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Intertidal rock pools support diverse assemblages. While there is much research on the importance of rock pools in supporting mobile diversity on rocky shores, there is limited knowledge regarding the role of physical features (microhabitats) within these habitats. Understanding the features of pools that support diversity is crucial to conserve and potentially mimic these important intertidal habitats in restoration projects. Here, we classified and quantified the types of physical features, hereafter “microhabitats” (overhangs and pits), within rock pools at different locations in and around a highly urbanised estuary, Sydney Harbour, Australia. The use of different microhabitats within rock pools by mobile macro-invertebrates was also examined in one location. We surveyed natural rock pools in summer (2 times) and winter (2 times) at seven sites: two sites from each of the inner and outer zones of Sydney Harbour, and three sites along the open coast of Sydney. We found that the type and size of microhabitats within pools decreased from the coastal towards inner harbour sites. Along the open coast, the richness of mobile taxa increased in rock pools with overhangs or pits. Only rock pools with overhangs had increased mobile abundances, likely driven by the gastropod Nerita melanotragus. Several species occurred in greater frequency in pools with overhangs. There was no effect of pits on abundances. This survey suggests that some microhabitats may play an important role in the diversity and abundance of mobile macro-invertebrates in rock pools. A detailed understanding of the local and regional scales of microhabitats should be used to inform eco-engineering of intertidal foreshores.

Around the world, coastal urbanization continues to replace natural marine habitats with engineered structures, resulting in wholesale changes to shallow-water ecosystems and associated socioecological impacts. This process is expected to continue over the coming decades. The development of meaningful strategies to minimize future impacts requires an understanding of the rate at which ‘coastal hardening’ will take place regionally. Here we show that coastal infrastructure has replaced more than half (52.9 ± 4.9%) of the coastline associated with 30 global urban centres. The regional extent of coastal hardening is explained by eight predictor variables associated with shipping, boating, regional economies, populations and coastline length. Using a case study approach, we forecasted a 50–76% expansion of coastal infrastructure over a 25-year period. Our model can aid decision-makers to anticipate increases in coastal hardening, supporting identification and management of future threats to coastal ecosystems alongside social, economic and cultural objectives. The world’s coasts are increasingly covered with built structures, such as piers and seawalls. This study finds that coastal infrastructure has replaced more than half of the coastline associated with 30 urban centres and forecasts future hotspots using New Zealand as a case study.

Novel combinations of climatic conditions due to climate change and prolonged fire seasons have contributed to an increased occurrence of "megafires". Such large-scale fires pose an unknown threat to biodiversity due to the increased extent and severity of burn. Assessments of wildfires often focus on terrestrial ecosystems and effects on aquatic habitats are less documented, particularly in coastal environments. In a novel application of eDNA techniques, we assessed the impacts of the 2019-2020 Australian wildfires on the diversity of estuarine benthic sediment communities in six estuaries in NSW, Australia, before and after the fires. Estuaries differed in area of catchment burnt (0-92%) and amount of vegetative buffer that remained post-fire between burnt areas and waterways. We found greater dissimilarities in the composition and abundance of eukaryotic and bacterial sediment communities in estuaries from burnt catchments with no buffer compared to those with an intact buffer or from unburnt catchments. Shifts in composition in highly burnt catchments were associated with increased concentrations of nutrients, carbon, including fire-derived pyrogenic carbon, and copper, which was representative of multiple highly correlated trace metals. Changes in the relative abundances of certain taxonomic groups, such as sulfate-reducing and nitrifying bacterial groups, in the most impacted estuaries indicate potential consequences for the functioning of sediment communities. These results provide a unique demonstration of the use of eDNA to identify wildfire impacts on ecological communities and emphasize the importance of vegetative buffers in limiting wildfire-associated impacts.

Successful decommissioning of subsea oil and gas infrastructure requires a safe and effective approach to assess and manage waste products. These products, often present as scale on internals of pipelines, include naturally occurring radioactive materials (NORM) and trace metals. Understanding the potential effects of these contaminants on marine fauna is crucial to managing global decommissioning. This review is composed of two aspects: 1) a systematic review was conducted to synthesize literature on all contaminants associated with decommissioned offshore structures and the effects of NORM contaminants on marine organisms; 2) a critical review of current environmental regulations for decommissioning and characterization of petroleum scale and NORM components. Studies defining the chemical and radiological contaminants associated with decommissioned structures were very limited. The main source of contaminants was identified from offshore platforms, with none from subsea structures. Only three studies measured variable chemical effects of radium to organisms from scale materials in subsea oil and gas infrastructure. No studies measured effects on organisms from other NORM, such as lead-210 and polonium-210. Currently, there are no international regulations on subsea pipeline closure, with NORM being underreported and not addressed in environmental impact assessments. This review highlights research gaps from environmental monitoring and characterization of NORM associated with decommissioned structures. Key recommendations for future research include characterizing NORM scale and assessing effects of scale to marine organisms through direct organism exposure experiments. This review emphasizes the need to incorporate ecotoxicology into environmental risk assessment for offshore petroleum decommissioning.

