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The gastropod infraclass Euthyneura comprises at least 30,000 species of snails and slugs, including nudibranch sea slugs, sea hares and garden snails, that flourish in various environments on earth. A unique morphological feature of Euthyneura is the presence of two pairs of sensory head tentacles with different shapes and functions: the anterior labial tentacles and the posterior rhinophores or eyestalks. Here we combine molecular phylogenetic and microanatomical evidence that suggests the two pairs of head tentacles have originated by splitting of the original single tentacle pair (with two parallel nerve cords in each tentacle) as seen in many other gastropods. Minute deep-sea snails of Tjaernoeia and Parvaplustrum, which in our phylogeny belonged to the euthyneurans’ sister group (new infraclass Mesoneura), have tentacles that are split along much of their lengths but associated nerves and epidermal sense organs are not as specialized as in Euthyneura. We suggest that further elaboration of cephalic sense organs in Euthyneura closely coincided with their ecological radiation and drastic modification of body plans. The monotypic family Parvaplustridae nov., superfamily Tjaernoeioidea nov. (Tjaernoeiidae + Parvaplustridae), and new major clade Tetratentaculata nov. (Mesoneura nov. + Euthyneura) are also proposed based on their phylogenetic relationships and shared morphological traits.

The infraclass Palaeognathae includes the flightless ratites (ostrich, emu, rhea, cassowary, kiwi) and the tinamous, a group of related, flighted birds. This chapter focuses on unique anatomy and important non-infectious and infectious diseases of these groups of birds. Notable among these are management-related diseases such as gastrointestinal tract impactions, OIE reportable viral diseases including those cause by the avian influenza and eastern equine encephalitis viruses, and a range of species-specific endo- and ectoparasites virus infections.

Background Runt-related transcription factor 2 (RUNX2) is a transcription factor essential for skeletal development. Variation within the RUNX2 polyglutamine / polyalanine (QA) repeat is correlated with facial length within orders of placental mammals and is suggested to be a major driver of craniofacial diversity. However, it is not known if this correlation exists outside of the placental mammals. Results Here we examined the correlation between the RUNX2 QA repeat ratio and facial length in the naturally evolving sister group to the placental mammals, the marsupials. Marsupials have a diverse range of facial lengths similar to that seen in placental mammals. Despite their diversity there was almost no variation seen in the RUNX2 QA repeat across individuals spanning the entire marsupial infraclass. The extreme conservation of the marsupial RUNX2 QA repeat indicates it is under strong purifying selection. Despite this, we observed an unexpectedly high level of repeat purity. Conclusions Unlike within orders of placental mammals, RUNX2 repeat variation cannot drive craniofacial diversity in marsupials. We propose conservation of the marsupial RUNX2 QA repeat is driven by the constraint of accelerated ossification of the anterior skeleton to facilitate life in the pouch. Thus, marsupials must utilize alternate pathways to placental mammals to drive craniofacial evolution. Electronic supplementary material The online version of this article (doi:10.1186/s12862-017-0955-6) contains supplementary material, which is available to authorized users.

The order Thysanoptera is composed of cosmopolitan phytophagous and predaceous insects with diverse life histories, behaviors and habits. This order is currently thought to form a trichotomy with Hemiptera and Psocodea; Hemiptera and Thysanoptera are considered to be sister groups. The interrelationships within Thysanoptera remain unclear and cytotaxonomic studies are scarce in thrips. We report, for the first time, chromosomal data on seven species of thrips collected from a semi-arid region in the States of Bahia and Pernambuco (Northeast Brazil). A distinctive chromosomal pattern was observed in Thysanoptera when compared to other members within the infraclass Paraneoptera. Considerable karyotypic differences were also found within genera and species of Thysanoptera. Based on these data, we suggest that Paraneoptera forms a polyphyletic group and that Terebrantia and Tubulifera should be regarded as sister groups. The high chromosomal variability observed in Thysanoptera indicates that chromosomal rearrangements have played a key role in their speciation pathways.

We have sequenced and characterized the complete mitochondrial genome of the soft-shell clam, Mya arenaria, an important organism for environmental toxicology and aquaculture. Mya arenaria is located in the taxonomic order Myoida, which lacks any member with a completely annotated mitogenome. The M. arenaria mitochondrial genome is 17 947 bp in length. Like most marine bivalves, the circular mitogenome codes entirely on the heavy strand, with no introns. As with other bivalves, the gene order of the mitochondrion is highly rearranged. The mitogenome contains 12 protein-coding genes but ATP8 is missing, consistent with about half of all bivalve genera. Twenty-three tRNAs were identified. Phylogenetic analysis shows that M. arenaria is related most closely with the bivalves Sinonovacula constricta, and Moerella iridescens, of the infraclass Euheterodonta (unassigned). This, along with the close grouping of the phylogenetic trees, confirms a close tie between Myoida and Euheterodonta (unassigned).

