12 results on '"Kamakura, N."'
Search Results
2. Bulk screening in core level photoemission from Mott-Hubbard and Charge-Transfer systems
- Author
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Taguchi, M., Chainani, A., Kamakura, N., Horiba, K., Takata, Y., Ikenaga, E., Yokoya, T., Shin, S., Kobayashi, K., Tamasaku, K., Nishino, Y., Miwa, D., Yabashi, M., Ishikawa, T., Mochiku, T., Hirata, K., and Motoya, K.
- Subjects
Condensed Matter - Strongly Correlated Electrons ,Condensed Matter - Superconductivity - Abstract
We report bulk-sensitive hard X-ray ($h\nu$ = 5.95 KeV) core level photoemission spectroscopy (PES) of single crystal V$_{1.98}$Cr$_{0.02}$O$_{3}$ and the high-$T_c$ cuprate Bi$_2$Sr$_{2}$CaCu$_{2}$O$_{8+\delta}$ (Bi2212). V$_{1.98}$Cr$_{0.02}$O$_{3}$ exhibits low binding energy "satellites" to the V $2p$ "main lines" in the metallic phase, which are suppressed in the antiferromagnetic insulator phase. In contrast, the Cu $2p$ spectra of Bi2212 do not show temperature dependent features, but a comparison with soft X-ray PES indicates a large increase in the $2p^5 3d^9$ "satellites" or $3d^9$ weight in the bulk. Cluster model calculations, including full multiplet structure and a screening channel derived from the coherent band at the Fermi energy, give very satisfactory agreement with experiments.
- Published
- 2004
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3. Bulk Electronic structure of Na$_{0.35}$CoO$_{2}$.1.3H$_{2}$O
- Author
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Chainani, A., Yokoya, T., Takata, Y., Tamasaku, K., Taguchi, M., Shimojima, T., Kamakura, N., Horiba, K., Tsuda, S., Shin, S., Miwa, D., Nishino, Y., Ishikawa, T., Yabashi, M., Kobayashi, K., Namatame, H., Taniguchi, M., Takada, K., Sasaki, T., Sakurai, H., and Takayama-Muromachi, E.
- Subjects
Condensed Matter - Materials Science ,Condensed Matter - Superconductivity - Abstract
High-energy (h$\nu$ = 5.95 keV) synchrotron Photoemission spectroscopy (PES) is used to study bulk electronic structure of Na$_{0.35}$CoO$_{2}$.1.3H$_{2}$O, the layered superconductor. In contrast to 3-dimensional doped Co oxides, Co $\it{2p}$ core level spectra show well-separated Co$^{3+}$ and Co$^{4+}$ ions. Cluster calculations suggest low spin Co$^{3+}$ and Co$^{4+}$ character, and a moderate on-site Coulomb correlation energy U$_{dd}\sim$3-5.5 eV. Photon dependent valence band PES identifies Co $\it{3d}$ and O $\it{2p}$ derived states, in near agreement with band structure calculations., Comment: 4 pages 4 figures Revised text added reference
- Published
- 2003
- Full Text
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4. Layer dependent band dispersion and correlations using tunable Soft X-ray ARPES
- Author
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Kamakura, N., Takata, Y., Tokushima, T., Harada, Y., Chainani, A., Kobayashi, K., and Shin, S.
- Subjects
Condensed Matter - Strongly Correlated Electrons ,Condensed Matter - Materials Science - Abstract
Soft X-ray Angle-Resolved Photoemission Spectroscopy is applied to study in-plane band dispersions of Nickel as a function of probing depth. Photon energies between 190 and 780 eV were used to effectively probe up to 3-7 layers. The results show layer dependent band dispersion of the Delta_2 minority-spin band which crosses the Fermi level in 3 or more layers, in contrast to known top 1-2 layers dispersion obtained using ultra-violet rays. The layer dependence corresponds to an increased value of exchange splitting and suggests reduced correlation effects in the bulk compared to the surface., Comment: 7 pages, 3 figures Revised text and figure
- Published
- 2003
- Full Text
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5. Role of Ag doping in Ba8Si46 compounds
- Author
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Kamakura, N., Nakano, T., Ikemoto, Y., Usuda, M., Fukuoka, Hiroshi, Yamanaka, Shoji, Shin, S., and Kobayashi, K.
