microbiota was associated with the occurrence and development of gastritis. Twenty-one microbial species were identified for differentiating tongue-coating microbiomes of gastritis and healthy individuals. Pathways such as microbial metabolism in diverse environments, biosynthesis of antibiotics and bacterial chemotaxis were up-regulated in gastritis patients. The abundance of Campylobacter concisus was found associated with the gastric precancerous cascade. Furthermore, Campylobacter concisus could be detected in tongue coating and gastric fluid in a validation cohort containing 38 gastritis patients. These observations provided biological evidence of tongue diagnosis in traditional Chinese medicine, and indicated that tongue-coating microbiome could be a potential non-invasive biomarker, which might be suitable for long-term monitoring of gastritis.
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- 2018
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32. Digitizing the thermal and hydrological parameters of land surface in subtropical China using AMSR-E brightness temperatures
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Yongxian Su, Xiuzhi Chen, Hua Su, Liyang Liu, and Jishan Liao
- Subjects
surface soil moisture ,land surface temperature ,physical-based radiative transfer model ,amsr-e ,brightness temperatures ,Mathematical geography. Cartography ,GA1-1776 - Abstract
Digitizing the land surface temperature (Ts) and surface soil moisture (mv) is essential for developing the intelligent Digital Earth. Here, we developed a two parameter physical-based passive microwave remote sensing model for jointly retrieving Ts and mv using the dual-polarized Tb of Aqua satellite advanced microwave scanning radiometer (AMSR-E) C-band (6.9 GHz) based on the simplified radiative transfer equation. Validation using in situ Ts and mv in southern China showed the average root mean square errors (RMSE) of Ts and mv retrievals reach 2.42 K (R2 = 0.61, n = 351) and 0.025 g cm−3 (R2 = 0.68, n = 663), respectively. The results were also validated using global in situ Ts (n = 2362) and mv (n = 1657) of International Soil Moisture Network. The corresponding RMSE are 3.44 k (R2 = 0.86) and 0.039 g cm−3 (R2 = 0.83), respectively. The monthly variations of model-derived Ts and mv are highly consistent with those of the Moderate Resolution Imaging Spectroradiometer Ts (R2 = 0.57; RMSE = 2.91 k) and ECV_SM mv (R2 = 0.51; RMSE = 0.045 g cm−3), respectively. Overall, this paper indicates an effective way to jointly modeling Ts and mv using passive microwave remote sensing.
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- 2017
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33. Quantifying the biophysical effects of forests on local air temperature using a novel three-layered land surface energy balance model
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Yongxian Su, Liyang Liu, Jianping Wu, Xiuzhi Chen, Jiali Shang, Philippe Ciais, Guoyi Zhou, Raffaele Lafortezza, Yingping Wang, Wenping Yuan, Yilong Wang, Hongou Zhang, Guangqing Huang, and Ningsheng Huang
- Subjects
Environmental sciences ,GE1-350 - Abstract
The well-documented energy balance dynamics within forest ecosystems are poorly implemented in studies of the biophysical effects of forests. This results in limitations to the accurate quantification of forest cooling/warming on local air temperature. Taking into consideration the forest air space, this study proposes a three-layered (canopy, forest air space and soil [CAS]) land surface energy balance model to simulate air temperature within forest spaces (Taf) and subsequently to evaluate its biophysical effects on forest cooling/warming, i.e., the air temperature gradient (∆Ta) between the Taf and air temperature of open spaces (Tao) (∆Ta = Taf − Tao). We test the model using field data for 23 sites across 10 cities worldwide; the model shows satisfactory performance with the test data. High-latitude forests show greater seasonal dynamics of ∆Ta, generating considerable cooling of local air temperatures in warm seasons but minimal cooling or even warming effects during cool seasons, while low-latitude tropical forests always exert cooling effects with less interannual variability. The interannual dynamics of ∆Ta are significantly related to the seasonality of solar geometry and canopy leaf phenology. The differences between forest canopy temperature (Tc) and Tao, which are the two most important terms attributed by the CAS model in impacting Taf, explain a large part of forest cooling and warming (May–July: R2 = 0.35; November–January: R2 = 0.51). The novel CAS model provides a feasible way to represent the energy balance within forest ecosystems and to assess its impacts on local air temperatures globally. Keywords: Forest cooling/warming, Forest biophysical effects, Radiative transfer equation, Land-atmosphere model, Local environmental health, Climate warming mitigation