In this review, we present an overview of the recent advances of genomic technologies applied to studies of fish species belonging to the superclass of Osteichthyes (bony fish) with a major emphasis on the infraclass of Teleostei, also called teleosts. This superclass that represents more than 50% of all known vertebrate species has gained considerable attention from genome researchers in the last decade. We discuss many examples that demonstrate that this highly deserved attention is currently leading to new opportunities for answering important biological questions on gene function and evolutionary processes. In addition to giving an overview of the technologies that have been applied for studying various fish species we put the recent advances in genome research on the model species zebrafish and medaka in the context of its impact for studies of all fish of the superclass of Osteichthyes. We thereby want to illustrate how the combined value of research on model species together with a broad angle perspective on all bony fish species will have a huge impact on research in all fields of fundamental science and will speed up applications in many societally important areas such as the development of new medicines, toxicology test systems, environmental sensing systems and sustainable aquaculture strategies.

The first studies relating to classification of creatures had been done in 18th century, by Carl Linnaeus (1) Linnaeus had been regarded as the father of morphologic classification (taxonomy). The creatures have been classified according to similarity of their appearances, in the morphologic classification. For instance; a shark that is a kind of fish and a dolphin that is a kind of mammalia had been examined within the scope of same family, although they are not similar as genetic structure. Flying squirrel (tribe of pteromyini) and Petaurus breviceps are very similar to each other with their big eyes, the white bellies and the stiff integument segment that takes place between their arm and legs and provides soaring and keeping the balance; therefore, they have been regarded as close relatives. However, the flying squirrel is a placental mammal (infraclass eutheria) and the Petaurus breviceps is a pouched mammal (infraclass marsupialia). Although they are different originally, there are creatures that appear differently even though they are similar genetically on the contrary the creatures that appear similar. Consequently, some bird species that have different appearances of cock and hen (for instance, Agelaius phoenicus) have been defined as different species by misunderstanding their physical appearances (2).

Perhaps the most striking fact about early Cenozoic avian history some 70 million years ago was the rapid radiation of large, flightless, ground-living birds. It has been suggested that, for a time, there was active competition between these large terrestrial birds and the early mammals. Probably reflecting the above noted early start of Ratitae of the infraclass Eoaves , the presumptive sex chromosomes of their present day survivors, such as the emu and the ostrich, largely remained homomorphic. The signs of genetic differentiation between their still-homomorphic Z and W chromosomes were tested by using two marker genes (Z-linked ZOV3 and the gene for the iron-responsive element-binding protein) and one marker sequence of a part of a presumptive pseudogene (W-linked EE0.6 of the chicken). Their homologues, maintaining 71–92% identities to the chicken counterparts, were found in both the emu ( Dromaius novaehollandiae ) and the ostrich ( Struthio camelus ). Their locations were visualized on chromosome preparations by fluorescence in situ hybridization. In the case of the emu, these three marker sequences were localized on both members of the fifth pair of a female, thus revealing no sign yet of genetic differentiation between the Z and the W. The finding was the same with regard to both members of the fourth pair of male ostriches. In the female ostrich, however, the sequence of the gene for the iron-responsive element-binding protein was missing from one of the pairs, thus revealing the differentiation by a small deletion of the W from the Z.

A small, well-preserved dentary of a tribosphenic mammal with the most posterior premolar and all three molars in place has been found in Aptian (Early Cretaceous) rocks of southeastern Australia. In most respects, dental and mandibular anatomy of the specimen is similar to that of primitive placental mammals. With the possible exception of a single tooth reported as Eocene in age, terrestrial placentals are otherwise unknown in Australia until the Pliocene. This possible Australian placental is similar in age to Prokennalestes from the late Aptian/early Albian Khoboor Beds of Mongolia, the oldest currently accepted member of the infraclass Placentalia.

The genetic basis for different host plant use was studied in a herbivorous ladybird beetle, Epilachna pustulosa, that exhibits interpopulational variation in host plant utilization. It usually depends on thistle, but one of the local forms occurs on both thistle and blue cohosh, which differ at the infraclass taxonomic level. In this local population, genetic association between the developmental performance on the two plants was neutral, suggesting genetic independence across the host plants. The form of reaction norms indicated some changes in relative rank position. Genetic variation among individuals on each host plant was detected. These results suggest that different genotypes are selected on different host plants and that a substantial proportion of the overall phenotypic plasticity is contributed by genotype-dependent environmental effects.

