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Background It can be expected that molecular biomarkers will increasingly affect clinical decisions and lead to the development of more personalized therapies in glioblastoma (GBM) in the future. In several other tumor entities TP53 gene mutation or p53 immunoreactivity (IR) serve as a prognostic marker, significantly affecting overall survival (OS) and progression-free survival (PFS). Such an association has not yet sufficiently been demonstrated in GBM. However, there are known prognostic markers in GBM, notably MGMT promotor methylation (mMGMT) which also serves as an important predictive marker leading to a better response to temozolomide chemotherapy. Our aim was to evaluate retrospectively if p53 mutation determined via immunohistochemistry (IHC) could act as a prognostic or predictive marker in GBM. Material and Methods Tumor samples of 195 treatment-naïve patients with IDHwt GBM that had been stained with the p53 antibody DO-7 were subdivided into 2 different groups by p53 IHC. Samples were considered as p53mut when strong p53 IR was detected in ≥10% of all tumor cells and as p53wt when in Results The frequency of p53mut was 36.4% (71/195). p53mut tumors showed a significantly higher IR with Ki-67 proliferation marker (p=0.005) and p53wt seemed to be associated with multifocal primary tumor localization, though not statistically significant (p=0.107). There was no significant difference between p53wt and p53mut regarding gender, age, extent of resection, adjuvant therapy, occurrence of seizures, mMGMT or ATRX loss. The p53 status was not associated with OS or PFS. Factors that univariately led to significantly longer OS and PFS were younger age, unilateral or unifocal primary tumor localization, gross-total resection, higher Karnofsky Performance Status (KPS), mMGMT and adjuvant treatment via Stupp regimen instead of radiotherapy alone, the latter being significantly better than best supportive care. In multivariate survival analyses only age Conclusion Based on our study, p53 IR has no prognostic or predictive significance in IDHwt GBM. There have been previous studies with similar and others with contradicting results. Remarkable is the discordance of the used IR thresholds between different studies. Further studies should aim to revalidate the staining threshold and improve the concordance between TP53 gene sequencing and p53 IHC in IDHwt GBM.

The great cormorant ( Phalacrocorax carbo ) is a species with a strong impact on the environment in the areas inhabited by breeding colonies or migrating colonies. Depending on the size of colonies, destruction of tree cover, soil sterilization due to the supply of enormous amounts of aggressive faeces and overpreying on fish from nearby water bodies can be observed. In this study, an iterative algorithm for modelling the annual life cycle of a swarm of cormorants was described. The procedure was based on a mathematical model of a herd of birds, taking into account both fixed biological factors, such as food demand, availability of habitats and the reproductive cycle, and random factors occurring in the environment, e.g., flooding, storms or human activity. Additionally, the algorithm included the variable time of inhabitance depending on the duration of the ice cover over water bodies, and the possibility of conducting a killing programme. The proposed procedure was tested and verified positively using data obtained from the literature.

The European eel (Anguilla anguilla) is an economically important species in Poland, not only due to the quality and price of its meat, but also due to the eel stock management plan implemented since 2010. However, the imported juvenile eels for reintroduction are directly introduced into waters or reared in fish farms without necessary monitoring of the health status, especially for hazardous and pathogenic viruses. The study was conducted in the second half of 2014 using the European eels collected from Poland (Dąbie Lake, Szczecin Lagoon, hatcheries) and Denmark, mainly from importers and organizations producing material for reintroduction. A total of 256 samples were analysed including gills, liver, kidney, spleen, intestine and heart. Detection of the AngHV-1 was performed using pair primers designed to amplify the gene fragment encoding the viral DNA polymerase. Each PCR product was confirmed by bidirectional sequencing and sequence alignment with GenBank sequences. Obtained results indicate that the infection status of the eels imported to Poland is in the range of 0 to 100%, with the highest percentage of asymptomatic carriers among the fish imported from Denmark for the purpose of reintroduction and rearing. The eels collected in natural waters demonstrated an AngHV-1 infection rate of 30% (Dąbie Lake) and 40% (Trzebież). Bioinformatics analysis demonstrated that all these sequences were identical and represented the haplotype characterized for the first time in Poland by Kempter et al. (2014). The intensity of eel reintroduction in Poland is 1.2 million individuals per year, which permits a conclusion that the species is important for the fishing economy and should be monitored against AngHV-1. The demonstrated existing high risk posed by mass kills of the European eel in domestic waters after the introduction of the herpesvirus AngHV-1 from imported fish.