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- 2019
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34. The Novel Microwave Temperature Vegetation Drought Index (MTVDI) Captures Canopy Seasonality across Amazonian Tropical Evergreen Forests
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Liyang Liu, Xueqin Yang, Fanxi Gong, Yongxian Su, Guangqing Huang, and Xiuzhi Chen
- Subjects
Microwave Temperature Vegetation Drought Index (MTVDI) ,tropical evergreen forests ,canopy growth index ,photosynthesis seasonality ,tropical phenology ,Amazon ,Science - Abstract
Despite its perennial canopy, the Amazonian tropical evergreen forest shows significant canopy growth seasonality, which has been represented by optical satellite-based observations. In this paper, a new Microwave Temperature–Vegetation Drought Index (MTVDI) based on Advanced Microwave Scanning Radiometer for the Earth Observing System (AMSR-E) sensors was used to capture the canopy seasonality from 2003 to 2010 in comparison with four climatic dryness indicators (Palmer Drought Severity Index (PDSI), Climatological Water Deficit (CWD), Terrestrial Water Storage (TWS), Vapor Pressure Deficit (VPD)) and two photosynthesis proxies (Enhanced Vegetation Index (EVI) and Solar-Induced chlorophyll Fluorescence (SIF)), respectively. Our results suggest that the MTVDI shows opposite seasonal variability with two photosynthesis proxies and performs better than the four climatic dryness indicators in reflecting the canopy photosynthesis seasonality of tropical forests in the Amazon. Besides, the MTVDI captures wet regions that show green-up during the dry season with mean annual precipitation higher than 2000 mm per year. The MTVDI provides a new way for monitoring the canopy seasonality of tropical forests from microwave signals.
- Published
- 2021
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35. Estimating Rainfall Interception of Vegetation Canopy from MODIS Imageries in Southern China
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Jianping Wu, Liyang Liu, Caihong Sun, Yongxian Su, Changjian Wang, Ji Yang, Jiayuan Liao, Xiaolei He, Qian Li, Chaoqun Zhang, and Hongou Zhang
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rainfall interception ,vegetation canopy ,spatial and temporal pattern ,modis_lai ,remote sensing ,basin scale ,Science - Abstract
The interception of rainfall by vegetation canopies plays an important role in the hydrologic process of ecosystems. Most estimates of canopy rainfall interception in present studies are mainly through field observations at the plot region. However, it is difficult, yet important, to map the regional rainfall interception by vegetation canopy at a larger scale, especially in the southern rainy areas of China. To obtain a better understanding of the spatiotemporal variation of vegetation canopy rainfall interception with regard to the basin scale in this region, we extended a rainfall interception model by combining the observed rainfall data and moderate resolution imaging spectroradiometer leaf area index (MODIS_LAI) data to quantitatively estimate the vegetation canopy rainfall interception rate (CRIR) at small/medium basin scales in Guangdong Province, which is undergoing large changes in vegetation cover due to rapid urban expansion in the area. The results showed that the CRIR in Guangdong declined continuously during 2004−2012, but increased slightly in 2016, and the spatial variability of CRIR showed a diminishing yearly trend. The CRIR also exhibited a distinctive spatial pattern, with a higher rate to the east and west of the mountainous areas and a lower rate in the central mountainous and coastal areas. This pattern was more closely related to the spatial variation of the LAI than that of rainfall due to frequent extreme rainfall events saturating vegetation leaves. Further analysis demonstrated that forest coverage, instead of background climate, has a certain impact on the canopy rainfall interception, especially the proportion of broad-leaved forests in the basin, but more in-depth study is warranted in the future. In conclusion, the results of this study provide insights into the spatiotemporal variation of canopy rainfall interception at the basin scale of the Guangdong Province, and suggest that forest cover should be increased by adjusting the species composition to increase the proportion of native broad-leaved species based on the local condition within the basin. In addition, these results would be helpful in accurately assessing the impacts of forest ecosystems on regional water cycling, and provide scientific and practical implications for water resources management.