- Abstract
The silicon clathrate compound Ba8Si46 shows superconductivity below the critical temperature (Tc) of 8K, and the Tc decreases monotonically with doping Ag. In order to reveal effects of Ag doping on the electronic states, we have applied soft x-ray photoemission spectroscopy to Ag-doped silicon clathrate compounds Ba8AgxSi46-x (x=0,1,3,6). The valence band photoemission spectra show that a Ba 5d-derived state at the Fermi level (EF), which is prominently observed in Ba8Si46, decreases with increasing Ag content. The reduction in the peak intensity at EF with increasing Ag content is therefore in accord with the decrease of Tc in Ba8AgxSi46-x. Band structure calculation using local-density approximation reproduces the observed valence band spectra of x=0 and 6. The Si 2p and Ba 4d core-level photoemission spectra demonstrate that the valence electron of Si is attracted to the Ag site in x=1 and the 5d electron of Ba inside the Si24 cage is further donated to Ag in x≥3. Hence, Ag doping leads to the reduction of the peak at EF.
- Published
- 2005
6. Spin-polarized surface state of MnSb(0 0 0 1)
- Author
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Rader, O, primary, Ležaić, M, additional, Blügel, S, additional, Fujimori, A, additional, Kimura, A, additional, Kamakura, N, additional, Kakizaki, A, additional, Miyanishi, S, additional, and Akinaga, H, additional
- Published
- 2005
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7. Role of Ag doping in Ba8Si46 compounds
- Author
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Kamakura, N., Nakano, T., Ikemoto, Y., Usuda, M., Fukuoka, Hiroshi, Yamanaka, Shoji, Shin, S., Kobayashi, K., Kamakura, N., Nakano, T., Ikemoto, Y., Usuda, M., Fukuoka, Hiroshi, Yamanaka, Shoji, Shin, S., and Kobayashi, K.
- Abstract
The silicon clathrate compound Ba8Si46 shows superconductivity below the critical temperature (Tc) of 8K, and the Tc decreases monotonically with doping Ag. In order to reveal effects of Ag doping on the electronic states, we have applied soft x-ray photoemission spectroscopy to Ag-doped silicon clathrate compounds Ba8AgxSi46-x (x=0,1,3,6). The valence band photoemission spectra show that a Ba 5d-derived state at the Fermi level (EF), which is prominently observed in Ba8Si46, decreases with increasing Ag content. The reduction in the peak intensity at EF with increasing Ag content is therefore in accord with the decrease of Tc in Ba8AgxSi46-x. Band structure calculation using local-density approximation reproduces the observed valence band spectra of x=0 and 6. The Si 2p and Ba 4d core-level photoemission spectra demonstrate that the valence electron of Si is attracted to the Ag site in x=1 and the 5d electron of Ba inside the Si24 cage is further donated to Ag in x≥3. Hence, Ag doping leads to the reduction of the peak at EF.
8. Identification of Gα 12 -vs-Gα 13 -coupling determinants and development of a Gα 12/13 -coupled designer GPCR.
- Author
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Tatsumi M, Cruz C, Kamakura N, Kuwabara R, Nakamura G, Ikuta T, Abrol R, and Inoue A
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- Humans, HEK293 Cells, Designer Drugs chemistry, Designer Drugs metabolism, Protein Binding, Receptors, G-Protein-Coupled metabolism, Receptors, G-Protein-Coupled genetics, Receptors, G-Protein-Coupled chemistry, GTP-Binding Protein alpha Subunits, G12-G13 metabolism, GTP-Binding Protein alpha Subunits, G12-G13 genetics, Molecular Dynamics Simulation
- Abstract
G-protein-coupled receptors (GPCRs) transduce diverse signals into the cell by coupling to one or several Gα subtypes. Of the 16 Gα subtypes in human cells, Gα
12 and Gα13 belong to the G12 subfamily and are reported to be functionally different. Notably, certain GPCRs display selective coupling to either Gα12 or Gα13 , highlighting their significance in various cellular contexts. However, the structural basis underlying this selectivity remains unclear. Here, using a Gα12 -coupled designer receptor exclusively activated by designer drugs (DREADD; G12 D) as a model system, we identified residues in the α5 helix and the receptor that collaboratively determine Gα12 -vs-Gα13 selectivity. Residue-swapping experiments showed that G12 D distinguishes differences between Gα12 and Gα13 in the positions G.H5.09 and G.H5.23 in the α5 helix. Molecular dynamics simulations observed that I378G.H5.23 in Gα12 interacts with N1032.39 , S1693.53 and Y17634.53 in G12 D, while H364G.H5.09 in Gα12 interact with Q2645.71 in G12 D. Screening of mutations at these positions in G12 D identified G12 D mutants that enhanced coupling with Gα12 and to an even greater extent with Gα13 . Combined mutations, most notably the dual Y17634.53 H and Q2645.71 R mutant, further enhanced Gα12 / 13 coupling, thereby serving as a potential Gα12/13 -DREADD. Such novel Gα12/13 -DREADD may be useful in future efforts to develop drugs that target Gα12/13 signaling as well as to identify their therapeutic indications., (© 2024. The Author(s).)- Published
- 2024
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9. The toxicity of dysregulated Plk1 activity revealed by its suppressor mutations.