Globally, collapse of ecosystems—potentially irreversible change to ecosystem structure, composition and function—imperils biodiversity, human health and well‐being. We examine the current state and recent trajectories of 19 ecosystems, spanning 58° of latitude across 7.7 M km2, from Australia's coral reefs to terrestrial Antarctica. Pressures from global climate change and regional human impacts, occurring as chronic ‘presses’ and/or acute ‘pulses’, drive ecosystem collapse. Ecosystem responses to 5–17 pressures were categorised as four collapse profiles—abrupt, smooth, stepped and fluctuating. The manifestation of widespread ecosystem collapse is a stark warning of the necessity to take action. We present a three‐step assessment and management framework (3As Pathway Awareness, Anticipation and Action) to aid strategic and effective mitigation to alleviate further degradation to help secure our future.

Urban and periurban ocean developments impact 1.5% of the global exclusive economic zones, and the demand for ocean space and resources is increasing. As we strive for a more sustainable future, it is imperative that we better design, manage, and conserve urban ocean spaces for both humans and nature. We identify three key objectives for more sustainable urban oceans: reduction of urban pressures, protection and restoration of ocean ecosystems, and support of critical ecosystem services. We describe an array of emerging evidence-based approaches, including greening grayinfrastructure, restoring habitats, and developing biotechnologies. We then explore new economic instruments and incentives for supporting these new approaches and evaluate their feasibility in delivering these objectives. Several of these tools have the potential to help bring nature back to the urban ocean while also addressing some of the critical needs of urban societies, such as climate adaptation, seafood production, clean water, and recreation, providing both human and environmental benefits in some of our most impacted ocean spaces.

Over the last century, human activities have increased the amount of nutrients inputs to terrestrial and aquatic ecosystems. These activities have altered nitrogen (N) and phosphorus (P) cycling, causing substantial changes in ecosystem function such as provision of clean air and water. Strategies that reduce and remove excess nutrients are urgently needed to remediate impacted systems. Reef-forming shellfish (oysters and mussels) can play a crucial role in nutrient cycling, particularly in N removal from aquatic systems by providing substrate for microbial colonisation and enhancing microbial denitrification in the surrounding sediments. However, the potential for shellfish to enhance nutrient cycling (and denitrification) will likely vary spatially and in response to several environmental factors. Here, we used 1) a qualitative analysis to review nutrient processes occurring on shellfish; and 2) a meta-analysis to evaluate the influence of shellfish on benthic metabolism and nutrient cycling in surrounding sediments, and how that is influenced by environmental factors such as grain size, seasonality, water body type, and tidal position. Overall, we found that shellfish increased oxygen consumption, with consequent release of ammonia (NH

The sprawl of marine construction is one of the most extreme human modifications to global seascapes. Nevertheless, its global extent remains largely unquantified compared to that on land. We synthesized disparate information from a diversity of sources to provide a global assessment of the extent of existing and projected marine construction and its effects on the seascape. Here we estimated that the physical footprint of built structures was at least 32,000 km2 worldwide as of 2018, and is expected to cover 39,400 km2 by 2028. The area of seascape modified around structures was 1.0–3.4 × 106 km2 in 2018 and was projected to increase by 50–70% for power and aquaculture infrastructure, cables and tunnels by 2028. In 2018, marine construction affected 1.5% (0.7–2.4%) of global Exclusive Economic Zones, comparable to the global extent of urban land estimated at 0.02–1.7%. This study provides a critical baseline for tracking future marine human development.

Estuaries are one of the most valuable biomes on earth. Although humans are highly dependent on these ecosystems, anthropogenic activities have impacted estuaries worldwide, altering their ecological functions and ability to provide a variety of important ecosystem services. Many anthropogenic stressors combine to affect the soft sedimentary habitats that dominate estuarine ecosystems. Now, due to climate change, estuaries and other marine areas might be increasingly exposed to the emerging threat of megafires. Here, by sampling estuaries before and after a megafire, we describe impacts of wildfires on estuarine benthic habitats and justify why megafires are a new and concerning threat to coastal ecosystems. We (1) show that wildfires change the fundamental characteristics of estuarine benthic habitat, (2) identify the factors (burnt intensity and proximity to water's edge) that influence the consequences of fires on estuaries, and (3) identify relevant indicators of wildfire impact: metals, nutrients, and pyrogenic carbon. We then discuss how fires can impact estuaries globally, regardless of local variability and differences in catchment. In the first empirical assessment of the impact of wildfires on estuarine condition, our results highlight indicators that may assist waterway managers to empirically detect wildfire impacts in estuaries and identify catchment factors that should be included in fire risk assessments for estuaries. Overall, this study highlights the importance of considering fire threats in current and future estuarine and coastal management.