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- 2019
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36. Object-Aware Self-supervised Multi-Label Learning
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Kaixin, Xu, Liyang, Liu, Ziyuan, Zhao, Zeng, Zeng, and Veeravalli, Bharadwaj
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Multi-label Learning on Image data has been widely exploited with deep learning models. However, supervised training on deep CNN models often cannot discover sufficient discriminative features for classification. As a result, numerous self-supervision methods are proposed to learn more robust image representations. However, most self-supervised approaches focus on single-instance single-label data and fall short on more complex images with multiple objects. Therefore, we propose an Object-Aware Self-Supervision (OASS) method to obtain more fine-grained representations for multi-label learning, dynamically generating auxiliary tasks based on object locations. Secondly, the robust representation learned by OASS can be leveraged to efficiently generate Class-Specific Instances (CSI) in a proposal-free fashion to better guide multi-label supervision signal transfer to instances. Extensive experiments on the VOC2012 dataset for multi-label classification demonstrate the effectiveness of the proposed method against the state-of-the-art counterparts., Comment: Accepted by IEEE International Conference on Image Processing (ICIP 2022)
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- 2022
37. An efficient electrolyte additive of 1,3,6-hexanetricarbonitrile for high performance aqueous zinc-ion batteries
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Rui Wang, Liyang Liu, Shuhan Huang, Yuheng Wu, Xianghong Chen, Zhiyong Liang, and Jiantie Xu
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Biomaterials ,Colloid and Surface Chemistry ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials - Published
- 2023
38. Supplementary Tables 1-6 from Correlation of ERG Expression and DNA Methylation Biomarkers with Adverse Clinicopathologic Features of Prostate Cancer
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Theodorus van der Kwast, Bharati Bapat, Neil Fleshner, John Trachtenberg, Vaijayanti Pethe, Dominique Trudel, Liyang Liu, and Ken Kron
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XLS file, 44KB.
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- 2023
39. Data from Correlation of ERG Expression and DNA Methylation Biomarkers with Adverse Clinicopathologic Features of Prostate Cancer
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Theodorus van der Kwast, Bharati Bapat, Neil Fleshner, John Trachtenberg, Vaijayanti Pethe, Dominique Trudel, Liyang Liu, and Ken Kron
- Abstract
Purpose: Fusion of the TMPRSS2 gene with the ERG oncogene and aberrant DNA methylation patterns are commonly found in prostate cancer. The aim of this study was to analyze the relationship between ERG expression, DNA methylation of three biomarkers, and clinicopathologic features of prostate cancer.Experimental Design: Immunohistochemistry for ERG protein was conducted as a surrogate for TMPRSS2-ERG fusions. We analyzed methylation of CYP26A1, TBX15, and HOXD3 in 219 prostatectomy specimens by the quantitative MethyLight assay. DNA methylation was compared between ERG-positive and -negative cases and correlations of ERG and DNA methylation with clinicopathologic features were analyzed using χ2, Spearman correlation, logistic regression, and Cox regression.Results: ERG expression varied according to Gleason pattern (almost absent in pattern II, highest in pattern III, and lower in pattern IV/V) and showed a strong positive correlation with methylation levels of CYP26A1, TBX15, and HOXD3 (Spearman P < 0.005). TBX15 and HOXD3 methylation were significantly associated with pathologic stage, Gleason score, and Gleason pattern (P ≤ 0.015). In multivariate regression analysis, PSA, TBX15 high methylation, and HOXD3 high methylation were significantly associated with stage (P < 0.05), whereas ERG expression was negatively correlated with Gleason score (P = 0.003). In univariate time-to-recurrence analysis, a combination of HOXD3/TBX15 high methylation predicted recurrence in ERG-positive and -negative cases (P < 0.05).Conclusions:CYP26A1, TBX15, and HOXD3 are methylation markers of prostate cancer associated with ERG expression and clinicopathologic variables, suggesting that incorporation of these markers may be useful in a pre- and posttreatment clinical setting. Clin Cancer Res; 18(10); 2896–904. ©2012 AACR.
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- 2023
40. Supplementary Figures 1-6 from Correlation of ERG Expression and DNA Methylation Biomarkers with Adverse Clinicopathologic Features of Prostate Cancer
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Theodorus van der Kwast, Bharati Bapat, Neil Fleshner, John Trachtenberg, Vaijayanti Pethe, Dominique Trudel, Liyang Liu, and Ken Kron
- Abstract
PDF file, 282KB.