Most diseases induced by herpesviruses are host-specific; however, exceptions exist within the family Alloherpesviridae. Most members of the Alloherpesviridae are detected in at least two different species, with and without clinical signs of a disease. In the current study the Koi herpesvirus (KHV) was used as a model member of the Alloherpesviridae and rainbow trout as a model salmonid host, which were infected with KHV by immersion. KHV was detected using direct methods (qPCR and semi-nested PCR) and indirect (enzyme-linked immunosorbant assay; ELISA, serum neutralization test; SNT). The non-koi herpesvirus disease (KHVD)-susceptible salmonid fish were demonstrated to transfer KHV to naive carp at two different temperatures including a temperature most suitable for the salmonid (15°C) and cyprinid (20°C). At 20°C KHVD was induced in carp cohabitated with infected trout. KHV was also detected virologically and serologically at the end of the experiment in both rainbow trout and carp.

Background. The study is a contribution to Project CELFISH which involves genetic identification of populations of fish species presenting a particular economic importance or having a potential to be used in the so-called commercial substitutions. The EU fish trade has been showing a distinct trend of more and more fish species previously unknown to consumers being placed on the market. Molecular assays have become the only way with which to verify the reliability of exporters. This paper is aimed at pinpointing genetic markers with which to label and differentiate between two populations of splendid alfonsino, Beryx splendens Lowe, 1834, a species highly attractive to consumers in Asia and Oceania due to the meat taste and low fat content. Materials and methods. DNA was isolated from fragments of fins collected at local markets in Japan (MJ) (n = 10) and New Zealand (MNZ) (n = 18). The rhodopsin gene (RH1) fragment and 16 microsatellite DNA fragments (SSR) were analysed in all the individuals. The sequences obtained were processed using the BioEdit and BLAST software, whereas SSR data were processed with the GeAlEX analysis package. Results. The BioEdit software-aided comparison of MJ and MNZ nucleotide sequences of the rhodopsin gene fragments were identical and showed 100% agreement with the alfonsino sequence deposited under access number DQ197832. The preliminary analysis of SSR markers showed all the loci analysed in both populations to be polymorphic, and when randomly selected specimens were assigned to the original populations. The affinity test correctly identified the provenance of all those specimens. Conclusion. The results obtained constitute a tool for molecular differentiation between alfonsino populations collected in the FAO 81 (New Zealand) and FAO 71 (Japan) areas for the purpose of catch quota control and for checking the agreement between the label declaration and the actual product.

Following the 2001 bioterrorist attacks using letters containing Bacillus anthracis spores, a number of sites had to be decontaminated. Source reduction-the process of reducing biocontamination levels prior to the main decontamination treatment-is a critical step in decontaminating buildings. Such activities include the removal of items from a facility either for off-site treatment and reuse or ultimate disposal, as well as the pretreatment of certain surfaces in the facility. In addition, waste disposal activities are initiated during the source reduction process and continued throughout the overall remediation process. This article presents the source reduction and waste disposal activities at the Department of State (DoS) Diplomatic Pouch and Mail Facility (SA-32) in Loudoun County, Virginia. At this facility, nearly all materials were removed before the fumigations with vaporized hydrogen peroxide. The materials that were removed from the site were divided into essential and nonessential items, and nonessential items were further categorized as recyclable or not recyclable. Removed materials were subjected to 5 different decontamination technologies, either before or after removal. The surfaces of large, fixed items and interior facility structures were pretreated and then fumigated. Environmental sampling was performed throughout the source reduction process for quality assurance purposes. The source reduction process lasted about 9 months and cost about $4.3 million. The overall remediation process took about 16 months and cost $8.6 million.

