28 results on '"Li-Fu, Hu"'
Search Results
2. Development of a non-invasive method, multiplex methylation specific PCR (MMSP), for early diagnosis of nasopharyngeal carcinoma.
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Zhe Zhang, Di Sun, Susanna Hilda Hutajulu, Imran Nawaz, Do Nguyen Van, Guangwu Huang, Sofia M Haryana, Jaap M Middeldorp, Ingemar Ernberg, and Li-Fu Hu
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Medicine ,Science - Abstract
Increasing evidence demonstrated that inactivation of tumor suppressor genes (TSGs) by aberrant promoter methylation is an early event during carcinogenesis. Aiming at developing early diagnostic or prognostic tools for various tumors, we took an EBV-associated tumor, nasopharyngeal carcinoma (NPC), as a model and developed a powerful assay based on "multiplex methylation specific-PCR (MMSP)". The MMSP assay was designed to detect tumor-specific methylation status of several NPC-related genes and was capable of acquiring multiplex information simultaneously through a single PCR reaction with the tiny tumor DNA derived from the direct body fluid close to the primary tumor. In this study, we collected paired nasopharyngeal (NP) swabs and NPC biopsies from 49 NPC patients and twenty noncancerous controls. A panel of markers including two EBV, and two cellular TSG markers were applied in this NPC-specific-MMSP assay. We optimized the working condition of MMSP so that it provides information equal to that from the corresponding separate PCRs. The results showed that MMSP patterns of NPC swab were largely consistent with those of corresponding biopsies and significantly distinguished themselves from those of 20 noncancerous volunteers. Among the 69 samples (49 NPCs and 20 normal controls), the sensitivity of detecting NPC from NP swabs is 98%. The specificity is as high as 100%. In conclusion, being characterized by its noninvasiveness, high reproducibility and informativeness, MMSP assay is a reliable and potential diagnostic tool for NPC. It paves the way for the development of population screening and early diagnosis approaches for various tumor types.
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- 2012
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3. Upregulation of MiR-155 in nasopharyngeal carcinoma is partly driven by LMP1 and LMP2A and downregulates a negative prognostic marker JMJD1A.
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Zi-Ming Du, Li-Fu Hu, Hai-Yun Wang, Li-Xu Yan, Yi-Xin Zeng, Jian-Yong Shao, and Ingemar Ernberg
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Medicine ,Science - Abstract
The role of microRNA-155 (miR-155) has been associated with oncogenesis of several human tumors. However the expression pattern of miR-155 has not been investigated in nasopharyngeal carcinoma (NPC). The present study was to assess miR-155 expression pattern and its possible function in NPC, to identify its targets and evaluate their clinical applications in NPC. MiR-155 was found to be upregulated in two Epstein-Barr virus (EBV) negative NPC derived cell lines CNE1 and TW03, as well as in NPC clinical samples by quantitative Real-time PCR and in situ hybridization detection. EBV encoded LMP1 and LMP2A could further enhance the expression of miR-155 in NPC CNE1 and TW03 cells. JMJD1A and BACH1 were identified as putative targets of miR-155 in a bioinformatics screen. Overexpression of miR-155 downregulated a luciferase transcript fused to the 3'UTR of JMJD1A and BACH1. MiR-155 mimic could downregulate the expression of JMJD1A and BACH1, while miR-155 inhibitor could upregulate JMJD1A expression in NPC cell lines. Moreover, downregulation of JMJD1A was significantly correlated with N stage in TNM classification (p = 0.023), a lower five-year survival rate (p = 0.021), and a lower five-year disease-free survival rate (p = 0.049) of NPC patients. Taken together, up-regulation of miR-155 in NPC is partly driven by LMP1 and LMP2A, and results in downregulation of JMJD1A, which is associated with N stage and poor prognosis of NPC patients. The potential of miR-155 and JMJD1A as therapeutic targets in NPC should be further investigated.
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- 2011
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4. COX7A1 suppresses the viability of human non-small cell lung cancer cells via regulating autophagy
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Imran Nawaz, Pengfei Liu, Guangsuo Wang, Li-Fu Hu, Lei Zhao, Xin Chen, and Yetong Feng
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0301 basic medicine ,Autophagosome ,non‐small cell lung cancer ,Cancer Research ,autophagy ,Lung Neoplasms ,Cell Survival ,Gene Expression ,Apoptosis ,COX7A1 ,lcsh:RC254-282 ,Electron Transport Complex IV ,03 medical and health sciences ,0302 clinical medicine ,NOX2 ,Downregulation and upregulation ,Carcinoma, Non-Small-Cell Lung ,Cell Line, Tumor ,PGC‐1α ,Humans ,Radiology, Nuclear Medicine and imaging ,Viability assay ,RNA, Small Interfering ,cell viability ,Original Research ,Cancer Biology ,Chemistry ,Cell growth ,Autophagy ,Autophagosomes ,Transfection ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Cell biology ,030104 developmental biology ,Mitochondrial respiratory chain ,Oncology ,030220 oncology & carcinogenesis ,NADPH Oxidase 2 - Abstract
COX7A1 is a subunit of cytochrome c oxidase, and plays an important role in the super‐assembly that integrates peripherally into multi‐unit heteromeric complexes in the mitochondrial respiratory chain. In recent years, some researchers have identified that COX7A1 is implicated in human cancer cell metabolism and therapy. In this study, we mainly explored the effect of COX7A1 on the cell viability of lung cancer cells. COX7A1 overexpression was induced by vector transfection in NCI‐H838 cells. Cell proliferation, colony formation and cell apoptosis were evaluated in different groups. In addition, autophagy was analyzed by detecting the expression level of p62 and LC3, as well as the tandem mRFP‐GFP‐LC3 reporter assay respectively. Our results indicated that the overexpression of COX7A1 suppressed cell proliferation and colony formation ability, and promoted cell apoptosis in human non‐small cell lung cancer cells. Besides, the overexpression of COX7A1 blocked autophagic flux and resulted in the accumulation of autophagosome via downregulation of PGC‐1α and upregulation of NOX2. Further analysis showed that the effect of COX7A1 overexpression on cell viability was partly dependent of the inhibition of autophagy. Herein, we identified that COX7A1 holds a key position in regulating the development and progression of lung cancer by affecting autophagy. Although the crosstalk among COX7A1, PGC‐1α and NOX2 needs further investigation, our study provides a novel insight into the therapeutic action of COX7A1 against human non‐small cell lung cancer., COX7A1 could inhibit cell proliferation and colony formation ability, as well as promote cancer cell apoptosis. COX7A1 overexpression blocked the autophagic flux via downregulation of PGC‐1α and upregulation of NOX2.