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- 2023
41. Cross-Talking Pathways of Forkhead Box O1 (FOXO1) Are Involved in the Pathogenesis of Alzheimer’s Disease and Huntington’s Disease
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Liyang Liu, Jun Bai, Fangxi Liu, Ying Xu, Mei Zhao, Chuansheng Zhao, and Zhike Zhou
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endocrine system ,Aging ,Article Subject ,Gene Expression ,Biochemistry ,Alzheimer Disease ,Phagosomes ,Databases, Genetic ,Humans ,Insulin ,Gene Regulatory Networks ,Receptors, Cytokine ,Cellular Senescence ,QH573-671 ,Forkhead Box Protein O1 ,nutritional and metabolic diseases ,Cell Biology ,General Medicine ,Huntington Disease ,Gene Expression Regulation ,Area Under Curve ,Cytokines ,Insulin Resistance ,Cytology ,Protein Processing, Post-Translational ,hormones, hormone substitutes, and hormone antagonists ,Signal Transduction - Abstract
Alzheimer’s disease (AD) and Huntington’s disease (HD) are destructive worldwide diseases. Efforts have been made to elucidate the process of these two diseases, yet the pathogenesis remains elusive as it involves a combination of multiple factors, including genetic and environmental ones. To explore the potential role of forkhead box O1 (FOXO1) in the development of AD and HD, we identified 1,853 differentially expressed genes (DEGs) from 19,414 background genes in both the AD&HD/control and FOXO1-low/high groups. Four coexpression modules were predicted by the weighted gene coexpression network analysis (WGCNA), among which blue and turquoise modules had the strongest correlation with AD&HD and high expression of FOXO1. Functional enrichment analysis showed that DEGs in these modules were enriched in phagosome, cytokine-cytokine receptor interaction, cellular senescence, FOXO signaling pathway, pathways of neurodegeneration, GABAergic synapse, and AGE-RAGE signaling pathway in diabetic complications. Furthermore, the cross-talking pathways of FOXO1 in AD and HD were jointly determined in a global regulatory network, such as the FOXO signaling pathway, cellular senescence, and AGE-RAGE signaling pathway in diabetic complications. Based on the performance evaluation of the area under the curve of 85.6%, FOXO1 could accurately predict the onset of AD and HD. We then identified the cross-talking pathways of FOXO1 in AD and HD, respectively. More specifically, FOXO1 was involved in the FOXO signaling pathway and cellular senescence in AD; correspondingly, FOXO1 participated in insulin resistance, insulin, and the FOXO signaling pathways in HD. Next, we use GSEA to validate the biological processes in AD&HD and FOXO1 expression. In GSEA analysis, regulation of protein maturation and regulation of protein processing were both enriched in the AD&HD and FOXO1-high groups, suggesting that FOXO1 may have implications in onset and progression of these two diseases through protein synthesis. Consequently, a high expression of FOXO1 is a potential pathogenic factor in both AD and HD involving mechanisms of the FOXO signaling pathway, AGE-RAGE signaling pathway in diabetic complications, and cellular senescence. Our findings provide a comprehensive perspective on the molecular function of FOXO1 in the pathogenesis of AD and HD.