Terrestrial, marine, and freshwater realms are inherently linked through ecological, biogeochemical and/or physical processes. An understanding of these connections is critical to optimise management strategies and ensure the ongoing resilience of ecosystems. Artificial light at night (ALAN) is a global stressor that can profoundly affect a wide range of organisms and habitats and impact multiple realms. Despite this, current management practices for light pollution rarely consider connectivity between realms. Here we discuss the ways in which ALAN can have cross-realm impacts and provide case studies for each example discussed. We identified three main ways in which ALAN can affect two or more realms: 1) impacts on species that have life cycles and/or stages on two or more realms, such as diadromous fish that cross realms during ontogenetic migrations and many terrestrial insects that have juvenile phases of the lifecycle in aquatic realms; 2) impacts on species interactions that occur across realm boundaries, and 3) impacts on transition zones or ecosystems such as mangroves and estuaries. We then propose a framework for cross-realm management of light pollution and discuss current challenges and potential solutions to increase the uptake of a cross-realm approach for ALAN management. We argue that the strengthening and formalisation of professional networks that involve academics, lighting practitioners, environmental managers and regulators that work in multiple realms is essential to provide an integrated approach to light pollution. Networks that have a strong multi-realm and multi-disciplinary focus are important as they enable a holistic understanding of issues related to ALAN.

The replacement of natural marine habitats with less structurally complex human infrastructure has been linked to the homogenisation of epibenthic assemblages and associated changes in fish assemblages. To mitigate these impacts, eco-engineering efforts have focussed on increasing the physical and biogenic complexity of artificial structures, in the form of crevices added to seawalls and the seeding of the substrate with habitat-forming organisms such as oysters. While these studies have assessed how these interventions affect epibenthic assemblages, the effect of these strategies on the behaviour, such as feeding and habitat use, of different functional groups of fish (e.g. cryptobenthic and pelagic) remains uncertain. To do this, we manipulated complexity on seawalls by adding concrete tiles with different physical (flat or structured with crevices and ridges) and biogenic (seeding with two common habitat-forming species or naturally recruited fouling) complexities. We assessed pelagic and cryptobenthic fish species composition, abundance, interaction time with the tiles and number of feeding bites on three occasions 8–12 months after deployment. Cryptobenthic fish interacted more with physically complex tiles than flat tiles, regardless of biogenic complexity. In contrast, cryptobenthic fish fed more from flat tiles compared to physically complex tiles, and also appeared to feed more from tiles seeded with oysters. Pelagic fish interacted and fed more from naturally fouled tiles compared to unfouled control tiles, regardless of physical complexity. This study showed that manipulating complexity at the scales used here affects behaviour of fish, but it does not affect fish community. Increasing physical complexity facilitated fish use of seawalls as habitat by providing refuge, while it also hindered fish feeding by providing refuge for their prey. Cryptobenthic fish are important trophic linkages in their ecosystems and we have shown that by changing habitat complexity, we can change the habitat use and feeding activity of these fish, allowing them to fulfil this essential ecosystem role.

Environmental challenges persist across the world, including the Australasian region of Oceania, where biodiversity hotspots and unique ecosystems such as the Great Barrier Reef are common. These systems are routinely affected by multiple stressors from anthropogenic activities, and increasingly influenced by global megatrends (e.g., the food–energy–water nexus, demographic transitions to cities) and climate change. Here we report priority research questions from the Global Horizon Scanning Project, which aimed to identify, prioritize, and advance environmental quality research needs from an Australasian perspective, within a global context. We employed a transparent and inclusive process of soliciting key questions from Australasian members of the Society of Environmental Toxicology and Chemistry. Following submission of 78 questions, 20 priority research questions were identified during an expert workshop in Nelson, New Zealand. These research questions covered a range of issues of global relevance, including research needed to more closely integrate ecotoxicology and ecology for the protection of ecosystems, increase flexibility for prioritizing chemical substances currently in commerce, understand the impacts of complex mixtures and multiple stressors, and define environmental quality and ecosystem integrity of temporary waters. Some questions have specific relevance to Australasia, particularly the uncertainties associated with using toxicity data from exotic species to protect unique indigenous species. Several related priority questions deal with the theme of how widely international ecotoxicological data and databases can be applied to regional ecosystems. Other timely questions, which focus on improving predictive chemistry and toxicology tools and techniques, will be important to answer several of the priority questions identified here. Another important question raised was how to protect local cultural and social values and maintain indigenous engagement during problem formulation and identification of ecosystem protection goals. Addressing these questions will be challenging, but doing so promises to advance environmental sustainability in Oceania and globally., Key Points The first process to identify priority research questions for the Australasian region of Oceania.Priority areas identified included integration of ecology and ecotoxicology, impacts of multiple stressors, and using data from exotic species to protect indigenous species.The need to protect local cultural and social values and maintain indigenous peoples’ engagement during problem formulation and identification of ecosystem protection goals was also highlighted.

Coastal ecosystems are under growing pressure from human activities such as pollution and climate change. Although the rapidly growing numbers of humans living in coastal areas is a large part of the problem, there is great opportunity to improve the resistance and resilience of biotic communities via creative changes to the engineering design of built infrastructure. Here, we apply ecological theories to create a framework for adaptive building in marine systems that can be applied by managers worldwide. We explain how climate effects could be mitigated across different spatial scales with both physical and biological interventions. This requires an approach based on ecological theory that incorporates our understanding of how systems withstand (resistance) or recover (resilience) from impacts and takes into account future local and global environmental conditions. By translating ecological theory into practical application, we propose a framework for the choice and design of coastal infrastructure that can underpin effective, forward-looking conservation strategies.