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- 2019
5. 5‑Azacytidine treatment results in nuclear exclusion of DNA methyltransferase‑1, as well as reduced proliferation and invasion in human cytomegalovirus‑infected glioblastoma cells
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Mattia Russel Pantalone, Natalia Landázuri, Imran Nawaz, Belghis Davoudi, Tomas J. Ekström, Atosa Estekizadeh, Giuseppe Stragliotto, Afsar Rahbar, and Li-Fu Hu
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Adult ,DNA (Cytosine-5-)-Methyltransferase 1 ,Male ,0301 basic medicine ,Human cytomegalovirus ,Antimetabolites, Antineoplastic ,Cytoplasm ,Cancer Research ,Cell ,Cytomegalovirus ,Biology ,Virus Replication ,DNA methyltransferase ,03 medical and health sciences ,0302 clinical medicine ,Viral Envelope Proteins ,Cell Line, Tumor ,medicine ,Humans ,Aged ,Cell Proliferation ,Cell Nucleus ,Oncogene ,Brain Neoplasms ,Brain ,General Medicine ,DNA Methylation ,Middle Aged ,Cell cycle ,medicine.disease ,Treatment Outcome ,030104 developmental biology ,medicine.anatomical_structure ,Oncology ,Viral replication ,Cell culture ,030220 oncology & carcinogenesis ,DNA methylation ,Azacitidine ,Disease Progression ,Cancer research ,Female ,Glioblastoma - Abstract
Glioblastoma (GBM) is the most aggressive form of brain tumor in adults, with a devastating outcome. Emerging evidence shows that human cytomegalovirus (HCMV) proteins and nucleic acids are present in GBM tissues. DNA methylation is important for the initiation and progression of cancer and is an established host response against invading nucleic acids. The expression and localization of DNA methyltransferase 1 (DNMT‑1) was assessed, and the effects of DNA methylation inhibitor 5‑azacytidine (5AZA) were analyzed in the context of the viral replication, proliferation and invasion capacities of HCMV‑infected GBM U343MG cells. In addition, the expression of various HCMV proteins and DNMT‑1 was examined in GBM tissue specimens obtained from five patients. DNMT‑1 was localized in the nucleus of cells expressing HCMV‑immediate early, whereas in cells expressing HCMV‑glycoprotein gB (gB), extranuclear/cytoplasmic localization was observed. This was also observed in vitro in U343MG cells. In addition, DNMT‑1 was localized to the extranuclear/cytoplasmic space of cells lining blood vessel walls within the GBM tumors. Treatment of infected U343MG cells with 5AZA did not affect viral replication, but reduced cell invasion and proliferation (P=0.05 and P
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- 2019
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6. Integrin α9 gene promoter is hypermethylated and downregulated in nasopharyngeal carcinoma
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Tatiana V. Pavlova, Malin Almgren, Imran Nawaz, Ziming Du, Eugene R. Zabarovsky, Ingemar Ernberg, Vladimir I. Kashuba, Ilya Ignatyev, Khalid Moumad, and Li-Fu Hu
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Antimetabolites, Antineoplastic ,Integrins ,Blotting, Western ,Bisulfite sequencing ,nasopharyngeal carcinoma ,ITGA9 ,DNA methylation ,notl microarrays ,epigenetics ,Nasopharyngeal neoplasm ,Biology ,Decitabine ,Real-Time Polymerase Chain Reaction ,medicine.disease_cause ,Nasopharynx ,otorhinolaryngologic diseases ,medicine ,Humans ,Epigenetics ,Promoter Regions, Genetic ,Cells, Cultured ,Cell Proliferation ,Nasopharyngeal Carcinoma ,Carcinoma ,Klinisk medicin ,Nasopharyngeal Neoplasms ,Methylation ,medicine.disease ,Molecular biology ,Gene Expression Regulation, Neoplastic ,Wnt Proteins ,stomatognathic diseases ,Oncology ,Chromosome 3 ,Nasopharyngeal carcinoma ,notI microarrays ,Case-Control Studies ,Azacitidine ,Cancer research ,Clinical Medicine ,Carcinogenesis ,Integrin alpha Chains ,Research Paper - Abstract
Epigenetic silencing of tumor suppressor genes (TSGs) by promoter methylation can be an early event in the multi-step process of carcinogenesis. Human chromosome 3 contains clusters of TSGs involved in many cancer types including nasopharyngeal carcinoma (NPC), the most common cancer in Southern China. Among ten candidate TSGs identified in chromosome 3 using NotI microarray, ITGA9 and WNT7A could be validated. 5-aza-2 deoxycytidine treatment restored the expression of ITGA9 and WNT7A in two NPC cell lines. Immunostaining showed strong expression of these genes in the membrane and cytoplasm of adjacent control nasopharyngeal epithelium cells, while they were weakly expressed in NPC tumor cells. The ITGA9 promoter showed marked differentially methylation between tumor and control tissue, whereas no differentially methylation could be detected for the WNT7A promoter. The expression level of ITGA9 in NPC tumors was downregulated 4.9-fold, compared to the expression in control. ITGA9 methylation was detected by methylation specific PCR (MSP) in 56% of EBV positive NPC-cases with 100% specificity. Taken together, this suggests that ITGA9 might be a TSG in NPC that is involved in tumor cell biology. The possibility of using ITGA9 methylation as a marker for early detection of NPC should further be explored. Funding Agencies|Cancerfonden; Cancerforeningen in Stockholm; National Natural Science Foundation of China [81202135]; Project for the Development of University of Balochistan, Quetta, Pakistan
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- 2015
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7. Genomic DNA Hypomethylation by Histone Deacetylase Inhibition Implicates DNMT1 Nuclear Dynamics
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Mohsen Karimi Arzenani, Susanne J. H. Vijverberg, Lorenz Kallenbach, Zahidul Khan, Tomas J. Ekström, Vladana Vukojević, Syed Sadique, Yu Ming, Zhe Zhang, Atosa Esteki Zade, Li-Fu Hu, Pulmonology, APH - Personalized Medicine, and AII - Inflammatory diseases
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Cyclin-Dependent Kinase Inhibitor p21 ,DNA (Cytosine-5-)-Methyltransferase 1 ,Biology ,Hydroxamic Acids ,DNA methyltransferase ,Histone Deacetylases ,Cell Line, Tumor ,medicine ,Humans ,Protein Isoforms ,DNA (Cytosine-5-)-Methyltransferases ,Cancer epigenetics ,Molecular Biology ,Cell Nucleus ,Articles ,Cell Biology ,DNA Methylation ,Chromatin ,Histone Deacetylase Inhibitors ,Trichostatin A ,Histone methyltransferase ,DNA methylation ,Azacitidine ,DNMT1 ,Cancer research ,Histone deacetylase ,medicine.drug - Abstract
Histone deacetylase inhibitors (HDACi) are promising antitumor drugs acting through reactivation of silenced tumor suppressor genes. Several HDACi are currently in clinical trials both for hematological and solid tissue malignancies. Cooperative action of HDACi and DNA methylation inhibitors (DNMTi) has been reported, making combined treatment an attractive choice for cancer therapy. There is some evidence that synergistic effects of HDACi and DNMTi are achieved by their action on common targets, including DNA methyltransferase 1 (DNMT1). To further analyze this interaction, we investigated the effect of the HDACi trichostatin A on global and gene-specific DNA methylation and applied methods with single molecule sensitivity, confocal laser scanning microscopy with avalanche photodiode detectors (APD imaging) and fluorescence correlation spectroscopy (FCS), to study its effect on the nuclear dynamics of DNMT1 in live cells. Our data show that trichostatin A treatment reduces global DNA methylation and the DNMT1 protein level and alters DNMT1 nuclear dynamics and interactions with chromatin. The mechanisms underlying these effects are apparently distinct from the mechanisms of action of the DNMT inhibitor 5-azacytidine. Our study sheds light on the molecular mechanisms underlying the synergistic action of HDACi and DNMTi and may also help to define improved policies for cancer treatment.