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- 2022
42. Multifaceted Spatial and Functional Zonation of Cardiac Cells in Adult Human Heart
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Liang Chen, Kui Hua, Ningning Zhang, Jingyu Wang, Jian Meng, Zhenliang Hu, Haoxiang Gao, Fanhong Li, Yang Chen, Jie Ren, Liyang Liu, Qiming Zhou, Jin Gu, Jiangping Song, Xuegong Zhang, and Shengshou Hu
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Physiology (medical) ,Cardiology and Cardiovascular Medicine - Published
- 2022
43. A grid dataset of leaf age-dependent LAI seasonality product (Lad-LAI) over tropical and subtropical evergreen broadleaved forests
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Xueqin Yang, Xiuzhi Chen, Jiashun Ren, Wenping Yuan, Liyang Liu, Juxiu Liu, Dexiang Chen, Yihua Xiao, Shengbiao Wu, Lei Fan, Xiaoai Dai, and Yongxian Su
- Abstract
Quantification of large-scale leaf age-dependent leaf area index has been lacking in tropical and subtropical evergreen broadleaved forests (TEFs) despite the recognized importance of leaf age in influencing leaf photosynthetic capacity in this region. Here, we simplified the canopy leaves of TEFs into three age cohorts, i.e., young, mature and old one, with different photosynthesis capacity (Vc,max) and produced a first grid dataset of leaf age-dependent LAI product (referred to as Lad-LAI) over the continental scale from satellite observations of TROPOMI (the TROPOspheric Monitoring Instrument) sun-induced chlorophyll fluorescence (SIF) as a proxy of leaf photosynthesis. The seasonality of three LAI cohorts from the new Lad-LAI products agree well at the three sites (one in subtropical Asia and two in Amazon) with very fine collections of monthly LAI of young, mature and old leaves. Continental-scale comparisons with independent Moderate-resolution Imaging Spectroradiometer (MODIS) Enhanced Vegetation Index (EVI) products and 53 samples of in situ measurements of seasonal litterfall data also demonstrate the robustness of the LAI seasonality of the three leaf age cohorts. The spatial patterns clustered from the three LAI cohorts coincides with those clustered from climatic variables. And the young and mature LAI cohorts perform well in capturing a dry-season green-up of canopy leaves across the wet Amazonia areas where mean annual precipitation exceeds 2,000 mm yr−1, consistent with previous satellite data analysis. The new Lad-LAI products are primed to diagnose the adaption of tropical and subtropical forest to climate change; and will also help improve the development of phenology modules in Earth System Models. The proposed satellite-based approaches can provide reference for mapping finer temporal and spatial resolution LAI products with different leaf age cohorts. The Lad-LAI products are available at https://doi.org/10.6084/m9.figshare.21700955.v2 (Yang et al., 2022).
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- 2023
44. Underestimated Interannual Variability of Terrestrial Vegetation Production by Terrestrial Ecosystem Models
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Shangrong Lin, Zhongmin Hu, Yingping Wang, Xiuzhi Chen, Bin He, Zhaoliang Song, Shaobo Sun, Chaoyang Wu, Yi Zheng, Xiaosheng Xia, Liyang Liu, Jing Tang, Qing Sun, Fortunat Joos, Wenping Yuan, Laboratoire des Sciences du Climat et de l'Environnement [Gif-sur-Yvette] (LSCE), Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Modélisation des Surfaces et Interfaces Continentales (MOSAIC), and Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)
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Atmospheric Science ,Global and Planetary Change ,[SDU]Sciences of the Universe [physics] ,530 Physics ,interannual variability ,Environmental Chemistry ,GPP ,terrestrial ecosystem model ,General Environmental Science ,LAI - Abstract
Vegetation gross primary production (GPP) is the largest terrestrial carbon flux and plays an important role in regulating the carbon sink. Current terrestrial ecosystem models (TEMs) are indispensable tools for evaluating and predicting GPP. However, to which degree the TEMs can capture the interannual variability (IAV) of GPP remains unclear. With large data sets of remote sensing, in situ observations, and predictions of TEMs at a global scale, this study found that the current TEMs substantially underestimate the GPP IAV in comparison to observations at global flux towers. Our results also showed the larger underestimations of IAV in GPP at nonforest ecosystem types than forest types, especially in arid and semiarid grassland and shrubland. One cause of the underestimation is that the IAV in GPP predicted by models is strongly dependent on canopy structure, that is, leaf area index (LAI), and the models underestimate the changes of canopy physiology responding to climate change. On the other hand, the simulated interannual variations of LAI are much less than the observed. Our results highlight the importance of improving TEMs by precisely characterizing the contribution of canopy physiological changes on the IAV in GPP and of clarifying the reason for the underestimated IAV in LAI. With these efforts, it may be possible to accurately predict the IAV in GPP and the stability of the global carbon sink in the context of global climate change. Vegetation gross primary production (GPP) is the largest terrestrial carbon flux and plays an important role in regulating the carbon sink. Current terrestrial ecosystem models (TEMs) are indispensable tools for evaluating and predicting GPP. However, to which degree the TEMs can capture the interannual variability (IAV) of GPP remains unclear. With large data sets of remote sensing, in situ observations, and predictions of TEMs at a global scale, this study found that the current TEMs substantially underestimate the GPP IAV in comparison to observations at global flux towers. Our results also showed the larger underestimations of IAV in GPP at nonforest ecosystem types than forest types, especially in arid and semiarid grassland and shrubland. One cause of the underestimation is that the IAV in GPP predicted by models is strongly dependent on canopy structure, that is, leaf area index (LAI), and the models underestimate the changes of canopy physiology responding to climate change. On the other hand, the simulated interannual variations of LAI are much less than the observed. Our results highlight the importance of improving TEMs by precisely characterizing the contribution of canopy physiological changes on the IAV in GPP and of clarifying the reason for the underestimated IAV in LAI. With these efforts, it may be possible to accurately predict the IAV in GPP and the stability of the global carbon sink in the context of global climate change.