Human activities introduce significant contamination into aquatic systems that impact biodiversity and ecosystem function. Many contaminants accumulate, and remediation options are now required worldwide. One method for bioremediation involves the application of macrofauna to stimulate microbial ecosystem processes including contaminant removal. However, if we are to confidently apply such a technique, we need clarity on the effect of bioturbators on different contaminants and how these vary under different environmental scenarios. Here we used a systematic review and meta-analysis to analyse current knowledge on the activities of bioturbating macrofauna in contaminated sediments and quantify how bioturbation-bioremediation changes depend on the taxonomic group, the aquatic ecosystem and important environmental variables. Three common contaminant classes were reviewed and analysed: metals, nutrients (i.e. ammonia and phosphorous) and polycyclic aromatic hydrocarbons (PAH). In addition, meta-regressions were calculated to estimate the effect of environmental and experimental design variables on effect sizes. Meta-analytic results revealed that deeper burrowing and more active sediment surface animals (e.g. polychaetes) increased metal release from sediments, nutrients and oxygen uptake by microbial fractions in comparison to bioturbators that inhabit shallower depths in sediments. In addition, there was a different effect of bioturbators on response variables in different aquatic systems. Finally, bioturbator effects on nutrient and metal release appeared modulated by context-specific variables such as temperature, pH, sediment grain size, animal density and experimental duration. Our findings highlight critical knowledge gaps such as field applications, less studied macrobenthic fauna and the incorporation of molecular approaches. Our results provide the first quantitative synthesis of the effects of bioturbators on contaminant fate and the variables that need to be considered for the optimization of this method as a viable approach for sediment remediation and contaminant management in aquatic systems.

Real-world observational datasets that record and quantify pressure-stressor-response linkages between effluent discharges and natural aquatic systems are rare. With global wastewater volumes increasing at unprecedented rates, it is urgent that the present dataset is available to provide the necessary information about microbial community structure and functioning. Field studies were performed at two time-points in the Austral summer. Single-species and microbial community whole effluent toxicity (WET) testing was performed at a complete range of effluent concentrations and two salinities, with accompanying environmental data to provide new insights into nutrient and organic matter cycling, and to identify ecotoxicological tipping points. The two salinity regimes were chosen to investigate future scenarios based on a predicted salinity increase at the study site, typical of coastal regions with rising sea levels globally. Flow cytometry, amplicon sequencing of 16S and 18S rRNA genes and micro-fluidic quantitative polymerase-chain reactions (MFQPCR) were used to determine chlorophyll-a and total bacterial cell numbers and size, as well as taxonomic and functional diversity of pelagic microbial communities. This strong pilot dataset could be replicated in other regions globally and would be of high value to scientists and engineers to support the next advances in microbial ecotoxicology, environmental biomonitoring and estuarine water quality modelling., Measurement(s)water composition • total dissolved solids • conductivity of water • pH • concentration of oxygen in water • Total Organic Carbon • dinitrogen • phosphorus atom • ammonia • nitrate • nitrite • biological oxygen demand • chlorophyll a • Cell Density • Algae • Bacteria • hydrogen sulfide • Toxicity • rRNA_16S • rRNA_18S • abundance of nutrient cycling genes • abundance of antibiotic resistance genesTechnology Type(s)water quality unit • water testing suite • dilution method • autofluorescence • flow cytometry method • whole effluent toxicity testing • DNA sequencing • microfluidic quantitative polymerase chain reactionFactor Type(s)effluent concentration • salinity levelsSample Characteristic - OrganismBacteria • algaeSample Characteristic - Environmentwaste water • estuary • sea coast • saline water • fresh water bodySample Characteristic - LocationHunter River Machine-accessible metadata file describing the reported data: 10.6084/m9.figshare.12221738

The expansion of built infrastructure in the marine environment threatens natural ecological communities at local and regional scales. An increasing interest in incorporating heterogeneity that is reflective of natural rocky shores into artificial structures through ecological engineering seeks to mitigate negative impacts. The addition of complex surfaces and novel habitats, such as water-retaining features, has been particularly successful at increasing biodiversity of marine infrastructures to date. Importantly, key habitat-forming groups, such as the complex turfing algae Corallina officinalis found on natural shores and their associated assemblages are still lacking from these eco-engineered features. Furthermore, whether observed biodiversity increases from eco-engineering are due to native or non-indigenous species remains largely unknown. Here, we investigated whether adding small-scale complexity (artificial turf) to artificial rock-pools (‘flowerpots’) on urban seawalls enhanced their effectiveness to increase native biodiversity. Responses of benthic invertebrates, algae, epifauna and fish in flowerpots with and without artificial turf (coir) were quantified. Contrary to existing literature, which reports an increase in biodiversity with an increase in complexity, no consistent effect of coir was seen on benthic, epifaunal or fish assemblages. Native species consistently occupied more than 95% of space in flowerpots while the proportion of non-indigenous species in flowerpots was small (

This editorial describes a 12-paper special issue that began with a symposium at EcoSummit 2016 in Montpellier France in August/September 2016 with a focus on ecological engineering and spatial planning in coastal seascapes. The papers in this issue review ideas around experimental design for testing and application of eco-engineering to reduce the impacts of coastal infrastructure and improve ecological outcomes. Similarly, the need for early integration of ecological principles into engineering designs (eco-design) is highlighted as a key factor in the success of impact mitigation (2 papers). Ideas are presented on spatial planning for coastal infrastructure to mitigate and offset impacts at regional scales (3 papers). At more local scales, empirical evidence is presented to support the manipulation of physical complexity on coastal infrastructure through the addition of artificial rock pools and turf mimics, as well as complex crevice and ledge habitat (3 papers). Chemical manipulations of substrate (concrete) are also explored (3 papers) with the aim of increasing the sustainability of structures and improving specific ecological outcomes. While increasing human pressure has pushed our oceans out of balance, this special issue provides practical solutions, supported by case studies and empirical data to begin helping the “feng shui” of our coastal seascape.