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- 2011
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8. A single nucleotide polymorphism in the matrix metalloproteinase 2 promoter is closely associated with high risk of nasopharyngeal carcinoma in Cantonese from southern China
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Ma Yan Huang, Ingemar Ernberg, Xiaoping Miao, Li-Fu Hu, Yun Cao, Dongxin Lin, Ling Deng, Jian Jun Hao, Jian Yong Shao, Yi Xin Zeng, and Xiao Man Liang
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Adult ,Male ,China ,MMP2 ,Genotype ,Population ,Matrix metalloproteinase 2 gene ,Single-nucleotide polymorphism ,Real-Time Polymerase Chain Reaction ,Polymorphism, Single Nucleotide ,polymorphism ,Metastasis ,Asian People ,Risk Factors ,medicine ,Humans ,Genetic Predisposition to Disease ,Promoter Regions, Genetic ,Lung cancer ,education ,Neoplasm Staging ,Genetics ,education.field_of_study ,Nasopharyngeal Carcinoma ,smoker ,business.industry ,Carcinoma ,Smoking ,Nasopharyngeal Neoplasms ,Promoter ,Middle Aged ,medicine.disease ,Oncology ,Nasopharyngeal carcinoma ,Case-Control Studies ,Cancer research ,Matrix Metalloproteinase 2 ,Female ,Original Article ,epidemiology ,business - Abstract
To date, 20 human matrix metalloproteinases (MMPs) have been identified. MMPs degrade a range of extracellular matrix proteins and are implicated in connective tissue destruction and remodeling associated with cancer invasion, metastasis, and cartilage destruction in arthritis[1]–[3]. Therefore, MMPs were initially believed to be primarily involved in tumor invasion, blood vessel penetration, and metastasis through breakdown of physical barriers[4]–[6]. Recent work has suggested that, in addition to the historically considered features of promoting invasion and metastasis, MMPs may also be important for multiple steps of cancer development[7],[8]. Naturally occurring genetic polymorphisms have been shown to have allele-specific effects on transcription of the MMP gene promoters and to be associated with susceptibility to cancers[9]–[14]. The MMP2 gene, which maps to 16q13, is 17-kb long and has 13 exons varying in size from 110 to 901 bp and 12 introns ranging in size from 175 to 4350 bp. MMP-2 is secreted as a pro-enzyme whose cleavage leads to the production of a soluble active form. A naturally occurring sequence variation in the human MMP2 gene promoter was reported[15], and this single nucleotide polymorphism (SNP) is a C/T transition at –1306 that disrupts an Sp1-type promoter site (CCACC box) and displays a strikingly lower promoter activity than does the T allele. The CC genotype in the MMP2 promoter has been reported to associate with the development of gastric cardia adenocarcinoma[10], lung cancer[11], esophageal cancer[12], and breast cancer[16],[17]. Nasopharyngeal carcinoma (NPC) is one of the most common head and neck cancers in southern China. Epstein-Barr virus infection, chromosomal alterations, genetic and environmental factors have been reported to be involved in NPC etiology[18]–[20]. The clinically significant characteristics of NPC include early metastasis to lymph nodes, local invasiveness, and frequent local recurrence after treatment[21]. We recently reported in a molecular epidemiological study that the MMP2 –1306CC genotype is associated with a several-fold increased risk of lung cancer alone or through interaction with smoking exposure [11]. In this retrospective case-control study, we examined the contribution of the –1306C/T polymorphism in the MMP2 gene on NPC risk in a large molecular epidemiological study of a southern Chinese population.
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- 2011
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9. A single nucleotide polymorphism in the Epstein-Barr virus genome is strongly associated with a high risk of nasopharyngeal carcinoma
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Bing Luo, Qian Cui, Wei Hua Jia, Miao Xu, Su Mei Cao, Da Jiang Li, Wen Sheng Liu, Yun Miao Guo, Qian Tao, Jin Xin Bei, Fu Tuo Feng, Li Zhen Chen, Qi Sheng Feng, Li-Fu Hu, Octavia Ramayanti, Jaap M. Middeldorp, Yi Xin Zeng, Pathology, and CCA - Oncogenesis
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Adult ,Male ,Oncology ,China ,Epstein-Barr Virus Infections ,Herpesvirus 4, Human ,medicine.medical_specialty ,Population ,Nasopharyngeal neoplasm ,Pilot Projects ,Single-nucleotide polymorphism ,Genome, Viral ,Protein degradation ,Polymorphism, Single Nucleotide ,Risk Assessment ,Association ,Viral Proteins ,Internal medicine ,Nasopharyngeal carcinoma ,Tumor Cells, Cultured ,medicine ,Epstein-Barr virus ,Humans ,SNP ,education ,Genetic Association Studies ,Aged ,education.field_of_study ,business.industry ,Incidence ,Carcinoma ,Case-control study ,Nasopharyngeal Neoplasms ,Odds ratio ,Middle Aged ,medicine.disease ,Virology ,Neoplasm Proteins ,RPMS1 ,Case-Control Studies ,Original Article ,Female ,business - Abstract
BACKGROUND: Epstein-Barr virus (EBV) commonly infects the general population and has been associated with nasopharyngeal carcinoma (NPC), which has a high incidence in certain regions. This study aimed to address how EBV variations contribute to the risk of NPC.METHODS: Using logistic regression analysis and based on the sequence variations at EBV-encoded RPMS1, a multi-stage association study was conducted to identify EBV variations associated with NPC risk. A protein degradation assay was performed to characterize the functional relevance of the RPMS1 variations.RESULTS: Based on EBV-encoded RPMS1 variations, a single nucleotide polymorphism (SNP) in the EBV genome (locus 155391: G>A, named G155391A) was associated with NPC in 157 cases and 319 healthy controls from an NPC endemic region in South China [P < 0.001, odds ratio (OR) = 4.47, 95% confidence interval (CI) 2.71-7.37]. The results were further validated in three independent cohorts from the NPC endemic region (P < 0.001, OR = 5.20, 95% CI 3.18-8.50 in 168 cases vs. 241 controls, and P < 0.001, OR = 5.27, 95% CI 4.06-6.85 in 726 cases vs. 880 controls) and a non-endemic region (P < 0.001, OR = 7.52, 95% CI 3.69-15.32 in 58 cases vs. 612 controls). The combined analysis in 1109 cases and 2052 controls revealed that the SNP G155391A was strongly associated with NPC (P(combined) < 0.001, OR = 5.27, 95% CI 4.31-6.44). Moreover, the frequency of the SNP G155391A was associated with NPC incidence but was not associated with the incidences of other EBV-related malignancies. Furthermore, the protein degradation assay showed that this SNP decreased the degradation of the oncogenic RPMS1 protein.CONCLUSIONS: Our study identified an EBV variation specifically and significantly associated with a high risk of NPC. These findings provide insights into the pathogenesis of NPC and strategies for prevention.
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- 2015
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10. Inactivation ofRASSF2A by promoter methylation correlates with lymph node metastasis in nasopharyngeal carcinoma
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Zhe Zhang, Do Nguyen Van, Li-Fu Hu, Di Sun, Guangwu Huang, and Anzhou Tang
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Male ,Cancer Research ,Tumor suppressor gene ,Nasopharyngeal neoplasm ,Adenocarcinoma ,Biology ,Polymerase Chain Reaction ,Metastasis ,Colony-Forming Units Assay ,Nasopharynx ,Tumor Cells, Cultured ,medicine ,Humans ,Promoter Regions, Genetic ,Cell Proliferation ,Tumor Suppressor Proteins ,Proteins ,Nasopharyngeal Neoplasms ,DNA, Neoplasm ,Methylation ,DNA Methylation ,Middle Aged ,medicine.disease ,Candidate Tumor Suppressor Gene ,Gene Expression Regulation, Neoplastic ,Oncology ,Nasopharyngeal carcinoma ,Case-Control Studies ,Lymphatic Metastasis ,DNA methylation ,Azacitidine ,Carcinoma, Squamous Cell ,Cancer research ,Female ,Ectopic expression ,Lymph Nodes - Abstract
RASSF2 can bind directly to K-Ras and function as a negative effector of Ras protein. RASSF2A is the only isoform of RASSF2 that contains CpG islands in its promoter and it has been reported to be inactivated by its promoter methylation in several human cancers. In the present study, we investigated the correlation of RASSF2A expression with its promoter methylation in nasopharyngeal carcinoma (NPC). Expression of RASSF2A was down-regulated in 80% (4/5) of NPC cell lines. Decreased RASSF2A expression was also observed in NPC primary tumors compared with normal nasopharyngeal epithelia. Promoter methylation of RASSF2A could be detected in all the RASSF2A-silenced cell lines (4/5) of the NPC cell lines and 50.9% (27/53) of primary tumors, but not in any of the normal epithelia. RASSF2A-methylated cases showed a significantly lower level of RASSF2A expression than unmethylated cases. Loss of RASSF2A expression can be greatly restored by the methyltransferase inhibitor 5-aza-dC in NPC cell lines. In addition, patients with methylated RASSF2A presented a higher frequency of lymph node metastasis (p < 0.05). Ectopic expression of RASSF2A in RASSF2A-silenced and -methylated NPC cell line CNE2 shows that RASSF2A could inhibit cell cycle progression, colony formation and cell migration, which provided further evidence that RASSF2A is a candidate tumor suppressor gene. In conclusion, RASSF2A, a candidate tumor suppressor gene (TSG), is frequently inactivated by its promoter methylation and this aberrant methylation correlates with lymph node metastasis in NPC.