Background. Sturgeons have long been extinct in Polish inland waters. A substantial effort has recently been put into their restitution, covering the drainage areas of two major Polish rivers, the Oder and the Vistula. The stocked fishes are clinically healthy, but very little is known about their potential to transmit viral diseases including koi herpes virus (KHV) to healthy fishes of other species, which may pose a threat to the disease-free zones. This study was intended to determine if sturgeons could be asymptomatic carriers of KHV. Materials and methods. A total of 29 sturgeons (two species; length 8–37 cm) originating from fish farms in northern Poland with a known KHV history in common carp or koi in the area were examined: 15 Russian sturgeons, Acipenser gueldenstaedtii, with clinical signs of a disease and 14 asymptomatic Atlantic sturgeons, A. oxyrinchus. The former were sent to the laboratory alive while the latter were sent fixed in ethanol. As it is required for detection of a latent KHV infection in acipenserids, two independent procedures were applied. The preliminary results were obtained using PCR. Those findings were subsequently confirmation by nested PCR. The latter procedure consists of sequence analysis of PCR products and direct detection of KHV infected cells in tissue materials by in-situ hybridization on nucleic acid level or indirect immunofluorescence on KHV protein level. Results. KHV genome parts were found in nine Russian sturgeons and four Atlantic sturgeons. Comparison of PCR results obtained from three primer pairs used for KHV diagnostic in sturgeon showed that those designed by Bercovier et al. were most sensitive and robust for this purpose. In order to confirm the presence of viral particles the most useful method was in-situ hybridization (ISH), allowing the detection of KHV in gill samples obtained from live sturgeons. Conclusion. This preliminary study shows that sturgeons can be carriers of KHV. Therefore a viral diagnostics is highly recommended not only for sturgeons obtained from the environment but also for fertilized eggs, fry, and fish intended for re-stocking measurements of inland waters.

Background. Monitoring the genetic diversity of fish populations can provide information necessary to determine fishing quotas for the commercially caught species. One of the species subjected to intensive exploitation is the yellowstripe scad, Selaroides leptolepis (Cuvier, 1833), commonly occurring in the coastal waters of Vietnam, Cambodia, Malaysia, and Indonesia. This paper is the third part of a larger project: ”Development of a genetic-based system for identification of food products from fisheries and aquaculture introduced to the European Union customs area”. Materials and methods. Fin fragments of the yellowstripe scad, Selaroides leptolepis, were obtained in 2012 and 2013 from local markets in Vietnam (SVN), Cambodia (SKH), Malaysia (MMY), and Indonesia (MID). The analyses focused on the amplification and sequencing of a fragment of the nuclear rhodopsin gene which utilized as identification label. Subsequently, in the obtained SVN, SKH, MMY, and MID samples, 11 microsatellite regions (SRR) were analysed. Sequence analyses were performed using the BioEdit and BLAST software, while the analysis of the obtained SRR data was conducted using the GenAlEx software. Results. The analysis of the obtained loci variants divided the investigated populations into two genetically homogeneous groups: the Vietnamese–Indonesian group and the Malaysian–Cambodian group. The analysis of genetic diversity revealed statistically significant deviations from the Hardy–Weinberg equilibrium in the investigated populations and indicated the Vietnamese population as the most stable, while the Malaysian population as the least stable. Conclusion. The study provides information on the genetic diversity of the investigated populations and allows assignment of the captured fish to the geographical regions specified. Moreover, indicate that among analysed populations the safest populations were those caught in the local fisheries (continental shelf) of Vietnam and Cambodia due to their high mean genetic diversity.

Background. Genetic traceability of seafood as well as population identification using molecular methods provide useful information about the fish origin and are important for protection of overfished populations, as well as for monitoring illegal, unreported, and unregulated (IUU) fisheries. The presently reported study focused on Indian mackerel, Rastrelliger kanagurta (Cuvier, 1816)—a pelagic species with a wide range of distribution—especially important for many tropical countries, such as India, Philippines, and Thailand. This paper is the first part of a larger project: ”Development of a genetic-based system for identification of food products from fisheries and aquaculture introduced to the European Union customs area”. Materials and methods. Samples consisting of fin fragments of Indian mackerel were obtained from local markets in Thailand (MTH), Vietnam (SVN), Cambodia (SKH), and Madagascar (SMG) within 2012–2013. Two genes were analysed: nuclear rhodopsin gene (RH1) and mitochondrial D-loop (D-loop) region through RFLP analysis simulation and sequencing. Additionally, the samples from Cambodia and Madagascar were analysed with eight microsatellite loci (SSR). The data processing was aided by GenAlEx 6.5 and GeneClass2 software. Results. A comparison of the RH1 gene section revealed a total homology among the studied samples. A comparative analysis of D-loop sequences in the studied groups revealed intrapopulational diversity for MTH-, SKH-, SMG-, and SVN samples, at the level of 1, 1, 0.5, and 0.6 percentage points, respectively. Furthermore, the D-loop sequences identified a characteristic restriction site for SMG population. Based on the allele frequencies, we randomly assigned selected individuals to their original populations. GeneClass2 software correctly assigned only 16 out of 21 individuals to either the Cambodian or the Madagascar population, which jointly constituted 76% of all samples. We demonstrated, using AMOVA and GenAlEx 6.5, that the highest level of variability occurred among individuals within the respective populations, while the lowest interpopulation diversity was between the SMG and SKH populations. Conclusion. Our results may help the relevant authorities in the countries of the European Union to identify Indian mackerel and especially its products and trace them to the respective locality. Our findings may also be used for species-specific conservation measures hopefully undertaken by fisheries authorities of the countries where we took our samples. Results on other fish species, prepared in the frames of the same project, will be presented in other papers that will follow soon.