Macroinvertebrate surveys are commonly used for assessing the health of freshwater systems around the world. Traditionally, surveying involves morphologically identifying the families, and sometimes genera, present in samples. Biological indices, derived from taxonomic lists, provide convenient ways to summarise community data and may be fairly insensitive to species-level changes in community compositions. In recent years, molecular techniques for identifying taxa have become increasingly popular and metabarcoding approaches that offer the ability to identify species from mixtures of whole animals (bulk-samples) or from environmental samples have gained much attention. However, generating accurate species lists from metabarcode data is challenging and can be impacted by sample type, choice of primers, community composition within samples, and the availability of reference sequences. This study compares the performance of molecular data extracted from bulk-samples against morphological data in calculating two biological indices (the Stream Invertebrate Grade Number Average Level 2 (SIGNAL2), which is calculated from family-level data, and a genus-level equivalent of this index, SIGNAL_SG) and one biological metric (taxon richness). Further, molecular indices and metrics derived from global, local or mixed reference DNA libraries and with varying degrees of filtering processes applied to them, are compared with respect to the strength of their relationships with morphological indices and metrics. Molecularly derived SIGNAL2 and SIGNAL_SG scores correlated strongly with morphologically derived scores, and were strongest when using a reference library containing a mix of local and global data. Molecularly derived richness metrics were moderately correlated with morphological taxa richness; however, the strongest correlations were observed when taxa that could not be assigned SIGNAL grades were omitted from analyses. This study highlights the utility of using molecular data as an objective and sensitive alternative to traditional freshwater biological assessment using macroinvertebrates.

Extensive development and construction in marine and coastal systems is driving a phenomenon known as “ocean sprawl”. Ocean sprawl removes or transforms marine habitats through the addition of artificial structures and some of the most significant impacts are occurring in sedimentary environments. Marine sediments have substantial social, ecological, and economic value, as they are rich in biodiversity, crucial to fisheries productivity, and major sites of nutrient transformation. Yet the impact of ocean sprawl on sedimentary environments has largely been ignored. Here we review current knowledge of the impacts to sedimentary ecosystems arising from artificial structures.\ud \ud Artificial structures alter the composition and abundance of a wide variety of sediment-dependent taxa, including microbes, invertebrates, and benthic-feeding fishes. The effects vary by structure design and configuration, as well as the physical, chemical, and biological characteristics of the environment in which structures are placed. The mechanisms driving effects from artificial structures include placement loss, habitat degradation, modification of sound and light conditions, hydrodynamic changes, organic enrichment and material fluxes, contamination, and altered biotic interactions. Most studies have inferred mechanism based on descriptive work, comparing biological and physical processes at various distances from structures. Further experimental studies are needed to identify the relative importance of multiple mechanisms and to demonstrate causal relationships. Additionally, past studies have focused on impacts at a relatively small scale, and independently of other development that is occurring. There is need to quantify large-scale and cumulative effects on sedimentary ecosystems as artificial structures proliferate. We highlight the importance for comprehensive monitoring using robust survey designs and outline research strategies needed to understand, value, and protect marine sedimentary ecosystems in the face of a rapidly changing environment.

© 2019 Elsevier B.V. Natural systems are threatened by a variety of anthropogenic stressors and so understanding the interactive threats posed by multiple stressors is essential. In this study we focused on urban stressors that are ubiquitous to urban estuarine systems worldwide: elevated nutrients, toxic chemical contaminants, built infrastructure and non-indigenous species (NIS). We investigated structural (abundance, diversity and species richness) and functional endpoints (productivity, primary production (chlorophyll-a) and metabolism) commonly used to determine responses to these selected stressors. Through a systematic review of global literature, we found 579 studies of our selected stressors; 93% measured responses to a single stressor, with few assessing the effects of multiple stressors (7%). Structural endpoints were commonly used to measure the effects of stressors (49% of the total 579 studies). Whereas, functional endpoints were rarely assessed alone (10%) but rather in combination with structural endpoints (41%). Elevated nutrients followed by NIS were the most studied single stressors (43% and 16% of the 541 single stressor studies), while elevated nutrients and toxic contaminants were overwhelmingly the most common stressor combination (79% of the 38 multiple stressor studies); with NIS and built infrastructure representing major gaps in multi-stressor research. In the meta-analysis, structural endpoints tended to decrease, while functional endpoints increased and/or decreased in response to different types of organisms or groups. We predicted an antagonistic effect of elevated nutrients and toxic contaminants based on the opposing enriching versus toxic effects of this stressor combination. Of note, biodiversity was the only endpoint that revealed such an antagonistic response. Our results highlight the continuing paucity of multiple stressor studies and provide evidence for opposing patterns in the responses to single and interacting stressors depending on the measured endpoint. The latter is of significant consequence to understanding relevant impacts of stressors in coastal monitoring and management.