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- 2006
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11. Development of a multiplex methylation specific PCR suitable for (early) detection of non-small cell lung cancer
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Qinghua Zhou, Li-Fu Hu, Yaguang Fan, Xiaoming Qiu, Heng Wu, Imran Nawaz, Ingemar Ernberg, and Yang Li
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Adult ,Male ,Cancer Research ,Lung Neoplasms ,Population ,Bisulfite sequencing ,Biology ,Carcinoma, Non-Small-Cell Lung ,Cell Line, Tumor ,medicine ,Humans ,Multiplex ,Genes, Tumor Suppressor ,education ,Lung cancer ,Molecular Biology ,Early Detection of Cancer ,Aged ,Aged, 80 and over ,education.field_of_study ,Cancer ,Methylation ,DNA Methylation ,Middle Aged ,medicine.disease ,Molecular biology ,CpG site ,DNA methylation ,Cancer research ,CpG Islands ,Transcriptome ,Multiplex Polymerase Chain Reaction ,Research Paper - Abstract
Lung cancer is a worldwide health problem and a leading cause of cancer-related deaths. Silencing of potential tumor suppressor genes (TSGs) by aberrant promoter methylation is an early event in the initiation and development of cancer. Thus, methylated cancer type-specific TSGs in DNA can serve as useful biomarkers for early cancer detection. We have now developed a "Multiplex Methylation Specific PCR" (MMSP) assay for analysis of the methylation status of multiple potential TSGs by a single PCR reaction. This method will be useful for early diagnosis and treatment outcome studies of non-small cell lung cancer (NSCLC). Genome-wide CpG methylation and expression microarrays were performed on lung cancer tissues and matched distant non-cancerous tissues from three NSCLC patients from China. Thirty-eight potential TSGs were selected and analyzed by methylation PCR on bisulfite treated DNA. On the basis of sensitivity and specificity, six marker genes, HOXA9, TBX5, PITX2, CALCA, RASSF1A, and DLEC1, were selected to establish the MMSP assay. This assay was then used to analyze lung cancer tissues and matched distant non-cancerous tissues from 70 patients with NSCLC, as well as 24 patients with benign pulmonary lesion as controls. The sensitivity of the assay was 99% (69/70). HOXA9 and TBX5 were the 2 most sensitive marker genes: 87% (61/70) and 84% (59/70), respectively. RASSF1A and DLEC1 showed the highest specificity at 99% (69/70). Using the criterion of identifying at least any two methylated marker genes, 61/70 cancer samples were positive, corresponding to a sensitivity of 87% and a specificity of 94%. Early stage I or II NSCLC could even be detected with a 100% specificity and 86% sensitivity. In conclusion, MMSP has the potential to be developed into a population-based screening tool and can be useful for early diagnosis of NSCLC. It might also be suitable for monitoring treatment outcome and recurrence.
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- 2014
12. Coupled transcription of Epstein--Barr virus latent membrane protein (LMP)-1 and LMP-2B genes in nasopharyngeal carcinomas
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Ingemar Ernberg, Gösta Winberg, Fu Chen, Li-Fu Hu, and George Klein
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Gene Expression Regulation, Viral ,Herpesvirus 4, Human ,Transcription, Genetic ,endocrine system diseases ,viruses ,Molecular Sequence Data ,Nasopharyngeal neoplasm ,Biology ,medicine.disease_cause ,Virus ,Viral Matrix Proteins ,Mice ,hemic and lymphatic diseases ,Virology ,Complementary DNA ,otorhinolaryngologic diseases ,medicine ,Animals ,Humans ,Antigens, Viral ,Gene ,Mice, Inbred BALB C ,Viral matrix protein ,Base Sequence ,Nasopharyngeal Neoplasms ,Promoter ,medicine.disease ,Epstein–Barr virus ,Molecular biology ,DNA-Binding Proteins ,stomatognathic diseases ,Epstein-Barr Virus Nuclear Antigens ,Nasopharyngeal carcinoma - Abstract
The presence of transcripts of the Epstein-Barr virus genes for Epstein-Barr nuclear antigen (EBNA)-1 and EBNA-2 and for latent membrane protein (LMP)-1, LMP-2A and LMP-2B was investigated in 24 nasopharyngeal carcinoma (NPC) biopsies of Chinese origin and two NPC-derived solid tumour lines, CAO and C15, of Chinese and north African origin respectively, propagated by serial transplantation in nude mice. Transcripts were detected by PCR amplification of cDNA. EBNA-1 transcripts were present in all biopsies tested and originated exclusively from the FQ promoter while the C and W promoters were inactive. Using nested primers, LMP-1 and LMP-2B RNAs were found to be co-ordinately expressed in 22 of the 24 biopsies, while the two remaining tumours were negative for both. LMP-2A transcription was detected in 17 of the 22 LMP-1-positive biopsies. In summary, the following patterns of viral gene expression were observed in the tumour biopsies: (i) LMP-1-LMP-2B and LMP-2A positive (17 biopsies); (ii) LMP-1-LMP-2B positive but LMP-2A negative (five biopsies); (iii) no viral gene other than EBNA-1 expressed (two biopsies).
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- 1995
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13. Upregulation of MiR-155 in nasopharyngeal carcinoma is partly driven by LMP1 and LMP2A and downregulates a negative prognostic marker JMJD1A
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Jian Yong Shao, Ziming Du, Ingemar Ernberg, Li-Fu Hu, Li Xu Yan, Hai Yun Wang, and Yi Xin Zeng
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Male ,Jumonji Domain-Containing Histone Demethylases ,lcsh:Medicine ,Kaplan-Meier Estimate ,medicine.disease_cause ,lcsh:Science ,Oligonucleotide Array Sequence Analysis ,Multidisciplinary ,Nasopharyngeal Carcinoma ,Middle Aged ,Prognosis ,Fanconi Anemia Complementation Group Proteins ,Up-Regulation ,Gene Expression Regulation, Neoplastic ,Basic-Leucine Zipper Transcription Factors ,Medicine ,Infectious diseases ,Female ,Research Article ,Adult ,Adolescent ,Molecular Sequence Data ,Nasopharyngeal neoplasm ,Down-Regulation ,Viral diseases ,Biology ,miR-155 ,Viral Matrix Proteins ,Young Adult ,Downregulation and upregulation ,Cell Line, Tumor ,microRNA ,Carcinoma ,medicine ,Biomarkers, Tumor ,otorhinolaryngologic diseases ,Humans ,Aged ,Base Sequence ,lcsh:R ,Nasopharyngeal Neoplasms ,medicine.disease ,Epstein–Barr virus ,Molecular biology ,MicroRNAs ,stomatognathic diseases ,Nasopharyngeal carcinoma ,Otorhinolaryngology ,Head and Neck Cancers ,Epstein-Barr virus infectious mononucleosis ,lcsh:Q ,Carcinogenesis - Abstract
The role of microRNA-155 (miR-155) has been associated with oncogenesis of several human tumors. However the expression pattern of miR-155 has not been investigated in nasopharyngeal carcinoma (NPC). The present study was to assess miR-155 expression pattern and its possible function in NPC, to identify its targets and evaluate their clinical applications in NPC. MiR-155 was found to be upregulated in two Epstein-Barr virus (EBV) negative NPC derived cell lines CNE1 and TW03, as well as in NPC clinical samples by quantitative Real-time PCR and in situ hybridization detection. EBV encoded LMP1 and LMP2A could further enhance the expression of miR-155 in NPC CNE1 and TW03 cells. JMJD1A and BACH1 were identified as putative targets of miR-155 in a bioinformatics screen. Overexpression of miR-155 downregulated a luciferase transcript fused to the 3'UTR of JMJD1A and BACH1. MiR-155 mimic could downregulate the expression of JMJD1A and BACH1, while miR-155 inhibitor could upregulate JMJD1A expression in NPC cell lines. Moreover, downregulation of JMJD1A was significantly correlated with N stage in TNM classification (p = 0.023), a lower five-year survival rate (p = 0.021), and a lower five-year disease-free survival rate (p = 0.049) of NPC patients. Taken together, up-regulation of miR-155 in NPC is partly driven by LMP1 and LMP2A, and results in downregulation of JMJD1A, which is associated with N stage and poor prognosis of NPC patients. The potential of miR-155 and JMJD1A as therapeutic targets in NPC should be further investigated.