A new monogenean species Neoheterobothrium hippoglossini sp. n. from the gill cavity of Hippoglossina stomata Steindachner, 1876 is described and illustrated. The new species differs from its seven congeners in a number of morphological features and in having a different host. The validity of the genus Neoheterobothrium is discussed. Neoheterobothrium mcdonaldi Payne, 1987 is relegated from the genus and from the subfamily Choricotylinae and placed in one of the remaining subfamilies of the family Diclidophoridae.

Emergency management/Emergency preparedness; Emergency management/Emergency response; Terrorism and threats/Biological terrorism

The genetic variability of whitefish, Coregonus lavaretus (L.), was studied based on 114 individuals from nine populations inhabiting Polish lakes, including the Szczecin Lagoon, and from one population each from lakes in Austria and Switzerland. Differences within and among populations were assessed with mitochondrial ND-1 gene sequences that were PCR amplified and digested with ten restriction enzymes. The ten composite haplotypes obtained were sequenced and analyzed with MEGA4 software. The highest intrapopulation variability was noted in the whitefish populations inhabiting lakes Insko, Miedwie, Marianowo, Wisola, Œremskie, Morzycko, the Szczecin Lagoon, and Lake Lucerne, which possessed from two to five composite haplotypes. In contrast, populations inhabiting lakes Woœwin, Czarne, and Traunsee were fixed for the most common haplotype H2.

Multi-fragment decays of 129Xe, 197Au, and 238U projectiles in collisions with Be, C, Al, Cu, In, Au, and U targets at energies between E/A = 400 MeV and 1000 MeV have been studied with the ALADIN forward-spectrometer at SIS. By adding an array of 84 Si-CsI(Tl) telescopes the solid-angle coverage of the setup was extended to \theta_lab = 16 degree. This permitted the complete detection of fragments from the projectile-spectator source. The dominant feature of the systematic set of data is the Z_bound universality that is obeyed by the fragment multiplicities and correlations. These observables are invariant with respect to the entrance channel if plotted as a function of Z_bound, where Z_bound is the sum of the atomic numbers Z_i of all projectile fragments with Z_i \geq 2. No significant dependence on the bombarding energy nor on the target mass is observed. The dependence of the fragment multiplicity on the projectile mass follows a linear scaling law. The reasons for and the limits of the observed universality of spectator fragmentation are explored within the realm of the available data and with model studies. It is found that the universal properties should persist up to much higher bombarding energies than explored in this work and that they are consistent with universal features exhibited by the intranuclear cascade and statistical multifragmentation models. PACS numbers: 25.70.Mn, 25.70.Pq, 25.75.-q, Comment: Plain Tex, 49 pages including 20 eps figures. Also available from http://www-kp3.gsi.de/www/kp3/aladin_publications.html

M. L. Begemann-Blaich, F. Cosmo, A. Ferrero, J. Hubele, G. Imme, I. Iori, J. Kempter, P. Kreutz, G. J. Kunde, W. D. Kunze, V. Lindenstruth, U. Lynen, M. Mang, A. Moroni, W. F. J. Muller, M. Neumann, B. Ocker, C. A. Ogilvie, J. Pochodzalla, G. Raciti, F. Rosenberger, T. Rubehn, H. Sann, R. Scardaoni, A. Schuttauf, C. Schwarz, W. Seidel, V. Serfling, W. Trautmann, A. Tucholski, A. Worner, and B. Zwieglinski

Characterization of asymptomatic KHV carriers may help understand virus transmission and storage. Such information allows farmers to minimize KHV on farms where this virus is present, also in common carp (Cyprinus carpio) monocultures. As asymptomatic KHV carriers, freshwater mollusks from the Unionidae family (swan mussels, Anodonta cygnea) and crustaceans from the Gammaridae family (scud, Gammarus pulex) were studied because of their unique method of feeding by accumulating bacterial and viral particles. The KHV genome was detected by nested PCR and confirmed by PCR recognizing the KHV glycoprotein gene in ORF 56 (KHV-U). Both PCR and nested PCR, which recognize the KHV thymidine kinase gene, always produced negative results in the swan mussels and scud samples.