Sea-level rise is an inevitable consequence of climate change and threatens coastal ecosystems, particularly intertidal habitats that are constrained by landward development. Intertidal habitats support significant biodiversity, but also provide natural buffers from climate-threats such as increased storm events. Predicting the effects of climate scenarios on coastal ecosystems is important for understanding both the degree of habitat loss for associated ecological communities and the risk of the loss of coastal buffer zones. We take a novel approach by combining remote sensing with the IUCN Red List of Ecosystem criteria to assess this impact. We quantified the extent of horizontal intertidal rocky shores along ~200 km of coastline in Eastern Australia using GIS and remote-sensing (LiDAR) and used this information to predict changes in extent under four different climate change driven sea-level rise scenarios. We then applied the IUCN Red List of Ecosystems Criterion C2 (habitat degradation over the next 50 years based on change in an abiotic variable) to estimate the status of this ecosystem using the Hawkesbury Shelf Marine Bioregion as a test coastline. We also used four individual rocky shores as case studies to investigate the role of local topography in determining the severity of sea-level rise impacts. We found that, if the habitat loss within the study area is representative of the entire bioregion, the IUCN status of this ecosystem is ‘near threatened’, assuming that an assessment of the other criteria would return lower categories of risk. There was, however, high spatial variability in this effect. Rocky shores with gentle slopes had the highest projected losses of area whereas rocky shores expanding above the current intertidal range were less affected. Among the sites surveyed in detail, the ecosystem status ranged from ‘least concern’ to ‘vulnerable’, but reached ‘endangered’ under upper estimates of the most severe scenario. Our results have important implications for conservation management, highlighting a new link between remote sensing and the IUCN Red List of Ecosystem criteria that can be applied worldwide to assess ecosystem risk to sea-level rise.

A workshop was held in Wageningen, The Netherlands, in September 2017 to collate data and literature on three aquatic ecosystem types (agricultural drainage ditches, urban floodplains, and urban estuaries), and develop a general framework for the assessment of multiple stressors on the structure and functioning of these systems. An assessment framework considering multiple stressors is crucial for our understanding of ecosystem responses within a multiply stressed environment, and to inform appropriate environmental management strategies. The framework consists of two components: (i) problem identification and (ii) impact assessment. Both assessments together proceed through the following steps: 1) ecosystem selection; 2) identification of stressors and quantification of their intensity; 3) identification of receptors or sensitive groups for each stressor; 4) identification of stressor-response relationships and their potential interactions; 5) construction of an ecological model that includes relevant functional groups and endpoints; 6) prediction of impacts of multiple stressors, 7) confirmation of these predictions with experimental and monitoring data, and 8) potential adjustment of the ecological model. Steps 7 and 8 allow the assessment to be adaptive and can be repeated until a satisfactory match between model predictions and experimental and monitoring data has been obtained. This paper is the preface of the MAEGA (Making Aquatic Ecosystems Great Again) special section that includes three associated papers which are also published in this volume, which present applications of the framework for each of the three aquatic systems.

Offshore oil and gas activities can result in the discharge of large amounts of drilling muds. While these materials have generally been regarded as non-toxic to marine organisms, recent studies have demonstrated negative impacts to suspension feeding organisms. We exposed the arctic-boreal sponge Geodia barretti to the primary particulate components of two water-based drilling muds; barite and bentonite. Sponges were exposed to barite, bentonite and a natural reference sediment at a range of total suspended solid concentrations (TSS = 0, 10, 50 or 100 mg/L) for 12 h after which we measured a suite of biomarker responses (lysosomal membrane stability, lipid peroxidation and glutathione). In addition, we compared biomarker responses, organic energy content and metal accumulation in sponges, which had been continuously or intermittently exposed to suspended barite and natural sediment for 14 d at relevant concentrations (10 and 30 mg TSS/L). Lysosomal membrane stability was reduced in the sponges exposed to barite at 50 and 100 mg TSS/L after just 12 h and at 30 mg TSS/L for both continuous and intermittent exposures over 14 d. Evidence of compromised cellular viability was accompanied by barite analysis revealing concentrations of Cu and Pb well above reference sediments and Norwegian sediment quality guidelines. Metal bioaccumulation in sponge tissues was low and the total organic energy content (determined by the elemental composition of organic tissue) was not affected. Intermittent exposures to barite resulted in less toxicity than continuous exposure to barite. Short term exposures to bentonite did not alter any biomarker responses. This is the first time that these biomarkers have been used to indicate contaminant exposure in an arctic-boreal sponge. Our results illustrate the potential toxicity of barite and the importance of assessments that reflect the ways in which these contaminants are delivered under environmentally realistic conditions.