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- 2011
14. A genome-wide scan suggests a susceptibility locus on 5p 13 for nasopharyngeal carcinoma
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Qian-Hui Qiu, Bing He, Kristinn P. Magnusson, Sheng-Miao Fu, Ingemar Ernberg, Li-Fu Hu, Annika Lindblom, and Di Sun
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Genetics ,Male ,Genetic Linkage ,Genome, Human ,Haplotype ,Locus (genetics) ,Nasopharyngeal Neoplasms ,Biology ,Southeast asian ,medicine.disease ,Pedigree ,Nasopharyngeal carcinoma ,Gene mapping ,Genetic linkage ,otorhinolaryngologic diseases ,medicine ,Microsatellite ,Chromosomes, Human, Pair 5 ,Humans ,Female ,Genetic Predisposition to Disease ,Genotyping ,Genetics (clinical) ,Microsatellite Repeats - Abstract
Nasopharyngeal carcinoma (NPC) occurs with high frequency in Southeast Asian populations. The high prevalence and familial clustering of NPC in these populations suggest that genetic factors may contribute to the increased cancer risk by affecting susceptibility. The aim of the present study was to map chromosomal loci linked to susceptibility genes predisposing for NPC. We carried out a genome-wide scan by multipoint affected-only allele-sharing methods in 15 Chinese NPC families with two to six affected members per family. The families were from the Guangdong province in the south of China, where the highest risk of NPC is documented. These samples were genotyped using 800 microsatellite markers covering all autosomal chromosomes with an average marker distance of 5 cM. Using multipoint linkage analysis, four loci (2q, 5p, 12p, and 18p) showed LOD scores above 1.5. After genotyping additional markers in these four regions, only one locus on 5p13 showed an increased LOD of 2.1. In further haplotype analysis, affected individuals in six families shared three marker haplotypes between D5S674 and D5S418. In conclusion, a region on 5p13 may harbor a susceptibility gene for NPC.
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- 2008
15. Comparison of Epstein-Barr virus DNA level in plasma, peripheral blood cell and tumor tissue in nasopharyngeal carcinoma
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Jian-Yong, Shao, Yu, Zhang, Yu-Hong, Li, Hong-Yi, Gao, Hui-Xia, Feng, Qiu-Liang, Wu, Nian-Ji, Cui, Gang, Cheng, Bin, Hu, Li-Fu, Hu, Ingemar, Ernberg, and Yi-Xin, Zeng
- Subjects
Male ,Epstein-Barr Virus Infections ,Herpesvirus 4, Human ,DNA, Viral ,Humans ,RNA, Viral ,Female ,Nasopharyngeal Neoplasms ,Polymerase Chain Reaction ,Sensitivity and Specificity ,In Situ Hybridization ,Neoplasm Staging - Abstract
The plasma Epstein-Barr virus DNA (EBV-DNA) level has been found to be an indicator for staging and prognosis of nasopharyngeal carcinoma (NPC).The EBV-DNA level in plasma, peripheral blood cells (PBC) and neoplastic tissues was quantitatively analyzed and potential associations with clinical parameters of NPC were investigated.The plasma EBV-DNA detecting rate and level in NPC (92%, 82,500 copies/ml) was significantly higher than that in NPC after treatment (19%, 0 copy/ml) and in controls (12%, 0 copy/ml) (p0.001); while there was no significance of the PBC EBV-DNA detecting rate and EBV-DNA load in NPC before (24%, 0 copy/actin) and after treatment (14%, 0 copy/actin), and in controls (16%, 0 copy/actin). The plasma EBV-DNA level was not correlated to the PBC EBV-DNA load in NPC before (p = 0.92) and after treatment (p = 0.267), and in controls (p = 0.735). The EBV-DNA level in NPC tumor (27.8 copies/actin) was significantly higher than that in nasopharyngitis and was positively correlated to the ratio of EBER1-positive cells on the NPC section (p = 0.001). The plasma EBV-DNA level was significantly increased in TNM stages I, II, III and IV NPC, whereas there was no significant difference of PBC EBV-DNA load in different stage NPC.Our results indicate that plasma EBV-DNA is a more sensitive and reliable biomarker than PBC EBV-DNA for diagnosis, staging and therapeutic effect evaluation at a molecular level in NPC clinical practice. Plasma EBV-DNA may derive from the cancer cells and PBC EBV-DNA from circulating mononuclear cells in NPC patients.
- Published
- 2005
16. Epstein-Barr virus LMP1 status in relation to apoptosis, p53 expression and leucocyte infiltration in nasopharyngeal carcinoma
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Jian-Yong, Shao, Ingemar, Ernberg, Peter, Biberfeld, Thomas, Heiden, Yi-Xin, Zeng, and Li-Fu, Hu
- Subjects
Adult ,Male ,Adolescent ,T-Lymphocytes ,Apoptosis ,Nasopharyngeal Neoplasms ,Middle Aged ,Immunophenotyping ,Viral Matrix Proteins ,Ki-67 Antigen ,Lymphocytes, Tumor-Infiltrating ,Matrix Metalloproteinase 9 ,Humans ,RNA, Viral ,Female ,Tumor Suppressor Protein p53 ,In Situ Hybridization ,Aged - Abstract
Nasopharyngeal carcinoma (NPC) is consistently associated with Epstein-Barr virus (EBV) infection. EBV-encoded LMP1, expressed in most of NPC, has been suggested to have an important role in the pathogenesis and development of NPC and its expression correlates with poor prognosis.Eighty-seven NPC biopsies were analyzed by immunohistochemistry for expression of markers of cell proliferation, apoptosis, infiltrating T lymphocytes and macrophages in relation to the LMP1 status.Our findings indicate that the p53 accumulation in NPC was significantly correlated to LMP1 and MMP9 overexpression in NPC cells. The frequency of apoptotic cells in NPC, as analyzed by TUNEL labeling, correlated to Fas-L and caspase-3 expression, and inversely to LMP1, p53 and MMP 9 expression. CD8+ T cell infiltration was predominately seen in nests of cancer cells with a high level of EBV-LMP1 expression, but these CD8+ T cells showed low expression of CD25 and TIA-1, indicating that they were not activated.Our observation suggests that the heavy infiltration by lymphocytes in LMP1-positive NPC tumors does not appear to counteract tumor growth by cytoxicity as indicated by the low apoptotic index. Thus, LMP1 seems to enhance survival- and proliferation-related signals in NPC. In analogy with other tumors, both the infiltrating T cells and the accumulated p53 may be inactive.