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- 2023
45. An Ultrasensitive PCR-Based CRISPR-Cas13a Method for the Detection of
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Yaxuan, Wang, Liyang, Liu, Xiaochuan, Liu, Kai, Wu, Xiaoyan, Zhu, Liyan, Ma, and Jianrong, Su
- Abstract
The rapid and simple detection of
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- 2022
46. Local-scale evaluation of the simulated interactions between energy, water and vegetation in ISBA, ORCHIDEE and a diagnostic model
- Author
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Jan De Pue, José Miguel Barrios, Liyang Liu, Philippe Ciais, Alirio Arboleda, Rafiq Hamdi, Manuela Balzarolo, Fabienne Maignan, Françoise Gellens-Meulenberghs, Laboratoire des Sciences du Climat et de l'Environnement [Gif-sur-Yvette] (LSCE), Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Modélisation des Surfaces et Interfaces Continentales (MOSAIC), and Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)
- Subjects
[SDU.OCEAN]Sciences of the Universe [physics]/Ocean, Atmosphere ,Chemistry ,Physics ,[SDU.ENVI]Sciences of the Universe [physics]/Continental interfaces, environment ,Biology ,Ecology, Evolution, Behavior and Systematics ,Earth-Surface Processes - Abstract
The processes involved in the exchange of water, energy and carbon in terrestrial ecosystems are strongly intertwined. To accurately represent the terrestrial biosphere in land surface models (LSMs), the intrinsic coupling between these processes is required. Soil moisture and leaf area index (LAI) are two key variables at the nexus of water, energy and vegetation. Here, we evaluated two prognostic LSMs (ISBA and ORCHIDEE) and a diagnostic model (based on the LSA SAF, Satellite Application Facility for Land Surface Analysis, algorithms) in their ability to simulate the latent heat flux (LE) and gross primary production (GPP) coherently and their interactions through LAI and soil moisture. The models were validated using in situ eddy covariance observations, soil moisture measurements and remote-sensing-based LAI. It was found that the diagnostic model performed consistently well, regardless of land cover, whereas important shortcomings of the prognostic models were revealed for herbaceous and dry sites. Despite their different architecture and parametrization, ISBA and ORCHIDEE shared some key weaknesses. In both models, LE and GPP were found to be oversensitive to drought stress. Though the simulated soil water dynamics could be improved, this was not the main cause of errors in the surface fluxes. Instead, these errors were strongly correlated to errors in LAI. The simulated phenological cycle in ISBA and ORCHIDEE was delayed compared to observations and failed to capture the observed seasonal variability. The feedback mechanism between GPP and LAI (i.e. the biomass allocation scheme) was identified as a key element to improve the intricate coupling between energy, water and vegetation in LSMs.