© 2018 Lee et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Several reproductive strategies have been identified as key factors that contribute to the establishment and dispersal of invasive species in new environments. These strategies include early maturity, high reproductive capacity and flexibility in timing of reproduction. It is therefore critical to investigate the reproductive biology of target exotic species to understand their potential for population increase and invasive spread, and to inform management control strategies. The European fanworm, Sabella spallanzanii (Gmelin 1791), has established invasive populations along the southern coast of Australia. Gamete development and reproductive periodicity of this worm were investigated in two populations in Gulf St Vincent in South Australia over a 1 year period (July 2012 to June 2013). Samples of worms were collected monthly and dissected for histological analysis. Most individuals reached reproductive maturity at 70 mm body length (thorax and abdomen). Individuals from both populations contained mature and developing gametes year-round and a distinct spawning season was not observed. This may indicate sustained spawning by the population over the year, which provides a constant supply of new recruits to the area. Body length and egg size of worms from these populations were smaller than conspecifics in its native range and other invasive locations. Reproduction and development of S. spallanzanii differs not only between native and invasive locations, but also within invasive locations. This study has shown that S. spallanzanii exhibits a higher phenotypic plasticity and reproductive flexibility than previously known.

Host-associated microbial communities play a fundamental role in the life of eukaryotic hosts. It is increasingly argued that hosts and their microbiota must be studied together as 'holobionts' to better understand the effects of environmental stressors on host functioning. Disruptions of host–microbiota interactions by environmental stressors can negatively affect host performance and survival. Substantial ecological impacts are likely when the affected hosts are habitat-forming species (e.g., trees, kelps) that underpin local biodiversity. In marine systems, coastal urbanisation via the addition of artificial structures is a major source of stress to habitat formers, but its effect on their associated microbial communities is unknown. We characterised kelp-associated microbial communities in two of the most common and abundant artificial structures in Sydney Harbour—pier-pilings and seawalls—and in neighbouring natural rocky reefs. The kelp Ecklonia radiata is the dominant habitat-forming species along 8000 km of the temperate Australian coast. Kelp-associated microbial communities on pilings differed significantly from those on seawalls and natural rocky reefs, possibly due to differences in abiotic (e.g., shade) and biotic (e.g., grazing) factors between habitats. Many bacteria that were more abundant on kelp on pilings belonged to taxa often associated with macroalgal diseases, including tissue bleaching in Ecklonia. There were, however, no differences in kelp photosynthetic capacity between habitats. The observed differences in microbial communities may have negative effects on the host by promoting fouling by macroorganisms or by causing and spreading disease over time. This study demonstrates that urbanisation can alter the microbiota of key habitat-forming species with potential ecological consequences., Microbial–host interaction: Holobionts and harbours Artificial structures in the marine coastal environment, such as piers and seawalls can alter microbial interactions with seaweed hosts. Researchers in Australia, led by Ezequiel Marzinelli at the University of New South Wales, studied the microbial communities growing on kelps in Sydney Harbour. They compared this altered environment with neighbouring natural rocky reefs. The work illustrates the “holobiont” concept, which treats communities of microbes and hosts as holistic entities. Significant findings included an increase in microbes associated with algal diseases in pier piling structures. This study shows that urbanisation of the coastal environment can have ecological consequences on major habitat-forming species such as kelp. The researchers argue that the combination of abiotic factors, such as shade, and biotic factors, such as altered grazing patterns, might be involved.

Globally the coastal zone is suffering the collateral damage from continuing urban development and construction, expanding resource sectors, increasing population, regulation to river flow, and on-going land change and degradation. While protection of natural coastal habitat is recommended, balancing conservation with human services is now the challenge for managers. Marine infrastructure such as seawalls, marinas and offshore platforms is increasingly used to support and provide services, but has primarily been designed for engineering purposes without consideration of the ecological consequences. Increasingly developments are seeking alternatives to hard engineering and a range of ecological solutions has begun to replace or be incorporated into marine and coastal infrastructure. But too often, hard engineering remains the primary strategy because the tools for managers to implement ecological solutions are either lacking or not supported by policy and stakeholders. Here we outline critical research needs for marine urban development and emerging strategies that seek to mitigate the impacts of marine infrastructure. We present case studies to highlight the strategic direction necessary to support management decisions internationally.

Ecosystems modified by human activities are generally predicted to be biologically impoverished. However, much pollution impact theory stems from laboratory or small-scale field studies, and few studies replicate at the level of estuary. Furthermore, assessments are often based on sediment contamination and infauna, and impacts to epibiota (sessile invertebrates and algae) are seldom considered. We surveyed epibiota in six estuaries in south-east Australia. Half the estuaries were relatively pristine, and half were subject to internationally high levels of contamination, urbanisation, and industrialisation. Contrary to predictions, epibiota in modified estuaries had greater coverage and were similarly diverse as those in unmodified estuaries. Change in epibiota community structure was linearly correlated with sediment-bound copper, and the tubeworm Hydroides elegans showed a strong positive correlation with sediment metals. Stressors such as metal contamination can reduce biodiversity and productivity, but others such as nutrient enrichment and resource provision may obscure signals of impact.