- Published
- 2004
17. Comparison of plasma Epstein-Barr virus (EBV) DNA levels and serum EBV immunoglobulin A/virus capsid antigen antibody titers in patients with nasopharyngeal carcinoma
- Author
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Gang Cheng, Qiu-Liang Wu, Yu Hong Li, Hong-Yi Gao, Nian-Ji Cui, Yi Xin Zeng, Jian Yong Shao, Li Zhang, Li-Fu Hu, and Ingemar Ernberg
- Subjects
Immunoglobulin A ,Cancer Research ,Epstein-Barr Virus Infections ,Herpesvirus 4, Human ,Enzyme-Linked Immunosorbent Assay ,medicine.disease_cause ,Antibodies, Viral ,otorhinolaryngologic diseases ,Carcinoma ,medicine ,Humans ,Neoplasm Metastasis ,Antigens, Viral ,Neoplasm Staging ,biology ,business.industry ,Reverse Transcriptase Polymerase Chain Reaction ,Antibody titer ,Nasopharyngeal Neoplasms ,medicine.disease ,Prognosis ,Epstein–Barr virus ,stomatognathic diseases ,Titer ,Tumor Virus Infections ,Real-time polymerase chain reaction ,Oncology ,Nasopharyngeal carcinoma ,Immunology ,DNA, Viral ,biology.protein ,Capsid Proteins ,Antibody ,Neoplasm Recurrence, Local ,business ,Biomarkers - Abstract
BACKGROUND Serologic measurement of antibodies to Epstein–Barr virus (EBV) immunoglobulin A/viral capsid antigen (IgA/VCA) and early antigen (IgA/EA) has been used widely to screen for nasopharyngeal carcinoma (NPC) in China. Recently, it was found that plasma EBV DNA concentration is an indicator for the staging and prognosis of patients with NPC. To determine whether there is a correlation between plasma EBV DNA levels and serum levels of IgA/VCA, the authors measured both in patients with NPC and in a control group. METHODS Real-time polymerase chain reaction was used for quantitative analysis of plasma EBV DNA concentration, and enzyme-linked immunoadsorbent assay was used to measure EBV VCA/IgA in patients with primary NPC (n = 120 patients), locally recurrent NPC (n = 8 patients), and distant metastatic NPC (n = 21 patients) among 76 patients with NPC after the completion of radiotherapy, in 60 patients with NPC in clinical remission, in 38 patients with non-NPC tumors, and in 47 control individuals. RESULTS The median plasma EBV DNA levels were 6200 copies/mL, 9200 copies/mL, and 2050 copies/mL in patients with primary, locally recurrent, and distant metastatic NPC, respectively, but declined to 0 copies/mL in patients with clinically remissive NPC, in patients who completed radiotherapy, in patients with non-NPC tumors, and in the control group. In contrast, EBV VCA/IgA titers and detection rates remained high in all NPC groups. Plasma EBV DNA levels were significantly higher in patients who had serum VCA/IgA titers ≥ 1:640 (median, 83,450 copies/mL) compared with the levels in patients who had titers ≤ 1:320 (median, 17,200 copies/mL). Patients with NPC who had advanced TNM stage (Stages III and IV; median, 8530 copies/mL) and T classification (T3 and T4 tumors; median, 8530 copies/mL) had significantly higher plasma EBV DNA levels compared with patients who had early TNM stage (Stages I and II; median, 930 copies/mL) and T classification (T1 and T2 tumors; median, 3700 copies). Patients who had advanced TNM stage NPC had significantly higher mean VCA/IgA titers (1:424) compared with patients who had early TNM stage NPC (1:246), but there was no correlation between IgA/VCA titer and T or N classification of NPC. CONCLUSIONS The results suggest that plasma EBV DNA detection is a more sensitive and specific marker than the serum IgA/VCA titer for the diagnosis and monitoring of patients with NPC. These findings provide convincing evidence for the use of plasma EBV DNA measurements for the early diagnosis and staging of NPC as well as for monitoring recurrence and metastasis of this tumor. Cancer 2004. © 2004 American Cancer Society.
- Published
- 2004
18. Characterization of a new SNP c767A/T (Arg222Trp) in the candidate TSG FUS2 on human chromosome 3p21.3: prevalence in Asian populations and analysis of association with nasopharyngeal cancer
- Author
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Xiang Guo, Chao Nan Qian, Eric J. Stanbridge, Michael Dean, Sharad Godbole, Bin Tean Teh, Michael Voevoda, Eugene R. Zabarovsky, Vladimir I. Kashuba, Li-Fu Hu, Michele Moody, Fuh Mei Duh, Michael I. Lerman, Maria Li Lung, and Matthew J. Fivash
- Subjects
Asia ,Endemic Diseases ,Population ,Population genetics ,Single-nucleotide polymorphism ,Biology ,Polymorphism, Single Nucleotide ,Gene Frequency ,Acetyltransferases ,Prevalence ,Humans ,SNP ,Genes, Tumor Suppressor ,education ,Molecular Biology ,Allele frequency ,Genetic association ,Genetics ,education.field_of_study ,Nasopharyngeal Neoplasms ,Cell Biology ,Molecular biology ,Candidate Tumor Suppressor Gene ,Protein Structure, Tertiary ,Chromosomes, Human, Pair 3 ,Gene polymorphism - Abstract
The FUS2 gene, encoding a novel cytoplasmic acetyltransferase, resides in the tumor suppressor gene region on human chromosome 3p21.3 and is considered a promising candidate tumor suppressor gene. We have identified a new single nucleotide polymorphism (SNP), c767A/T, in the coding region of the gene. The polymorphism leads to a non-conservative amino acid change (R222W) located between the acetyltransferase (GNAT) and the proline-rich domains of the protein. We have analyzed 254 subjects included in 14 sub-populations. The occurrence of the SNP varies with the ethnicity of the population, suggesting that this SNP could be a valuable biomarker for population genetics. It is most prevalent in various Asian populations (T allele frequency>0.54), followed by the Canadian polar Inuit (T allele frequency=0.3), African American (T allele frequency=0.17), and Caucasian population (T allele frequency=0.1). Since nasopharyngeal carcinoma (NPC) is frequent in Southern China, Taiwan, Borneo and polar Canada, we further tested for the possible association of the FUS2 SNP with this form of endemic cancer. Our analysis, albeit limited, suggests no likely association between NPC and the FUS2 gene polymorphism. Further large-scale case-control studies are necessary and warranted to prove the strength of this contention.
- Published
- 2004
19. High frequency loss of heterozygosity on the long arms of chromosomes 13 and 14 in nasopharyngeal carcinoma in Southern China
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Jianyong, Shao, Yuhong, Li, Qiuliang, Wu, Xiaoman, Liang, Xingjuan, Yu, Lixi, Huang, Jinghui, Hou, Xiaoming, Huang, Ingemar, Ernberg, Li-Fu, Hu, and Yixin, Zeng
- Subjects
Adult ,Chromosomes, Human, Pair 14 ,Male ,Chromosomes, Human, Pair 13 ,Statistics as Topic ,Loss of Heterozygosity ,Nasopharyngeal Neoplasms ,DNA, Neoplasm ,Middle Aged ,Gene Frequency ,Humans ,Female ,Aged ,Microsatellite Repeats - Abstract
To investigate the loss of heterozygosity (LOH) on chromosomal arms 13q and 14q in nasopharyngeal carcinoma (NPC) using 21 microsatellite polymorphic markers and to study whether there is a correlation between LOH and clinicopathologic parameters and/or Epstein-Barr virus (EBV) infection in NPC.Sixty cases of NPC were studied using polymerase chain reaction based microsatellite analysis with genescan and genotyping techniques.LOH was detected on 13q in 78% of NPC tumors, high frequency LOH loci (more than 30%) clustered to 13q12.3-q14.3 and 13q32. On chromosome 14q, LOH was detected in 80% of NPC tumors; high frequency LOH loci clustered to 14q11-q13, 14q21-q24 and 14q32. High frequency LOH at 13q31-q32 correlated with a lower level of EBV infection; LOH on chromosome 14q was closely associated with poor differentiation of NPC tumor cells.Our results suggest that in NPC, LOH on chromosome 13q and 14q are common genetic events, and putative tumor suppressor genes (TSG) residing in these regions may be involved in tumorigenesis.