- Author
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Kamakura N, Takahashi M, and Jo M
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- Humans, Protein Serine-Threonine Kinases metabolism, Mitosis genetics, Polo-Like Kinase 1, Suppression, Genetic, Cell Cycle Proteins metabolism
- Abstract
Polo-like kinase 1 (Plk1) is a mitotic kinase that has multiple functions throughout the cell cycle. Catalytic activation of Plk1 is known to be regulated by phosphorylation of the kinase domain, including Thr210, and by releasing the kinase domain from its inhibitory polo-box domain. However, how Plk1 is activated to fulfill its proper roles, in time and space, is not well understood. In this study, we unintentionally found that the expression of a constitutively active form of human Plk1 is toxic to bacterial cells, such that cells contained point mutations that alleviate the kinase activity. Structural prediction revealed that these mutations are adjacent to the amino acids supporting the kinase activity. When human cells express these mutants, we found decreased levels of Plk1's substrate phosphorylation, resulting in mitotic defects. Moreover, unlike in bacterial cells, the expression of activated Plk1 mutants did not affect cell proliferation in human cells unless localized at the right place in mitosis. Our observations identified new suppressor mutations and underscored the importance of spatiotemporal regulation in Plk1, providing a basis for how we might intervene in this kinase for therapeutic purpose in human cells., (© 2023 Molecular Biology Society of Japan and John Wiley & Sons Australia, Ltd.)
- Published
- 2023
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10. Case report: Plasmablastic neoplasm with multinucleated giant cells-Analysis of stemness of the neoplastic multinucleated giant cells.
- Author
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Otsuka-Kamakura N, Sugiura Y, Yamazaki T, Shimizu N, and Hiruta N
- Abstract
Cancer stem cells have the capability of self-renewal and multipotency and are, therefore, associated with tumor heterogeneity, resistance to chemoradiation therapy, and metastasis. The hypothesis that multinucleated giant cells, which often emerge following chemo- and/or radiotherapy, serve as cancer stem cells has not been fully evaluated. Although a previous study demonstrated that these cells functioned as stem cells, only low levels of Yamanaka factors were expressed, contrasting with the high expression seen from their gestated first-generation mononuclear cells. Herein, we report a case of a plasmablastic neoplasm with multinucleated giant cells that were analyzed for stemness to test the above hypothesis. The patient was a male in his 80s who had a plasmablastic neoplasm that was not easily distinguishable as plasmablastic lymphoma versus plasma cell myeloma of plasmablastic type. Lymph node biopsy showed predominant mononuclear cell proliferation with admixed multinucleated giant cells. Immunohistochemistry and in situ hybridization showed that both multinucleated and mononuclear cells had the same profile: CD138(+), light chain restriction of κ>λ, cyclin D1(+), CD68(-), EBER-ISH (+). These results suggested that both cell types were neoplastic. In accordance with the previous study, the multinucleated giant cells showed low expression of Yamanaka factors, which were highly expressed in some of the mononuclear cells. Furthermore, the multinucleated giant cells showed a much lower proliferative activity (Mib1/Ki67 index) than the mononuclear cells. Based on these results, the multinucleated giant cells were compatible with cancer stem cells. This case is expected to expand the knowledge base regarding biology of cancer stem cells., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Otsuka-Kamakura, Sugiura, Yamazaki, Shimizu and Hiruta.)