Reconstruction of the phylogeny of the five extant classes of the phylum Echinodermata has proven difficult. Results concerning higher-level taxonomic relationships among echinoderms are sensitive to the choice of analytical parameters and methods. Moreover, the proposal of a putative sixth class based on a small enigmatic disc-shaped echinoderm, Xyloplax, from the deep seas of the Bahamas and New Zealand in the 1980s further complicated the problem. Although clearly an echinoderm, Xyloplax did not have clear affinity among known groups. Using molecular sequence and developmental data from recently collected Xyloplax adults and embryos, we show that rather than representing an ancient distinct lineage as implied by its status as a class, Xyloplax is simply a starfish that is closely related to the asteroid family Pterasteridae. Many members of the Pterasteridae and all Xyloplax inhabit deep or polar seas and brood young. Brooding pterasterids and Xyloplax hold their young in specialized adult chambers until the young reach an advanced juvenile stage after which they are released as free-living individuals. We hypothesize that the unique morphology of Xyloplax evolved via progenesis--the truncation of somatic growth at a juvenile body plan but with gonadal growth to maturity. Although the overall phylogeny of extant echinoderms remains sensitive to the choice of analytical methods, the placement of Xyloplax as sister to pterasterid asteroids is unequivocal. Based on this, we argue that the proposed class and infraclass status of Xyloplax should be suppressed.

Alexarasniidae fam. n. and Alexarasnia rossica gen. et sp. n. are described from the Upper Permian of European Russia. Systematic position of this enigmatic family within the infraclass Polyneoptera is unclear.

Analysis of a comprehensive dataset demonstrates that the brachial index (BI = humerus length/ulna length) of modern birds (Neornithes) varies significantly between clades at all taxonomic levels, yet is strongly correlated with recent phylogenetic hypotheses. Variance in BI at the infraclass level is low, but increases rapidly during the proposed major radiation of neornithines in the Palaeocene and Eocene. Although a BI of greater than 1 is primitive for Neornithes, more basal groups of Mesozoic birds (Confuciusornithidae and some members of the diverse Enantiornithidae) had BIs comparable with those of 'higher' modern clades. It is possible that occupation of ecological niches by these Mesozoic clades precluded the divergence of some groups of neornithines until after the Cretaceous-Tertiary boundary. We suggest that with further analysis and data collection the relationships between flight behaviour, ecology and BI can be determined. Hence, BI may provide a useful tool for characterizing the ecology of fossil birds.

Eight family-group names of the insect orders Orthoptera and Titanoptera (Leiomelinae, Tettohaglinae, Praelocustopsinae, Archelcaninae, Subtiloriini, Prolandrevini, Prototitaninae, Deinotitaninae) published without concrete indications of their type genus are unavailable in according to the International Code of Zoological Nomenclature. They are made available here.

The generic names Sharovoplana nom. n., Baisoxya nom. n., Triassaga nom. n., and the subfamily name Triassaginae nom. n. are proposed for, respectively, Paraplana Sharov, Monodactylus Sharov, Maraga Gorochov, and Maraginae Gorochov because of homonymy. New synonymy among the replacement names is established: Kashgarlimahmutia Kocak et Kemal = Ademirsoyus Ozdikmen, syn. n.; Kashgarlimahmutiinae Kocak et Kemal = Ademirsoyinae Ozdikmem, syn. n.

A new therian mammal of primitive tribosphenic grade is described from the Upper Milk River Formation (Upper Cretaceous) of Alberta, Canada, and its relationships to other primitive tribosphenic therians are discussed. The new therian and its presumed nearest relatives form the basis of a new family within the Order Aegialodontia. A revised classification of the Infraclass Tribotheria is presented.

On the basis of a unique specialization of the braincase the four nontherian orders of mammals—the living Monotremata and the extinct Tricono-donta, Docodonta, and Multituberculata—are united into a single subclass, Prototheria. The Triconodonta and Docodonta are closely related and are grouped together in the infraclass Eotheria. The Monotremata and Multituberculata are only remotely allied to all other mammals and are each placed in a separate infraclass—Ornithodelphia for the monotremes and Allotheria for the Multituberculates. A classification of prototherian mammals to family is presented.

The Ginglymodi are a group of ray-finned fishes that make up one of three major subdivisions of the infraclass Neopterygii. Extant ginglymodians are represented by gars, which inhabit freshwater environments of North and Central America and Cuba. Here, we report the discovery of well-preserved fossils of a new ginglymodian, Kyphosichthys grandei gen. et sp. nov., from the Middle Triassic (Anisian) marine deposits (Guanling Formation) in Luoping, eastern Yunnan Province, China. The discovery documents the first known fossil record of highly deep-bodied ginglymodians, adding new information on the early morphological diversity of this group. The studies of functional morphology of extant deep-bodied fishes indicate that Kyphosichthys is not a fast swimmer but has a good performance in precise maneuvering, representing a morphological adaptation to structurally complex habitats (e.g. thick macrophyte beds, rocky areas, or coral reefs), which differs from the other members of this group. A cladistic analysis with the new fish taxon included supports the hypothesis that the Ginglymodi are more closely related to the Halecomorphi than to the Teleostei. Represented by Felberia, Kyphosichthys, and Dapedium, a highly deep and short fish body type has independently evolved at least three times in the stem-group neopterygians, ginglymodians, and basal teleosts within the lower neopterygians of the Triassic.