- Published
- 2002
20. Loss of heterozygosity on chromosome arm 3p in nasopharyngeal carcinoma
- Author
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George Klein, Li-Fu Hu, Yan Luo, Eugene R. Zabarovsky, Andrei Alimov, Gudny Eiriksdottir, Ingemar Ernberg, Tatyana Lebedeva, Fu Chen, Sigurdur Ingvarsson, and Irina Kholodniouk
- Subjects
Adult ,Male ,Cancer Research ,Lymphocyte ,Nasopharyngeal neoplasm ,Biology ,Polymerase Chain Reaction ,law.invention ,Loss of heterozygosity ,law ,Tumor stage ,Genetics ,medicine ,Polymorphic Microsatellite Marker ,Humans ,Neoplasm Metastasis ,Polymerase chain reaction ,Aged ,Nasopharyngeal Neoplasms ,DNA, Neoplasm ,Middle Aged ,medicine.disease ,Molecular biology ,medicine.anatomical_structure ,Nasopharyngeal carcinoma ,Chromosome Arm ,Female ,Chromosomes, Human, Pair 3 ,Chromosome Deletion ,Gene Deletion ,Microsatellite Repeats - Abstract
We have examined 17 primary undifferentiated nasopharyngeal carcinoma biopsies for allelic loss on 3p, comparing the findings in tumors with those in normal lymphocyte DNA from the same patients. Ten polymorphic microsatellite markers were used between 3p13 and 3p26. Allelic loss was observed in 12 samples (70%). Two loci were most frequently affected: D3S1067 (3p21.1-14.3) in 60% and D3S1217 (3p14.2-14.1) in 58%. One tumor seemed to have a homozygous deletion at 3p26, detected by the D3S1297 marker. Analysis of the clinical data showed that an increased number of aberrations in 3p was correlated with more advanced tumor stages.
- Published
- 1996
21. Correction: Host-Cell-Phenotypedependent Control of the BCR2/BWR1 Promoter Complex Regulates the Expression of Epstein-Barr Virus Nuclear Antigens 2-6
- Author
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Altiok, Ender, Minarovits, Janos, Li-Fu, Hu, Contreras-Brodin, Bertha, Klein, George, and Ernberg, Ingemar
- Published
- 1992
22. Isolation and sequencing of the Epstein-Barr virus BNLF-1 gene (LMP1) from a Chinese nasopharyngeal carcinoma
- Author
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Li-Fu Hu, Shi-Long Cao, Fu Chen, Ingemar Ernberg, Gösta Winberg, Eugene R. Zabarovsky, and George Klein
- Subjects
Male ,XhoI ,Herpesvirus 4, Human ,Genes, Viral ,viruses ,Molecular Sequence Data ,Restriction Mapping ,Mice, Nude ,Cell Line ,Viral Matrix Proteins ,Exon ,Mice ,hemic and lymphatic diseases ,Virology ,Tumor Cells, Cultured ,Animals ,Humans ,Genomic library ,Amino Acid Sequence ,Enhancer ,Deoxyribonucleases, Type II Site-Specific ,Promoter Regions, Genetic ,Gene ,Peptide sequence ,Antigens, Viral ,Mice, Inbred BALB C ,biology ,Base Sequence ,Nucleic acid sequence ,Nasopharyngeal Neoplasms ,Epstein–Barr virus latent membrane protein 1 ,Middle Aged ,Molecular biology ,Enhancer Elements, Genetic ,DNA, Viral ,biology.protein ,Sequence Alignment ,Polymorphism, Restriction Fragment Length - Abstract
The BamHI fragment containing the Epstein-Barr virus (EBV) LMP1 gene was cloned from a genomic library of the nude mouse-propagated Chinese nasopharyngeal carcinoma CAO. The sequence of the LMP1 gene and its promoter and enhancer was determined. The nucleotide sequence of the CAO isolate differed from those of the B95-8 and Raji isolates in the promoter/enhancer region; the amino acid sequence of the protein also differed. Structural differences in the protein were located mainly in the 20 N-terminal residues and the array of repeated amino acids in the C-terminal part of the protein, in which the CAO isolate displays a cluster of seven perfect repeats of 11 amino acids (aa). Three of these repeats have no counterpart in the other virus strains. This, together with two deletions of five and 10 aa in the C-terminal part, yields a protein of 404 aa, compared to 386 aa for B95-8 and Raji. The larger LMP1 protein was detected on immunoblots of tissue samples from the CAO nude mouse tumour, and was also present in EBV-negative B cell lines and immortalized keratinocytes transfected with the cloned gene. A XhoI restriction site in exon 1 of the B95-8 BNLF-1 gene was absent from the CAO EBV isolate, as well as from 36 of 37 Chinese NPC biopsies tested. In contrast, 17 of 19 NPC biopsies of African origin retained this XhoI site.
- Published
- 1991
23. Detection of nasopharyngeal carcinoma in Morocco (North Africa) using a multiplex methylation-specific PCR biomarker assay.
- Author
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Nawaz, Imran, Moumad, Khalid, Martorelli, Debora, Ennaji, Moulay Mustapha, Xiaoying Zhou, Zhe Zhang, Dolcetti, Riccardo, Khyatti, Meriem, Ernberg, Ingemar, and Li-Fu Hu
- Published
- 2015
- Full Text
- View/download PDF
24. Polymorphisms of XRCC1 genes and risk of nasopharyngeal carcinoma in the Cantonese population
- Author
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Yun Cao, Dongxin Lin, Xiaoping Miao, Yi Xin Zeng, Li-Fu Hu, Jian Yong Shao, Ingemar Ernberg, Ling Deng, and Ma Yan Huang
- Subjects
Oncology ,Male ,Cancer Research ,medicine.medical_specialty ,China ,Genotype ,Population ,Nasopharyngeal neoplasm ,Single-nucleotide polymorphism ,Biology ,lcsh:RC254-282 ,XRCC1 ,Age Distribution ,Asian People ,Risk Factors ,Internal medicine ,Genetics ,medicine ,Genetic predisposition ,Humans ,Genetic Predisposition to Disease ,education ,education.field_of_study ,Sex Characteristics ,Polymorphism, Genetic ,Smoking ,Case-control study ,Nasopharyngeal Neoplasms ,Middle Aged ,medicine.disease ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,DNA-Binding Proteins ,X-ray Repair Cross Complementing Protein 1 ,Nasopharyngeal carcinoma ,Female ,Research Article - Abstract
Background Nasopharyngeal carcinoma (NPC) is one of the most common cancers in southern China. In addition to environmental factors such as Epstein-Barr virus infection and diet, genetic susceptibility has been reported to play a key role in the development of this disease. The x-ray repair cross-complementing group 1 (XRCC1) gene is important in DNA base excision repair. We hypothesized that two common single nucleotide polymorphisms of XRCC1 (codons 194 Arg→Trp and 399 Arg→Gln) are related to the risk of NPC and interact with tobacco smoking. Methods We sought to determine whether these genetic variants of the XRCC1 gene were associated with the risk of NPC among the Cantonese population in a hospital-based case control study using polymerase chain reaction-restriction fragment length polymorphism analysis. We conducted this study in 462 NPC patients and 511 healthy controls. Results After adjustment for sex and age, we found a reduced risk of developing NPC in individuals with the Trp194Trp genotype (OR = 0.48; 95% CI, 0.27–0.86) and the Arg194Trp genotype (OR = 0.79; 95% CI, 0.60–1.05) compared with those with the Arg194Arg genotype. Compared with those with the Arg399Arg genotype, the risk for NPC was not significantly different in individuals with the Arg399Gln genotype (OR = 0.82; 95% CI, 0.62–1.08) and the Gln399Gln genotype (OR = 1.20; 95% CI, 0.69–2.06). Further analyses stratified by gender and smoking status revealed a significantly reduced risk of NPC among males (OR = 0.32; 95% CI, 0.14–0.70) and smokers (OR = 0.34; 95% CI, 0.14–0.82) carrying the XRCC1 194Trp/Trp genotype compared with those carrying the Arg/Arg genotype. No association was observed between Arg399Gln variant genotypes and the risk of NPC combined with smoking and gender. Conclusion Our findings suggest that the XRCC1 Trp194Trp variant genotype is associated with a reduced risk of developing NPC in Cantonese population, particularly in males and smokers. Larger studies are needed to confirm our findings and unravel the underlying mechanisms.