- Published
- 2022
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11. Identification and characterization of integrin-binding sialoprotein (IBSP) genes in reptile and amphibian.
- Author
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Shintani S, Kamakura N, Kobata M, Toyosawa S, Onishi T, Sato A, Kawasaki K, Weiss KM, and Ooshima T
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- Amino Acid Sequence, Animals, Base Sequence, Cloning, Molecular, DNA Primers, DNA, Complementary genetics, Humans, Integrin-Binding Sialoprotein, Mammals genetics, Molecular Sequence Data, Phylogeny, Polymerase Chain Reaction, Protein Biosynthesis, RNA genetics, Alligators and Crocodiles genetics, DNA genetics, Peptide Initiation Factors genetics, Sialoglycoproteins genetics, Xenopus laevis genetics
- Abstract
Integrin-binding sialoprotein (IBSP) is a member of the small integrin-binding ligand N-linked glycoprotein (SIBLING) family; and the whole SIBLING family is further included in a larger secretory calcium-binding phosphoprotein (SCPP) family. SIBLING proteins are known to construct a part of the non-collagenous extracellular matrices of calcified tissues, and considered to have arisen by duplication and subsequent divergent evolution of a single ancient gene. To understand the alterations of SIBLING molecules associated with the evolution of calcified tissues in vertebrates, we initiated a search for lower vertebrate orthologs of SIBLING genes. In the present study, an IBSP ortholog from a reptile (caiman) and two distinct orthologs from an amphibian (African clawed toad) were identified and characterized. As expected, the toad IBSP genes were transcribed only in calcified tissue (jaw and tibia), as also seen in mammals. The caiman, toad, avian, and mammalian IBSPs share several unique features specific for IBSP and apparently have similar properties. Furthermore, analysis of the sequences suggested that the IBSP molecule might have gradually intensified its functions related to calcification during its evolutionary process through tetrapods.
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- 2008
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12. Identification and characterization of matrix metalloproteinase-20 (MMP20; enamelysin) genes in reptile and amphibian.
- Author
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Shintani S, Kobata M, Kamakura N, Toyosawa S, and Ooshima T
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- Alligators and Crocodiles genetics, Alligators and Crocodiles metabolism, Amelogenin metabolism, Amino Acid Sequence, Animals, Base Sequence, Cloning, Molecular, DNA, Complementary isolation & purification, Matrix Metalloproteinase 20 metabolism, Molecular Sequence Data, Phylogeny, Sequence Homology, Amino Acid, Tissue Distribution, Xenopus laevis genetics, Xenopus laevis metabolism, Amphibians genetics, Matrix Metalloproteinase 20 genetics, Reptiles genetics
- Abstract
Matrix metalloproteinase-20 (MMP20; enamelysin) is important for proteolytic processing of extracellular matrix (ECM) proteins during the formation of enamel and plays a critical role in proteolytic processing of amelogenin (AMEL), the most abundant enamel ECM protein. MMP20 might have played a role in the emergence of teeth, because jawless vertebrates with primordial teeth on their external skeletons may have possessed the MMP20 gene, and MMP20 and enamel ECM proteins are thought to have evolved together in a special relationship over time. Thus, an understanding of the molecular evolution of the MMP20 gene is important for elucidating the evolution of enamel and it is necessary to identify the orthologs of the MMP20 gene in non-mammals, as it has been identified in mammals. In the present study, orthologs of the MMP20 genes from a reptile (caiman) and an amphibian (African clawed toad) were cloned and characterized. Comparisons of the orthologs revealed that the MMP20 proteins were highly conserved throughout the evolution of tetrapods. Further, the caiman, toad, and mammalian MMP20 shared several unique features specific for MMP20, but not for other matrix metalloproteinases. In addition, the toad MMP20 gene was transcribed only in the upper jaw, presumably in teeth. These results suggest that MMP20 in a common ancestor of tetrapods might have been recruited for the processing of AMEL and conserved over 350 million years of evolution.
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- 2007
- Full Text
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