Viruses are ubiquitous, abundant and play an important role in all ecosystems. Here, we advance understanding of coastal sediment viruses by exploring links in the composition and abundance of sediment viromes to environmental stressors and sediment bacterial communities. We collected sediment from contaminated and reference sites in Sydney Harbour and used metagenomics to analyse viral community composition. The proportion of phages at contaminated sites was significantly greater than phages at reference sites, whereas eukaryotic viruses were relatively more abundant at reference sites. We observed shifts in viral and bacterial composition between contaminated and reference sites of a similar magnitude. Models based on sediment characteristics revealed that total organic carbon in the sediments explained most of the environmental stress-related variation in the viral dataset. Our results suggest that the presence of anthropogenic contaminants in coastal sediments could be influencing viral community composition with potential consequences for associated hosts and the environment.

Microbially mediated biogeochemical processes are crucial for climate regulation and may be disrupted by anthropogenic contaminants. To better manage contaminants, we need tools that make real‐time causal links between stressors and altered microbial functions, and the potential consequences for ecosystem services such as climate regulation. In a manipulative field experiment, we used metatranscriptomics to investigate the impact of excess organic enrichment and metal contamination on the gene expression of nitrogen and sulfur metabolisms in coastal sediments. Our gene expression data suggest that excess organic enrichment results in (i) higher transcript levels of genes involved in the production of toxic ammonia and hydrogen sulfide and (ii) lower transcript levels associated with the degradation of a greenhouse gas (nitrous oxide). However, metal contamination did not have any significant impact on gene expression. We reveal the genetic mechanisms that may lead to altered productivity and greenhouse gas production in coastal sediments due to anthropogenic contaminants. Our data highlight the applicability of metatranscriptomics as a management tool that provides an immense breadth of information and can identify potentially impacted process measurements that need further investigation.

The strength and importance of consumer effects are predicted to increase towards low latitudes, but this hypothesis has rarely been tested using a spatially consistent methodology. In a consumer-exclusion experiment spanning twenty degrees of latitude along the east Australian coast, the magnitude of consumer effects on assemblage-level metrics of sub-tidal sessile assemblage composition was no greater at low than high latitudes. Across caged and control assemblages, Shannon's diversity, Pielou's evenness and richness of functional groups decreased with increasing latitude, but the magnitude of consumer effects on these metrics did not display consistent latitudinal gradients. Instead, latitudinal gradients in consumer effects were apparent for individual functional groups. Solitary ascidians displayed the pattern consistent with predictions of greater direct effects of predators at low than high latitude. As consumers reduced the biomass of this and other competitive dominants, groups less prone to predation (e.g. hydroids, various groups of bryozoans) were able to take advantage of freed space in the presence of predators and show increased abundances there. This large-scale empirical study demonstrates the complexity of species interactions, and the failure of assemblage-level metrics to adequately capture consumer effects over large spatial gradients. This article is protected by copyright. All rights reserved.

Human activities threaten global ecosystems through the introduction of a range of contaminants. The potential effects of contaminants are commonly tested on organisms, or cell lines, in separate tests: one toxicant and one species at a time. The results have limited predictive capacity in complex ecosystems, and when they are used to calculate guideline toxicity values, multiple safety factors must be applied to mitigate this uncertainty. Community responses can provide a more realistic assessment of contaminant effects but may be more difficult to detect and interpret. In recent years, advances in molecular approaches have significantly improved our ability to investigate community responses at the micro scale. Microbial groups represent a major source of biomass and chemical activity in many ecosystems and they include many of the most chemically sensitive organism groups. Traditional microbial ecotoxicological studies have either measured impacts on diversity or on ecosystem function, with very few attempting to quantify both diversity and function at the same time. Molecular approaches to microbial ecotoxicology have the potential to reveal novel elements of ecosystem change such as the mechanisms behind functional responses to contaminants. This is crucial to understand because structural changes do not necessarily translate to a change in function and vice versa. Increasing our understanding of stress-related structural and functional changes in microbial groups that drive global biogeochemical cycles will enable highly relevant and sensitive predictions of the impact of contaminants on ecosystem health.

Cost-effective and sensitive measures of anthropogenic stress are necessary tools in any environmental monitoring program. When implementing new monitoring tools in a region, rigorous laboratory and field studies are essential for characterizing the sensitivity and efficacy of the approach. We exposed the oyster Saccostrea glomerata to various individual contaminants through multiple exposure pathways (water- and food-borne) in the laboratory and measured two biomarker responses, lysosomal membrane stability (LMS) and lipid peroxidation (LPO). LMS was sensitive to both contaminant exposure pathways. We subsequently measured this biomarker in oysters which had been experimentally deployed at multiple sites in each of ten estuaries with varying levels of contamination associated with re-suspended sediments. There was a strong association between LMS and metal exposure, despite substantial natural variation in water quality parameters. Our results illustrate the potential use of LMS as a pragmatic indicator of biotic injury in environmental monitoring programs for re-suspended contaminated sediments.

Underwater cities have long been the subject of science fiction novels and movies, but the “urban sprawl” of artificial structures being developed in marine environments has widespread ecological consequences. The practice of combining ecological principles with the planning, design, and operation of marine artificial structures is gaining in popularity, and examples of successful engineering applications are accumulating. Here we use case studies to explore marine ecological engineering in practice, and introduce a conceptual framework for designing artificial structures with multiple functions. The rate of marine urbanization will almost certainly escalate as “aquatourism” drives the development of underwater accommodations. We show that current and future marine developments could be designed to reduce negative ecological impacts while promoting ecosystem services.