- Published
- 2006
25. Development of a multiplex methylation specific PCR suitable for (early) detection of non-small cell lung cancer.
- Author
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Nawaz, Imran, Xiaoming Qiu, Heng Wu, Yang Li, Yaguang Fan, Li-Fu Hu, Qinghua Zhou, and Ernberg, Ingemar
- Published
- 2014
- Full Text
- View/download PDF
26. A genome-wide scan suggests a susceptibility locus on 5p13 for nasopharyngeal carcinoma.
- Author
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Li-Fu Hu, Qian-Hui Qiu, Sheng-Miao Fu, Di Sun, Magnusson, Kristinn, Bing He, Lindblom, Annika, and Ernberg, Ingemar
- Subjects
- *
NASOPHARYNX cancer , *SOUTHEAST Asians , *GENETIC disorders , *CHROMOSOME abnormalities , *HUMAN genetics , *GENETICS , *DISEASES - Abstract
Nasopharyngeal carcinoma (NPC) occurs with high frequency in Southeast Asian populations. The high prevalence and familial clustering of NPC in these populations suggest that genetic factors may contribute to the increased cancer risk by affecting susceptibility. The aim of the present study was to map chromosomal loci linked to susceptibility genes predisposing for NPC. We carried out a genome-wide scan by multipoint affected-only allele-sharing methods in 15 Chinese NPC families with two to six affected members per family. The families were from the Guangdong province in the south of China, where the highest risk of NPC is documented. These samples were genotyped using 800 microsatellite markers covering all autosomal chromosomes with an average marker distance of 5 cM. Using multipoint linkage analysis, four loci (2q, 5p, 12p, and 18p) showed LOD scores above 1.5. After genotyping additional markers in these four regions, only one locus on 5p13 showed an increased LOD of 2.1. In further haplotype analysis, affected individuals in six families shared three marker haplotypes between D5S674 and D5S418. In conclusion, a region on 5p13 may harbor a susceptibility gene for NPC.European Journal of Human Genetics (2008) 16, 343–349; doi:10.1038/sj.ejhg.5201951; published online 16 January 2008 [ABSTRACT FROM AUTHOR]
- Published
- 2008
- Full Text
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27. Apoptosis Modulation of Epstein–Barr Virus-Encoded Latent Membrane Protein 1 in the Epithelial Cell Line HeLa Is Stimulus-Dependent
- Author
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Xiangning Zhang, Li-Fu Hu, Bengt Fadeel, and Ingemar Ernberg
- Subjects
tumor necrosis factor ,Viral transformation ,medicine.disease_cause ,HeLa ,Viral Matrix Proteins ,Epstein–Barr virus ,Downregulation and upregulation ,Virology ,medicine ,otorhinolaryngologic diseases ,Humans ,fas Receptor ,APO-1 ,Tumor Necrosis Factor alpha-Induced Protein 3 ,Etoposide ,CD40 ,latent membrane protein 1 ,biology ,Caspase 3 ,Tumor Necrosis Factor-alpha ,Intracellular Signaling Peptides and Proteins ,apoptosis ,Nuclear Proteins ,Proteins ,Nasopharyngeal Neoplasms ,Fas ,Fas receptor ,biology.organism_classification ,Molecular biology ,Cell biology ,DNA-Binding Proteins ,stomatognathic diseases ,Proto-Oncogene Proteins c-bcl-2 ,caspases ,Apoptosis ,Protein Biosynthesis ,biology.protein ,CD95 ,Tumor necrosis factor alpha ,HeLa Cells - Abstract
Epstein–Barr virus (EBV)-encoded latent membrane protein 1 (LMP1) is required for viral transformation and has been shown to protect lymphocytes from apoptosis. However, the effect of LMP1 on cells of epithelial origin remains poorly understood. Using the epithelial cell line HeLa in which the expression of LMP1 is inducibly regulated by tetracycline, we demonstrate that apoptosis triggered by ligation of the death receptor, Fas, or by the chemotherapeutic agent, etoposide, is potentiated by LMP1. Apoptosis was assessed by nuclear condensation and activation of caspase-3-like enzymes with concomitant proteolysis of the nuclear caspase substrate, poly(ADP-ribose) polymerase. However, the effect of LMP1 in HeLa cells appeared to be stimulus-dependent since apoptosis induced by tumor necrosis factor (TNF) was inhibited. Moreover, we observed an upregulation of the zinc finger protein A20 and a decrease in expression of Bcl-2 upon induction of LMP1 in HeLa cells. Taken together, these data further our understanding of the function of LMP1 in epithelial cells and suggest that LMP1, similar to its mammalian homolog CD40, can exert opposing effects on cell survival depending on the nature of the apoptosis trigger.
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28. A common region for proviral DNA integration in MoMuLV-induced rat thymic lymphomas
- Author
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Li Fu Hu, P. Gunter Strauss, and Philip N. Tsichlis
- Subjects
Thymoma ,Proviral dna ,Locus (genetics) ,Biology ,Transforming Genes ,medicine.disease_cause ,chemistry.chemical_compound ,Tissue culture ,medicine ,Animals ,Multidisciplinary ,Chromosome Mapping ,Defective Viruses ,DNA ,DNA Restriction Enzymes ,Neoplasms, Experimental ,Thymus Neoplasms ,Provirus ,Cell Transformation, Viral ,Virology ,Long latency ,Rats ,chemistry ,Moloney murine leukemia virus ,Carcinogenesis - Abstract
Similarly to other mammalian and avian retroviruses that lack a transforming gene1, moloney murine leukaemia virus (MoMuLV) causes no morphological transformation in infected tissue culture cells. However, following injection in an appropriate animal host, MoMuLV induces mainly thymic lymphomas after a long latency period2,3. A common characteristic of neoplasms induced by retroviruses lacking transforming genes is their clonal origin4–9. Here we have generated MoMuLV-induced rat thymic lymphomas and confirmed their clonal nature. Furthermore, we took advantage of the clonality of these tumours to investigate the specificity of provirus integration in the tumour DNA. We reasoned that if several independently derived thymic lymphomas would contain the provirus integrated in the same region of cellular DNA, this would be a strong indication that this integration event is a contributing factor in oncogenesis. The results indicate that there is indeed a cellular DNA region (termed the ML VI-1 locus) that serves as the substrate for proviral DNA integration in 5 out of 16 tumours we examined.
- Published
- 1983
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