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- 2022
47. Litterfall seasonality and adaptive strategies of tropical and subtropical evergreen forests in China
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Xiuzhi Chen, Jianping Wu, Liyang Liu, Yuhang Dai, Xueqin Yang, Yongxian Su, Fanxi Gong, Qingling Sun, and Xiaodong Liu
- Subjects
Adaptive strategies ,Ecology ,medicine ,Environmental science ,Plant Science ,Subtropics ,Seasonality ,Plant litter ,Evergreen ,China ,medicine.disease ,Ecology, Evolution, Behavior and Systematics - Abstract
Tropical and subtropical evergreen broad-leaved forests (EBFs) and needle-leaved forests (ENFs) in China exhibit complex leaf shedding strategies in responses to soil water availability, vapor pressure deficits (VPDs) and sunlight availability. However, the seasonal variations and triggers of litterfall differ significantly in tropical/subtropical forests, and there are still many uncertainties. Herein, we aim to explore the distinct climatic factors of seasonal litterfall in a climate–phenology correlation framework. We collected seasonal litterfall data from 85 sites across tropical/subtropical China and used linear correlation coefficients between sunlight and rainfall to partition synchronous/asynchronous climates. Additional phase analysis and structural equation model analysis were conducted to model the climatic triggers of tropical phenology. Results indicated two types of tropical litterfall phenology under two types of climates. In synchronous climates, where seasonal sunlight and rainfall are positively correlated, the litterfall peak of the unimodal phenology and the first litterfall peak of the bimodal phenology both happen at the end of dry season. The second litterfall peak of the bimodal phenology occurs at the end of rainy season due to water stress. In asynchronous climates, where seasonal sunlight and rainfall are negatively correlated, VPD shows consistent seasonal variations with incoming sunlight. The leaf senescence is accelerated at the end of dry season by higher VPD; while soil water deficit is in anti-phase with sunlight and mainly controls the second litterfall peak of the bimodal phenology in EBF. Our findings provide an important reference for modeling tropical phenology in Earth system models.
- Published
- 2021
48. Bidirectional drought‐related canopy dynamics across pantropical forests: a satellite‐based statistical analysis
- Author
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Liyang Liu, Yongxian Su, Shengbiao Wu, Lei Fan, Philippe Ciais, Wenping Yuan, Xiuzhi Chen, Jing Zhang, Chenghu Zhou, Fanxi Gong, Xueqin Yang, Laboratoire des Sciences du Climat et de l'Environnement [Gif-sur-Yvette] (LSCE), Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Institut Pierre-Simon-Laplace (IPSL (FR_636)), École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), School of biological sciences (Hong Kong, Chine), The University of Hong Kong (HKU), 2020A151501091, 2020GDASYL‐20200102002, National Natural Science Foundation of China, NSFC: 31971458, 41971275, National Key Research and Development Program of China, NKRDPC: 2016YFA0602701, This research was funded by the National Key Research and Development Program of China, grant number 2016YFA0602701, the National Natural Science Foundation of China, grant numbers 31971458 and 41971275, Innovation Group Project of Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), grant number 311021009, the Guangdong Basic and Applied Basic Research Foundation, grant number 2020A151501091, GDAS Special Project of Science and Technology Development, grant number 2020GDASYL‐20200102002., and National Natural Science Foundation of China, grant numbers 31971458 and 41971275
- Subjects
tropical forests ,Canopy ,Technology ,satellite remote sensing ,Ecology ,tropical phenology ,Pantropical ,Climate change ,drought ,climate change ,[SDU]Sciences of the Universe [physics] ,Climatology ,Satellite remote sensing ,Environmental science ,Statistical analysis ,Satellite ,Computers in Earth Sciences ,QH540-549.5 ,Ecology, Evolution, Behavior and Systematics ,Canopy variability ,Nature and Landscape Conservation - Abstract
International audience; Droughts cause extreme anomalies in tropical forest growth, but the direction and magnitude of tropical forests in response to droughts are still widely debated. Here, we used four satellite-based canopy growth proxies (CGPs), including three optical and one passive microwave, and in situ fluxes observations from eddy covariance (EC) measurements for a retrospective investigation of the impacts of historical droughts on tropical forest growth from a statistical point of view. Results indicate two opposite directions in drought-related canopy dynamics across pantropical forests. The canopy of tropical forests with higher CGPs is more vulnerable to drought stress and recovers faster in the post-drought recovery period. In contrast, the canopy of tropical forests with lower CGPs increases during the drought period and declines in the subsequent recovery period, which is beyond general expectation. In situ measurements from eddy-covariance flux towers showed that forests with higher gross primary production and latent heat flux decreased photosynthesis and evapotranspiration during the drought period but increased photosynthesis and evapotranspiration faster during the post-drought recovery period, supporting the findings from satellite observations. Our statistical analysis against climatic factors predicts that higher-CGPs tress with probably taller and bigger canopies are more responsive to shortage of water availability caused by drought; while lower-CGPs tress with shorter and smaller canopies are more responsive to sunlight availability and tend to increase their canopy leaves and enhance photosynthesis in sunnier days during the drought period. Our results highlight the differences in tropical forests in responding to drought stress, which are worth incorporated in Earth system models for time-series evaluations.
- Published
- 2021
49. Quantitative estimation for the impact of mining activities on vegetation phenology and identifying its controlling factors from Sentinel-2 time series
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Xiaofei Sun, Linguo Yuan, Meng Liu, Shuneng Liang, Dongfeng Li, Liyang Liu, Laboratoire des Sciences du Climat et de l'Environnement [Gif-sur-Yvette] (LSCE), and Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)
- Subjects
[SDU.OCEAN]Sciences of the Universe [physics]/Ocean, Atmosphere ,Global and Planetary Change ,Management, Monitoring, Policy and Law ,Computers in Earth Sciences ,[SDU.ENVI]Sciences of the Universe [physics]/Continental interfaces, environment ,Earth-Surface Processes - Abstract
International audience
- Published
- 2022
50. Climatic and biotic factors influencing regional declines and recovery of tropical forest biomass from the 2015/16 El Niño
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Hui Yang, Philippe Ciais, Jean-Pierre Wigneron, Jérôme Chave, Oliver Cartus, Xiuzhi Chen, Lei Fan, Julia K. Green, Yuanyuan Huang, Emilie Joetzjer, Heather Kay, David Makowski, Fabienne Maignan, Maurizio Santoro, Shengli Tao, Liyang Liu, Yitong Yao, Laboratoire des Sciences du Climat et de l'Environnement [Gif-sur-Yvette] (LSCE), Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Interactions Sol Plante Atmosphère (UMR ISPA), Ecole Nationale Supérieure des Sciences Agronomiques de Bordeaux-Aquitaine (Bordeaux Sciences Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Evolution et Diversité Biologique (EDB), Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS), Gamma Remote Sensing Research and Consulting AG, National Sun Yat-Sen University (NSYSU), Southwest Forestry University (SWFU), Commonwealth Scientific and Industrial Research Organisation [Canberra] (CSIRO), Centre national de recherches météorologiques (CNRM), Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire Midi-Pyrénées (OMP), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Centre National de la Recherche Scientifique (CNRS), Aberystwyth University, Mathématiques et Informatique Appliquées (MIA Paris-Saclay), AgroParisTech-Université Paris-Saclay-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Modélisation des Surfaces et Interfaces Continentales (MOSAIC), Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), and European SpaceAgency (ESA) as part of the CCI Biomass project of the Climate Change Initiative(ESA ESRIN/Contract Number 4000123662)
- Subjects
El Nino-Southern Oscillation ,tropical forest ,Tropical Climate ,Multidisciplinary ,Rainforest ,[SDE.MCG]Environmental Sciences/Global Changes ,Water ,drought ,Droughts ,Soil ,recovery ,[STAT.ML]Statistics [stat]/Machine Learning [stat.ML] ,Biomass ,forest structure - Abstract
The 2015/16 El Niño brought severe drought and record-breaking temperatures in the tropics. Here, using satellite-based L-band microwave vegetation optical depth, we mapped changes of above-ground biomass (AGB) during the drought and in subsequent years up to 2019. Over more than 60% of drought-affected intact forests, AGB reduced during the drought, except in the wettest part of the central Amazon, where it declined 1 y later. By the end of 2019, only 40% of AGB reduced intact forests had fully recovered to the predrought level. Using random-forest models, we found that the magnitude of AGB losses during the drought was mainly associated with regionally distinct patterns of soil water deficits and soil clay content. For the AGB recovery, we found strong influences of AGB losses during the drought and of γ . γ is a parameter related to canopy structure and is defined as the ratio of two relative height (RH) metrics of Geoscience Laser Altimeter System (GLAS) waveform data—RH25 (25% energy return height) and RH100 (100% energy return height; i.e., top canopy height). A high γ may reflect forests with a tall understory, thick and closed canopy, and/or without degradation. Such forests with a high γ ( γ ≥ 0.3) appear to have a stronger capacity to recover than low- γ ones. Our results highlight the importance of forest structure when predicting the consequences of future drought stress in the tropics.
- Published
- 2022
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